Query 011835
Match_columns 476
No_of_seqs 417 out of 3963
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02697 lycopene epsilon cycl 100.0 4.8E-63 1E-67 505.9 44.1 471 1-476 1-476 (529)
2 PLN02463 lycopene beta cyclase 100.0 1.6E-49 3.5E-54 401.0 40.1 364 105-476 26-394 (447)
3 TIGR01790 carotene-cycl lycope 100.0 7.2E-40 1.6E-44 330.4 40.4 351 109-474 1-353 (388)
4 PF05834 Lycopene_cycl: Lycope 100.0 1.3E-38 2.7E-43 318.1 34.8 332 109-474 1-341 (374)
5 TIGR01789 lycopene_cycl lycope 100.0 1.4E-34 3.1E-39 287.6 30.6 325 109-475 1-339 (370)
6 TIGR02023 BchP-ChlP geranylger 100.0 3.6E-33 7.7E-38 281.1 36.1 331 108-469 1-349 (388)
7 PLN00093 geranylgeranyl diphos 100.0 3.6E-33 7.7E-38 283.6 35.3 335 104-468 36-397 (450)
8 TIGR02028 ChlP geranylgeranyl 100.0 5.1E-33 1.1E-37 280.0 34.3 336 108-471 1-361 (398)
9 COG0644 FixC Dehydrogenases (f 100.0 8.3E-32 1.8E-36 271.4 34.7 338 106-470 2-355 (396)
10 TIGR02032 GG-red-SF geranylger 100.0 1.9E-29 4.2E-34 244.6 29.8 282 108-405 1-295 (295)
11 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.2E-30 1.3E-34 257.2 26.1 303 107-433 2-333 (387)
12 PF01494 FAD_binding_3: FAD bi 100.0 4.3E-30 9.2E-35 255.6 23.9 304 108-433 2-346 (356)
13 PRK10015 oxidoreductase; Provi 100.0 5.9E-29 1.3E-33 252.4 31.8 351 105-473 3-395 (429)
14 PRK07045 putative monooxygenas 100.0 7.9E-29 1.7E-33 249.8 30.5 302 105-433 3-341 (388)
15 PRK08013 oxidoreductase; Provi 100.0 1.1E-28 2.5E-33 249.4 30.5 301 107-433 3-340 (400)
16 PRK08773 2-octaprenyl-3-methyl 100.0 1.1E-28 2.4E-33 249.1 30.1 290 105-412 4-323 (392)
17 PRK07538 hypothetical protein; 100.0 6.4E-29 1.4E-33 252.3 27.7 313 108-445 1-361 (413)
18 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.4E-28 3E-33 248.0 29.2 303 109-437 1-338 (385)
19 PRK07190 hypothetical protein; 100.0 2.7E-28 5.8E-33 250.9 31.5 303 105-436 3-333 (487)
20 PRK06617 2-octaprenyl-6-methox 100.0 2.5E-28 5.4E-33 244.7 30.1 278 108-406 2-308 (374)
21 PRK08243 4-hydroxybenzoate 3-m 100.0 3.1E-28 6.7E-33 245.6 30.6 305 107-436 2-336 (392)
22 PRK07333 2-octaprenyl-6-methox 100.0 1.9E-28 4E-33 248.6 28.4 299 108-432 2-337 (403)
23 PRK07494 2-octaprenyl-6-methox 100.0 1.2E-28 2.7E-33 248.5 26.8 303 105-433 5-335 (388)
24 PRK06184 hypothetical protein; 100.0 2.8E-28 6.1E-33 253.5 30.0 305 107-436 3-338 (502)
25 PRK07588 hypothetical protein; 100.0 2.2E-28 4.8E-33 246.9 28.1 301 109-434 2-333 (391)
26 PRK07364 2-octaprenyl-6-methox 100.0 2.3E-28 5E-33 248.8 28.3 303 105-433 16-352 (415)
27 PRK09126 hypothetical protein; 100.0 2.8E-28 6E-33 246.3 27.8 306 107-438 3-343 (392)
28 PRK05714 2-octaprenyl-3-methyl 100.0 4.2E-28 9.1E-33 246.0 29.3 300 108-433 3-343 (405)
29 PRK06753 hypothetical protein; 100.0 1.7E-28 3.8E-33 246.2 26.0 308 109-446 2-334 (373)
30 PRK08020 ubiF 2-octaprenyl-3-m 100.0 4.9E-28 1.1E-32 244.4 29.3 302 105-433 3-339 (391)
31 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.8E-28 6.2E-33 245.4 27.2 302 109-437 1-335 (382)
32 PRK06847 hypothetical protein; 100.0 1E-27 2.2E-32 240.8 30.5 283 107-407 4-318 (375)
33 PRK07608 ubiquinone biosynthes 100.0 6.8E-28 1.5E-32 243.2 29.1 302 107-434 5-338 (388)
34 PRK06183 mhpA 3-(3-hydroxyphen 100.0 8.8E-28 1.9E-32 251.6 30.5 308 106-438 9-346 (538)
35 PRK08244 hypothetical protein; 100.0 1.5E-27 3.3E-32 247.6 32.0 298 108-433 3-327 (493)
36 PRK08850 2-octaprenyl-6-methox 100.0 1E-27 2.2E-32 243.0 29.8 302 107-433 4-340 (405)
37 PRK06185 hypothetical protein; 100.0 1.4E-27 3.1E-32 242.4 30.6 306 105-433 4-340 (407)
38 TIGR01989 COQ6 Ubiquinone bios 100.0 1.1E-27 2.3E-32 244.8 29.8 305 108-433 1-391 (437)
39 PRK08163 salicylate hydroxylas 100.0 6.2E-28 1.3E-32 244.1 27.5 307 107-435 4-341 (396)
40 PRK08849 2-octaprenyl-3-methyl 100.0 2.7E-27 5.8E-32 238.2 31.4 299 107-433 3-332 (384)
41 PRK08294 phenol 2-monooxygenas 100.0 5.2E-27 1.1E-31 248.1 33.3 310 106-436 31-398 (634)
42 PRK06834 hypothetical protein; 100.0 3.6E-27 7.9E-32 242.8 31.3 299 107-434 3-321 (488)
43 PRK11445 putative oxidoreducta 100.0 4.4E-27 9.5E-32 233.5 30.8 293 108-435 2-316 (351)
44 PRK10157 putative oxidoreducta 100.0 4.2E-28 9.1E-33 246.5 23.4 347 105-473 3-394 (428)
45 PRK06475 salicylate hydroxylas 100.0 1.5E-27 3.2E-32 241.4 26.9 307 108-434 3-344 (400)
46 PRK05868 hypothetical protein; 100.0 1.9E-27 4.1E-32 237.7 27.4 302 108-434 2-336 (372)
47 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 4.3E-27 9.3E-32 236.8 30.0 298 108-434 3-334 (390)
48 PRK06996 hypothetical protein; 100.0 3.6E-27 7.8E-32 238.3 29.4 301 104-433 8-343 (398)
49 PTZ00367 squalene epoxidase; P 100.0 8.7E-27 1.9E-31 241.6 32.7 288 106-409 32-375 (567)
50 PRK05732 2-octaprenyl-6-methox 100.0 3E-27 6.5E-32 239.1 28.4 310 107-442 3-349 (395)
51 PRK08132 FAD-dependent oxidore 100.0 1.3E-26 2.9E-31 243.3 33.5 306 106-435 22-356 (547)
52 PLN02985 squalene monooxygenas 100.0 1.2E-26 2.7E-31 239.4 31.6 286 105-408 41-363 (514)
53 PRK07236 hypothetical protein; 100.0 2.8E-26 6.1E-31 231.0 27.1 317 106-435 5-360 (386)
54 PRK06126 hypothetical protein; 100.0 4.8E-26 1.1E-30 239.2 29.9 304 105-435 5-360 (545)
55 TIGR03219 salicylate_mono sali 99.9 1.5E-26 3.2E-31 235.2 22.9 316 109-438 2-361 (414)
56 PLN02927 antheraxanthin epoxid 99.9 1.8E-24 3.8E-29 225.5 28.8 290 105-410 79-406 (668)
57 KOG2614 Kynurenine 3-monooxyge 99.9 1.8E-25 3.9E-30 213.4 17.0 287 108-410 3-327 (420)
58 PRK08255 salicylyl-CoA 5-hydro 99.9 3E-23 6.6E-28 224.4 23.4 290 109-435 2-324 (765)
59 PF04820 Trp_halogenase: Trypt 99.9 1.4E-21 2.9E-26 199.2 23.6 296 109-438 1-373 (454)
60 KOG1298 Squalene monooxygenase 99.9 6.8E-20 1.5E-24 172.1 20.8 289 105-411 43-366 (509)
61 KOG2415 Electron transfer flav 99.8 6.7E-17 1.4E-21 153.4 20.6 322 105-447 74-458 (621)
62 KOG3855 Monooxygenase involved 99.8 4.8E-17 1E-21 154.8 18.0 301 106-419 35-421 (481)
63 PF01266 DAO: FAD dependent ox 99.7 7E-15 1.5E-19 146.2 23.4 200 184-403 140-357 (358)
64 PRK11259 solA N-methyltryptoph 99.6 1.8E-13 4E-18 137.4 26.7 200 184-407 142-359 (376)
65 TIGR03329 Phn_aa_oxid putative 99.6 6.9E-14 1.5E-18 144.0 23.4 205 184-407 176-393 (460)
66 TIGR01373 soxB sarcosine oxida 99.6 1.9E-13 4.1E-18 138.8 25.4 197 186-406 178-383 (407)
67 PRK00711 D-amino acid dehydrog 99.6 1.6E-13 3.4E-18 139.8 24.4 65 186-251 196-261 (416)
68 PRK13369 glycerol-3-phosphate 99.6 9.8E-13 2.1E-17 136.8 29.5 209 186-410 150-379 (502)
69 COG2081 Predicted flavoprotein 99.6 1.6E-14 3.4E-19 138.6 14.3 143 106-249 2-169 (408)
70 PRK12409 D-amino acid dehydrog 99.6 2.3E-13 5E-18 138.3 23.5 64 187-251 193-262 (410)
71 PRK01747 mnmC bifunctional tRN 99.6 3.6E-13 7.7E-18 144.7 24.7 66 185-252 402-468 (662)
72 TIGR01377 soxA_mon sarcosine o 99.6 1.7E-12 3.7E-17 130.6 26.8 67 184-252 138-205 (380)
73 PRK04176 ribulose-1,5-biphosph 99.6 3.5E-14 7.5E-19 133.9 13.5 137 106-248 24-174 (257)
74 TIGR00292 thiazole biosynthesi 99.6 4.8E-14 1E-18 132.5 14.2 136 106-247 20-170 (254)
75 COG0665 DadA Glycine/D-amino a 99.6 3.6E-13 7.7E-18 135.9 21.4 205 184-407 149-366 (387)
76 PRK12266 glpD glycerol-3-phosp 99.5 5.5E-12 1.2E-16 131.1 28.8 209 186-410 150-380 (508)
77 PF03486 HI0933_like: HI0933-l 99.5 1E-13 2.2E-18 138.7 15.3 137 108-248 1-167 (409)
78 COG1635 THI4 Ribulose 1,5-bisp 99.5 8.7E-14 1.9E-18 122.2 11.6 135 107-247 30-178 (262)
79 PF01946 Thi4: Thi4 family; PD 99.5 9.8E-14 2.1E-18 122.8 11.3 136 106-247 16-165 (230)
80 PRK05192 tRNA uridine 5-carbox 99.5 3E-13 6.4E-18 139.5 15.8 142 106-248 3-158 (618)
81 PRK11101 glpA sn-glycerol-3-ph 99.5 1.8E-11 3.8E-16 128.4 28.1 205 185-409 143-371 (546)
82 PLN02464 glycerol-3-phosphate 99.5 2.9E-11 6.3E-16 128.3 29.6 206 186-407 227-453 (627)
83 PRK11728 hydroxyglutarate oxid 99.4 3.6E-12 7.8E-17 128.8 17.4 125 185-320 143-268 (393)
84 KOG2820 FAD-dependent oxidored 99.4 7.5E-11 1.6E-15 110.2 22.0 146 106-252 6-217 (399)
85 TIGR03364 HpnW_proposed FAD de 99.4 4.2E-11 9.1E-16 119.9 22.0 61 185-251 139-201 (365)
86 PRK12779 putative bifunctional 99.4 7.5E-13 1.6E-17 145.4 10.0 162 42-254 248-411 (944)
87 PF01134 GIDA: Glucose inhibit 99.4 5.2E-12 1.1E-16 123.9 13.8 135 109-245 1-150 (392)
88 COG0579 Predicted dehydrogenas 99.4 3.1E-11 6.7E-16 119.8 18.7 169 106-274 2-238 (429)
89 TIGR00136 gidA glucose-inhibit 99.4 1.4E-11 3E-16 127.1 15.4 139 108-247 1-154 (617)
90 PF13738 Pyr_redox_3: Pyridine 99.4 1.3E-12 2.7E-17 119.5 7.0 131 111-248 1-139 (203)
91 COG0578 GlpA Glycerol-3-phosph 99.3 2.4E-10 5.2E-15 115.8 23.3 209 186-410 159-388 (532)
92 PRK12831 putative oxidoreducta 99.3 3.5E-12 7.7E-17 131.0 7.3 157 42-253 88-246 (464)
93 COG0492 TrxB Thioredoxin reduc 99.3 3.9E-11 8.4E-16 115.4 13.0 114 106-248 2-116 (305)
94 TIGR01292 TRX_reduct thioredox 99.3 7.7E-11 1.7E-15 114.4 14.1 112 108-247 1-112 (300)
95 PF08491 SE: Squalene epoxidas 99.2 3.6E-10 7.8E-15 105.0 17.1 155 236-408 2-167 (276)
96 PRK15317 alkyl hydroperoxide r 99.2 1.1E-10 2.4E-15 121.9 14.8 114 105-248 209-323 (517)
97 PLN02661 Putative thiazole syn 99.2 1.8E-10 3.9E-15 111.4 14.5 135 106-247 91-244 (357)
98 PF12831 FAD_oxidored: FAD dep 99.2 8.5E-12 1.9E-16 127.0 5.1 135 109-246 1-149 (428)
99 PRK07233 hypothetical protein; 99.2 9.7E-09 2.1E-13 105.2 27.3 55 192-247 199-254 (434)
100 PRK12775 putative trifunctiona 99.2 1.9E-11 4.1E-16 135.7 7.4 156 42-254 379-536 (1006)
101 KOG2853 Possible oxidoreductas 99.2 1.6E-09 3.4E-14 101.4 18.6 65 185-249 237-322 (509)
102 PRK06481 fumarate reductase fl 99.2 4.8E-10 1E-14 116.7 17.1 144 105-248 59-252 (506)
103 TIGR03143 AhpF_homolog putativ 99.2 1.9E-10 4.2E-15 120.9 14.0 113 106-248 3-115 (555)
104 TIGR01320 mal_quin_oxido malat 99.2 4.6E-10 1E-14 115.6 16.3 91 184-274 171-269 (483)
105 TIGR03140 AhpF alkyl hydropero 99.2 2.3E-10 5E-15 119.4 14.1 113 105-247 210-323 (515)
106 PTZ00383 malate:quinone oxidor 99.2 2.9E-10 6.2E-15 116.9 14.5 66 186-252 206-278 (497)
107 PLN02172 flavin-containing mon 99.2 3.6E-10 7.7E-15 115.7 15.1 139 106-247 9-173 (461)
108 PRK06175 L-aspartate oxidase; 99.2 4.5E-09 9.8E-14 107.2 23.1 142 106-248 3-190 (433)
109 PRK12778 putative bifunctional 99.2 3.1E-11 6.7E-16 131.5 6.7 158 42-254 377-536 (752)
110 TIGR01316 gltA glutamate synth 99.1 5.9E-11 1.3E-15 121.7 7.2 152 43-250 77-233 (449)
111 PRK12769 putative oxidoreducta 99.1 6.2E-11 1.3E-15 127.1 7.6 152 42-249 274-426 (654)
112 PRK09853 putative selenate red 99.1 2E-10 4.3E-15 125.0 11.1 150 43-250 488-638 (1019)
113 COG0493 GltD NADPH-dependent g 99.1 6.8E-11 1.5E-15 119.5 7.0 163 37-255 65-228 (457)
114 TIGR03315 Se_ygfK putative sel 99.1 1.5E-10 3.3E-15 126.4 10.0 150 43-250 486-636 (1012)
115 PF00890 FAD_binding_2: FAD bi 99.1 7.1E-10 1.5E-14 113.1 14.3 60 189-248 139-204 (417)
116 PLN02612 phytoene desaturase 99.1 5.1E-08 1.1E-12 102.7 28.6 55 193-247 310-366 (567)
117 PRK07804 L-aspartate oxidase; 99.1 1.7E-09 3.6E-14 113.4 15.5 145 105-249 14-212 (541)
118 TIGR01318 gltD_gamma_fam gluta 99.1 1.5E-10 3.2E-15 119.2 7.4 152 43-250 89-241 (467)
119 PRK08401 L-aspartate oxidase; 99.1 1.4E-09 2.9E-14 112.2 14.0 141 108-250 2-178 (466)
120 PRK11749 dihydropyrimidine deh 99.1 3.9E-10 8.4E-15 116.2 9.7 150 43-249 89-239 (457)
121 TIGR01424 gluta_reduc_2 glutat 99.1 3.4E-10 7.3E-15 116.2 9.3 134 107-247 2-142 (446)
122 TIGR00275 flavoprotein, HI0933 99.1 1.8E-09 3.9E-14 109.1 14.1 136 111-248 1-161 (400)
123 PRK06467 dihydrolipoamide dehy 99.1 2.1E-09 4.7E-14 110.9 15.0 134 106-248 3-149 (471)
124 PRK12809 putative oxidoreducta 99.1 1.7E-10 3.7E-15 123.3 6.9 154 42-251 257-411 (639)
125 TIGR02730 carot_isom carotene 99.1 8.6E-08 1.9E-12 99.8 26.8 57 191-247 229-286 (493)
126 PRK06452 sdhA succinate dehydr 99.1 1.7E-09 3.7E-14 113.9 14.2 143 106-248 4-199 (566)
127 TIGR00551 nadB L-aspartate oxi 99.1 1.9E-09 4E-14 111.9 14.2 142 107-249 2-191 (488)
128 PRK06116 glutathione reductase 99.1 7.4E-10 1.6E-14 114.0 10.8 134 106-247 3-143 (450)
129 PRK07121 hypothetical protein; 99.1 1.9E-09 4.2E-14 112.0 13.9 59 190-248 176-240 (492)
130 PTZ00139 Succinate dehydrogena 99.1 4.3E-09 9.4E-14 111.7 16.7 144 106-249 28-231 (617)
131 PRK05249 soluble pyridine nucl 99.1 2.6E-09 5.7E-14 110.3 14.8 135 105-247 3-149 (461)
132 PRK05976 dihydrolipoamide dehy 99.1 1.5E-09 3.2E-14 112.3 12.9 137 106-248 3-155 (472)
133 PRK14694 putative mercuric red 99.1 1.9E-09 4.2E-14 111.3 13.7 131 104-247 3-152 (468)
134 TIGR01813 flavo_cyto_c flavocy 99.0 3.1E-09 6.7E-14 109.1 15.0 140 109-248 1-193 (439)
135 PRK06567 putative bifunctional 99.0 3.2E-10 6.9E-15 121.9 7.8 89 44-140 321-416 (1028)
136 PRK12810 gltD glutamate syntha 99.0 2.6E-10 5.5E-15 117.8 7.0 149 44-250 94-243 (471)
137 PRK08274 tricarballylate dehyd 99.0 5.5E-09 1.2E-13 108.1 16.8 143 106-248 3-193 (466)
138 PRK06416 dihydrolipoamide dehy 99.0 3.3E-09 7.1E-14 109.6 15.1 133 106-248 3-147 (462)
139 TIGR01421 gluta_reduc_1 glutat 99.0 8.4E-10 1.8E-14 113.3 10.5 34 107-140 2-35 (450)
140 KOG2852 Possible oxidoreductas 99.0 5.4E-09 1.2E-13 95.7 14.4 148 106-253 9-214 (380)
141 TIGR01812 sdhA_frdA_Gneg succi 99.0 3.9E-09 8.4E-14 111.7 15.7 141 109-249 1-193 (566)
142 PRK09078 sdhA succinate dehydr 99.0 5.8E-09 1.3E-13 110.5 17.0 145 105-249 10-214 (598)
143 PRK13339 malate:quinone oxidor 99.0 6.3E-09 1.4E-13 106.7 16.6 89 186-274 179-276 (497)
144 PRK05257 malate:quinone oxidor 99.0 4.3E-09 9.4E-14 108.6 15.0 88 186-273 178-274 (494)
145 PRK06854 adenylylsulfate reduc 99.0 3.3E-09 7.1E-14 112.5 14.4 143 106-248 10-196 (608)
146 PLN00128 Succinate dehydrogena 99.0 6.4E-09 1.4E-13 110.5 16.2 144 106-249 49-252 (635)
147 PRK10262 thioredoxin reductase 99.0 4.3E-09 9.3E-14 103.4 13.9 113 106-247 5-117 (321)
148 COG2072 TrkA Predicted flavopr 99.0 6.2E-09 1.3E-13 106.1 15.3 133 105-248 6-145 (443)
149 TIGR00562 proto_IX_ox protopor 99.0 1.3E-07 2.9E-12 97.7 25.6 41 206-247 238-279 (462)
150 PRK07573 sdhA succinate dehydr 99.0 6.3E-09 1.4E-13 110.9 15.5 56 194-249 173-234 (640)
151 PLN02507 glutathione reductase 99.0 2.9E-09 6.3E-14 110.5 12.2 139 105-247 23-179 (499)
152 PRK07057 sdhA succinate dehydr 99.0 1E-08 2.2E-13 108.6 16.4 145 105-249 10-213 (591)
153 PRK06370 mercuric reductase; V 99.0 1.8E-09 3.9E-14 111.5 10.1 35 106-140 4-38 (463)
154 PRK06069 sdhA succinate dehydr 99.0 7E-09 1.5E-13 109.8 14.7 144 105-248 3-201 (577)
155 PRK08205 sdhA succinate dehydr 99.0 8.8E-09 1.9E-13 109.0 15.4 60 190-249 139-208 (583)
156 PRK05945 sdhA succinate dehydr 99.0 7.9E-09 1.7E-13 109.3 15.0 143 107-249 3-199 (575)
157 TIGR02734 crtI_fam phytoene de 99.0 2.6E-07 5.7E-12 96.5 26.2 57 191-247 219-276 (502)
158 PTZ00058 glutathione reductase 99.0 2.3E-09 5.1E-14 111.9 10.6 36 105-140 46-81 (561)
159 PRK06115 dihydrolipoamide dehy 99.0 5E-09 1.1E-13 108.1 13.0 133 107-248 3-149 (466)
160 PRK09231 fumarate reductase fl 99.0 1.2E-08 2.7E-13 107.7 15.9 144 106-249 3-198 (582)
161 PLN02546 glutathione reductase 99.0 3.3E-09 7.1E-14 110.9 11.0 131 105-247 77-228 (558)
162 KOG0399 Glutamate synthase [Am 99.0 1.7E-09 3.6E-14 114.2 8.6 151 39-249 1731-1884(2142)
163 PF00070 Pyr_redox: Pyridine n 99.0 9.1E-09 2E-13 78.8 10.7 79 109-231 1-80 (80)
164 KOG2844 Dimethylglycine dehydr 99.0 1.8E-08 3.9E-13 102.0 15.6 70 181-251 177-247 (856)
165 PRK08626 fumarate reductase fl 99.0 8.7E-09 1.9E-13 110.0 14.3 59 191-249 158-222 (657)
166 PRK08958 sdhA succinate dehydr 98.9 1.5E-08 3.2E-13 107.2 15.7 144 106-249 6-208 (588)
167 PRK08010 pyridine nucleotide-d 98.9 7.8E-09 1.7E-13 106.1 13.2 116 107-247 3-131 (441)
168 PRK08071 L-aspartate oxidase; 98.9 1E-08 2.2E-13 106.8 13.8 140 107-248 3-191 (510)
169 PRK07803 sdhA succinate dehydr 98.9 1.3E-08 2.9E-13 108.3 15.0 143 106-248 7-214 (626)
170 PRK06327 dihydrolipoamide dehy 98.9 9.2E-09 2E-13 106.5 13.3 138 106-248 3-158 (475)
171 PF00743 FMO-like: Flavin-bind 98.9 5.7E-09 1.2E-13 108.3 11.7 138 109-248 3-151 (531)
172 KOG0404 Thioredoxin reductase 98.9 5.4E-09 1.2E-13 92.2 9.7 127 107-258 8-134 (322)
173 TIGR01176 fum_red_Fp fumarate 98.9 2.4E-08 5.2E-13 105.4 16.3 143 107-249 3-197 (580)
174 PRK08275 putative oxidoreducta 98.9 7E-09 1.5E-13 109.2 12.3 143 106-248 8-201 (554)
175 PRK06263 sdhA succinate dehydr 98.9 1.8E-08 3.9E-13 106.0 15.3 142 106-248 6-198 (543)
176 PRK07251 pyridine nucleotide-d 98.9 1.1E-08 2.4E-13 104.9 13.4 116 107-247 3-130 (438)
177 PRK11883 protoporphyrinogen ox 98.9 1.1E-06 2.3E-11 90.6 28.2 40 207-247 235-275 (451)
178 PLN02815 L-aspartate oxidase 98.9 1.2E-08 2.5E-13 107.6 13.7 143 105-248 27-223 (594)
179 TIGR02352 thiamin_ThiO glycine 98.9 5.6E-08 1.2E-12 96.0 17.8 196 185-406 131-334 (337)
180 PRK12416 protoporphyrinogen ox 98.9 6.4E-07 1.4E-11 92.6 26.2 49 193-244 228-277 (463)
181 COG1249 Lpd Pyruvate/2-oxoglut 98.9 1.1E-08 2.3E-13 103.6 12.6 139 106-251 3-151 (454)
182 PRK06134 putative FAD-binding 98.9 1.5E-08 3.3E-13 107.1 14.2 58 191-248 217-279 (581)
183 PF07992 Pyr_redox_2: Pyridine 98.9 6.6E-09 1.4E-13 94.6 9.9 109 109-247 1-122 (201)
184 COG3634 AhpF Alkyl hydroperoxi 98.9 2.5E-09 5.5E-14 100.2 6.9 112 106-247 210-325 (520)
185 KOG1399 Flavin-containing mono 98.9 1E-08 2.2E-13 103.3 11.8 135 107-247 6-153 (448)
186 PLN02487 zeta-carotene desatur 98.9 1.7E-06 3.7E-11 90.5 28.6 209 192-409 296-553 (569)
187 PRK07395 L-aspartate oxidase; 98.9 1.2E-08 2.7E-13 106.9 12.5 143 105-248 7-198 (553)
188 TIGR01317 GOGAT_sm_gam glutama 98.9 2.7E-09 5.9E-14 110.3 7.5 147 43-247 93-240 (485)
189 TIGR02732 zeta_caro_desat caro 98.9 5.4E-07 1.2E-11 93.1 24.3 55 193-247 221-284 (474)
190 PRK07843 3-ketosteroid-delta-1 98.9 4.7E-08 1E-12 103.0 16.4 57 192-248 209-270 (557)
191 TIGR02731 phytoene_desat phyto 98.9 9E-07 1.9E-11 91.3 25.5 56 192-247 214-276 (453)
192 COG0445 GidA Flavin-dependent 98.9 3.3E-09 7.1E-14 105.6 6.9 139 107-248 4-159 (621)
193 PRK12834 putative FAD-binding 98.9 4.4E-08 9.4E-13 103.2 15.7 35 106-140 3-37 (549)
194 PRK12842 putative succinate de 98.9 2.8E-08 6.1E-13 105.1 14.2 56 192-247 215-275 (574)
195 PRK08641 sdhA succinate dehydr 98.9 4.6E-08 9.9E-13 103.6 15.6 142 107-248 3-201 (589)
196 PRK13748 putative mercuric red 98.9 1.7E-08 3.6E-13 107.0 12.4 35 105-139 96-130 (561)
197 PF13454 NAD_binding_9: FAD-NA 98.9 4.1E-08 8.8E-13 85.6 12.5 133 111-245 1-155 (156)
198 TIGR01350 lipoamide_DH dihydro 98.8 4E-08 8.6E-13 101.5 14.2 130 108-247 2-143 (461)
199 PRK12845 3-ketosteroid-delta-1 98.8 7.7E-08 1.7E-12 101.1 16.4 57 192-248 218-279 (564)
200 TIGR02053 MerA mercuric reduct 98.8 1.3E-08 2.9E-13 105.0 10.5 33 108-140 1-33 (463)
201 PRK07512 L-aspartate oxidase; 98.8 2.6E-08 5.6E-13 103.8 12.5 59 190-248 135-198 (513)
202 PRK06912 acoL dihydrolipoamide 98.8 1.2E-08 2.5E-13 105.3 9.8 133 109-248 2-145 (458)
203 PRK09077 L-aspartate oxidase; 98.8 5.6E-08 1.2E-12 101.9 15.1 143 106-249 7-209 (536)
204 PRK07818 dihydrolipoamide dehy 98.8 2.7E-08 5.8E-13 102.9 12.3 33 107-139 4-36 (466)
205 PRK12844 3-ketosteroid-delta-1 98.8 4.6E-08 1E-12 102.9 14.1 57 192-248 209-270 (557)
206 TIGR02061 aprA adenosine phosp 98.8 5.7E-08 1.2E-12 102.5 14.6 141 109-249 1-193 (614)
207 PRK12839 hypothetical protein; 98.8 7.2E-08 1.6E-12 101.6 14.9 59 190-248 213-277 (572)
208 PLN02268 probable polyamine ox 98.8 3E-06 6.5E-11 86.9 26.4 42 204-246 209-251 (435)
209 PRK12814 putative NADPH-depend 98.8 6.6E-09 1.4E-13 111.2 7.0 147 44-248 144-291 (652)
210 PRK07208 hypothetical protein; 98.8 2.6E-06 5.7E-11 88.5 26.2 56 192-247 219-280 (479)
211 PRK07845 flavoprotein disulfid 98.8 3.6E-08 7.9E-13 101.7 12.1 136 108-248 2-152 (466)
212 TIGR01438 TGR thioredoxin and 98.8 3.3E-08 7.1E-13 102.3 11.7 135 107-247 2-155 (484)
213 PRK06292 dihydrolipoamide dehy 98.8 2.3E-08 5.1E-13 103.2 10.7 33 107-139 3-35 (460)
214 TIGR01423 trypano_reduc trypan 98.8 3.9E-08 8.3E-13 101.6 12.1 34 106-139 2-36 (486)
215 PRK12837 3-ketosteroid-delta-1 98.8 4.8E-08 1E-12 101.9 13.0 35 106-141 6-40 (513)
216 COG3380 Predicted NAD/FAD-depe 98.8 2.2E-08 4.7E-13 91.3 8.4 126 109-244 3-157 (331)
217 PLN02576 protoporphyrinogen ox 98.8 2.9E-06 6.3E-11 88.6 25.6 38 106-143 11-49 (496)
218 PTZ00052 thioredoxin reductase 98.8 1E-07 2.2E-12 99.2 14.5 33 107-139 5-37 (499)
219 PRK12835 3-ketosteroid-delta-1 98.8 1.5E-07 3.2E-12 99.6 15.6 56 193-248 215-276 (584)
220 PTZ00153 lipoamide dehydrogena 98.8 6.7E-08 1.5E-12 102.6 12.7 35 105-139 114-148 (659)
221 PRK14727 putative mercuric red 98.8 6.3E-08 1.4E-12 100.4 12.1 39 105-143 14-52 (479)
222 PRK09754 phenylpropionate diox 98.8 5.4E-08 1.2E-12 98.4 11.4 106 108-248 4-113 (396)
223 TIGR01372 soxA sarcosine oxida 98.7 5.8E-08 1.3E-12 108.6 12.5 110 106-248 162-287 (985)
224 PRK12843 putative FAD-binding 98.7 1E-07 2.3E-12 100.8 13.7 58 191-248 221-283 (578)
225 PRK05335 tRNA (uracil-5-)-meth 98.7 5E-08 1.1E-12 97.0 10.5 108 108-217 3-126 (436)
226 PTZ00318 NADH dehydrogenase-li 98.7 5.7E-08 1.2E-12 99.1 11.3 109 106-247 9-125 (424)
227 COG1233 Phytoene dehydrogenase 98.7 6.7E-08 1.5E-12 100.1 11.9 55 191-245 224-279 (487)
228 TIGR03169 Nterm_to_SelD pyridi 98.7 6.1E-08 1.3E-12 97.0 11.3 105 109-248 1-108 (364)
229 PRK13984 putative oxidoreducta 98.7 2E-08 4.4E-13 107.1 8.1 151 42-249 231-382 (604)
230 PTZ00306 NADH-dependent fumara 98.7 1.1E-07 2.3E-12 108.1 14.2 38 105-142 407-444 (1167)
231 TIGR01811 sdhA_Bsu succinate d 98.7 1.5E-07 3.3E-12 99.8 14.4 31 110-140 1-31 (603)
232 PRK07846 mycothione reductase; 98.7 3.6E-08 7.9E-13 101.2 9.4 128 108-247 2-140 (451)
233 KOG0042 Glycerol-3-phosphate d 98.7 8.3E-08 1.8E-12 95.2 11.3 143 189-344 222-374 (680)
234 PRK12771 putative glutamate sy 98.7 3.1E-08 6.8E-13 104.7 9.0 146 43-248 88-235 (564)
235 PRK04965 NADH:flavorubredoxin 98.7 1.2E-07 2.5E-12 95.4 12.7 98 108-248 142-240 (377)
236 COG1232 HemY Protoporphyrinoge 98.7 5.3E-06 1.1E-10 83.5 24.0 33 109-141 2-36 (444)
237 TIGR03197 MnmC_Cterm tRNA U-34 98.7 1.1E-06 2.3E-11 88.6 19.2 66 185-252 129-195 (381)
238 KOG3923 D-aspartate oxidase [A 98.7 5.4E-07 1.2E-11 83.3 15.0 179 188-409 148-337 (342)
239 KOG1335 Dihydrolipoamide dehyd 98.7 2.1E-07 4.6E-12 88.7 12.5 136 106-254 38-192 (506)
240 TIGR03378 glycerol3P_GlpB glyc 98.7 4.2E-07 9.2E-12 90.6 14.8 62 189-250 261-326 (419)
241 PRK09754 phenylpropionate diox 98.7 1.7E-07 3.7E-12 94.8 12.3 97 108-248 145-242 (396)
242 PLN02852 ferredoxin-NADP+ redu 98.7 1.2E-07 2.6E-12 97.1 11.0 105 106-254 25-133 (491)
243 PLN02676 polyamine oxidase 98.7 9.4E-06 2E-10 84.1 24.7 42 206-248 245-287 (487)
244 PRK09897 hypothetical protein; 98.7 3.2E-07 6.9E-12 95.1 13.7 137 108-245 2-164 (534)
245 PRK09564 coenzyme A disulfide 98.7 1E-07 2.2E-12 98.0 10.2 107 109-247 2-115 (444)
246 TIGR00137 gid_trmFO tRNA:m(5)U 98.6 1.9E-07 4.1E-12 93.5 11.3 34 108-141 1-34 (433)
247 TIGR02485 CobZ_N-term precorri 98.6 2.2E-07 4.8E-12 95.1 12.0 58 191-248 123-184 (432)
248 COG2509 Uncharacterized FAD-de 98.6 9.9E-07 2.1E-11 86.5 15.4 89 191-279 173-265 (486)
249 PRK13800 putative oxidoreducta 98.6 4.7E-07 1E-11 100.6 14.9 36 106-141 12-47 (897)
250 COG1249 Lpd Pyruvate/2-oxoglut 98.6 7.9E-07 1.7E-11 90.2 14.3 96 108-247 174-272 (454)
251 KOG2311 NAD/FAD-utilizing prot 98.6 1.3E-07 2.8E-12 92.5 8.1 141 105-248 26-187 (679)
252 COG0029 NadB Aspartate oxidase 98.6 3.1E-07 6.7E-12 91.0 10.4 141 109-250 9-199 (518)
253 PRK05249 soluble pyridine nucl 98.6 6.7E-07 1.5E-11 92.4 13.4 97 108-248 176-273 (461)
254 PRK04965 NADH:flavorubredoxin 98.6 5.2E-07 1.1E-11 90.7 12.2 104 108-247 3-111 (377)
255 PRK06116 glutathione reductase 98.6 6.8E-07 1.5E-11 92.1 13.0 98 108-248 168-266 (450)
256 PRK13512 coenzyme A disulfide 98.6 4.4E-07 9.6E-12 93.0 11.6 107 109-248 3-118 (438)
257 COG1053 SdhA Succinate dehydro 98.6 4E-07 8.8E-12 94.8 11.2 143 105-247 4-202 (562)
258 TIGR01421 gluta_reduc_1 glutat 98.6 9.5E-07 2.1E-11 90.8 13.8 98 108-248 167-266 (450)
259 TIGR01350 lipoamide_DH dihydro 98.5 7.7E-07 1.7E-11 92.0 13.1 97 108-248 171-270 (461)
260 TIGR03377 glycerol3P_GlpA glyc 98.5 3.1E-05 6.8E-10 81.1 25.2 206 185-409 122-348 (516)
261 COG3573 Predicted oxidoreducta 98.5 5.5E-07 1.2E-11 84.4 10.6 35 106-140 4-38 (552)
262 PF06039 Mqo: Malate:quinone o 98.5 1.1E-06 2.4E-11 86.9 13.2 66 187-252 177-249 (488)
263 TIGR03452 mycothione_red mycot 98.5 2E-07 4.3E-12 95.8 8.4 32 107-140 2-33 (452)
264 COG1231 Monoamine oxidase [Ami 98.5 1.4E-05 3E-10 78.9 20.5 35 106-140 6-40 (450)
265 PRK06416 dihydrolipoamide dehy 98.5 9.1E-07 2E-11 91.5 13.0 97 108-248 173-273 (462)
266 PRK13977 myosin-cross-reactive 98.5 1.2E-06 2.7E-11 90.2 13.5 57 191-247 226-293 (576)
267 TIGR02374 nitri_red_nirB nitri 98.5 4.2E-07 9E-12 99.5 10.8 103 110-247 1-108 (785)
268 COG1252 Ndh NADH dehydrogenase 98.5 5.6E-07 1.2E-11 89.1 10.4 106 108-248 4-112 (405)
269 PRK05976 dihydrolipoamide dehy 98.5 1.5E-06 3.2E-11 90.1 13.0 98 108-248 181-282 (472)
270 PRK07251 pyridine nucleotide-d 98.5 1.9E-06 4E-11 88.5 13.1 96 108-248 158-254 (438)
271 PRK14989 nitrite reductase sub 98.5 1E-06 2.2E-11 96.5 11.6 104 108-247 4-113 (847)
272 TIGR01423 trypano_reduc trypan 98.5 2E-06 4.4E-11 89.0 13.2 98 108-248 188-289 (486)
273 PRK05329 anaerobic glycerol-3- 98.5 4.1E-06 8.9E-11 84.5 15.0 58 190-247 258-318 (422)
274 TIGR01424 gluta_reduc_2 glutat 98.4 2.1E-06 4.6E-11 88.2 13.2 96 108-247 167-263 (446)
275 PLN02507 glutathione reductase 98.4 2.2E-06 4.7E-11 89.2 13.3 97 108-248 204-301 (499)
276 PRK12770 putative glutamate sy 98.4 9.1E-07 2E-11 88.0 10.0 106 107-246 18-129 (352)
277 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.7E-06 3.6E-11 88.6 12.1 96 108-248 138-234 (427)
278 PRK07845 flavoprotein disulfid 98.4 2.4E-06 5.3E-11 88.3 13.4 97 108-248 178-275 (466)
279 PRK06327 dihydrolipoamide dehy 98.4 2.5E-06 5.4E-11 88.4 13.5 97 108-248 184-285 (475)
280 PF13450 NAD_binding_8: NAD(P) 98.4 2.9E-07 6.2E-12 67.8 4.6 32 112-143 1-32 (68)
281 PRK06912 acoL dihydrolipoamide 98.4 2.7E-06 6E-11 87.7 13.6 97 108-248 171-269 (458)
282 KOG2404 Fumarate reductase, fl 98.4 1.3E-06 2.9E-11 81.5 9.8 140 109-248 11-207 (477)
283 TIGR02374 nitri_red_nirB nitri 98.4 1.5E-06 3.3E-11 95.1 12.2 98 108-248 141-239 (785)
284 PRK07818 dihydrolipoamide dehy 98.4 2.5E-06 5.5E-11 88.2 13.1 97 108-248 173-274 (466)
285 TIGR02053 MerA mercuric reduct 98.4 2.5E-06 5.5E-11 88.2 13.0 97 108-248 167-267 (463)
286 PRK06370 mercuric reductase; V 98.4 3.4E-06 7.4E-11 87.2 13.3 97 108-248 172-272 (463)
287 PRK06115 dihydrolipoamide dehy 98.4 3.8E-06 8.3E-11 86.8 13.5 96 108-247 175-276 (466)
288 PTZ00188 adrenodoxin reductase 98.4 1.3E-06 2.7E-11 88.5 9.5 35 107-141 39-74 (506)
289 PLN02976 amine oxidase 98.4 0.00026 5.6E-09 79.5 27.7 35 106-140 692-726 (1713)
290 PRK07846 mycothione reductase; 98.4 3.7E-06 8E-11 86.4 13.0 96 108-248 167-263 (451)
291 KOG4716 Thioredoxin reductase 98.4 5.7E-06 1.2E-10 77.9 12.7 44 105-148 17-62 (503)
292 PRK14989 nitrite reductase sub 98.4 2.6E-06 5.6E-11 93.4 12.3 99 108-248 146-246 (847)
293 PTZ00363 rab-GDP dissociation 98.4 7.5E-06 1.6E-10 83.3 14.6 56 191-246 232-289 (443)
294 COG3075 GlpB Anaerobic glycero 98.4 2.4E-06 5.2E-11 80.2 10.0 59 190-248 257-318 (421)
295 PLN03000 amine oxidase 98.4 0.00018 3.9E-09 77.9 25.4 36 106-141 183-218 (881)
296 PF13434 K_oxygenase: L-lysine 98.4 8.5E-07 1.8E-11 87.3 7.3 138 107-244 2-156 (341)
297 PRK09564 coenzyme A disulfide 98.3 4.4E-06 9.5E-11 85.9 12.7 96 108-247 150-246 (444)
298 PRK08010 pyridine nucleotide-d 98.3 5.7E-06 1.2E-10 85.0 13.4 96 108-248 159-255 (441)
299 PTZ00058 glutathione reductase 98.3 5.5E-06 1.2E-10 86.9 13.3 97 108-247 238-336 (561)
300 PTZ00052 thioredoxin reductase 98.3 5.5E-06 1.2E-10 86.2 12.9 96 108-248 183-279 (499)
301 COG0446 HcaD Uncharacterized N 98.3 4E-06 8.6E-11 85.1 11.5 98 108-247 137-237 (415)
302 PRK14694 putative mercuric red 98.3 6.7E-06 1.4E-10 85.1 13.0 95 108-248 179-274 (468)
303 PRK13512 coenzyme A disulfide 98.3 4.3E-06 9.4E-11 85.7 11.5 92 108-247 149-241 (438)
304 KOG2665 Predicted FAD-dependen 98.3 5E-06 1.1E-10 77.6 10.1 144 105-248 46-258 (453)
305 KOG0685 Flavin-containing amin 98.3 4.7E-05 1E-09 75.3 17.4 195 210-409 249-491 (498)
306 TIGR03452 mycothione_red mycot 98.3 1E-05 2.2E-10 83.3 13.1 96 108-248 170-266 (452)
307 PLN02546 glutathione reductase 98.3 1.1E-05 2.3E-10 84.8 13.3 98 108-248 253-351 (558)
308 PRK14727 putative mercuric red 98.3 1.2E-05 2.7E-10 83.3 13.5 95 108-248 189-284 (479)
309 PRK06467 dihydrolipoamide dehy 98.2 1.1E-05 2.5E-10 83.4 12.8 96 108-248 175-275 (471)
310 TIGR01438 TGR thioredoxin and 98.2 1.2E-05 2.5E-10 83.4 12.9 95 108-247 181-279 (484)
311 PRK13748 putative mercuric red 98.2 1.6E-05 3.4E-10 84.4 13.0 95 108-248 271-366 (561)
312 PTZ00318 NADH dehydrogenase-li 98.2 1.5E-05 3.3E-10 81.3 12.3 91 109-247 175-280 (424)
313 KOG1336 Monodehydroascorbate/f 98.2 1.6E-05 3.4E-10 78.8 11.1 99 108-248 214-314 (478)
314 COG1252 Ndh NADH dehydrogenase 98.1 8.8E-06 1.9E-10 80.7 9.1 96 107-250 155-265 (405)
315 PRK06292 dihydrolipoamide dehy 98.1 3.5E-05 7.6E-10 79.6 13.3 96 108-247 170-268 (460)
316 COG1148 HdrA Heterodisulfide r 98.1 5.6E-06 1.2E-10 81.6 6.6 39 107-145 124-162 (622)
317 PRK10262 thioredoxin reductase 98.1 1.9E-05 4E-10 77.6 10.5 95 108-247 147-248 (321)
318 COG4529 Uncharacterized protei 98.1 5E-05 1.1E-09 75.7 13.0 138 108-247 2-163 (474)
319 PTZ00153 lipoamide dehydrogena 98.0 5.3E-05 1.1E-09 80.8 12.8 98 108-248 313-428 (659)
320 KOG1800 Ferredoxin/adrenodoxin 98.0 1.4E-05 2.9E-10 76.7 7.2 104 108-256 21-129 (468)
321 KOG0405 Pyridine nucleotide-di 98.0 2.9E-05 6.2E-10 73.6 9.2 128 105-248 18-166 (478)
322 KOG1335 Dihydrolipoamide dehyd 98.0 4E-05 8.7E-10 73.5 9.9 98 107-247 211-314 (506)
323 TIGR03140 AhpF alkyl hydropero 98.0 4.3E-05 9.2E-10 80.0 10.5 91 108-247 353-450 (515)
324 KOG0029 Amine oxidase [Seconda 97.9 9.8E-06 2.1E-10 83.4 5.4 37 105-141 13-49 (501)
325 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.1E-05 2.5E-10 80.0 5.3 35 108-142 2-36 (377)
326 COG2907 Predicted NAD/FAD-bind 97.9 4.4E-05 9.5E-10 72.4 8.5 34 106-140 7-40 (447)
327 KOG4254 Phytoene desaturase [C 97.9 4.9E-05 1.1E-09 74.5 9.0 57 191-247 264-321 (561)
328 TIGR02733 desat_CrtD C-3',4' d 97.9 1.4E-05 2.9E-10 83.4 5.2 57 191-247 232-294 (492)
329 TIGR03169 Nterm_to_SelD pyridi 97.8 0.00013 2.7E-09 73.1 11.2 91 108-247 146-243 (364)
330 TIGR01292 TRX_reduct thioredox 97.8 0.00014 3E-09 70.4 11.2 89 108-246 142-237 (300)
331 PRK12770 putative glutamate sy 97.8 7.3E-05 1.6E-09 74.4 9.3 92 108-247 173-286 (352)
332 COG3349 Uncharacterized conser 97.8 1.7E-05 3.6E-10 79.8 4.6 34 109-142 2-35 (485)
333 TIGR01316 gltA glutamate synth 97.8 9.1E-05 2E-09 76.2 10.1 92 108-246 273-386 (449)
334 COG1206 Gid NAD(FAD)-utilizing 97.8 4.2E-05 9E-10 72.0 6.5 32 108-139 4-35 (439)
335 PRK11749 dihydropyrimidine deh 97.8 0.00012 2.6E-09 75.5 10.0 92 108-246 274-386 (457)
336 PF00732 GMC_oxred_N: GMC oxid 97.7 3.1E-05 6.6E-10 75.1 4.1 33 108-140 1-34 (296)
337 KOG1336 Monodehydroascorbate/f 97.7 0.00016 3.5E-09 71.7 8.9 110 106-254 73-187 (478)
338 PRK15317 alkyl hydroperoxide r 97.7 0.00019 4.2E-09 75.2 10.0 91 108-247 352-449 (517)
339 COG0562 Glf UDP-galactopyranos 97.7 5.5E-05 1.2E-09 71.1 5.1 38 108-145 2-39 (374)
340 KOG2960 Protein involved in th 97.6 5.6E-05 1.2E-09 66.7 4.1 35 107-141 76-112 (328)
341 PLN02568 polyamine oxidase 97.6 7E-05 1.5E-09 78.4 5.6 51 193-246 244-295 (539)
342 KOG3851 Sulfide:quinone oxidor 97.6 2.4E-05 5.1E-10 73.3 1.8 105 105-247 37-145 (446)
343 KOG1346 Programmed cell death 97.6 0.00019 4.1E-09 69.6 7.9 96 108-247 348-449 (659)
344 TIGR02462 pyranose_ox pyranose 97.6 6.8E-05 1.5E-09 77.9 5.3 38 108-145 1-38 (544)
345 PRK02106 choline dehydrogenase 97.6 7.9E-05 1.7E-09 78.9 5.3 36 105-140 3-39 (560)
346 PRK12831 putative oxidoreducta 97.6 0.0004 8.7E-09 71.7 10.2 92 108-246 282-395 (464)
347 PLN02529 lysine-specific histo 97.6 0.00011 2.3E-09 79.0 6.0 35 106-140 159-193 (738)
348 PF13434 K_oxygenase: L-lysine 97.5 0.00074 1.6E-08 66.6 10.5 129 106-245 189-339 (341)
349 COG1251 NirB NAD(P)H-nitrite r 97.5 0.00018 3.9E-09 74.9 6.3 97 109-248 147-244 (793)
350 PRK12810 gltD glutamate syntha 97.5 0.00092 2E-08 69.2 11.6 103 108-247 282-400 (471)
351 PLN02328 lysine-specific histo 97.4 0.0002 4.4E-09 77.4 5.8 35 106-140 237-271 (808)
352 TIGR01372 soxA sarcosine oxida 97.4 0.0014 3.1E-08 73.9 12.3 89 108-248 318-412 (985)
353 PRK12778 putative bifunctional 97.3 0.0023 5E-08 70.3 12.4 92 108-246 571-685 (752)
354 COG3486 IucD Lysine/ornithine 97.2 0.0015 3.2E-08 63.8 8.0 137 105-247 3-157 (436)
355 TIGR01318 gltD_gamma_fam gluta 97.1 0.003 6.4E-08 65.3 10.2 93 108-247 283-398 (467)
356 PRK05675 sdhA succinate dehydr 97.1 0.0059 1.3E-07 64.7 12.5 60 190-249 125-191 (570)
357 KOG2495 NADH-dehydrogenase (ub 97.1 0.0015 3.3E-08 64.0 7.2 97 107-249 218-331 (491)
358 TIGR03143 AhpF_homolog putativ 97.1 0.0028 6E-08 67.1 9.9 92 108-248 144-247 (555)
359 PRK12779 putative bifunctional 97.0 0.0044 9.5E-08 69.2 11.3 32 108-139 448-479 (944)
360 TIGR01810 betA choline dehydro 97.0 0.00054 1.2E-08 72.1 3.9 32 109-140 1-33 (532)
361 TIGR03862 flavo_PP4765 unchara 97.0 0.0077 1.7E-07 59.9 11.6 58 188-248 83-142 (376)
362 PRK12769 putative oxidoreducta 97.0 0.003 6.5E-08 68.2 9.5 92 108-246 469-583 (654)
363 COG2303 BetA Choline dehydroge 97.0 0.00066 1.4E-08 71.3 4.3 36 105-140 5-40 (542)
364 KOG1276 Protoporphyrinogen oxi 96.9 0.00093 2E-08 65.4 4.5 34 107-140 11-46 (491)
365 PLN02785 Protein HOTHEAD 96.9 0.00098 2.1E-08 70.6 4.7 35 105-140 53-87 (587)
366 PRK12814 putative NADPH-depend 96.9 0.0087 1.9E-07 64.5 12.0 33 108-140 324-357 (652)
367 PF00996 GDI: GDP dissociation 96.9 0.016 3.5E-07 58.6 12.8 52 191-243 232-285 (438)
368 PF06100 Strep_67kDa_ant: Stre 96.8 0.011 2.4E-07 59.7 11.3 57 191-247 207-274 (500)
369 PRK01438 murD UDP-N-acetylmura 96.8 0.0034 7.3E-08 65.3 8.1 33 108-140 17-49 (480)
370 KOG2495 NADH-dehydrogenase (ub 96.8 0.0094 2E-07 58.6 10.2 112 105-248 53-171 (491)
371 PRK09853 putative selenate red 96.7 0.012 2.7E-07 65.2 11.8 33 108-140 669-703 (1019)
372 TIGR03467 HpnE squalene-associ 96.7 0.15 3.2E-06 51.7 19.2 57 191-247 197-254 (419)
373 COG0446 HcaD Uncharacterized N 96.7 0.0082 1.8E-07 60.7 9.9 104 110-249 1-108 (415)
374 COG1251 NirB NAD(P)H-nitrite r 96.7 0.011 2.4E-07 62.0 10.3 106 108-249 4-115 (793)
375 PRK13984 putative oxidoreducta 96.7 0.0076 1.6E-07 64.6 9.6 36 370-411 568-603 (604)
376 PF01593 Amino_oxidase: Flavin 96.6 0.086 1.9E-06 53.3 16.8 53 194-247 212-265 (450)
377 PRK12775 putative trifunctiona 96.5 0.012 2.5E-07 66.4 10.0 94 107-247 571-686 (1006)
378 KOG0405 Pyridine nucleotide-di 96.4 0.011 2.3E-07 56.6 7.3 99 106-247 188-287 (478)
379 PLN02172 flavin-containing mon 96.3 0.0049 1.1E-07 63.4 5.2 34 107-140 204-237 (461)
380 PRK12809 putative oxidoreducta 96.3 0.038 8.2E-07 59.6 12.1 34 107-140 451-485 (639)
381 TIGR03315 Se_ygfK putative sel 96.3 0.032 7E-07 62.2 11.5 34 107-140 666-701 (1012)
382 KOG1346 Programmed cell death 96.3 0.016 3.5E-07 56.7 7.9 133 106-252 177-316 (659)
383 COG0492 TrxB Thioredoxin reduc 96.2 0.029 6.3E-07 54.3 9.4 89 108-247 144-238 (305)
384 PRK12771 putative glutamate sy 96.1 0.025 5.4E-07 60.1 9.5 92 107-245 267-378 (564)
385 TIGR02733 desat_CrtD C-3',4' d 96.1 0.68 1.5E-05 48.3 19.7 34 108-141 2-35 (492)
386 TIGR01317 GOGAT_sm_gam glutama 96.0 0.049 1.1E-06 56.6 10.8 33 108-140 284-317 (485)
387 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0099 2.1E-07 51.7 4.5 32 109-140 1-32 (157)
388 KOG2755 Oxidoreductase [Genera 95.6 0.02 4.4E-07 52.7 5.2 30 110-139 2-33 (334)
389 KOG1238 Glucose dehydrogenase/ 95.4 0.014 2.9E-07 60.7 3.8 36 105-140 55-91 (623)
390 KOG4716 Thioredoxin reductase 95.4 0.042 9E-07 52.5 6.7 97 107-247 198-300 (503)
391 PF02737 3HCDH_N: 3-hydroxyacy 95.4 0.021 4.7E-07 50.8 4.7 32 109-140 1-32 (180)
392 TIGR03385 CoA_CoA_reduc CoA-di 95.4 0.074 1.6E-06 54.4 9.1 47 200-247 53-103 (427)
393 PF00743 FMO-like: Flavin-bind 95.4 0.05 1.1E-06 57.0 7.9 34 107-140 183-216 (531)
394 PLN02852 ferredoxin-NADP+ redu 95.3 0.23 5.1E-06 51.4 12.3 36 108-143 167-223 (491)
395 COG0569 TrkA K+ transport syst 95.2 0.022 4.7E-07 52.7 4.2 33 109-141 2-34 (225)
396 PF03721 UDPG_MGDP_dh_N: UDP-g 95.2 0.022 4.7E-07 51.0 3.9 32 109-140 2-33 (185)
397 PRK02705 murD UDP-N-acetylmura 94.9 0.03 6.5E-07 57.9 4.7 32 109-140 2-33 (459)
398 PF02558 ApbA: Ketopantoate re 94.9 0.038 8.1E-07 47.5 4.6 30 110-139 1-30 (151)
399 PRK06249 2-dehydropantoate 2-r 94.5 0.056 1.2E-06 52.8 5.1 35 106-140 4-38 (313)
400 PRK06719 precorrin-2 dehydroge 94.4 0.068 1.5E-06 46.4 4.9 33 107-139 13-45 (157)
401 PRK07819 3-hydroxybutyryl-CoA 94.4 0.054 1.2E-06 52.1 4.6 33 108-140 6-38 (286)
402 TIGR01470 cysG_Nterm siroheme 94.3 0.073 1.6E-06 48.4 5.1 33 108-140 10-42 (205)
403 PF13241 NAD_binding_7: Putati 94.3 0.032 7E-07 44.6 2.4 34 107-140 7-40 (103)
404 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.053 1.1E-06 52.8 4.3 32 109-140 4-35 (308)
405 PRK14106 murD UDP-N-acetylmura 94.2 0.069 1.5E-06 55.0 5.3 33 108-140 6-38 (450)
406 COG3634 AhpF Alkyl hydroperoxi 94.0 0.18 3.9E-06 48.5 7.0 75 107-230 354-430 (520)
407 TIGR01816 sdhA_forward succina 93.9 0.23 5E-06 52.7 8.7 60 190-249 118-183 (565)
408 PF01262 AlaDh_PNT_C: Alanine 93.7 0.092 2E-06 46.1 4.5 34 107-140 20-53 (168)
409 PRK06718 precorrin-2 dehydroge 93.6 0.11 2.5E-06 47.0 5.0 33 107-139 10-42 (202)
410 TIGR02354 thiF_fam2 thiamine b 93.4 0.13 2.8E-06 46.6 4.9 33 108-140 22-55 (200)
411 PRK05708 2-dehydropantoate 2-r 93.4 0.097 2.1E-06 50.9 4.4 33 108-140 3-35 (305)
412 PRK08293 3-hydroxybutyryl-CoA 93.4 0.1 2.2E-06 50.2 4.6 32 109-140 5-36 (287)
413 PRK07066 3-hydroxybutyryl-CoA 93.4 0.096 2.1E-06 51.0 4.3 33 108-140 8-40 (321)
414 PRK12921 2-dehydropantoate 2-r 93.3 0.1 2.2E-06 50.7 4.5 30 109-138 2-31 (305)
415 PF13478 XdhC_C: XdhC Rossmann 93.3 0.089 1.9E-06 44.4 3.5 32 110-141 1-32 (136)
416 PRK09424 pntA NAD(P) transhydr 93.3 0.09 2E-06 54.4 4.2 34 107-140 165-198 (509)
417 PRK09260 3-hydroxybutyryl-CoA 93.1 0.12 2.6E-06 49.8 4.6 32 109-140 3-34 (288)
418 TIGR00518 alaDH alanine dehydr 93.1 0.13 2.7E-06 51.5 4.8 34 107-140 167-200 (370)
419 PRK06522 2-dehydropantoate 2-r 93.0 0.12 2.6E-06 50.0 4.5 32 109-140 2-33 (304)
420 PF01488 Shikimate_DH: Shikima 92.9 0.19 4E-06 42.4 4.9 34 107-140 12-46 (135)
421 COG1004 Ugd Predicted UDP-gluc 92.8 0.12 2.7E-06 50.7 4.2 32 109-140 2-33 (414)
422 PRK07530 3-hydroxybutyryl-CoA 92.8 0.14 3E-06 49.4 4.6 33 108-140 5-37 (292)
423 PF02254 TrkA_N: TrkA-N domain 92.8 0.18 3.8E-06 41.1 4.5 31 110-140 1-31 (116)
424 cd00401 AdoHcyase S-adenosyl-L 92.8 0.14 2.9E-06 51.7 4.5 33 108-140 203-235 (413)
425 PRK06035 3-hydroxyacyl-CoA deh 92.7 0.15 3.2E-06 49.2 4.6 32 109-140 5-36 (291)
426 PF00899 ThiF: ThiF family; I 92.5 0.18 4E-06 42.4 4.4 33 108-140 3-36 (135)
427 PLN02529 lysine-specific histo 92.5 11 0.00024 41.3 18.7 39 370-411 562-600 (738)
428 COG3486 IucD Lysine/ornithine 92.4 0.46 9.9E-06 47.0 7.3 44 203-246 290-339 (436)
429 PRK05808 3-hydroxybutyryl-CoA 92.3 0.18 3.9E-06 48.4 4.6 32 109-140 5-36 (282)
430 PRK04148 hypothetical protein; 92.2 0.12 2.7E-06 43.1 2.8 33 108-141 18-50 (134)
431 cd05292 LDH_2 A subgroup of L- 92.2 0.19 4.1E-06 48.9 4.6 33 109-141 2-36 (308)
432 PF13738 Pyr_redox_3: Pyridine 92.2 0.14 3.1E-06 46.1 3.6 34 107-140 167-200 (203)
433 PF01593 Amino_oxidase: Flavin 92.1 0.14 3E-06 51.8 3.8 33 371-406 418-450 (450)
434 PRK12475 thiamine/molybdopteri 92.0 0.23 5E-06 48.9 5.0 33 108-140 25-58 (338)
435 PLN00112 malate dehydrogenase 92.0 0.51 1.1E-05 48.0 7.5 36 106-141 99-144 (444)
436 PRK15116 sulfur acceptor prote 91.9 0.26 5.6E-06 46.6 4.9 34 107-140 30-64 (268)
437 TIGR02356 adenyl_thiF thiazole 91.7 0.29 6.3E-06 44.4 5.0 34 107-140 21-55 (202)
438 PRK08229 2-dehydropantoate 2-r 91.7 0.22 4.7E-06 49.3 4.5 32 108-139 3-34 (341)
439 PRK14620 NAD(P)H-dependent gly 91.6 0.24 5.2E-06 48.6 4.6 32 109-140 2-33 (326)
440 PRK11064 wecC UDP-N-acetyl-D-m 91.3 0.24 5.3E-06 50.3 4.4 33 108-140 4-36 (415)
441 PLN02328 lysine-specific histo 91.2 15 0.00032 40.6 18.1 41 370-413 643-683 (808)
442 PRK06567 putative bifunctional 91.2 0.94 2E-05 50.4 9.0 31 108-138 551-584 (1028)
443 cd01487 E1_ThiF_like E1_ThiF_l 91.2 0.34 7.3E-06 42.8 4.7 32 109-140 1-33 (174)
444 TIGR03026 NDP-sugDHase nucleot 91.1 0.22 4.8E-06 50.6 4.0 32 109-140 2-33 (411)
445 PRK06130 3-hydroxybutyryl-CoA 91.0 0.29 6.3E-06 47.7 4.6 33 108-140 5-37 (311)
446 PRK07688 thiamine/molybdopteri 91.0 0.33 7.1E-06 47.9 4.9 33 108-140 25-58 (339)
447 COG0686 Ald Alanine dehydrogen 91.0 0.23 4.9E-06 47.2 3.5 35 106-140 167-201 (371)
448 cd01483 E1_enzyme_family Super 91.0 0.39 8.5E-06 40.8 4.9 33 109-141 1-34 (143)
449 TIGR01763 MalateDH_bact malate 90.9 0.31 6.7E-06 47.3 4.6 33 108-140 2-35 (305)
450 TIGR02964 xanthine_xdhC xanthi 90.9 0.37 8E-06 45.1 4.9 35 107-141 100-134 (246)
451 PRK14618 NAD(P)H-dependent gly 90.9 0.35 7.5E-06 47.5 5.0 33 108-140 5-37 (328)
452 PRK12549 shikimate 5-dehydroge 90.9 0.34 7.3E-06 46.5 4.7 33 108-140 128-161 (284)
453 PLN02545 3-hydroxybutyryl-CoA 90.6 0.35 7.6E-06 46.7 4.7 32 109-140 6-37 (295)
454 TIGR00561 pntA NAD(P) transhyd 90.6 0.34 7.4E-06 50.1 4.7 34 107-140 164-197 (511)
455 TIGR02355 moeB molybdopterin s 90.5 0.41 8.9E-06 44.7 4.8 34 108-141 25-59 (240)
456 PRK14619 NAD(P)H-dependent gly 90.5 0.42 9.2E-06 46.5 5.1 33 108-140 5-37 (308)
457 TIGR00936 ahcY adenosylhomocys 90.4 0.34 7.4E-06 48.7 4.5 34 107-140 195-228 (406)
458 PRK08644 thiamine biosynthesis 90.4 0.45 9.8E-06 43.5 4.9 33 108-140 29-62 (212)
459 PLN03209 translocon at the inn 90.1 0.93 2E-05 47.5 7.5 33 108-140 81-114 (576)
460 PRK00094 gpsA NAD(P)H-dependen 90.1 0.4 8.6E-06 46.9 4.6 32 109-140 3-34 (325)
461 PRK00066 ldh L-lactate dehydro 90.1 0.53 1.1E-05 45.9 5.4 35 106-140 5-41 (315)
462 PF00056 Ldh_1_N: lactate/mala 90.0 0.53 1.1E-05 40.0 4.7 32 109-140 2-36 (141)
463 PRK05690 molybdopterin biosynt 89.9 0.5 1.1E-05 44.3 4.9 34 107-140 32-66 (245)
464 PRK02472 murD UDP-N-acetylmura 89.9 0.46 1E-05 48.8 5.1 33 108-140 6-38 (447)
465 TIGR03736 PRTRC_ThiF PRTRC sys 89.8 0.5 1.1E-05 44.0 4.8 35 106-140 10-55 (244)
466 PRK07417 arogenate dehydrogena 89.8 0.39 8.5E-06 46.0 4.2 32 109-140 2-33 (279)
467 PRK08306 dipicolinate synthase 89.6 0.49 1.1E-05 45.7 4.8 34 107-140 152-185 (296)
468 PRK05562 precorrin-2 dehydroge 89.6 0.44 9.5E-06 43.7 4.1 34 106-139 24-57 (223)
469 PRK08328 hypothetical protein; 89.6 0.55 1.2E-05 43.6 4.9 33 108-140 28-61 (231)
470 cd05291 HicDH_like L-2-hydroxy 89.5 0.48 1E-05 46.1 4.6 33 109-141 2-36 (306)
471 PRK04308 murD UDP-N-acetylmura 89.4 0.57 1.2E-05 48.2 5.3 33 108-140 6-38 (445)
472 cd00757 ThiF_MoeB_HesA_family 89.4 0.6 1.3E-05 43.3 4.9 33 108-140 22-55 (228)
473 PRK06223 malate dehydrogenase; 89.3 0.53 1.2E-05 45.8 4.8 34 108-141 3-37 (307)
474 PF03446 NAD_binding_2: NAD bi 89.3 0.57 1.2E-05 40.8 4.5 33 108-140 2-34 (163)
475 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.3 0.47 1E-05 49.4 4.6 34 108-141 6-39 (503)
476 PRK05476 S-adenosyl-L-homocyst 89.2 0.52 1.1E-05 47.7 4.7 33 108-140 213-245 (425)
477 cd01080 NAD_bind_m-THF_DH_Cycl 89.2 0.63 1.4E-05 40.8 4.6 34 106-139 43-77 (168)
478 PLN02353 probable UDP-glucose 89.1 0.45 9.8E-06 49.0 4.3 33 108-140 2-36 (473)
479 COG1748 LYS9 Saccharopine dehy 89.1 0.54 1.2E-05 46.8 4.6 33 108-140 2-35 (389)
480 cd05311 NAD_bind_2_malic_enz N 89.1 0.59 1.3E-05 43.2 4.6 33 108-140 26-61 (226)
481 PTZ00082 L-lactate dehydrogena 89.0 0.64 1.4E-05 45.5 5.0 34 108-141 7-41 (321)
482 cd01075 NAD_bind_Leu_Phe_Val_D 88.9 0.73 1.6E-05 41.7 5.0 33 108-140 29-61 (200)
483 PRK07531 bifunctional 3-hydrox 88.8 0.47 1E-05 49.5 4.2 32 109-140 6-37 (495)
484 cd01078 NAD_bind_H4MPT_DH NADP 88.7 0.74 1.6E-05 41.4 4.9 32 108-139 29-61 (194)
485 COG5044 MRS6 RAB proteins gera 88.7 0.76 1.6E-05 44.8 5.1 38 106-143 5-42 (434)
486 TIGR01915 npdG NADPH-dependent 88.6 0.6 1.3E-05 42.9 4.4 32 109-140 2-34 (219)
487 PRK15057 UDP-glucose 6-dehydro 88.6 0.55 1.2E-05 47.2 4.4 31 109-140 2-32 (388)
488 PRK08268 3-hydroxy-acyl-CoA de 88.6 0.72 1.6E-05 48.2 5.4 34 108-141 8-41 (507)
489 PRK03369 murD UDP-N-acetylmura 88.5 0.58 1.3E-05 48.7 4.7 32 108-139 13-44 (488)
490 cd00755 YgdL_like Family of ac 88.5 0.76 1.6E-05 42.6 4.9 33 108-140 12-45 (231)
491 PRK12548 shikimate 5-dehydroge 88.4 0.66 1.4E-05 44.7 4.7 33 108-140 127-160 (289)
492 KOG4405 GDP dissociation inhib 88.3 0.58 1.3E-05 46.1 4.1 41 106-146 7-47 (547)
493 PRK11730 fadB multifunctional 88.3 0.55 1.2E-05 51.2 4.5 33 108-140 314-346 (715)
494 COG1893 ApbA Ketopantoate redu 88.1 0.56 1.2E-05 45.5 4.0 32 109-140 2-33 (307)
495 PF00670 AdoHcyase_NAD: S-aden 88.1 0.66 1.4E-05 40.1 3.9 33 108-140 24-56 (162)
496 cd01339 LDH-like_MDH L-lactate 88.0 0.62 1.3E-05 45.1 4.2 31 110-140 1-32 (300)
497 PRK08223 hypothetical protein; 88.0 0.78 1.7E-05 43.7 4.7 33 108-140 28-61 (287)
498 TIGR02437 FadB fatty oxidation 87.8 0.62 1.3E-05 50.8 4.5 33 108-140 314-346 (714)
499 PLN02494 adenosylhomocysteinas 87.8 0.75 1.6E-05 46.9 4.7 34 107-140 254-287 (477)
500 PRK10669 putative cation:proto 87.7 0.59 1.3E-05 49.6 4.2 34 108-141 418-451 (558)
No 1
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=4.8e-63 Score=505.86 Aligned_cols=471 Identities=79% Similarity=1.250 Sum_probs=395.9
Q ss_pred CccccccccccccccccccCCCcccchhhhhcccccccccCCCCccceeeecccCCCCcccccc-----ccccchhcCCc
Q 011835 1 MEYYCLGARNFAAMAVSPFPTGRTRRKALRVRTKQSAVDCNHSSYKVTARATSNNAGSESCVAV-----KEEDYIKAGGS 75 (476)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~ 75 (476)
|| |+|++|+++|+++++|.++.++++.+.+.... .+.++.+.-|... +...+++.+|+.. +++++++.|++
T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (529)
T PLN02697 1 ME--CLGARNFAAMAVSTSPGWSSRRRRPVRRGNDV-RSSRGLSCTVVAT-RGGKSGSESCVVVDEEFADEEDYIKAGGS 76 (529)
T ss_pred CC--cccccchhheeeeccCCcCcccccccccccch-hhccCceEEEeec-cCcCcCCcceeeeccccccHhhhhhcccc
Confidence 99 99999999999999999888888765333322 1222111111111 1133588899876 56789999999
Q ss_pred ceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHh
Q 011835 76 QLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155 (476)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~ 155 (476)
++++.++++.+++.+|+++..++++.+..+..+||+||||||||+++|+.|++.|++|+|||+..+..+++|+|.+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~ 156 (529)
T PLN02697 77 ELLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKD 156 (529)
T ss_pred chhHHHHHhcCCccccccccccCCCCCcccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHh
Confidence 99999999999999999999999998855677999999999999999999999999999999988888999999999999
Q ss_pred cCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEE
Q 011835 156 LGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVP 235 (476)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~ 235 (476)
+++.+++.+.|....++++++.....+.+|+.++|..|.+.|.+++.+.|+++++++|+++..++++...+.+.+|.+++
T Consensus 157 lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~ 236 (529)
T PLN02697 157 LGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIP 236 (529)
T ss_pred cCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEE
Confidence 99998899999998888887776667888889999999999999999899999888999998876644555667888899
Q ss_pred CceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce
Q 011835 236 CRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR 315 (476)
Q Consensus 236 a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (476)
|++||+|||.+|.++.+.+...+...++.++|+.++++.++++++.+++||++..+...........++|+|++|.++++
T Consensus 237 A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~ 316 (529)
T PLN02697 237 CRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTR 316 (529)
T ss_pred CCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCe
Confidence 99999999999965555443334457889999999999888888888999988655443333455568999999999999
Q ss_pred EEEEeecccCCCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 316 VFFEETCLASKDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
++++.|++.+.+.++.+.+++.+..++...++...++++.+++.+|+++..+...++++++||||+++||.+|+|+..++
T Consensus 317 ~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l 396 (529)
T PLN02697 317 VFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSL 396 (529)
T ss_pred EEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCcccCCCeeEeehhhcCCCCchhhhHHHHH
Confidence 99999888788888889999999999999988888999999999999988887889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHhhcCCCC
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKW 475 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~l~~~ 475 (476)
.+|..+|++|+++++.+.+..... ..-......+.|++.|+.++.+++.+++++++.+.+++++++++||++||+||++
T Consensus 397 ~~A~~~A~~ia~~l~~~~~~~~~~-~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~L~~~ 475 (529)
T PLN02697 397 SEAPKYASVIARILKNVSSGGKLG-TSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFRLPKW 475 (529)
T ss_pred HhHHHHHHHHHHHhhCCccccccc-cccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH
Confidence 999999999999998664111100 0012347889999999999999999999999999999999999999999999987
Q ss_pred C
Q 011835 476 Y 476 (476)
Q Consensus 476 ~ 476 (476)
+
T Consensus 476 ~ 476 (529)
T PLN02697 476 M 476 (529)
T ss_pred H
Confidence 4
No 2
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=1.6e-49 Score=400.99 Aligned_cols=364 Identities=43% Similarity=0.801 Sum_probs=311.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC--CCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL--PFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~--~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
...+||+||||||||+++|+.|++.|++|+|||+.+ ...+++|+|.+.++.+++.+++.+.|....++++........
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 456899999999999999999999999999999864 345789999999999999999999998888877766555667
Q ss_pred cCcceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccc
Q 011835 183 RAYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSV 262 (476)
Q Consensus 183 ~~~~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~ 262 (476)
.+|+.++|..|.+.|.+++.+.|++++.++|++++.+++ .+.|++++|.+++||+||+|||.+|. +.+.... ....+
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~-~~~V~~~dG~~i~A~lVI~AdG~~s~-l~~~~~~-~~~g~ 182 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEES-KSLVVCDDGVKIQASLVLDATGFSRC-LVQYDKP-FNPGY 182 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCC-eEEEEECCCCEEEcCEEEECcCCCcC-ccCCCCC-CCccc
Confidence 788999999999999999998999998889999998776 67888899989999999999998884 3333222 22367
Q ss_pred eeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccc---cCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHH
Q 011835 263 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPS---FESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLM 339 (476)
Q Consensus 263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 339 (476)
+.++|+.++++.++++++.+++|+|+..+...... .....++|+|++|.++++++++.|++..++..+.+.+++.+.
T Consensus 183 Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~ 262 (447)
T PLN02463 183 QVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMV 262 (447)
T ss_pred eeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHH
Confidence 88999999988778888888899988765432111 111226899999999999999999888888888899999999
Q ss_pred HHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCccccc
Q 011835 340 ARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLT 419 (476)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~ 419 (476)
+++..+++...++.+.+++.+|+++..+...++++++||||++++|.+|+|+..++..|..+|++|+++++.+.... +.
T Consensus 263 ~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 341 (447)
T PLN02463 263 ARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNS-FR 341 (447)
T ss_pred HHHHHCCCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcC-CC
Confidence 99998888888888889999999998888889999999999999999999999999999999999999998664211 22
Q ss_pred ccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHhhcCCCCC
Q 011835 420 HEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWY 476 (476)
Q Consensus 420 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~l~~~~ 476 (476)
.....++.|+.+|+.++++++.|++||++.+.+++.++++.||++||+||+++
T Consensus 342 ----~~~~~~~~w~~lw~~~~~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~~~ 394 (447)
T PLN02463 342 ----GDELSAEVWNDLWPIERRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPHY 394 (447)
T ss_pred ----hHHHHHHHHHHhCCHhHhHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCHHH
Confidence 34578999999999999999999999999999999999999999999999864
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=7.2e-40 Score=330.35 Aligned_cols=351 Identities=46% Similarity=0.740 Sum_probs=277.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC--CCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~--~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
||+||||||||+++|+.|++.|++|+|||+.... ..+|++|...++.+++..++.+.|.....+...........++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 8999999999999999999999999999987543 45678888888888887777788877544443333334456677
Q ss_pred eecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccceeEE
Q 011835 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQTAY 266 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~ 266 (476)
.+++..|.+.|.+.+.+.|++++.++|++++.+++..+.|.+.+|++++|++||+|||.+|.. ..... .....++..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~-~~~~~-~~~~~~q~~~ 158 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLV-QYVRF-PLNVGFQVAY 158 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhc-ccccC-CCCceEEEEE
Confidence 899999999999999888999987789888877444677888888889999999999999822 11111 2222566789
Q ss_pred EEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHHHHHHHcC
Q 011835 267 GVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLMARLERLG 346 (476)
Q Consensus 267 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (476)
|+.++++.++++++...++++....... .......++|+|++|.++++++++.+........+.+.+++.+.+++...+
T Consensus 159 G~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (388)
T TIGR01790 159 GVEARLSRPPHGPSSMVIMDARVDQLAA-PELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQRILARLNAQG 237 (388)
T ss_pred EEEEEEcCCCCCCCceEEEecccccccc-ccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHHHHHHHHHHcC
Confidence 9998888767777777777765432110 000012245999999999999998876555455677889999999998888
Q ss_pred CcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhh
Q 011835 347 IQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNEN 426 (476)
Q Consensus 347 ~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~ 426 (476)
+...++.+.+.+.+|+....+...+|+++||||||+++|.+|+|++.|+.+|..+|+.|.+++..+. .
T Consensus 238 ~~~~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~------------~ 305 (388)
T TIGR01790 238 WQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSS------------E 305 (388)
T ss_pred CeeeEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCH------------H
Confidence 8777778788899999887666889999999999999999999999999999999999999886541 2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHhhcCCC
Q 011835 427 ISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPK 474 (476)
Q Consensus 427 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~l~~ 474 (476)
...+.|...|..+..+++.++.+....+..+++++++++|..||++|.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~ 353 (388)
T TIGR01790 306 LATAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRFFQRFFGLPE 353 (388)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHCCCH
Confidence 455666667777788888899999999999999999999999999875
No 4
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=100.00 E-value=1.3e-38 Score=318.07 Aligned_cols=332 Identities=39% Similarity=0.635 Sum_probs=277.6
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCcEEEECCCCCC--CCCcccchHHHHhcC-cchhhhhhcccceeeeCCCCCEEecc
Q 011835 109 DLVVIGCGPAGLALAAES--AKLGLNVGLIGPDLPF--TNNYGVWEDEFRDLG-LEGCIEHVWRDTVVYIDEDEPILIGR 183 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~L--a~~G~~V~liE~~~~~--~~~~G~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
|||||||||||+++|+.| ++.|.+|+|||+.... .+++ .|......++ +++++.+.|....+.++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~ 79 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDY 79 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEEccc
Confidence 899999999999999999 8889999999987655 5544 4444444444 67889999999999888887666567
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccce
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQ 263 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~ 263 (476)
+|..|++..|.+.|.+++...|+.+++++|++++.+++ .+.|.+.+|.+++|++||+|+|..+. ......+|
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~-~~~v~~~~g~~i~a~~VvDa~g~~~~-------~~~~~~~Q 151 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD-GVLVVLADGRTIRARVVVDARGPSSP-------KARPLGLQ 151 (374)
T ss_pred ceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc-eEEEEECCCCEEEeeEEEECCCcccc-------cccccccc
Confidence 88899999999999999996676666999999999887 78888999999999999999995553 12233678
Q ss_pred eEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCC-CCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHHHHH
Q 011835 264 TAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFES-DNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLMARL 342 (476)
Q Consensus 264 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (476)
.++|+.++++.+.++++...+||++.. .. .++.|+|++|.++++++++.|++...+.++.+.+++.+.+++
T Consensus 152 ~f~G~~v~~~~~~f~~~~~~lMD~r~~--------~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l 223 (374)
T PF05834_consen 152 HFYGWEVETDEPVFDPDTATLMDFRVP--------QSADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYL 223 (374)
T ss_pred eeEEEEEeccCCCCCCCceEEEEeccc--------CCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 899999999988899999999999854 33 678999999999999999999988888789999999999999
Q ss_pred HHcCCcccceeEEEEEEeeC--CCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCcccccc
Q 011835 343 ERLGIQVLKTYEEEWSYIPV--GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTH 420 (476)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~ 420 (476)
..+++...++.+.+.+.+|+ .+..+...++++.+|+|++.++|.+|+++..++..|..+|+.|.+. +
T Consensus 224 ~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~---~-------- 292 (374)
T PF05834_consen 224 ERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG---G-------- 292 (374)
T ss_pred HHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc---c--------
Confidence 99999999999999999999 5666777889999999999999999999999999988888777753 1
Q ss_pred cCchhhHHHHHHHhcCcHHHHHHHH-HHHhhHHHHhcCChHHHHHHHHHhhcCCC
Q 011835 421 EQSNENISMQAWNTLWPQERKRQRA-FFLFGLALILQLDIEGIRTFFRTFFRLPK 474 (476)
Q Consensus 421 ~~~~~~~~~~~w~~~~~~e~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~f~~l~~ 474 (476)
.....|...|+++..++.. ++.++++.+..+++++.+.||+.||++|.
T Consensus 293 ------~~~~~~~~~~~~~~~~~~~flr~l~~~~l~~~~~~~~~~f~~~f~~l~~ 341 (374)
T PF05834_consen 293 ------APLRAWSPLWPRERWRDRRFLRVLGLEVLLRLPPDGRRIFFRMFFRLPP 341 (374)
T ss_pred ------ccccccccccHHHHHHHHHHHHHhcchhhcccChhHHHHHHHHHhCCCH
Confidence 2223344555555555555 45789999999999999999999999985
No 5
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=100.00 E-value=1.4e-34 Score=287.57 Aligned_cols=325 Identities=18% Similarity=0.247 Sum_probs=246.4
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCC--CCcccchHHHHhcC---cchhhhhhcccceeeeCCCCCEEe
Q 011835 109 DLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT--NNYGVWEDEFRDLG---LEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~--~~~G~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
||+|||||+||+++|+.|++. |++|+|+|+.+... ..|++|...+.... ++.++.+.|....+.++.. ...+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~-~~~l 79 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKY-RRKL 79 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcch-hhhc
Confidence 899999999999999999997 99999999976544 34666655444332 4567888999888887543 3345
Q ss_pred ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcc
Q 011835 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKV 260 (476)
Q Consensus 182 ~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~ 260 (476)
+.+|..+++..|.+.|.+.+.. + ++ +++|+.++ ++ . |++.+|.+++|++||+|+|.+|..... .
T Consensus 80 ~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~-~--v~l~dg~~~~A~~VI~A~G~~s~~~~~-------~ 144 (370)
T TIGR01789 80 KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--AD-G--VDLAPGTRINARSVIDCRGFKPSAHLK-------G 144 (370)
T ss_pred CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CC-E--EEECCCCEEEeeEEEECCCCCCCcccc-------c
Confidence 6788899999999999877643 3 55 88999883 33 3 444788899999999999988743222 3
Q ss_pred cceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHHH
Q 011835 261 SVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLMA 340 (476)
Q Consensus 261 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (476)
.+|.++|+.+++.. +++++..++|+++.. ...++.|+|++|.++++++++.|.+...+.++.+.+++.+..
T Consensus 145 ~~Q~f~G~~~r~~~-p~~~~~~~lMD~~~~--------q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~ 215 (370)
T TIGR01789 145 GFQVFLGREMRLQE-PHGLENPIIMDATVD--------QLAGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQ 215 (370)
T ss_pred eeeEEEEEEEEEcC-CCCCCccEEEeeecc--------CCCCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHH
Confidence 67899999999985 499999999998743 345679999999999999999998777788899999999999
Q ss_pred HHHHcCCcccceeEEEEEEeeCCCC---C-C-CCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCc
Q 011835 341 RLERLGIQVLKTYEEEWSYIPVGGS---L-P-NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSR 415 (476)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~p~~~~---~-~-~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~ 415 (476)
++...++...+++..+.+.+|+... . + ...++++++|||||+++|.+|||++.++++|..|++.+. +++..-.
T Consensus 216 ~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~ 293 (370)
T TIGR01789 216 YARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLA 293 (370)
T ss_pred HHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchh
Confidence 9988888888998888899998331 2 2 234569999999999999999999999999888888774 1111100
Q ss_pred ccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHH-HHHHHHhhcCCCC
Q 011835 416 GRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGI-RTFFRTFFRLPKW 475 (476)
Q Consensus 416 ~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~f~~l~~~ 475 (476)
..+ ..|+.++.++..+++++..+++..+..+. .++|.+||+||.+
T Consensus 294 ~~~---------------~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~f~l~~~ 339 (370)
T TIGR01789 294 AFI---------------DSRARRHWSKTGYYRLLNRMLFFAAKPEKRVRVFQRFYGLREG 339 (370)
T ss_pred hhh---------------hHHHHHHHHHhHHHHHHHHHHhccCCchhHHHHHHHHhCCCHH
Confidence 011 12233334455566665555555555544 8999999999853
No 6
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.6e-33 Score=281.09 Aligned_cols=331 Identities=19% Similarity=0.211 Sum_probs=218.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc--ccchHHHHhcCcc-hhhhhhcccceeeeCCCCCEEec--
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY--GVWEDEFRDLGLE-GCIEHVWRDTVVYIDEDEPILIG-- 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~--G~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 182 (476)
|||+||||||||+++|+.|++.|++|+|+|+..+....+ ++....++.+++. ..+...+....++.+.+......
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 699999999999999999999999999999873333333 4556677777774 34455666666655554332221
Q ss_pred --cCc-ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecC------c--eEEECceEEEccCCCCCCcc
Q 011835 183 --RAY-GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH------D--MIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 183 --~~~-~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~------g--~~i~a~~vV~A~G~~S~~~~ 251 (476)
.++ +.++|..|++.|.+++.+.|++++.++|+++..+++ .+.|.+.+ + .+++||+||+|||.+|....
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~-~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r 159 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRD-GVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAK 159 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCC-eEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHH
Confidence 223 258999999999999999999999557999988776 55566543 2 47999999999999996544
Q ss_pred ccccCCCcccceeEEEEEEEeeC--CCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCC
Q 011835 252 EYEVGGPKVSVQTAYGVEVEVEN--NPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGL 329 (476)
Q Consensus 252 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 329 (476)
.+..+... .+..++...+..+. ..++++...++- .. .....+|.|++|.++ .+.++..... ...
T Consensus 160 ~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~p~~y~wv~P~~~-~~~vg~~~~~--~~~ 225 (388)
T TIGR02023 160 ELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYY-GG---------EVSPDFYGWVFPKGD-HIAVGTGTGT--HGF 225 (388)
T ss_pred HcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEE-CC---------CcCCCceEEEeeCCC-eeEEeEEECC--CCC
Confidence 33222111 12122222222121 112333332211 00 112236899999985 5667664321 222
Q ss_pred ChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHh
Q 011835 330 PFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 409 (476)
Q Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l 409 (476)
+...+.+.+.+.+ +....+......+.+|+....++..++++++|||||+++|++|+|++.||.+|..+|++|.+++
T Consensus 226 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 226 DAKQLQANLRRRA---GLDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CHHHHHHHHHHhh---CCCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444432 2222344444556678755555667999999999999999999999999999999999999998
Q ss_pred ccCCCcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHh
Q 011835 410 KHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTF 469 (476)
Q Consensus 410 ~~~~~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f 469 (476)
+.+. ...|+ .|++.|++.+.+++...+. ...+..++++.++.+++.+
T Consensus 303 ~~~~-~~~L~-------~Y~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 349 (388)
T TIGR02023 303 QNGD-ATDLR-------HYERKFMKLYGTTFRVLRV-----LQMVYYRSDRRREVFVEMC 349 (388)
T ss_pred hcCC-HHHHH-------HHHHHHHHHHHHHHHHHHH-----HHHHHccCHHHHHHHHHHh
Confidence 7543 34566 9999999888877744333 3444467777777666554
No 7
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=3.6e-33 Score=283.63 Aligned_cols=335 Identities=19% Similarity=0.192 Sum_probs=216.2
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcc--cchHHHHhcCcch-hhhhhcccceeeeCCCCCEE
Q 011835 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG--VWEDEFRDLGLEG-CIEHVWRDTVVYIDEDEPIL 180 (476)
Q Consensus 104 ~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G--~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 180 (476)
+...+||+||||||||+++|+.|+++|++|+|+|+..+....+| +....++.+++.. .+...+....++.+.+....
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 45679999999999999999999999999999998765544443 4566777777743 34444444444444433333
Q ss_pred ec-----cCc-ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcC--CceEEEEecC-------c--eEEECceEEEcc
Q 011835 181 IG-----RAY-GRVSRHLLHEELLRRCVESGVSYLSSKVESITEST--SGHRLVACEH-------D--MIVPCRLATVAS 243 (476)
Q Consensus 181 ~~-----~~~-~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~--~~~~~v~~~~-------g--~~i~a~~vV~A~ 243 (476)
+. .++ +.++|..|++.|.+++.+.|++++..+++++.... ++.+.|.+.+ | .+++||+||+||
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 22 122 35899999999999999999999955687776432 2245555432 2 479999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEEEEeeCC----CCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEE
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVEVEVENN----PYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFE 319 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (476)
|.+|.....+.... .....++...+..+ .+..+...+. +.. ...+.+|.|++|.++ .+.+|
T Consensus 196 G~~S~vrr~lg~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---------~~~p~~Y~WifP~g~-~~~VG 260 (450)
T PLN00093 196 GANSRVAKDIDAGD----YDYAIAFQERIKIPDDKMEYYEDLAEMY-VGD---------DVSPDFYGWVFPKCD-HVAVG 260 (450)
T ss_pred CcchHHHHHhCCCC----cceeEEEEEEEeCChhhccccCCeEEEE-eCC---------CCCCCceEEEEECCC-cEEEE
Confidence 99996544433221 11233333332211 1122211111 110 112346899999995 56777
Q ss_pred eecccCCCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHH
Q 011835 320 ETCLASKDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAP 399 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~ 399 (476)
....... .+...+.+.+.+.+... ....++.+.....+|......+..+|++|+|||||+++|++|+|++.||.+|.
T Consensus 261 ~g~~~~~--~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~ 337 (450)
T PLN00093 261 TGTVVNK--PAIKKYQRATRNRAKDK-IAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGR 337 (450)
T ss_pred EEEccCC--CChHHHHHHHHHHhhhh-cCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHH
Confidence 7533222 22334444444333211 11134455555667775444567889999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC---CcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHH
Q 011835 400 NYASAIAYILKHDH---SRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRT 468 (476)
Q Consensus 400 ~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 468 (476)
++|++|.+.++.+. +...|. .|++.|++.+.++++....+ ...+.. +++.++.|++.
T Consensus 338 ~AAe~i~~~~~~g~~~~s~~~L~-------~Y~~~~~~~~g~~~~~~~~l----~~~~~~-~~~~~~~~~~~ 397 (450)
T PLN00093 338 MCAEAIVEGSENGTRMVDEADLR-------EYLRKWDKKYWPTYKVLDIL----QKVFYR-SNPAREAFVEM 397 (450)
T ss_pred HHHHHHHHHHhcCCCcCCHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHcC-CcHHHHHHHHH
Confidence 99999999886542 344566 89999998888887777766 333333 44555555543
No 8
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=5.1e-33 Score=279.96 Aligned_cols=336 Identities=18% Similarity=0.207 Sum_probs=218.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcc--cchHHHHhcCcc-hhhhhhcccceeeeCCCCCEEec--
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG--VWEDEFRDLGLE-GCIEHVWRDTVVYIDEDEPILIG-- 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G--~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 182 (476)
+||+||||||||+++|+.|+++|++|+|+|+..+....+| +....++.+++. ..+...+....++.+.+....+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 5899999999999999999999999999999766554453 455667777774 33444454444444433222222
Q ss_pred ---cCc-ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEc--CCceEEEEe--cC-----c--eEEECceEEEccCCCC
Q 011835 183 ---RAY-GRVSRHLLHEELLRRCVESGVSYLSSKVESITES--TSGHRLVAC--EH-----D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 183 ---~~~-~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~--~~~~~~v~~--~~-----g--~~i~a~~vV~A~G~~S 247 (476)
.++ +.++|..|++.|.+++.+.|++++..+++++... .++.+.|++ .+ | .+++||+||+|||.+|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 122 3589999999999999999999994457776532 222444543 21 2 4799999999999999
Q ss_pred CCccccccCCCcccceeEEEEEEEeeCC--CCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccC
Q 011835 248 GKLLEYEVGGPKVSVQTAYGVEVEVENN--PYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLAS 325 (476)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 325 (476)
.....+..... .+...+...+.++.. .+.++...+ .++. ...+.+|.|++|.++ .+.+|......
T Consensus 161 ~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~---------~~~p~gY~WifP~~~-~~~VG~g~~~~ 227 (398)
T TIGR02028 161 RVAKEIDAGDY--SYAIAFQERIRLPDEKMAYYDDLAEM-YVGD---------DVSPDFYGWVFPKCD-HVAVGTGTVAA 227 (398)
T ss_pred HHHHHhCCCCc--ceEEEEEEEeeCChhhcccCCCeEEE-EeCC---------CCCCCceEEEEECCC-eEEEEEEeCCC
Confidence 65444332111 111222222222211 111221111 1110 112346899999995 56677754321
Q ss_pred CCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHH
Q 011835 326 KDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAI 405 (476)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l 405 (476)
....+.+.+.+...+... ....++.+.....+|+.....+..++++++|||||+++|++|+|++.||.+|.++|++|
T Consensus 228 --~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i 304 (398)
T TIGR02028 228 --KPEIKRLQSGIRARAAGK-VAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 304 (398)
T ss_pred --CccHHHHHHhhhhhhhhc-cCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHH
Confidence 122334444433322111 11123444555667776544567799999999999999999999999999999999999
Q ss_pred HHHhccCC---CcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHhhc
Q 011835 406 AYILKHDH---SRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFR 471 (476)
Q Consensus 406 ~~~l~~~~---~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~ 471 (476)
.++++.++ +...|+ .|++.|++.+.+++.....+ ...+.. +++.++.+++.+.+
T Consensus 305 ~~~~~~~~~~~~~~~l~-------~Y~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 361 (398)
T TIGR02028 305 VEESRLGGAVTEEGDLA-------GYLRRWDKEYRPTYRVLDLL----QRVFYR-SNAGREAFVEMCAD 361 (398)
T ss_pred HHHHhcCCCcCCHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHcC-CcHHHHHHHHHhcC
Confidence 99987653 345566 89999998888888877777 555666 88888888877643
No 9
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=8.3e-32 Score=271.35 Aligned_cols=338 Identities=21% Similarity=0.225 Sum_probs=226.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-Cc---ccchHHHHhcCcchh--hhhhcccceeeeCCCCCE
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NY---GVWEDEFRDLGLEGC--IEHVWRDTVVYIDEDEPI 179 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~---G~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 179 (476)
..+||+||||||||++||+.|++.|++|+|+||...... .+ ++....++.+..... +........+++. +...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~-~~~~ 80 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFP-GEKV 80 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEec-CCce
Confidence 358999999999999999999999999999998655442 22 345555665554322 3444444555555 3333
Q ss_pred EeccC---cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcccccc
Q 011835 180 LIGRA---YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEV 255 (476)
Q Consensus 180 ~~~~~---~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~ 255 (476)
.+..+ ...++|..++++|.+++++.|++++ +++++.+..++++.+.+...++.+++|++||+|||.+|.....+..
T Consensus 81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 33322 3369999999999999999999999 9999999998886666666666889999999999999964433332
Q ss_pred CCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHH
Q 011835 256 GGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILK 335 (476)
Q Consensus 256 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (476)
. .........++...... +.+.....++.+ .+.....+|.|++|.+++.+.+|.......+... ...
T Consensus 161 ~-~~~~~~~~~~~~e~~~~-~~~~~~~~~~~~---------~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~-~~~- 227 (396)
T COG0644 161 K-DRKPEDYAIGVKEVIEV-PDDGDVEEFLYG---------PLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLS-PFL- 227 (396)
T ss_pred C-CCChhheeEEeEEEEec-CCCCceEEEEec---------CCccCCCceEEEEECCCceEEEEEEEecCCcCCC-chH-
Confidence 2 11112222333322222 212222222211 1133456999999999999999887554441111 111
Q ss_pred HHHHHHHHHcCCc---c-cceeEEEEEEeeCCCCCCC--CCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHh
Q 011835 336 KKLMARLERLGIQ---V-LKTYEEEWSYIPVGGSLPN--TEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 409 (476)
Q Consensus 336 ~~l~~~~~~~~~~---~-~~~~~~~~~~~p~~~~~~~--~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l 409 (476)
+.+.++....... . .++.+.....+|.++.... ..+++++|||||++++|++|.|+..||.+|.++|++|.++.
T Consensus 228 ~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~ 307 (396)
T COG0644 228 ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEAL 307 (396)
T ss_pred HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHH
Confidence 2233332221111 1 3566667788898876544 67899999999999999999999999999999999999998
Q ss_pred ccCCCcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHhh
Q 011835 410 KHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFF 470 (476)
Q Consensus 410 ~~~~~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~ 470 (476)
..+ .+.|. .|++.|+..+..+...+... ...+..+.+..+..+.+.+.
T Consensus 308 ~~~--~~~l~-------~Y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 355 (396)
T COG0644 308 EGG--EEALA-------EYERLLRKSLAREDLKSLRL----LKLLLRLLDRTLPALIKLLA 355 (396)
T ss_pred HcC--hhHHH-------HHHHHHHHHHHHHHHHHhhh----hhhHHhHhhhhHHHHHHHHh
Confidence 765 45565 79999998877766666665 33333344444555555543
No 10
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.9e-29 Score=244.60 Aligned_cols=282 Identities=21% Similarity=0.202 Sum_probs=179.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccchHHHHhcCcchh-hhhhcccceeeeCCCCCEEec-
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVWEDEFRDLGLEGC-IEHVWRDTVVYIDEDEPILIG- 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 182 (476)
+||+||||||+|+++|+.|++.|++|+|||+..... ...++....+..++.... ....+....++...+......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 699999999999999999999999999999876433 222344444444443221 111222222333333222211
Q ss_pred --cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC-ceEEECceEEEccCCCCCCccccccCCC
Q 011835 183 --RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 183 --~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-g~~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
.....++|..+.+.|.+.+.+.|++++ +++|+++..+++ .+.+.+.+ +.++++|+||+|+|.+|.....+.....
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~ 159 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKE 159 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCC
Confidence 122368999999999999999999998 999999988776 44555444 4689999999999999853332322211
Q ss_pred cccceeEEEEEEEee--CCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHH
Q 011835 259 KVSVQTAYGVEVEVE--NNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKK 336 (476)
Q Consensus 259 ~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (476)
..+...++...++ .....++...++... ....++|.|++|.+++++.++.+..... ......+
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~P~~~~~~~v~~~~~~~~---~~~~~~~ 224 (295)
T TIGR02032 160 --PRELGVAARAEVEMPDEEVDEDFVEVYIDR----------GISPGGYGWVFPKGDGTANVGVGSRSAE---EGEDLKK 224 (295)
T ss_pred --CcceeeEEEEEEecCCcccCcceEEEEcCC----------CcCCCceEEEEeCCCCeEEEeeeeccCC---CCCCHHH
Confidence 2223334333333 222333322221100 1123478999999999888876643322 2233445
Q ss_pred HHHHHHHHcC-CcccceeEEEEEEeeCCCC-CCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHH
Q 011835 337 KLMARLERLG-IQVLKTYEEEWSYIPVGGS-LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAI 405 (476)
Q Consensus 337 ~l~~~~~~~~-~~~~~~~~~~~~~~p~~~~-~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l 405 (476)
.+.+.+...+ ....++.+.....+|.... .++..+|++++|||||+++|++|||+++||+||..+|++|
T Consensus 225 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 225 YLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 5555554432 2222344444455666533 3456799999999999999999999999999999999875
No 11
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=6.2e-30 Score=257.21 Aligned_cols=303 Identities=20% Similarity=0.176 Sum_probs=188.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC-CCCC---Cccc---chHHHHhcCc-chhhhhhc--ccceeeeCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-PFTN---NYGV---WEDEFRDLGL-EGCIEHVW--RDTVVYIDED 176 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~-~~~~---~~G~---~~~~l~~~~~-~~~~~~~~--~~~~~~~~~~ 176 (476)
.+||+||||||+||++|+.|+++|++|+|||+.+ .+.. ...+ ..+.++.+|+ +....... .........+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3699999999999999999999999999999972 2221 1222 3567888888 55443222 1122222222
Q ss_pred C-CEEe-------ccCcceecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEEEec-CceEEECceEEEccCC
Q 011835 177 E-PILI-------GRAYGRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACE-HDMIVPCRLATVASGA 245 (476)
Q Consensus 177 ~-~~~~-------~~~~~~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v~~~-~g~~i~a~~vV~A~G~ 245 (476)
. ...+ +.....+.+..|...|.+.+.+.+ |+++ +++|+.++.+++ .+.++++ ||++++||+||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceEEEEcCCCcEEecCEEEECCCC
Confidence 1 1111 222336899999999999998765 9999 999999999987 4558888 9999999999999999
Q ss_pred CCCCccccccC-CCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc
Q 011835 246 ASGKLLEYEVG-GPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA 324 (476)
Q Consensus 246 ~S~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (476)
+|..+...... .....|. ...+...+... .+.....+..+ ... +.+.++|..++...+-+....
T Consensus 161 ~S~vR~~~~~~~~~~~~y~-~~~l~~~~~~~-~~~~~~~~~~~-----------~~~--~~~~~~p~~~~~~~~~~~~~~ 225 (387)
T COG0654 161 NSAVRRAAGIAEFSGRDYG-QTALVANVEPE-EPHEGRAGERF-----------THA--GPFALLPLPDNRSSVVWSLPP 225 (387)
T ss_pred chHHHHhcCCCCccCCCCC-ceEEEEEeecC-CCCCCeEEEEe-----------cCC--CceEEEecCCCceeEEEECCh
Confidence 99655544411 1110111 12222222221 12222222111 112 237778888543322221111
Q ss_pred ----CCCCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCCCC--CCCCCCCeeEeccccCccCCcchHHHHHHHHh
Q 011835 325 ----SKDGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLSE 397 (476)
Q Consensus 325 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~d 397 (476)
.....+.+.+.+.+.+.+..... ...+... ....+|+... .++..+|++|+|||||.++|+.|||+|+|++|
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~D 304 (387)
T COG0654 226 GPAEDLQGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALED 304 (387)
T ss_pred hhHHHHhcCCHHHHHHHHHHhcCcccc-cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhh
Confidence 11233344444444444432211 3222222 3345565433 35667999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 398 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 398 a~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
|..||++|.+....+.+...|. .|++.++
T Consensus 305 a~~La~~L~~~~~~~~~~~~L~-------~Y~~~R~ 333 (387)
T COG0654 305 AAALAEALAAAPRPGADAAALA-------AYEARRR 333 (387)
T ss_pred HHHHHHHHHHHhhcCccHHHHH-------HHHHhhh
Confidence 9999999999987543345555 6666554
No 12
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=4.3e-30 Score=255.63 Aligned_cols=304 Identities=23% Similarity=0.247 Sum_probs=175.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-Cccc-----chHHHHhcCcchhhhhhc---c--cceeeeCC-
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGV-----WEDEFRDLGLEGCIEHVW---R--DTVVYIDE- 175 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~G~-----~~~~l~~~~~~~~~~~~~---~--~~~~~~~~- 175 (476)
+||+||||||+||++|+.|+++|++|+|||+...... ..|+ ....++.+|+...+...- . ....+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 7999999999999999999999999999998765432 2232 245677778755443222 1 11111110
Q ss_pred CC---------CEEec----cC-cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cc--eEEE
Q 011835 176 DE---------PILIG----RA-YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVP 235 (476)
Q Consensus 176 ~~---------~~~~~----~~-~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g--~~i~ 235 (476)
+. ...+. .+ ...++|..|.+.|.+.+++.|++++ ++++++++.++++ +.+.+. +| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEE
Confidence 00 01111 12 2258899999999999999999999 9999999988874 333332 23 3799
Q ss_pred CceEEEccCCCCCCccccccCCCcccce---eEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcC
Q 011835 236 CRLATVASGAASGKLLEYEVGGPKVSVQ---TAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMS 312 (476)
Q Consensus 236 a~~vV~A~G~~S~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (476)
||+||+|||.+|..+..+.......... ..+++............ ..++. .....+++++|..
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~p~~ 226 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWED-HCFIY-------------SPPSGGFAIIPLE 226 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSC-EEEEE-------------EETTEEEEEEEET
T ss_pred EeeeecccCcccchhhhccccccCcccccccccccccccccccccccc-ccccc-------------cccccceeEeecc
Confidence 9999999999996554443221111111 11222222111101111 12211 1123456889988
Q ss_pred C-ce--EEEEeecccCCCCCChHHHHHHHHHHHHHc-CCcccceeEEEEEEeeC--CCCCCCCCCCeeEeccccCccCCc
Q 011835 313 S-TR--VFFEETCLASKDGLPFDILKKKLMARLERL-GIQVLKTYEEEWSYIPV--GGSLPNTEQRNLAFGAAASMVHPA 386 (476)
Q Consensus 313 ~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~p~--~~~~~~~~~rv~liGDAAh~~~P~ 386 (476)
+ +. +.+.................+.+.+.+... .+............+++ ....++..+||+|+|||||.|+|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~ 306 (356)
T PF01494_consen 227 NGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPF 306 (356)
T ss_dssp TTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CC
T ss_pred CCccceEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccceeEEeccceeeeccc
Confidence 7 22 233333222222223333333443333221 22211111112222332 222355678999999999999999
Q ss_pred chHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 387 TGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 387 ~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
.|||+|+||+||..|++.|....++....+.|+ .|++.++
T Consensus 307 ~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~-------~Y~~~r~ 346 (356)
T PF01494_consen 307 SGQGINMAIEDAAALAELLAAALKGEASEEALK-------AYEQERR 346 (356)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHH-------HHHHHHH
T ss_pred ccCCCCcccccHHHHHHHHHHHhcCCcHHHHHH-------HHHHHHH
Confidence 999999999999999999999887554445555 7777665
No 13
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=5.9e-29 Score=252.40 Aligned_cols=351 Identities=15% Similarity=0.141 Sum_probs=212.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC--Ccc--cchHHHHhc--Cc--chhhhhhccccee-eeCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN--NYG--VWEDEFRDL--GL--EGCIEHVWRDTVV-YIDE 175 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~--~~G--~~~~~l~~~--~~--~~~~~~~~~~~~~-~~~~ 175 (476)
+..+||+||||||||++||+.|++.|++|+||||...... .+| ++...++.+ ++ ...+........+ +.+.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeC
Confidence 4569999999999999999999999999999998754332 222 122222222 11 1111111111111 1111
Q ss_pred CCCEE--ec--------cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccC
Q 011835 176 DEPIL--IG--------RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (476)
Q Consensus 176 ~~~~~--~~--------~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G 244 (476)
..... +. .....+.|..|++.|.+++++.|++++ +++|+++..+++++..+.. ++.+++||+||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADG 161 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccC
Confidence 11111 10 112358899999999999999999999 9999999877663444543 456799999999999
Q ss_pred CCCCCccccccCCCcccceeEEEEEEEeeCCCCC---------CCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce
Q 011835 245 AASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYD---------PSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR 315 (476)
Q Consensus 245 ~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (476)
.+|.....+.............++...+..++.. +....++.... ......++.|++|.. +.
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~--------~~~g~~g~G~~~~~~-d~ 232 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGS--------PSDGLMGGGFLYTNK-DS 232 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCc--------cCCCCCCceEEEEcC-Cc
Confidence 9985433332211111222334444333211000 00111111100 011112456777765 45
Q ss_pred EEEEeecccC---CCCCChHHHHHHHHHH--HHHcCCcccceeEEEEEEeeCCCC---CCCCCCCeeEeccccCccCC--
Q 011835 316 VFFEETCLAS---KDGLPFDILKKKLMAR--LERLGIQVLKTYEEEWSYIPVGGS---LPNTEQRNLAFGAAASMVHP-- 385 (476)
Q Consensus 316 ~~~~~~~~~~---~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~rv~liGDAAh~~~P-- 385 (476)
+.+|..+... ....+...+.+.+... +..+ ..-.+..+.....+|.++. ...+.++++++||||++++|
T Consensus 233 v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~ 311 (429)
T PRK10015 233 ISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLG 311 (429)
T ss_pred EEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccC
Confidence 7777643221 1122233333333211 1111 1112444555667787754 23467999999999999984
Q ss_pred cchHHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHHhc-CcHHHHHHHHHHHh-hHHHHhcCChHHH
Q 011835 386 ATGYSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNTL-WPQERKRQRAFFLF-GLALILQLDIEGI 462 (476)
Q Consensus 386 ~~G~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~~-~~~e~~~~~~~~~~-~~~~~~~l~~~~~ 462 (476)
++|.||+.||.+|.++|+++.++++.++ +...|+ .|++.|++. +.++++..+.+..+ ....+....+..+
T Consensus 312 ~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~-------~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
T PRK10015 312 FTVRGMDLAIASAQAAATTVIAAKERADFSASSLA-------QYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMV 384 (429)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCccccHH-------HHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHH
Confidence 6999999999999999999999998665 677777 999999976 44556666665444 3334555567888
Q ss_pred HHHHHHhhcCC
Q 011835 463 RTFFRTFFRLP 473 (476)
Q Consensus 463 ~~~~~~f~~l~ 473 (476)
+.++..||.++
T Consensus 385 ~~~~~~~~~~~ 395 (429)
T PRK10015 385 ADIMNDMFTID 395 (429)
T ss_pred HHHHHHhcccC
Confidence 89999999874
No 14
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=7.9e-29 Score=249.85 Aligned_cols=302 Identities=18% Similarity=0.189 Sum_probs=183.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcc---c---chHHHHhcCcchhhhhhc----ccceeeeC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG---V---WEDEFRDLGLEGCIEHVW----RDTVVYID 174 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G---~---~~~~l~~~~~~~~~~~~~----~~~~~~~~ 174 (476)
+..+||+||||||+||++|+.|+++|++|+|+|+.+......+ + ....++.+|+.+.+.... ....++ .
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~-~ 81 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY-H 81 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe-c
Confidence 4568999999999999999999999999999998775432111 2 245677788755433211 111222 2
Q ss_pred CCCCEE-ec------cCc-ceecHHHHHHHHHHHHH-HCCCeEE-EEEEEEEEEcCCc-eEEEEecCceEEECceEEEcc
Q 011835 175 EDEPIL-IG------RAY-GRVSRHLLHEELLRRCV-ESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 175 ~~~~~~-~~------~~~-~~i~r~~l~~~L~~~~~-~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.+.... .. .++ ..++|..|.+.|.+.+. ..|++++ +++|++++.++++ .+.|++.+|+++.+|+||+||
T Consensus 82 ~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgAD 161 (388)
T PRK07045 82 DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGAD 161 (388)
T ss_pred CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECC
Confidence 222111 11 121 24789999999999885 4689999 9999999987665 357888889899999999999
Q ss_pred CCCCCCccccc-cC--CCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 244 GAASGKLLEYE-VG--GPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 244 G~~S~~~~~~~-~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
|.+|..+..+. .. .........++... ... ..+.....++ ....++.|++|.+++...+..
T Consensus 162 G~~S~vR~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--------------~~~~~~~~~~p~~~~~~~~~~ 225 (388)
T PRK07045 162 GARSMIRDDVLRMPAERVPYATPMAFGTIA-LTD-SVRECNRLYV--------------DSNQGLAYFYPIGDQATRLVV 225 (388)
T ss_pred CCChHHHHHhhCCCcccCCCCcceeEEEEe-ccC-CccccceEEE--------------cCCCceEEEEEcCCCcEEEEE
Confidence 99996544322 11 11111122333322 111 1111111111 112356788898877654443
Q ss_pred ecccCC-----CCCChHHHHHHHHHHHHHcCCccccee---E--EEEEEeeCCCC--CCCCCCCeeEeccccCccCCcch
Q 011835 321 TCLASK-----DGLPFDILKKKLMARLERLGIQVLKTY---E--EEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATG 388 (476)
Q Consensus 321 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~---~--~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G 388 (476)
...... .....+.+.+.+.+.+ ++.+.+.+ . ..+..+|+... .++..+|++|+|||||.++|+.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G 302 (388)
T PRK07045 226 SFPADEMQGYLADTTRTKLLARLNEFV---GDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITG 302 (388)
T ss_pred EeccccchhccCCCCHHHHHHHHhhhc---CccchHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCcc
Confidence 321111 0111233333333332 12211111 1 12223454432 35678999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHH
Q 011835 389 YSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 389 ~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~ 433 (476)
||+|+||+||..||++|...+.+.. ..+.|+ .|++.++
T Consensus 303 qG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~-------~Ye~~R~ 341 (388)
T PRK07045 303 QGMNLAIEDAGELGACLDLHLSGQIALADALE-------RFERIRR 341 (388)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCchhHHHHHH-------HHHHHhh
Confidence 9999999999999999998765432 234454 6666664
No 15
>PRK08013 oxidoreductase; Provisional
Probab=99.97 E-value=1.1e-28 Score=249.40 Aligned_cols=301 Identities=16% Similarity=0.205 Sum_probs=182.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---------cc---chHHHHhcCcchhhhh----hcccce
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---------GV---WEDEFRDLGLEGCIEH----VWRDTV 170 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---------G~---~~~~l~~~~~~~~~~~----~~~~~~ 170 (476)
.+||+||||||+|+++|+.|++.|++|+|||+.+...... ++ ..+.++++|+.+.+.. ......
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4799999999999999999999999999999876532211 22 2466888888554432 112222
Q ss_pred eeeCCC-CCEE-----eccCc--ceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEE
Q 011835 171 VYIDED-EPIL-----IGRAY--GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (476)
Q Consensus 171 ~~~~~~-~~~~-----~~~~~--~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV 240 (476)
++.... .... .+.++ ..++|..|.+.|.+.+.+. |++++ +++|++++.+++ .+.|++.+|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN-EAFLTLKDGSMLTARLVV 161 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-eEEEEEcCCCEEEeeEEE
Confidence 222211 1111 12222 2589999999999999775 89999 999999988777 677888889899999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce-EEEE
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR-VFFE 319 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~ 319 (476)
+|||.+|..+.....+.....+.. ..+...++... +........+ . +.++++++|..++. ..+.
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~-----------~--~~g~~~~~p~~~~~~~~~~ 226 (400)
T PRK08013 162 GADGANSWLRNKADIPLTFWDYQH-HALVATIRTEE-PHDAVARQVF-----------H--GDGILAFLPLSDPHLCSIV 226 (400)
T ss_pred EeCCCCcHHHHHcCCCccccccCc-EEEEEEEeccC-CCCCEEEEEE-----------c--CCCCEEEEECCCCCeEEEE
Confidence 999999965554433222212211 12222232211 1111111111 1 12457778887643 2333
Q ss_pred eecccCC----CCCChHHHHHHHHHHHHHcCCcccceeE-EEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHH
Q 011835 320 ETCLASK----DGLPFDILKKKLMARLERLGIQVLKTYE-EEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVV 392 (476)
Q Consensus 320 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~ 392 (476)
....... .....+.+.+.+...+. ..+..... .....+|+.. ...+..+|++|+|||||.++|+.|||+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n 303 (400)
T PRK08013 227 WSLSPEEAQRMQQAPEEEFNRALAIAFD---NRLGLCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVN 303 (400)
T ss_pred EEcCHHHHHHHHcCCHHHHHHHHHHHHh---HhhCceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchh
Confidence 2211100 11223334344333322 11111111 1112344332 2356789999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhccCCC---cccccccCchhhHHHHHHH
Q 011835 393 RSLSEAPNYASAIAYILKHDHS---RGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 393 ~Al~da~~la~~l~~~l~~~~~---~~~L~~~~~~~~~~~~~w~ 433 (476)
+|++||..|+++|...+..+.+ ...|+ .|++.++
T Consensus 304 ~gi~Da~~La~~L~~~~~~~~~~~~~~~L~-------~Y~~~R~ 340 (400)
T PRK08013 304 LGFMDAAELIAELRRLHRQGKDIGQHLYLR-------RYERSRK 340 (400)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcccHHHHH-------HHHHHHH
Confidence 9999999999999987654321 12355 7776654
No 16
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.97 E-value=1.1e-28 Score=249.09 Aligned_cols=290 Identities=20% Similarity=0.197 Sum_probs=179.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--------CCcccc---hHHHHhcCcchhhhhh----cccc
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--------NNYGVW---EDEFRDLGLEGCIEHV----WRDT 169 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--------~~~G~~---~~~l~~~~~~~~~~~~----~~~~ 169 (476)
...+||+||||||+|+++|+.|+++|++|+|||+.+... +...+. ...++.+|+.+.+... +...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 345899999999999999999999999999999875321 011222 3567788886554321 2222
Q ss_pred eeeeCCCC-CEEe-----c-cCcc-eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEE
Q 011835 170 VVYIDEDE-PILI-----G-RAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (476)
Q Consensus 170 ~~~~~~~~-~~~~-----~-~~~~-~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV 240 (476)
.++...+. ...+ + ...+ .+++..|.+.|.+.+.+.|++++ +++|++++.+++ .+.|++.+|.++++|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RVRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eEEEEECCCCEEEeCEEE
Confidence 22222111 1111 1 1122 57899999999999998999999 999999998776 567888888889999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
+|||.+|..............+. ..++...++..... ....+. .+... +.++++|..++...+..
T Consensus 163 ~AdG~~S~vr~~~g~~~~~~~~~-~~~~~~~v~~~~~~-~~~~~~-----------~~~~~--g~~~~lP~~~~~~~~~w 227 (392)
T PRK08773 163 AADGAASTLRELAGLPVSRHDYA-QRGVVAFVDTEHPH-QATAWQ-----------RFLPT--GPLALLPFADGRSSIVW 227 (392)
T ss_pred EecCCCchHHHhhcCCceEEEec-cEEEEEEEEccCCC-CCEEEE-----------EeCCC--CcEEEEECCCCceEEEE
Confidence 99999995333222111111111 12333333321111 111111 11122 34677888877655544
Q ss_pred ecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 321 TCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 321 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
...... ...+.+.+.+.+.+.+..+...+.. . .....+|+.. ...+..+|++|+|||||.++|+.|||+|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~a 305 (392)
T PRK08773 228 TLPDAEAERVLALDEAAFSRELTQAFAARLGEVRV-A-SPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLG 305 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEe-c-CCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhh
Confidence 321100 1122344455555555443222211 1 1122345432 235677999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhccC
Q 011835 395 LSEAPNYASAIAYILKHD 412 (476)
Q Consensus 395 l~da~~la~~l~~~l~~~ 412 (476)
|+||..|+++|.+.+..+
T Consensus 306 l~Da~~La~~L~~~~~~~ 323 (392)
T PRK08773 306 LRDVAALQQLVRQAHARR 323 (392)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999877543
No 17
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=6.4e-29 Score=252.34 Aligned_cols=313 Identities=16% Similarity=0.117 Sum_probs=178.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-CCccc-----chHHHHhcCcchhhhhhc---ccceeeeCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGV-----WEDEFRDLGLEGCIEHVW---RDTVVYIDEDEP 178 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~G~-----~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 178 (476)
+||+||||||+||++|+.|+++|++|+|||+..... ...|+ ....++.+|+.+.+.... ....++...+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 389999999999999999999999999999876433 12333 245666888855443221 122222222221
Q ss_pred EE---------eccCcceecHHHHHHHHHHHHHH-CC-CeEE-EEEEEEEEEcCCceEEEEecCc-----eEEECceEEE
Q 011835 179 IL---------IGRAYGRVSRHLLHEELLRRCVE-SG-VSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATV 241 (476)
Q Consensus 179 ~~---------~~~~~~~i~r~~l~~~L~~~~~~-~g-v~i~-~~~v~~i~~~~~~~~~v~~~~g-----~~i~a~~vV~ 241 (476)
.. +..+...++|..|.+.|.+.+.+ .| ++++ +++|++++.++++ +.+.+.++ ++++||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEE
Confidence 11 11122248999999999999865 46 4688 9999999887764 44444432 4899999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCc-eeeeccCCCCCCCccccCCCCCeEEEEEEcCCc------
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSL-MVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST------ 314 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------ 314 (476)
|||.+|..+..+........+.....+...++..++.... ..+.... ...++++|..++
T Consensus 160 ADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~--------------~~~~~~~p~~~~~~~~g~ 225 (413)
T PRK07538 160 ADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHL--------------DGKLVVYPISEPVDADGR 225 (413)
T ss_pred CCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCC--------------CCEEEEEECCCCcccCCc
Confidence 9999996555443222111222222222212221211111 1111100 112333443321
Q ss_pred -eEEEEeec--c----cCCCCCChHHHHHHHHHHHHHcCCc---ccceeE--EEEEEeeCCC---CCCCCCCCeeEeccc
Q 011835 315 -RVFFEETC--L----ASKDGLPFDILKKKLMARLERLGIQ---VLKTYE--EEWSYIPVGG---SLPNTEQRNLAFGAA 379 (476)
Q Consensus 315 -~~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~--~~~~~~p~~~---~~~~~~~rv~liGDA 379 (476)
.+.+-... . ......+.....+.+.+.+..+... +.+++. .....+|+.. ..+|..+|++|+|||
T Consensus 226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDA 305 (413)
T PRK07538 226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDA 305 (413)
T ss_pred eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeeccccccCCCCcccCCcEEEEeec
Confidence 11111100 0 0000111112233344444443221 112222 1223345532 235678999999999
Q ss_pred cCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcCcHHHHHHHH
Q 011835 380 ASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRA 445 (476)
Q Consensus 380 Ah~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~ 445 (476)
||.|+|+.|||+|+||+||..||++|.+. ++....|+ .|++.|+....+.....+.
T Consensus 306 AH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~-------~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 306 AHPMYPVGSNGASQAILDARALADALAAH---GDPEAALA-------AYEAERRPATAQIVLANRL 361 (413)
T ss_pred cCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHH-------HHHHHhhHHHHHHHHHhhh
Confidence 99999999999999999999999999863 22345555 8888887665554444444
No 18
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=1.4e-28 Score=248.00 Aligned_cols=303 Identities=19% Similarity=0.149 Sum_probs=191.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--------CCcccc---hHHHHhcCcchhhhh----hcccceeee
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--------NNYGVW---EDEFRDLGLEGCIEH----VWRDTVVYI 173 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--------~~~G~~---~~~l~~~~~~~~~~~----~~~~~~~~~ 173 (476)
||+||||||||+++|+.|+++|++|+||||..... ...+++ ...++.+|+.+.+.. .+....++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999986532 122333 356777887554432 222333333
Q ss_pred CCCCC-EEec------cCc-ceecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 174 DEDEP-ILIG------RAY-GRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 174 ~~~~~-~~~~------~~~-~~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
..+.. ..+. ..+ ..++|..|.+.|.+.+.+.| ++++ +++|++++.+++ .+.+.+++|+++.+|+||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~~~~vi~ad 159 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HVELTLDDGQQLRARLLVGAD 159 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-eeEEEECCCCEEEeeEEEEeC
Confidence 32211 1111 111 25889999999999998887 9999 999999988776 567888889889999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecc
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCL 323 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (476)
|.+|..+..+........+. ...+...+......+. ..+.. +. ..++++.+|.+++...+.....
T Consensus 160 G~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-----------~~--~~g~~~~~p~~~~~~~~~~~~~ 224 (385)
T TIGR01988 160 GANSKVRQLAGIPTTGWDYG-QSAVVANVKHERPHQG-TAWER-----------FT--PTGPLALLPLPDNRSSLVWTLP 224 (385)
T ss_pred CCCCHHHHHcCCCccccccC-CeEEEEEEEecCCCCC-EEEEE-----------ec--CCCCEEEeECCCCCeEEEEECC
Confidence 99996544332221111111 1112222221111111 11110 01 1245788999988766655422
Q ss_pred cC----CCCCChHHHHHHHHHHHHHcCCccccee-EEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHHHH
Q 011835 324 AS----KDGLPFDILKKKLMARLERLGIQVLKTY-EEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 324 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
.. ....+.+++.+.+.+.+..... .+. ......+|+.. ..++..+|++|+|||||.++|++|||+++||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~ 301 (385)
T TIGR01988 225 PEEAERLLALSDEEFLAELQRAFGSRLG---AITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLR 301 (385)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcC---ceEeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHH
Confidence 11 0123345555666665543321 121 12334455533 23466799999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHHhcCc
Q 011835 397 EAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWNTLWP 437 (476)
Q Consensus 397 da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~~~~~ 437 (476)
||..||+.|...+..+. ....|. .|++.++....
T Consensus 302 da~~La~~L~~~~~~~~~~~~~~~l~-------~y~~~r~~~~~ 338 (385)
T TIGR01988 302 DVAALAEVLEDARRRGEDIGSPRVLQ-------RYERRRRFDNA 338 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-------HHHHHHHHHHH
Confidence 99999999998875432 234555 77777764443
No 19
>PRK07190 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-28 Score=250.89 Aligned_cols=303 Identities=16% Similarity=0.148 Sum_probs=185.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhhh---cccceeeeCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDE 175 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~~ 175 (476)
...+||+||||||+||++|+.|++.|++|+||||..... +..++. .+.++.+|+.+.+... .....++.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 455899999999999999999999999999999876432 222333 2345566664332211 1111111110
Q ss_pred CC---------CE--EeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 176 DE---------PI--LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 176 ~~---------~~--~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.. .. .....+..+.+..+++.|.+.+.+.|++++ +++|++++.+++ .+.+.+.+|++++|++||+||
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~-~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA-GCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eeEEEECCCcEEEeCEEEECC
Confidence 00 00 001112246788899999999999999999 999999998877 456666778889999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEE-EEeeCCCCC--CCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVE-VEVENNPYD--PSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
|.+|..+..+..+.........+.+. ..++. .++ +....+ . . ..+.++++|..++...+-.
T Consensus 162 G~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~-~~~~~~~~~~~-~------------~--~~g~~~~~p~~~~~~r~~~ 225 (487)
T PRK07190 162 GSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDT-DFPKVPEIIVF-Q------------A--ETSDVAWIPREGEIDRFYV 225 (487)
T ss_pred CCCHHHHHHcCCCccccccceeEEEEEEEEcc-CCCCCcceEEE-E------------c--CCCCEEEEECCCCEEEEEE
Confidence 99995443332221111122223222 22221 111 111111 1 0 1133566788765432211
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCCCCC--CCC-CCCeeEeccccCccCCcchHHHHHHHH
Q 011835 321 TCLASKDGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVGGSL--PNT-EQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~~--~~~-~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
. ........+++.+.+...+...... +.+. ....+++.... .+. .+||+|+|||||.++|+.|||+|++|+
T Consensus 226 ~--~~~~~~t~~~~~~~l~~~~~~~~~~---~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq 300 (487)
T PRK07190 226 R--MDTKDFTLEQAIAKINHAMQPHRLG---FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA 300 (487)
T ss_pred E--cCCCCCCHHHHHHHHHHhcCCCCCc---eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence 1 1223344556666655544322222 2222 33455654432 333 699999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcC
Q 011835 397 EAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLW 436 (476)
Q Consensus 397 da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~ 436 (476)
||..|++.|+..+++..+...|. .|++.++...
T Consensus 301 DA~nL~wkLa~v~~g~a~~~lLd-------tY~~eR~p~a 333 (487)
T PRK07190 301 DAFNLIWKLNMVIHHGASPELLQ-------SYEAERKPVA 333 (487)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHH-------HHHHHHHHHH
Confidence 99999999998887765556666 7877775433
No 20
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=2.5e-28 Score=244.69 Aligned_cols=278 Identities=14% Similarity=0.217 Sum_probs=171.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-------CCCcccc---hHHHHhcCcchhhhhh---cccceeeeC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-------TNNYGVW---EDEFRDLGLEGCIEHV---WRDTVVYID 174 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-------~~~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~ 174 (476)
+||+||||||+|+++|+.|++.|++|+|+|+.... ....+++ ...++.+|+.+.+... .....++..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999986321 1222333 3467788875443322 122222222
Q ss_pred CCCC-EEec----cCcc-eecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 175 EDEP-ILIG----RAYG-RVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 175 ~~~~-~~~~----~~~~-~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
.+.. ..+. .+++ .++|..|.+.|.+.+.+.+ ++++ +++++++..+++ .+.|.+.++ +++||+||+|||.+
T Consensus 82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-YSIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eEEEEEcCC-EEeeCEEEEeCCCC
Confidence 2221 1111 1122 5899999999999998765 8999 999999988777 567888776 89999999999999
Q ss_pred CCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce-EEEEeecccC
Q 011835 247 SGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR-VFFEETCLAS 325 (476)
Q Consensus 247 S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~ 325 (476)
|..+..+........|+.++.+. ++... +.....+. .+...++ ++++|..++. ..+-.+....
T Consensus 160 S~vR~~l~~~~~~~~y~~~~~~~--v~~~~-~~~~~~~~-----------~~~~~g~--~~~lPl~~~~~~~~vw~~~~~ 223 (374)
T PRK06617 160 SKVRSHYFANEIEKPYQTALTFN--IKHEK-PHENCAME-----------HFLPLGP--FALLPLKDQYASSVIWSTSSD 223 (374)
T ss_pred chhHHhcCCCcccccCCeEEEEE--EeccC-CCCCEEEE-----------EecCCCC--EEEeECCCCCeEEEEEeCCHH
Confidence 97654443322222344333333 33211 11111111 1122233 7888998764 2222221100
Q ss_pred C----CCCChHHHHHHHHHHHHHcCCccccee-EEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHHHHhH
Q 011835 326 K----DGLPFDILKKKLMARLERLGIQVLKTY-EEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEA 398 (476)
Q Consensus 326 ~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da 398 (476)
. ...+.+.+.+.+...+ +..+..+. ......+|+.. ...+..+|++|+|||||.++|+.|||+|+||+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da 300 (374)
T PRK06617 224 QAALIVNLPVEEVRFLTQRNA---GNSLGKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDI 300 (374)
T ss_pred HHHHHHcCCHHHHHHHHHHhh---chhcCceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHH
Confidence 0 1122233333333222 22222221 12244556543 2356789999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011835 399 PNYASAIA 406 (476)
Q Consensus 399 ~~la~~l~ 406 (476)
..|+++|.
T Consensus 301 ~~La~~L~ 308 (374)
T PRK06617 301 EILSMIVS 308 (374)
T ss_pred HHHHHHHc
Confidence 99999883
No 21
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.97 E-value=3.1e-28 Score=245.64 Aligned_cols=305 Identities=15% Similarity=0.143 Sum_probs=177.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--C---Cccc---chHHHHhcCcchhhhhh---cccceeeeCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--N---NYGV---WEDEFRDLGLEGCIEHV---WRDTVVYIDE 175 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~---~~G~---~~~~l~~~~~~~~~~~~---~~~~~~~~~~ 175 (476)
.+||+||||||+||++|+.|++.|++|+|+|+..... . ...+ ..+.++++|+.+.+... +....++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 3699999999999999999999999999999976421 1 1112 24577788885544321 122223222
Q ss_pred CCCEEec-------cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEE-cCCceEEEEe-cCc--eEEECceEEEcc
Q 011835 176 DEPILIG-------RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITE-STSGHRLVAC-EHD--MIVPCRLATVAS 243 (476)
Q Consensus 176 ~~~~~~~-------~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~-~~~~~~~v~~-~~g--~~i~a~~vV~A~ 243 (476)
+....+. .....+.+..+.+.|.+.+.+.|++++ ++++++++. +++ .+.|++ .+| .+++||+||+||
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~-~~~V~~~~~G~~~~i~ad~vVgAD 159 (392)
T PRK08243 81 GRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD-RPYVTYEKDGEEHRLDCDFIAGCD 159 (392)
T ss_pred CEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC-ceEEEEEcCCeEEEEEeCEEEECC
Confidence 2111111 111235678888889888888899999 999999986 444 455666 356 378999999999
Q ss_pred CCCCCCccccccCCCcccceeE--EEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce--EEEE
Q 011835 244 GAASGKLLEYEVGGPKVSVQTA--YGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR--VFFE 319 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~ 319 (476)
|.+|..+..+...... .+... +++...+...+.......+ ...+.+|.++.|.+++. +++.
T Consensus 160 G~~S~vR~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 224 (392)
T PRK08243 160 GFHGVSRASIPAGALR-TFERVYPFGWLGILAEAPPVSDELIY--------------ANHERGFALCSMRSPTRSRYYLQ 224 (392)
T ss_pred CCCCchhhhcCcchhh-ceecccCceEEEEeCCCCCCCCceEE--------------eeCCCceEEEecCCCCcEEEEEE
Confidence 9999765554322111 11111 1221111111111111111 11123455555554443 2222
Q ss_pred eecccCCCCCChHHHHHHHHHHHHHc-CCcccceeEEEEEEeeCC--CCCCCCCCCeeEeccccCccCCcchHHHHHHHH
Q 011835 320 ETCLASKDGLPFDILKKKLMARLERL-GIQVLKTYEEEWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
..........+.+...+.+.+.+... .+.+..........+|+. ...++..+|++|+|||||.++|++|||+|+||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~ 304 (392)
T PRK08243 225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAAS 304 (392)
T ss_pred ecCCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHH
Confidence 11111112223444455555554321 111110000111222332 223566799999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcC
Q 011835 397 EAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLW 436 (476)
Q Consensus 397 da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~ 436 (476)
||..||+.|...++.+ ....|. .|++.++...
T Consensus 305 Da~~La~~L~~~~~~~-~~~~L~-------~Ye~~r~~r~ 336 (392)
T PRK08243 305 DVRYLARALVEFYREG-DTALLD-------AYSATALRRV 336 (392)
T ss_pred HHHHHHHHHHHHhccC-CHHHHH-------HHHHHHHHHH
Confidence 9999999999887643 244555 7877776443
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=1.9e-28 Score=248.56 Aligned_cols=299 Identities=18% Similarity=0.152 Sum_probs=184.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCC---CCc--ccc---hHHHHhcCcchhhhhhc---ccceeeeC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFT---NNY--GVW---EDEFRDLGLEGCIEHVW---RDTVVYID 174 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~---~~~--G~~---~~~l~~~~~~~~~~~~~---~~~~~~~~ 174 (476)
+||+||||||+||++|+.|++.| ++|+|||+.+... ... +++ .+.++.+|+.+.+.... ....++..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999996 9999999976422 122 232 36777888855443221 11222211
Q ss_pred CCC----C--EE------eccCcc-eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEE
Q 011835 175 EDE----P--IL------IGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (476)
Q Consensus 175 ~~~----~--~~------~~~~~~-~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV 240 (476)
.+. . .. .+.+++ .++|..|.+.|.+.+.+.|++++ +++|++++.+++ .+.|.+.+|.++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-GVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EEEEEECCCCEEEeCEEE
Confidence 110 0 11 122333 58999999999999988999999 999999988777 677888888889999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
+|||.+|..+...........+. ..++...+.... ......... +. ..+++|++|..+++..+..
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-----------~~--~~g~~~~~Pl~~~~~~~~~ 225 (403)
T PRK07333 161 AADGARSKLRELAGIKTVGWDYG-QSGIVCTVEHER-PHGGRAEEH-----------FL--PAGPFAILPLKGNRSSLVW 225 (403)
T ss_pred EcCCCChHHHHHcCCCcccccCC-CEEEEEEEEcCC-CCCCEEEEE-----------eC--CCCceEEeECCCCCeEEEE
Confidence 99999996433322211111111 122222232211 111111111 11 2355788999988765543
Q ss_pred ecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHH
Q 011835 321 TCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVR 393 (476)
Q Consensus 321 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~ 393 (476)
...... ...+.+...+.+.+.+..+. ..+... ....+|... ...+..+|++|+|||||.++|+.|||+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 302 (403)
T PRK07333 226 TERTADAERLVALDDLVFEAELEQRFGHRL---GELKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNL 302 (403)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHhhhhc---CceEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhh
Confidence 211100 01122333444444443321 111111 112344432 23456799999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccC---CCcccccccCchhhHHHHHH
Q 011835 394 SLSEAPNYASAIAYILKHD---HSRGRLTHEQSNENISMQAW 432 (476)
Q Consensus 394 Al~da~~la~~l~~~l~~~---~~~~~L~~~~~~~~~~~~~w 432 (476)
||+||..|+++|...++.+ .+...|+ .|++.+
T Consensus 303 ai~Da~~La~~L~~~~~~~~~~~~~~~L~-------~Ye~~R 337 (403)
T PRK07333 303 GLKDVAALAEVVVEAARLGLDIGSLDVLE-------RYQRWR 337 (403)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCHHHHH-------HHHHHH
Confidence 9999999999999887532 1345555 777633
No 23
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.97 E-value=1.2e-28 Score=248.52 Aligned_cols=303 Identities=18% Similarity=0.203 Sum_probs=186.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--CCcccc---hHHHHhcCcchhhhh---hcccceeeeCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVW---EDEFRDLGLEGCIEH---VWRDTVVYIDED 176 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~~~G~~---~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 176 (476)
...+||+||||||+|+++|+.|+++|++|+|||+..... ..++++ ...++.+|+.+.+.. .+....++...+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 456899999999999999999999999999999976442 223332 356677787554432 122233333222
Q ss_pred CC-----EEe-----c-cCcc-eecHHHHHHHHHHHHHHC-CCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 177 EP-----ILI-----G-RAYG-RVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 177 ~~-----~~~-----~-~~~~-~i~r~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.. ..+ + .+++ .+++..+.+.|.+.+.+. ++...+++|++++.+++ .+.|++++|+++++|+||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRED-EVTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC-eEEEEECCCCEEEEeEEEEec
Confidence 21 111 1 1223 588999999999999776 46633999999988777 567888888889999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecc
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCL 323 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (476)
|.+|..+..+........+.. ..+.+.+... .+....... .+.. .++++++|..+++..+.....
T Consensus 164 G~~S~vr~~~g~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~-----------~~~~--~g~~~~~Pl~~~~~~~v~~~~ 228 (388)
T PRK07494 164 GRNSPVREAAGIGVRTWSYPQ-KALVLNFTHS-RPHQNVSTE-----------FHTE--GGPFTQVPLPGRRSSLVWVVR 228 (388)
T ss_pred CCCchhHHhcCCCceecCCCC-EEEEEEEecc-CCCCCEEEE-----------EeCC--CCcEEEEECCCCcEEEEEECC
Confidence 999965444332211111211 1222333321 111111010 0111 234677788766544432211
Q ss_pred cCC----CCCChHHHHHHHHHHHHHcCCccccee-EEEEEEeeCCCC--CCCCCCCeeEeccccCccCCcchHHHHHHHH
Q 011835 324 ASK----DGLPFDILKKKLMARLERLGIQVLKTY-EEEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 324 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
... ...+.+++.+.+.+.+..+ +..+. ......+|+... ..+..+|++|+|||||.++|+.|||+|+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~ 305 (388)
T PRK07494 229 PAEAERLLALSDAALSAAIEERMQSM---LGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLR 305 (388)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh---cCCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHH
Confidence 111 1234455555555554432 11111 112344565433 2456799999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 397 EAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 397 da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
||..|+++|........+...|. .|++.|+
T Consensus 306 Da~~La~~L~~~~~~~~~~~~L~-------~Y~~~R~ 335 (388)
T PRK07494 306 DVATLVEIVEDRPEDPGSAAVLA-------AYDRARR 335 (388)
T ss_pred HHHHHHHHHHhcCCCcchHHHHH-------HHHHHHH
Confidence 99999999987432222344555 7777775
No 24
>PRK06184 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-28 Score=253.50 Aligned_cols=305 Identities=18% Similarity=0.162 Sum_probs=181.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhhh---cccceeeeCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDEDE 177 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 177 (476)
.+||+||||||+||++|+.|+++|++|+||||..... ...+++ .+.++.+|+.+.+... +.....+...+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 4799999999999999999999999999999976442 233443 4567777875433321 111222221111
Q ss_pred CEE----------ecc--Cc-ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe---cCceEEECceEE
Q 011835 178 PIL----------IGR--AY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHDMIVPCRLAT 240 (476)
Q Consensus 178 ~~~----------~~~--~~-~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~---~~g~~i~a~~vV 240 (476)
... ... +. ..+++..+++.|.+.+.+.|++++ +++|++++.+++ .+.+++ .++++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD-GVTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC-cEEEEEEeCCCeEEEEeCEEE
Confidence 000 011 11 257889999999999988899999 999999998877 455555 556789999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc-eEEEE
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST-RVFFE 319 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~ 319 (476)
+|||++|..+..+........+.....+...+.....+...... + .....+++.++|..++ .+.+.
T Consensus 162 gADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~p~~~~~~~~~~ 228 (502)
T PRK06184 162 GADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ--W-----------PDGDMGMIALCPLPGTDLFQIQ 228 (502)
T ss_pred ECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE--c-----------cCCCCcEEEEEEccCCCeEEEE
Confidence 99999996544332221111111101111122211111111111 1 1111144566777654 33332
Q ss_pred eecccC-CCCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCCCC--CCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 320 ETCLAS-KDGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 320 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
...... ......+.+.+.+...+. +....+... ....+++... ..+..+||+|+|||||.++|+.|||+|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi 305 (502)
T PRK06184 229 APLPPGGEPDLSADGLTALLAERTG---RTDIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSV 305 (502)
T ss_pred EEcCCCccCCCCHHHHHHHHHHhcC---CCCcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchH
Confidence 221111 122334445444444432 111112111 1223333222 245679999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcC
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLW 436 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~ 436 (476)
+||..||+.|+..+++ .....|. .|++.++...
T Consensus 306 ~DA~~LawkLa~vl~g-~~~~lL~-------~Ye~eR~p~~ 338 (502)
T PRK06184 306 QDAYNLGWKLAAVLAG-APEALLD-------TYEEERRPVA 338 (502)
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHH-------HHHHHHHHHH
Confidence 9999999999988876 4445565 7877776433
No 25
>PRK07588 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-28 Score=246.85 Aligned_cols=301 Identities=15% Similarity=0.092 Sum_probs=182.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC---ccc---chHHHHhcCcchhhhh---hcccceeeeCCCCCE
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGV---WEDEFRDLGLEGCIEH---VWRDTVVYIDEDEPI 179 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~---~G~---~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~ 179 (476)
||+||||||+||++|+.|++.|++|+|+||....... .++ ..+.++.+|+.+.+.. .+....++...+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 8999999999999999999999999999987654321 122 2467778887544332 122233332222211
Q ss_pred E----------eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 180 L----------IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 180 ~----------~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
. .+.++..++|..|.+.|.+.+. .|++++ +++|++++.+++ .+.|.+++|+++++|+||+|||.+|.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRD-GVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCC-eEEEEECCCCEEEeCEEEECCCCCcc
Confidence 1 1123346899999999988664 489999 999999998777 57788899988999999999999997
Q ss_pred CccccccCCCcccceeEEEEEE-EeeCCCCCC-CceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc--
Q 011835 249 KLLEYEVGGPKVSVQTAYGVEV-EVENNPYDP-SLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA-- 324 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-- 324 (476)
.+......... .....+..+ ........+ ....+..+ . ....++.++|..+++..+-.....
T Consensus 160 vR~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~g~~~~~~p~~~~~~~~~~~~~~~~ 225 (391)
T PRK07588 160 VRRLVFGPERD--FEHYLGCKVAACVVDGYRPRDERTYVLY-----------N-EVGRQVARVALRGDRTLFLFIFRAEH 225 (391)
T ss_pred chhhccCCccc--eEEEcCcEEEEEEcCCCCCCCCceEEEE-----------e-CCCCEEEEEecCCCCeEEEEEEEcCC
Confidence 65543221111 111111111 111111111 11111111 1 112357777887765433222111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCcccceeE---E--EEEEeeC--CCCCCCCCCCeeEeccccCccCCcchHHHHHHHHh
Q 011835 325 SKDGLPFDILKKKLMARLERLGIQVLKTYE---E--EWSYIPV--GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSE 397 (476)
Q Consensus 325 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~p~--~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~d 397 (476)
.......+...+.+.+.+..+.+....+.. . .....+. .....+..+|++|+|||||.++|+.|||+|+||+|
T Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieD 305 (391)
T PRK07588 226 DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITE 305 (391)
T ss_pred ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHH
Confidence 112233455666666666655443222211 1 1111111 12234667999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHh
Q 011835 398 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 398 a~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~ 434 (476)
|..|++.|.... .+....|. .|++.++.
T Consensus 306 a~~La~~L~~~~--~~~~~al~-------~Y~~~R~~ 333 (391)
T PRK07588 306 AYVLAGELARAG--GDHRRAFD-------AYEKRLRP 333 (391)
T ss_pred HHHHHHHHHhcc--CCHHHHHH-------HHHHHHHH
Confidence 999999997532 12234454 77777653
No 26
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=2.3e-28 Score=248.80 Aligned_cols=303 Identities=18% Similarity=0.165 Sum_probs=180.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-----CCccc---chHHHHhcCcchhhhhhc---ccceeee
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-----NNYGV---WEDEFRDLGLEGCIEHVW---RDTVVYI 173 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-----~~~G~---~~~~l~~~~~~~~~~~~~---~~~~~~~ 173 (476)
...+||+||||||||+++|+.|++.|++|+|||+.+... ..+.+ ..+.|+.+|+.+.+.... ....+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 346899999999999999999999999999999976532 11223 346677888855443221 1112221
Q ss_pred CCCC-CEEec------cCcc-eecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecC-c--eEEECceEE
Q 011835 174 DEDE-PILIG------RAYG-RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH-D--MIVPCRLAT 240 (476)
Q Consensus 174 ~~~~-~~~~~------~~~~-~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~-g--~~i~a~~vV 240 (476)
..+. ...+. ...+ .+.+..|.+.|.+.+.+. |++++ +++|++++.+++ .+.|++.+ + .+++||+||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 96 ADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD-AATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-eeEEEEccCCcceEEeeeEEE
Confidence 1111 11111 1112 233446888888888664 79999 999999988776 56677653 2 469999999
Q ss_pred EccCCCCCCccccccCCCccc-ceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEE
Q 011835 241 VASGAASGKLLEYEVGGPKVS-VQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFE 319 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (476)
+|||.+|..+..+........ .+..+. +.+.... ......+.. +.. .++++++|..++...+.
T Consensus 175 gADG~~S~vR~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~-----------~~~--~g~~~~~p~~~~~~~~~ 238 (415)
T PRK07364 175 AADGARSPIRQAAGIKTKGWKYWQSCVT--ATVKHEA-PHNDIAYER-----------FWP--SGPFAILPLPGNRCQIV 238 (415)
T ss_pred EeCCCCchhHHHhCCCceeecCCCEEEE--EEEEccC-CCCCEEEEE-----------ecC--CCCeEEeECCCCCEEEE
Confidence 999999965443322211111 112222 2222111 111111110 111 23477889887765443
Q ss_pred eecccC----CCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHH
Q 011835 320 ETCLAS----KDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVR 393 (476)
Q Consensus 320 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~ 393 (476)
...... ....+.+++.+.+.+.+..+...+. .. .....+|+.. ..++..+|++|+|||||.++|+.|||+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 316 (415)
T PRK07364 239 WTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLE-LL-GDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNL 316 (415)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCce-ec-CCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhH
Confidence 321110 0122345555666666554432221 11 1222345432 23567799999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHH
Q 011835 394 SLSEAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 394 Al~da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~ 433 (476)
||+||..|+++|...++.+. +...|+ .|++.++
T Consensus 317 al~DA~~La~~L~~~~~~~~~~~~~~~L~-------~Y~~~R~ 352 (415)
T PRK07364 317 GIRDAAALAQVLQTAHQRGEDIGSLAVLK-------RYERWRK 352 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHH-------HHHHHHH
Confidence 99999999999998765332 124555 7776554
No 27
>PRK09126 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-28 Score=246.34 Aligned_cols=306 Identities=18% Similarity=0.173 Sum_probs=185.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC----CCcc----c---chHHHHhcCcchhhhhh----ccccee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT----NNYG----V---WEDEFRDLGLEGCIEHV----WRDTVV 171 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~----~~~G----~---~~~~l~~~~~~~~~~~~----~~~~~~ 171 (476)
++||+||||||+|+++|+.|++.|++|+|+||..... ...| + ....++.+|+.+.+... .....+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 4799999999999999999999999999999876421 1122 2 24567777875443211 111222
Q ss_pred eeCCCC-CEEec------cCcc-eecHHHHHHHHHHHHH-HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEE
Q 011835 172 YIDEDE-PILIG------RAYG-RVSRHLLHEELLRRCV-ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (476)
Q Consensus 172 ~~~~~~-~~~~~------~~~~-~i~r~~l~~~L~~~~~-~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~ 241 (476)
+..... ...+. ..++ .+++..+.+.|.+.+. ..|++++ +++|++++.+++ .+.|.+++|++++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GAQVTLANGRRLTARLLVA 161 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eEEEEEcCCCEEEeCEEEE
Confidence 211111 11111 1122 3688889999888874 4699999 999999988766 5678888888999999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEee
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEET 321 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (476)
|||.+|..+..+........+.... +...+........ ..+. + .....+++++|..++...+...
T Consensus 162 AdG~~S~vr~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~------------~~~~~~~~~~P~~~~~~~~~~~ 226 (392)
T PRK09126 162 ADSRFSATRRQLGIGADMHDFGRTM-LVCRMRHELPHHH-TAWE-W------------FGYGQTLALLPLNGHLSSLVLT 226 (392)
T ss_pred eCCCCchhhHhcCCCccccccCCeE-EEEEEeccCCCCC-EEEE-E------------ecCCCCeEEeECCCCCEEEEEE
Confidence 9999996544432221111111111 1112221111111 1111 1 0112357888998877666553
Q ss_pred cccCC----CCCChHHHHHHHHHHHHHcCCcccceeE-EEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 322 CLASK----DGLPFDILKKKLMARLERLGIQVLKTYE-EEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 322 ~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
..... ...+.+.+.+.+.+.+...- ..+.. .....+|+.. ..++..+|++|+|||||.++|+.|||+|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 303 (392)
T PRK09126 227 LPPDQIEALLALDPEAFAAEVTARFKGRL---GAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLG 303 (392)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHhhhc---cCeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhh
Confidence 22111 11223344444444444321 11111 1223344422 234567999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHHhcCcH
Q 011835 395 LSEAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWNTLWPQ 438 (476)
Q Consensus 395 l~da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~~~~~~ 438 (476)
|+||..|+++|...++.+. +...|. .|++.|+.....
T Consensus 304 i~da~~la~~L~~~~~~~~~~~~~~~l~-------~Y~~~r~~~~~~ 343 (392)
T PRK09126 304 LKGQDILARLILAAARRGQDIGAASLLE-------RYERKHRLATRP 343 (392)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHH-------HHHHHHHHHHHH
Confidence 9999999999998875332 234555 888888654443
No 28
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=4.2e-28 Score=245.95 Aligned_cols=300 Identities=17% Similarity=0.168 Sum_probs=181.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC----------C-CCccc---chHHHHhcCcchhhhhh----cccc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF----------T-NNYGV---WEDEFRDLGLEGCIEHV----WRDT 169 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~----------~-~~~G~---~~~~l~~~~~~~~~~~~----~~~~ 169 (476)
+||+||||||+|+++|+.|+++|++|+|||+.+.. . ....+ ....++.+|+.+.+... ....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 69999999999999999999999999999987521 0 11122 34677788886554321 1222
Q ss_pred eeeeCCCCC-EEec------cCc-ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEE
Q 011835 170 VVYIDEDEP-ILIG------RAY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (476)
Q Consensus 170 ~~~~~~~~~-~~~~------~~~-~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV 240 (476)
.++...+.. ..+. ... ..+++..+.+.|.+.+.+.|++++ ++++++++.+++ .+.|++.+|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGD-DWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEEE
Confidence 222222211 1111 111 257888999999999988899999 999999998777 567888888889999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc--e--E
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST--R--V 316 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~--~ 316 (476)
+|||.+|..+..+........+. ...+...+.... +.....+. .+... +.++.+|..++ . .
T Consensus 162 gAdG~~S~vR~~lg~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-----------~~~~~--g~~~~~P~~~~~~~~~~ 226 (405)
T PRK05714 162 AADGANSAVRRLAGCATREWDYL-HHAIVTSVRCSE-PHRATAWQ-----------RFTDD--GPLAFLPLERDGDEHWC 226 (405)
T ss_pred EecCCCchhHHhcCCCcccccCC-ceEEEEEEEcCC-CCCCEEEE-----------EcCCC--CCeEEeeCCCCCCCCeE
Confidence 99999996544333222211222 112222222111 11111111 11222 33677787542 1 1
Q ss_pred EEEeecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCCC--CCCCCCCCeeEeccccCccCCcchH
Q 011835 317 FFEETCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGY 389 (476)
Q Consensus 317 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~ 389 (476)
.+........ ...+.+.+.+.+.+.+.. .+.++... ....+|+.. ...+..+|++|+|||||.++|+.||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQ 303 (405)
T PRK05714 227 SIVWSTTPEEAERLMALDDDAFCAALERAFEG---RLGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQ 303 (405)
T ss_pred EEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH---HhCCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccc
Confidence 1222211100 112334444555444432 22222221 223345433 2356779999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHH
Q 011835 390 SVVRSLSEAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 390 G~~~Al~da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~ 433 (476)
|+|+||+||..|+++|......+. +...|. .|++.++
T Consensus 304 G~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~-------~Ye~~R~ 343 (405)
T PRK05714 304 GVNLGFLDAAVLAEVLLHAAERGERLADVRVLS-------RFERRRM 343 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-------HHHHHHH
Confidence 999999999999999988764331 234555 7777665
No 29
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=1.7e-28 Score=246.15 Aligned_cols=308 Identities=14% Similarity=0.079 Sum_probs=184.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Ccccc---hHHHHhcCcchhhhhh---cccceeeeCCCCCE
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDEDEPI 179 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 179 (476)
||+||||||+||++|+.|++.|++|+|+|+.+.... ..+++ ...++.+|+.+.+... .....++...+...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 799999999999999999999999999998765432 22233 3456666664433221 22223333323221
Q ss_pred E-----eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcccc
Q 011835 180 L-----IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEY 253 (476)
Q Consensus 180 ~-----~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~ 253 (476)
. .+.....++|..|.+.|.+.+. +.+++ +++|++++.+++ .+.|++.+|+++++|+||+|||.+|..+..+
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETD-KVTIHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCC-cEEEEECCCCEEecCEEEECCCcchHHHHHh
Confidence 1 1112236899999999988875 35788 999999987766 6778888998899999999999999655444
Q ss_pred ccCCCcccceeEEEEEEEeeCCCCC--CCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCC-CCC
Q 011835 254 EVGGPKVSVQTAYGVEVEVENNPYD--PSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKD-GLP 330 (476)
Q Consensus 254 ~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~ 330 (476)
...... .+.....+...+.....+ .....++ ...++++++|..++..++......... ...
T Consensus 159 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~---------------~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T PRK06753 159 NADSKV-RYQGYTCFRGLIDDIDLKLPDCAKEYW---------------GTKGRFGIVPLLNNQAYWFITINAKERDPKY 222 (373)
T ss_pred CCCCCc-eEcceEEEEEEeccccccCccceEEEE---------------cCCCEEEEEEcCCCeEEEEEEeccccCCccc
Confidence 322211 111111122222211111 1111111 112467888998887655443211110 011
Q ss_pred hHHHHHHHHHHHHHcCCcccceeEE----EEEEee---CCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHH
Q 011835 331 FDILKKKLMARLERLGIQVLKTYEE----EWSYIP---VGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYAS 403 (476)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~p---~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~ 403 (476)
.+...+.+.+.+..+.+.+..+++. .....+ +.....+..+|++|+|||||.++|+.|||+|+||+||..|++
T Consensus 223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~ 302 (373)
T PRK06753 223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLAN 302 (373)
T ss_pred ccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHH
Confidence 1111233444444443332222211 111112 222234667999999999999999999999999999999999
Q ss_pred HHHHHhccCCCcccccccCchhhHHHHHHHhcCcHHHHHHHHH
Q 011835 404 AIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAF 446 (476)
Q Consensus 404 ~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~ 446 (476)
+|... +..+.|+ .|++.|+.......+..+.+
T Consensus 303 ~L~~~----~~~~al~-------~Y~~~r~~~~~~~~~~s~~~ 334 (373)
T PRK06753 303 CLNAY----DFEKALQ-------RYDKIRVKHTAKVIKRSRKI 334 (373)
T ss_pred Hhhhc----cHHHHHH-------HHHHHhhHHHHHHHHHHHHH
Confidence 99531 2234454 88888876665555544443
No 30
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.97 E-value=4.9e-28 Score=244.44 Aligned_cols=302 Identities=15% Similarity=0.172 Sum_probs=181.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---------Cccc---chHHHHhcCcchhhhhh----ccc
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---------NYGV---WEDEFRDLGLEGCIEHV----WRD 168 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---------~~G~---~~~~l~~~~~~~~~~~~----~~~ 168 (476)
.+.+||+||||||+|+++|+.|++.|++|+|||+...... ...+ ..+.++.+|+.+.+... +..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 4568999999999999999999999999999998753211 0122 24566777775443321 111
Q ss_pred ceeeeCCCCCEE-----ec-cCc-ceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecCceEEECceE
Q 011835 169 TVVYIDEDEPIL-----IG-RAY-GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLA 239 (476)
Q Consensus 169 ~~~~~~~~~~~~-----~~-~~~-~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v 239 (476)
...+........ .. ... ..++|..|.+.|.+.+.+. |++++ +++|+++..+++ .+.|.+.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD-GWELTLADGEEIQAKLV 161 (391)
T ss_pred EEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC-eEEEEECCCCEEEeCEE
Confidence 111111111111 11 112 2588999999999998776 99999 999999988776 57788888888999999
Q ss_pred EEccCCCCCCccccccCCCcccc-eeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEE
Q 011835 240 TVASGAASGKLLEYEVGGPKVSV-QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFF 318 (476)
Q Consensus 240 V~A~G~~S~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 318 (476)
|+|||.+|..+.....+.....+ +..+...+..+.. +....+.. +...++ ..++|..++...+
T Consensus 162 I~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~-----------~~~~g~--~~~~p~~~~~~~~ 225 (391)
T PRK08020 162 IGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP---PGDSTWQQ-----------FTPSGP--RAFLPLFDNWASL 225 (391)
T ss_pred EEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC---CCCEEEEE-----------EcCCCC--EEEeECCCCcEEE
Confidence 99999999643333222111111 2222222222211 11111111 112222 4557877665444
Q ss_pred EeecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHH
Q 011835 319 EETCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVV 392 (476)
Q Consensus 319 ~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~ 392 (476)
........ ...+.+++.+.+.+.+.. .+..+.......+|+.. ...+..+|++|+|||||.++|+.|||+|
T Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n 302 (391)
T PRK08020 226 VWYDSPARIRQLQAMSMAQLQQEIAAHFPA---RLGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVN 302 (391)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhh---hccceEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhH
Confidence 33211000 112334444444444322 22233332334456532 2346679999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHH
Q 011835 393 RSLSEAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 393 ~Al~da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~ 433 (476)
+||+||..|+++|.+..+.+. +...|+ .|++.++
T Consensus 303 ~al~Da~~La~~L~~~~~~~~~~~~~~~L~-------~Y~~~R~ 339 (391)
T PRK08020 303 LGYRDVDALLDVLVNARSYGEAWASEAVLK-------RYQRRRM 339 (391)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHH-------HHHHHHH
Confidence 999999999999998765432 234554 5665553
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.97 E-value=2.8e-28 Score=245.43 Aligned_cols=302 Identities=18% Similarity=0.170 Sum_probs=182.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCCC-------cccc---hHHHHhcCcchhhhhhc---ccceeeeC
Q 011835 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNN-------YGVW---EDEFRDLGLEGCIEHVW---RDTVVYID 174 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~-------~G~~---~~~l~~~~~~~~~~~~~---~~~~~~~~ 174 (476)
||+||||||+|+++|+.|+++| ++|+|+|+....... .+++ ...++.+|+.+.+.... ....+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999987543221 2222 45777888865543221 11111111
Q ss_pred CC-CCEEe-----cc-Cc-ceecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccC
Q 011835 175 ED-EPILI-----GR-AY-GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (476)
Q Consensus 175 ~~-~~~~~-----~~-~~-~~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G 244 (476)
.. ....+ +. .. ..++|..|.+.|.+.+.+ .|++++ +++|++++.+++ .+.|.+.+|.+++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD-YVRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC-eEEEEECCCCEEEeeEEEEecC
Confidence 11 11111 11 11 248999999999999987 499999 999999988776 5678888888899999999999
Q ss_pred CCCCCccccccCCCcccc-eeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc-eEEEEeec
Q 011835 245 AASGKLLEYEVGGPKVSV-QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST-RVFFEETC 322 (476)
Q Consensus 245 ~~S~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~ 322 (476)
.+|..+..+........+ +..+...+.... +.....+..+ .. .+.++++|..++ ...+....
T Consensus 160 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~~--~g~~~~~p~~~~~~~~~~~~~ 223 (382)
T TIGR01984 160 ANSKVRELLSIPTEEHDYNQTALIANIRHEQ---PHQGCAFERF-----------TP--HGPLALLPLKDNYRSSLVWCL 223 (382)
T ss_pred CChHHHHHcCCCCcccccCCEEEEEEEEecC---CCCCEEEEee-----------CC--CCCeEECcCCCCCCEEEEEEC
Confidence 999643333222111111 222222222211 1111111111 11 134667888776 43332221
Q ss_pred ccC----CCCCChHHHHHHHHHHHHHcCCcccceeE-EEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 323 LAS----KDGLPFDILKKKLMARLERLGIQVLKTYE-EEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 323 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
... ....+.+.+.+.+.+.+.. .+..+.. .....+|+.. ...+..+|++|+|||||.++|+.|||+|+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al 300 (382)
T TIGR01984 224 PSKQADTIANLPDAEFLAELQQAFGW---RLGKITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGL 300 (382)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHhh---hccCeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhH
Confidence 110 0112334444454444432 2222221 1222334322 2345679999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcCc
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWP 437 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~ 437 (476)
+||..|+++|............|. .|++.++..+.
T Consensus 301 ~Da~~La~~L~~~~~~~~~~~~l~-------~Y~~~r~~~~~ 335 (382)
T TIGR01984 301 RDVETLAEVLIDARIDLGTYALLQ-------EYLRRRQFDQF 335 (382)
T ss_pred HHHHHHHHHHHHhccCccCHHHHH-------HHHHHHHHHHH
Confidence 999999999987752222234555 77777764443
No 32
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=1e-27 Score=240.81 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=173.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-Cccc-----chHHHHhcCcchhhh-hh--cccceeeeCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGV-----WEDEFRDLGLEGCIE-HV--WRDTVVYIDEDE 177 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~G~-----~~~~l~~~~~~~~~~-~~--~~~~~~~~~~~~ 177 (476)
..||+||||||+||++|+.|++.|++|+|+|+...... ..|+ ..+.++.+|+.+.+. .. .....++...+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46999999999999999999999999999998764322 2222 245566777643322 11 112222222222
Q ss_pred CE-Ee------c---cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 178 PI-LI------G---RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 178 ~~-~~------~---~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
.. .+ + .....++|..|.+.|.+.+.+.|++++ +++|++++.+++ .+.|.+.+|+++.+|+||+|||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-GVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EEEEEEcCCCEEEcCEEEECcCCC
Confidence 11 00 0 112357899999999999988899999 999999988776 577888888899999999999999
Q ss_pred CCCccccccC--CCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc
Q 011835 247 SGKLLEYEVG--GPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA 324 (476)
Q Consensus 247 S~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (476)
|..+..+... .+.......+. ..++..+.......+. ...+.+..+|.+++..++-.....
T Consensus 163 s~~r~~l~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~~~p~~~~~~~~~~~~~~ 225 (375)
T PRK06847 163 SKVRSLVFPDEPEPEYTGQGVWR--AVLPRPAEVDRSLMYL---------------GPTTKAGVVPLSEDLMYLFVTEPR 225 (375)
T ss_pred cchhhHhcCCCCCceeccceEEE--EEecCCCCccceEEEe---------------CCCcEEEEEcCCCCeEEEEEeccC
Confidence 9665444221 11111111221 1222211111111111 112345566777665443222111
Q ss_pred C-CCCCChHHHHHHHHHHHHHcCC-cccce---eE--EEEEEeeCCC---CCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 325 S-KDGLPFDILKKKLMARLERLGI-QVLKT---YE--EEWSYIPVGG---SLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 325 ~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~p~~~---~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
. ......+...+.+.+.+..+.. ....+ +. ......|+.. ..++..+|++|+|||||.++|+.|||+|+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~a 305 (375)
T PRK06847 226 PDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMA 305 (375)
T ss_pred cccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHH
Confidence 1 1112234455666666665543 11111 11 1122334322 235778999999999999999999999999
Q ss_pred HHhHHHHHHHHHH
Q 011835 395 LSEAPNYASAIAY 407 (476)
Q Consensus 395 l~da~~la~~l~~ 407 (476)
|+||..|+++|..
T Consensus 306 ieDA~~La~~L~~ 318 (375)
T PRK06847 306 IEDAIVLAEELAR 318 (375)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
No 33
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=6.8e-28 Score=243.17 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=184.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-C-------ccc---chHHHHhcCcchhhh-hhc---cccee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-N-------YGV---WEDEFRDLGLEGCIE-HVW---RDTVV 171 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~-------~G~---~~~~l~~~~~~~~~~-~~~---~~~~~ 171 (476)
.+||+||||||||+++|+.|++.|++|+|+|+...... . .++ ..+.++.+|+.+.+. ..+ ....+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999998765432 1 112 235677777754432 121 11222
Q ss_pred eeCCCCCEEec-----cC--cceecHHHHHHHHHHHHHHCC-CeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 172 YIDEDEPILIG-----RA--YGRVSRHLLHEELLRRCVESG-VSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 172 ~~~~~~~~~~~-----~~--~~~i~r~~l~~~L~~~~~~~g-v~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
+........+. .+ ...+++..+.+.|.+.+.+.| +++++++|+++..+++ .+.|++.+|.+++||+||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~vI~ad 163 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPD-AATLTLADGQVLRADLVVGAD 163 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCC-eEEEEECCCCEEEeeEEEEeC
Confidence 22221112111 11 235889999999999998887 8888888999987766 577888888889999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecc
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCL 323 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (476)
|.+|..+..+........+. ..++...++....... ..+. + + ...++++++|..++++.+.....
T Consensus 164 G~~S~vr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~----------~--~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07608 164 GAHSWVRSQAGIKAERRPYR-QTGVVANFKAERPHRG-TAYQ-W----------F--RDDGILALLPLPDGHVSMVWSAR 228 (388)
T ss_pred CCCchHHHhcCCCccccccC-CEEEEEEEEecCCCCC-EEEE-E----------e--cCCCCEEEeECCCCCeEEEEECC
Confidence 99996433222211111211 1223333332211111 1111 1 0 12356888999988766543321
Q ss_pred cCC----CCCChHHHHHHHHHHHHHcCCcccceeE-EEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHHHH
Q 011835 324 ASK----DGLPFDILKKKLMARLERLGIQVLKTYE-EEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 324 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
... ...+.+.+.+.+...+... ...+.. .....+|+.. ...+..+|++++|||||.++|++|||+++||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~ 305 (388)
T PRK07608 229 TAHADELLALSPEALAARVERASGGR---LGRLECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLR 305 (388)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHh---cCCceecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHH
Confidence 100 1123345555554444321 111111 0112244432 23456799999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCC--CcccccccCchhhHHHHHHHh
Q 011835 397 EAPNYASAIAYILKHDH--SRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 397 da~~la~~l~~~l~~~~--~~~~L~~~~~~~~~~~~~w~~ 434 (476)
||..||++|........ ....|+ .|++.++.
T Consensus 306 da~~La~~L~~~~~~~~~~~~~~l~-------~Ye~~R~~ 338 (388)
T PRK07608 306 DVAALADVLAGREPFRDLGDLRLLR-------RYERARRE 338 (388)
T ss_pred HHHHHHHHHHHhhccCCCccHHHHH-------HHHHHHHH
Confidence 99999999987643221 123444 78777753
No 34
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=8.8e-28 Score=251.59 Aligned_cols=308 Identities=17% Similarity=0.112 Sum_probs=183.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhh-h--cccceeeeCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEH-V--WRDTVVYIDED 176 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~-~--~~~~~~~~~~~ 176 (476)
..+||+||||||+||++|+.|++.|++|+||||..... ...+++ .+.++.+|+.+.+.. . +....++...+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 45899999999999999999999999999999976432 333443 345667777543322 1 22222222222
Q ss_pred CCE-Eec--------cCc-ceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEec--Cc--eEEECceEE
Q 011835 177 EPI-LIG--------RAY-GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACE--HD--MIVPCRLAT 240 (476)
Q Consensus 177 ~~~-~~~--------~~~-~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~--~g--~~i~a~~vV 240 (476)
... .+. .+. ..+++..+++.|.+.+.+. |++++ +++|++++.+++ .+.|++. +| ++++||+||
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~-~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD-GVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC-eEEEEEEcCCCCEEEEEEEEEE
Confidence 211 111 111 2478889999999998764 99999 999999998887 4666665 45 579999999
Q ss_pred EccCCCCCCccccccCCCcccceeEEEE-EEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEE
Q 011835 241 VASGAASGKLLEYEVGGPKVSVQTAYGV-EVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFE 319 (476)
Q Consensus 241 ~A~G~~S~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (476)
+|||.+|..+..+........+...+.. .+.....+.......+ .+... +.+.++|..++...+.
T Consensus 168 gADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~--~~~~~~p~~~~~~r~~ 233 (538)
T PRK06183 168 GCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ------------YCDPA--RPYTSVRLPHGRRRWE 233 (538)
T ss_pred ecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE------------EECCC--CCEEEEEcCCCeEEEE
Confidence 9999999654443221111122111211 1111111110001111 01111 2345567766654333
Q ss_pred eecccCCCCCChHHHHHHHHHHHHHcCC--cccceeEEEEEEeeCC--CCCCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 320 ETCLASKDGLPFDILKKKLMARLERLGI--QVLKTYEEEWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
........... ....+.+.+.+..+.. ...++.. ...+++. ....+..+||+|+|||||.++|+.|||+|+||
T Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi 310 (538)
T PRK06183 234 FMLLPGETEEQ-LASPENVWRLLAPWGPTPDDAELIR--HAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGI 310 (538)
T ss_pred EEeCCCCChhh-cCCHHHHHHHHHhhCCCCcceEEEE--EEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhH
Confidence 22111111000 0012334444444421 1122222 2223332 22356789999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcCcH
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQ 438 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~~~ 438 (476)
+||..||+.|+..+++..+...|. .|++.++.....
T Consensus 311 ~DA~~La~kLa~~~~g~~~~~~L~-------~Ye~eR~p~~~~ 346 (538)
T PRK06183 311 RDAANLAWKLAAVLRGRAGDALLD-------TYEQERRPHARA 346 (538)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHH-------HHHHHHHHHHHH
Confidence 999999999998776654556666 888877654443
No 35
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=1.5e-27 Score=247.57 Aligned_cols=298 Identities=16% Similarity=0.079 Sum_probs=182.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhhh---cccceeeeCCCC-
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDEDE- 177 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~~~~- 177 (476)
+||+||||||+||++|+.|++.|++|+||||.+... ...+++ .+.++.+|+.+.+... +....+......
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 799999999999999999999999999999876432 222332 4567778875443321 111111111100
Q ss_pred ---CEEeccCcc-eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec--Cc-eEEECceEEEccCCCCCC
Q 011835 178 ---PILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HD-MIVPCRLATVASGAASGK 249 (476)
Q Consensus 178 ---~~~~~~~~~-~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~--~g-~~i~a~~vV~A~G~~S~~ 249 (476)
......++. .+++..+++.|.+.+.+.|++++ ++++++++.+++ .+.+.+. +| +++++|+||+|||.+|..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD-GVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC-eEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 000112222 47899999999999988999999 999999988777 4555554 45 579999999999999954
Q ss_pred cccc--ccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccC--
Q 011835 250 LLEY--EVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLAS-- 325 (476)
Q Consensus 250 ~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-- 325 (476)
+..+ ........+. ++...+......+... +..+ ...++++++|..+++..+.......
T Consensus 162 R~~lgi~~~g~~~~~~---~~~~~~~~~~~~~~~~-~~~~-------------~~~g~~~~~P~~~~~~~~~~~~~~~~~ 224 (493)
T PRK08244 162 RKQAGIAFPGTDATFT---AMLGDVVLKDPPPSSV-LSLC-------------TREGGVMIVPLSGGIYRVLIIDPERPQ 224 (493)
T ss_pred HHhcCCCccCCCcceE---EEEEEEEecCCCCcce-eEEE-------------eCCceEEEEECCCCeEEEEEEcCCccc
Confidence 3322 2222211111 1221221111111111 1000 1125689999988876554321110
Q ss_pred ---CCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCC--CCCCCCCeeEeccccCccCCcchHHHHHHHHhHHH
Q 011835 326 ---KDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPN 400 (476)
Q Consensus 326 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~ 400 (476)
....+.+++.+.+.+.+. ..+..........++.... ..+..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 225 VPKDEPVTLEELKTSLIRICG---TDFGLNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred ccCCCCCCHHHHHHHHHHhhC---CCCCcCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence 112234555555444432 1111111111222333221 24567899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 401 YASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 401 la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
|++.|+..+++..+...|+ .|++.++
T Consensus 302 La~~La~~l~g~~~~~lL~-------~Ye~eR~ 327 (493)
T PRK08244 302 LGWKLAAAIKGWAPDWLLD-------SYHAERH 327 (493)
T ss_pred HHHHHHHHHcCCCCchhhh-------hhHHHHH
Confidence 9999999886554556666 7777664
No 36
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.96 E-value=1e-27 Score=243.01 Aligned_cols=302 Identities=20% Similarity=0.219 Sum_probs=182.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-C-------CCcccc---hHHHHhcCcchhhhh----hccccee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-T-------NNYGVW---EDEFRDLGLEGCIEH----VWRDTVV 171 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-~-------~~~G~~---~~~l~~~~~~~~~~~----~~~~~~~ 171 (476)
.+||+||||||+|+++|+.|++.|++|+|+|+..+. . ...++. .+.|+.+|+.+.+.. .+....+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999986321 1 112332 457778888655532 1222233
Q ss_pred eeCCC-CCEEec-----c-Ccc-eecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEE
Q 011835 172 YIDED-EPILIG-----R-AYG-RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (476)
Q Consensus 172 ~~~~~-~~~~~~-----~-~~~-~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~ 241 (476)
+.... ....+. . .++ .+.+..|.+.|.+.+.+. |++++ +++|++++.+++ .+.|.+.+|++++||+||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES-EAWLTLDNGQALTAKLVVG 162 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-eEEEEECCCCEEEeCEEEE
Confidence 32221 111111 1 223 467888999999988664 79999 999999988776 5778888998999999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc-eEEEEe
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST-RVFFEE 320 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~ 320 (476)
|||.+|..+..+........+. ...+...+.... +.....+. .+... +.+.++|..++ ...+..
T Consensus 163 ADG~~S~vR~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~~~~~-----------~~~~~--g~~~~lp~~~~~~~~~~w 227 (405)
T PRK08850 163 ADGANSWLRRQMDIPLTHWDYG-HSALVANVRTVD-PHNSVARQ-----------IFTPQ--GPLAFLPMSEPNMSSIVW 227 (405)
T ss_pred eCCCCChhHHHcCCCeeEEeec-cEEEEEEEEccC-CCCCEEEE-----------EEcCC--CceEEEECCCCCeEEEEE
Confidence 9999996554443322221221 112222232211 11111111 11122 33666788764 333332
Q ss_pred ecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 321 TCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 321 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
...... ...+.+++.+.+.+.+... .....+.. ....+|+.. ...+..+|++|+|||||.++|+.|||+|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~a 305 (405)
T PRK08850 228 STEPLRAEALLAMSDEQFNKALTAEFDNR-LGLCEVVG-ERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLG 305 (405)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh-hCcEEEcc-cccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHH
Confidence 211110 1223344555555544321 11111111 122344422 235678999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhccCC---CcccccccCchhhHHHHHHH
Q 011835 395 LSEAPNYASAIAYILKHDH---SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 395 l~da~~la~~l~~~l~~~~---~~~~L~~~~~~~~~~~~~w~ 433 (476)
|+||..|+++|......+. ....|+ .|++.++
T Consensus 306 i~Da~~La~~L~~~~~~~~~~~~~~~L~-------~Y~~~R~ 340 (405)
T PRK08850 306 LLDAASLAQEILALWQQGRDIGLKRNLR-------GYERWRK 340 (405)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHH-------HHHHHHh
Confidence 9999999999998774332 134454 6765554
No 37
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=242.35 Aligned_cols=306 Identities=15% Similarity=0.114 Sum_probs=180.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Cccc---chHHHHhcCcchhhhh----hcccceeeeC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGV---WEDEFRDLGLEGCIEH----VWRDTVVYID 174 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~---~~~~l~~~~~~~~~~~----~~~~~~~~~~ 174 (476)
...+||+||||||+|+++|+.|++.|++|+|||+.+.... ...+ ....++.+|+.+.+.. .+....++..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3568999999999999999999999999999998754321 1122 2456777787544432 1122222222
Q ss_pred CCCCE--E-----eccCcc-eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEE--ecCc-eEEECceEEE
Q 011835 175 EDEPI--L-----IGRAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA--CEHD-MIVPCRLATV 241 (476)
Q Consensus 175 ~~~~~--~-----~~~~~~-~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~--~~~g-~~i~a~~vV~ 241 (476)
+.... . ...+++ .+.+..+.+.|.+.+.+ .|++++ +++|+++..+++++..|. ..+| .+++||+||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 21110 1 111232 57888999999998866 489999 999999988777544344 3456 4799999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEee
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEET 321 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (476)
|||.+|..+.......+...+... ...+.++.....+. ..+ ..+. ..++++++|.+ +.+.+..+
T Consensus 164 AdG~~S~vr~~~gi~~~~~~~~~~-~~~~~~~~~~~~~~-~~~-----------~~~~--~~g~~~llP~~-~~~~i~~~ 227 (407)
T PRK06185 164 ADGRHSRVRALAGLEVREFGAPMD-VLWFRLPREPDDPE-SLM-----------GRFG--PGQGLIMIDRG-DYWQCGYV 227 (407)
T ss_pred CCCCchHHHHHcCCCccccCCCce-eEEEecCCCCCCCc-ccc-----------eEec--CCcEEEEEcCC-CeEEEEEE
Confidence 999999543322222111122111 11122221111100 011 1111 23567888987 66666554
Q ss_pred cccCCC----CCChHHHHHHHHHHHHHcCCcccceeE-EEEEEeeC--CCCCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 322 CLASKD----GLPFDILKKKLMARLERLGIQVLKTYE-EEWSYIPV--GGSLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 322 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~p~--~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
...... ..+.+.+.+.+...++.....+..+.. .....+|+ .....+..+|++|+|||||.++|+.|||+|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlg 307 (407)
T PRK06185 228 IPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLA 307 (407)
T ss_pred ecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHH
Confidence 322111 112223333333322111111222111 12233444 23345677999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHH
Q 011835 395 LSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 395 l~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~ 433 (476)
|+||..||+.|.+.++.++ +...|+ .|++.++
T Consensus 308 l~Da~~La~~l~~~~~~~~~~~~~L~-------~Y~~~R~ 340 (407)
T PRK06185 308 IQDAVAAANILAEPLRRGRVSDRDLA-------AVQRRRE 340 (407)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHH-------HHHHHhh
Confidence 9999999999999886653 334555 7776664
No 38
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.96 E-value=1.1e-27 Score=244.78 Aligned_cols=305 Identities=18% Similarity=0.198 Sum_probs=184.6
Q ss_pred ccEEEECCCHHHHHHHHHHHH----cCCcEEEECCCC--CCC-------------CCccc---chHHHHhcCcchhhhhh
Q 011835 108 LDLVVIGCGPAGLALAAESAK----LGLNVGLIGPDL--PFT-------------NNYGV---WEDEFRDLGLEGCIEHV 165 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~----~G~~V~liE~~~--~~~-------------~~~G~---~~~~l~~~~~~~~~~~~ 165 (476)
|||+||||||+|+++|+.|++ +|++|+|||+.. ... +..++ ....++.+|+.+.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999843 211 12233 24567788886555422
Q ss_pred -c---ccceeeeCCCC-CEEec-----cCcc-eecHHHHHHHHHHHHHHCC---CeEE-EEEEEEEEEc------CCceE
Q 011835 166 -W---RDTVVYIDEDE-PILIG-----RAYG-RVSRHLLHEELLRRCVESG---VSYL-SSKVESITES------TSGHR 224 (476)
Q Consensus 166 -~---~~~~~~~~~~~-~~~~~-----~~~~-~i~r~~l~~~L~~~~~~~g---v~i~-~~~v~~i~~~------~~~~~ 224 (476)
+ ....++..... ...+. .+.+ .+++..|.+.|.+.+.+.+ ++++ +++|++++.. ++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 2 12222222111 12221 1222 5789999999999997764 9999 9999999752 12257
Q ss_pred EEEecCceEEECceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCe
Q 011835 225 LVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPT 304 (476)
Q Consensus 225 ~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (476)
.|.+.+|++++||+||+|||.+|..+..+........|.. ..+...+.....+.....+.. +... +
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q-~~~v~~v~~~~~~~~~~~~~~-----------f~~~--g 226 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQ-HAVVATLKLEEATENDVAWQR-----------FLPT--G 226 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeecc-EEEEEEEEcccCCCCCeEEEE-----------ECCC--C
Confidence 8888899999999999999999965544332222212221 122222222111111111111 1222 3
Q ss_pred EEEEEEcCCceEEEEeecccCC----CCCChHHHHHHHHHHHH----H-----------------cCCc-----------
Q 011835 305 FLYVMPMSSTRVFFEETCLASK----DGLPFDILKKKLMARLE----R-----------------LGIQ----------- 348 (476)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~----~-----------------~~~~----------- 348 (476)
.+.++|..+++..+..+..... ...+.+++.+.+...+. . +++.
T Consensus 227 ~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR01989 227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVP 306 (437)
T ss_pred CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccC
Confidence 4777899887655543321110 12344555555544440 0 0000
Q ss_pred --ccceeEEEEEEeeCCCC--CCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCC---Cccccccc
Q 011835 349 --VLKTYEEEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH---SRGRLTHE 421 (476)
Q Consensus 349 --~~~~~~~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~---~~~~L~~~ 421 (476)
+..+.......+|+... ..+..+|++|+|||||.++|+.|||+|+||+||..|+++|.+..+.+. +...|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~-- 384 (437)
T TIGR01989 307 PRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK-- 384 (437)
T ss_pred chhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH--
Confidence 01111112244555332 345679999999999999999999999999999999999999876543 123455
Q ss_pred CchhhHHHHHHH
Q 011835 422 QSNENISMQAWN 433 (476)
Q Consensus 422 ~~~~~~~~~~w~ 433 (476)
.|++.++
T Consensus 385 -----~Y~~~R~ 391 (437)
T TIGR01989 385 -----PYERERY 391 (437)
T ss_pred -----HHHHHHH
Confidence 6766664
No 39
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.96 E-value=6.2e-28 Score=244.14 Aligned_cols=307 Identities=15% Similarity=0.159 Sum_probs=181.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-cc--c---chHHHHhcCcchhhhhh---cccceeeeC-CC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YG--V---WEDEFRDLGLEGCIEHV---WRDTVVYID-ED 176 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~G--~---~~~~l~~~~~~~~~~~~---~~~~~~~~~-~~ 176 (476)
..||+||||||+||++|+.|++.|++|+|+||....... .| + ....++.+|+.+.+... .....++.. .+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999997654321 22 2 24667788875544321 111122111 11
Q ss_pred CCE-----------EeccCcceecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 177 EPI-----------LIGRAYGRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 177 ~~~-----------~~~~~~~~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
... .++.++..++|..|.+.|.+.+.+.+ ++++ +++|++++.+++ .+.+.+.+|+++.+|+||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vV~Ad 162 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GVTVFDQQGNRWTGDALIGCD 162 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ceEEEEcCCCEEecCEEEECC
Confidence 110 12223446899999999999997664 9999 999999987766 567888888889999999999
Q ss_pred CCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceE-EEEeec
Q 011835 244 GAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRV-FFEETC 322 (476)
Q Consensus 244 G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 322 (476)
|.+|..+..+............+...+.... .+... . .... ........+++.+|..++.. .+....
T Consensus 163 G~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~--~~~~~-~---~~~~------~~~~g~~~~~~~~p~~~g~~~~~~~~~ 230 (396)
T PRK08163 163 GVKSVVRQSLVGDAPRVTGHVVYRAVIDVDD--MPEDL-R---INAP------VLWAGPHCHLVHYPLRGGEQYNLVVTF 230 (396)
T ss_pred CcChHHHhhccCCCCCccccEEEEEEEeHHH--Ccchh-c---cCcc------EEEEcCCceEEEEEecCCeEEEEEEEE
Confidence 9999765444322222122223333332211 11100 0 0000 00111234577788876642 222111
Q ss_pred ccCC-CCC-ChHHHHHHHHHHHHHcCCcccceeEE--EEEEeeC---CCCCCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 323 LASK-DGL-PFDILKKKLMARLERLGIQVLKTYEE--EWSYIPV---GGSLPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 323 ~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~p~---~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
.... ... ......+.+.+.+..+.+.+..++.. .+..+++ .....+..+|++|+|||||.++|+.|||+|+||
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 310 (396)
T PRK08163 231 HSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMAL 310 (396)
T ss_pred CCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHH
Confidence 1110 000 00111233445554444333333221 1222222 112345678999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
+||..|+++|... ..+....|. .|++.++..
T Consensus 311 ~Da~~La~~L~~~--~~~~~~al~-------~y~~~R~~r 341 (396)
T PRK08163 311 EDAVTLGKALEGC--DGDAEAAFA-------LYESVRIPR 341 (396)
T ss_pred HHHHHHHHHHHhc--cccHHHHHH-------HHHHHHHHH
Confidence 9999999999752 112233454 677666533
No 40
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=2.7e-27 Score=238.17 Aligned_cols=299 Identities=14% Similarity=0.154 Sum_probs=178.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC--CC--C-----cccc---hHHHHhcCcchhhhhh----cccce
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TN--N-----YGVW---EDEFRDLGLEGCIEHV----WRDTV 170 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~--~~--~-----~G~~---~~~l~~~~~~~~~~~~----~~~~~ 170 (476)
.+||+||||||+|+++|+.|++.|++|+|||+.++. .. . .+++ ...|+.+|+.+.+... .....
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 379999999999999999999999999999986521 11 1 1232 4677888886544321 11112
Q ss_pred eeeCCCCCEEec------cCcc-eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEE
Q 011835 171 VYIDEDEPILIG------RAYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATV 241 (476)
Q Consensus 171 ~~~~~~~~~~~~------~~~~-~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~ 241 (476)
.+........+. ..++ .+.+..|...|.+.+.+ .|++++ +++|++++.+++ .+.|++++|.++++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~-~~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE-GNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC-eEEEEECCCCEEEeeEEEE
Confidence 221111111111 1122 35566788888888755 479999 999999998877 5778899999999999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEee
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEET 321 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (476)
|||.+|..+..+........+.. +...+.+.......+ ..+.. +...++ ...+|..++...+-..
T Consensus 162 ADG~~S~vR~~~gi~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~-----------~~~~g~--~~~~pl~~~~~~~~~~ 226 (384)
T PRK08849 162 ADGANSQVRQLAGIGITAWDYRQ-HCMLINVETEQPQQD-ITWQQ-----------FTPSGP--RSFLPLCGNQGSLVWY 226 (384)
T ss_pred ecCCCchhHHhcCCCceeccCCC-eEEEEEEEcCCCCCC-EEEEE-----------eCCCCC--EEEeEcCCCceEEEEE
Confidence 99999975544332211112211 122222222111111 11111 112222 2335665443211111
Q ss_pred cccC----CCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCC--CCCCCCCCeeEeccccCccCCcchHHHHHHH
Q 011835 322 CLAS----KDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGG--SLPNTEQRNLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 322 ~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al 395 (476)
.... ....+.+.+.+.+...++.. +..+....+..+|+.. ...+..+|++|+|||||.++|+.|||+|+||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al 303 (384)
T PRK08849 227 DSPKRIKQLSAMNPEQLRSEILRHFPAE---LGEIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGF 303 (384)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHhhhh---hCcEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHH
Confidence 1000 01234455556665555432 2222223445566542 3356789999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
+||..|+++|... ...+.+.|. .|++.++
T Consensus 304 ~Da~~L~~~l~~~--~~~~~~~L~-------~Ye~~R~ 332 (384)
T PRK08849 304 KDVDVLLAETEKQ--GVLNDASFA-------RYERRRR 332 (384)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHH-------HHHHHHh
Confidence 9999999988642 112344555 7776664
No 41
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=5.2e-27 Score=248.07 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=188.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhhhc---ccceeeeCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHVW---RDTVVYIDE 175 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~~~---~~~~~~~~~ 175 (476)
..+||+||||||+||++|+.|++. |++|+|||+.+... +..|+. .+.|+.+|+.+.+.... ....++...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 468999999999999999999995 99999999875432 333443 45677888855443211 112222211
Q ss_pred CC---CE------------EeccCcceecHHHHHHHHHHHHHHCC--CeEE-EEEEEEEEEcCCc--eEEEEec------
Q 011835 176 DE---PI------------LIGRAYGRVSRHLLHEELLRRCVESG--VSYL-SSKVESITESTSG--HRLVACE------ 229 (476)
Q Consensus 176 ~~---~~------------~~~~~~~~i~r~~l~~~L~~~~~~~g--v~i~-~~~v~~i~~~~~~--~~~v~~~------ 229 (476)
.. .+ ....++..++|..+++.|.+.+.+.| +++. ++++++++.++++ .+.|++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 10 00 00122336889999999999998776 4677 9999999876432 3666664
Q ss_pred Cc--eEEECceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEE
Q 011835 230 HD--MIVPCRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLY 307 (476)
Q Consensus 230 ~g--~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (476)
+| ++++||+||+|||++|..+..+........+...+++........++........ .....+.+.
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~------------~~~~~g~~~ 258 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAI------------QSASEGSIL 258 (634)
T ss_pred CCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEE------------ecCCCceEE
Confidence 34 5899999999999999765544322222233334444322221222211111100 111224567
Q ss_pred EEEcCCce-EEE--Eeeccc-----CCCCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCC------------
Q 011835 308 VMPMSSTR-VFF--EETCLA-----SKDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLP------------ 367 (476)
Q Consensus 308 ~~p~~~~~-~~~--~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------ 367 (476)
++|..++. +.+ ...... +......+++.+.+.+.+..+...+..+ ..+..+++.....
T Consensus 259 ~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v--~w~s~y~i~~r~a~~f~~~~~~~~~ 336 (634)
T PRK08294 259 LIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEV--AWWSVYEVGQRLTDRFDDVPAEEAG 336 (634)
T ss_pred EEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEE--eEEecccccceehhhcccccccccc
Confidence 78887764 222 211100 1123345556565555443222222111 1334444432210
Q ss_pred CCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhcC
Q 011835 368 NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLW 436 (476)
Q Consensus 368 ~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~~ 436 (476)
+..+||+|+|||||.++|..|||||++|+||..|++.|+..+++......|. .|+..++...
T Consensus 337 ~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~-------tYe~ERrp~a 398 (634)
T PRK08294 337 TRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLH-------TYSAERQAIA 398 (634)
T ss_pred cccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHH-------HHHHHHHHHH
Confidence 1358999999999999999999999999999999999999987655566666 8887776443
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=3.6e-27 Score=242.77 Aligned_cols=299 Identities=17% Similarity=0.121 Sum_probs=183.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC----CCcccch---HHHHhcCcchhhhhh---cccce---eee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT----NNYGVWE---DEFRDLGLEGCIEHV---WRDTV---VYI 173 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~----~~~G~~~---~~l~~~~~~~~~~~~---~~~~~---~~~ 173 (476)
.+||+||||||+|+++|+.|++.|++|+|||+..... +..+++. +.++.+|+.+.+... +.... ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999876422 2334443 456677775443321 11000 011
Q ss_pred CCCCCEEeccCcc-eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 174 DEDEPILIGRAYG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 174 ~~~~~~~~~~~~~-~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
+... .....+++ .+.+..+++.|.+.+++.|++++ +++|++++.+++ .+.|.+.+|.++++|+||+|||.+|..+.
T Consensus 83 ~~~~-~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-~v~v~~~~g~~i~a~~vVgADG~~S~vR~ 160 (488)
T PRK06834 83 DISD-FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT-GVDVELSDGRTLRAQYLVGCDGGRSLVRK 160 (488)
T ss_pred cccc-CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEEEEecCCCCCcHh
Confidence 1000 00111232 46788999999999998999999 999999998877 56777778888999999999999996443
Q ss_pred ccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcC-CceEEEEeecc--cCCCC
Q 011835 252 EYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMS-STRVFFEETCL--ASKDG 328 (476)
Q Consensus 252 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~--~~~~~ 328 (476)
.+...-+...+.. ..+...+..... +... + .....+.+.+.|.. +++..+..... .....
T Consensus 161 ~lgi~~~g~~~~~-~~~~~dv~~~~~-~~~~-~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (488)
T PRK06834 161 AAGIDFPGWDPTT-SYLIAEVEMTEE-PEWG-V--------------HRDALGIHAFGRLEDEGPVRVMVTEKQVGATGE 223 (488)
T ss_pred hcCCCCCCCCcce-EEEEEEEEecCC-CCcc-e--------------eeCCCceEEEeccCCCCeEEEEEecCCCCCCCC
Confidence 3322111112211 122222221110 1000 0 00112334455554 44433322211 11123
Q ss_pred CChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCC--CCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHH
Q 011835 329 LPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 406 (476)
Q Consensus 329 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~ 406 (476)
.+.+++.+.+...+. ..+..........++.. ....+..+||+|+|||||.++|+.|||+|++|+||..|++.|+
T Consensus 224 ~~~~~~~~~l~~~~g---~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa 300 (488)
T PRK06834 224 PTLDDLREALIAVYG---TDYGIHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLA 300 (488)
T ss_pred CCHHHHHHHHHHhhC---CCCccccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHH
Confidence 345566666665542 22111111122233322 2235567999999999999999999999999999999999999
Q ss_pred HHhccCCCcccccccCchhhHHHHHHHh
Q 011835 407 YILKHDHSRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 407 ~~l~~~~~~~~L~~~~~~~~~~~~~w~~ 434 (476)
..+++..+...|. .|++.++.
T Consensus 301 ~vl~g~~~~~lLd-------~Ye~eRrp 321 (488)
T PRK06834 301 QVVKGTSPESLLD-------TYHAERHP 321 (488)
T ss_pred HHHcCCCcHHHHH-------HHHHHHHH
Confidence 9987655556666 77777653
No 43
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=4.4e-27 Score=233.46 Aligned_cols=293 Identities=17% Similarity=0.115 Sum_probs=174.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-----CCCccc--c---hHHHHhcCcchh---hhh--hcccceee
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-----TNNYGV--W---EDEFRDLGLEGC---IEH--VWRDTVVY 172 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-----~~~~G~--~---~~~l~~~~~~~~---~~~--~~~~~~~~ 172 (476)
+||+||||||||+++|+.|++. ++|+|+|+.... ...+|. + ...++.+|+... +.. ......+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 999999987632 223443 2 345566666311 110 00000111
Q ss_pred eCCCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe-cCce--EEECceEEEccCCCCC
Q 011835 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-EHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 173 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~-~~g~--~i~a~~vV~A~G~~S~ 248 (476)
........++.++..++|..|++.|.+. .+.|++++ ++.+++++.+++ .+.|.+ .+|. +++||+||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDD-GYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCC-EEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 1110011123344469999999999885 46789999 999999988777 455654 4563 6899999999999996
Q ss_pred CccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCC
Q 011835 249 KLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDG 328 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 328 (476)
....+........ ..++...+......+....+++ .....+|.|++|.++. +.++.. . +.
T Consensus 159 vr~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~------------~~~~~~~~W~~p~~~~-~~~g~~-~---~~ 218 (351)
T PRK11445 159 VRRHLYPDHQIRK---YVAIQQWFAEKHPVPFYSCIFD------------NEITDCYSWSISKDGY-FIFGGA-Y---PM 218 (351)
T ss_pred HhHHhcCCCchhh---EEEEEEEecCCCCCCCcceEEe------------ccCCCceEEEeCCCCc-EEeccc-c---cc
Confidence 5544332211111 1222222221111111111111 1122478999999764 334322 1 11
Q ss_pred CChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCC---CCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHH
Q 011835 329 LPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSL---PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAI 405 (476)
Q Consensus 329 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l 405 (476)
.......+.+.+.+...+....+.+......++..... ....+|+++||||||.++|++|+|++.|+.||..||++|
T Consensus 219 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l 298 (351)
T PRK11445 219 KDGRERFETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVL 298 (351)
T ss_pred cchHHHHHHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHH
Confidence 11122223444445444444344433333332222111 123589999999999999999999999999999999999
Q ss_pred HHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 406 AYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 406 ~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
.+.. ...|+ .|++.|+.+
T Consensus 299 ~~~~-----~~~~~-------~y~~~~~~~ 316 (351)
T PRK11445 299 NKQP-----EKLNT-------AYWRKTRKL 316 (351)
T ss_pred Hhcc-----cchHH-------HHHHHHHHH
Confidence 8654 23444 898888643
No 44
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=4.2e-28 Score=246.45 Aligned_cols=347 Identities=14% Similarity=0.115 Sum_probs=204.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-C-Ccc--cchHHHHhcCc----chhhhhhc-ccceeeeCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-N-NYG--VWEDEFRDLGL----EGCIEHVW-RDTVVYIDE 175 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~-~~G--~~~~~l~~~~~----~~~~~~~~-~~~~~~~~~ 175 (476)
+..+||+||||||||++||+.|+++|++|+||||..... . .+| ++...++.+.. ...+.... .....+...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 456999999999999999999999999999999865432 1 222 22222332210 00000000 000001111
Q ss_pred CCCEEe----------ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccC
Q 011835 176 DEPILI----------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (476)
Q Consensus 176 ~~~~~~----------~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G 244 (476)
.....+ ......+.|..|++.|.+.+++.|++++ +++|+++..+++.++.+. .++.++.||+||+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeC
Confidence 111100 1112257899999999999999999999 999999987766333443 4667899999999999
Q ss_pred CCCCCccccccCCCcccceeEEEEEEEeeCCC--C-------CCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce
Q 011835 245 AASGKLLEYEVGGPKVSVQTAYGVEVEVENNP--Y-------DPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR 315 (476)
Q Consensus 245 ~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (476)
.+|.....+.........+.+.++...++.+. . +.....+..... ......++.|+++. ++.
T Consensus 162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~g~~ggG~~~~~-~~~ 232 (428)
T PRK10157 162 VNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGS--------PTDGLMGGGFLYTN-ENT 232 (428)
T ss_pred CCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEEC--------CCCCCcCceeEEEc-CCe
Confidence 98853332221111112233444433332211 0 011111110000 01111123455554 446
Q ss_pred EEEEeecccCC---CCCChHHHHHHHHHHHHHcCCccc------ceeEEEEEEeeCCCCC---CCCCCCeeEeccccCcc
Q 011835 316 VFFEETCLASK---DGLPFDILKKKLMARLERLGIQVL------KTYEEEWSYIPVGGSL---PNTEQRNLAFGAAASMV 383 (476)
Q Consensus 316 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~p~~~~~---~~~~~rv~liGDAAh~~ 383 (476)
+.+|..+.... ......++.+. +... +.+. ...+.....+|..+.. ....++++++||||+++
T Consensus 233 ~svG~~~~~~~~~~~~~~~~~~l~~----~~~~-p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v 307 (428)
T PRK10157 233 LSLGLVCGLHHLHDAKKSVPQMLED----FKQH-PAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMC 307 (428)
T ss_pred EEEEEEEehHHhcccCCCHHHHHHH----HHhC-chHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccc
Confidence 77776432211 11222233232 2221 1111 2222233345655432 34579999999999999
Q ss_pred CC--cchHHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHHhcCcHHHHHHHHHHHh-hHHHHhcCCh
Q 011835 384 HP--ATGYSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLF-GLALILQLDI 459 (476)
Q Consensus 384 ~P--~~G~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~-~~~~~~~l~~ 459 (476)
+| ++|.|++.||.+|.++|+++.++++.++ +...|+ .|++.|+..+-++++..+++..+ ....+....+
T Consensus 308 ~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~-------~Y~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 380 (428)
T PRK10157 308 MNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLA-------EYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYP 380 (428)
T ss_pred cccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHH-------HHHHHHHHhHHHHHHHHhccHHHhcCccHHHHHH
Confidence 98 5999999999999999999999998766 667777 89999988876777766555444 2234455668
Q ss_pred HHHHHHHHHhhcCC
Q 011835 460 EGIRTFFRTFFRLP 473 (476)
Q Consensus 460 ~~~~~~~~~f~~l~ 473 (476)
+.+...+..||.++
T Consensus 381 ~~~~~~~~~~~~~~ 394 (428)
T PRK10157 381 ELAVGVARDLFTID 394 (428)
T ss_pred HHHHHHHHHheeeC
Confidence 88899999999874
No 45
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.96 E-value=1.5e-27 Score=241.39 Aligned_cols=307 Identities=16% Similarity=0.182 Sum_probs=177.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Cccc---chHHHHhcCcchhhhhh-cccceeeeCCCCC--
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGV---WEDEFRDLGLEGCIEHV-WRDTVVYIDEDEP-- 178 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~---~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-- 178 (476)
-+|+||||||+||++|+.|+++|++|+|+|+...... ...+ ....|+.+|+.+.+... .....+.+.++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 3799999999999999999999999999998764321 2222 24566777775444321 1111111111110
Q ss_pred -E-----------EeccCcceecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEe---cCceEEECceEEE
Q 011835 179 -I-----------LIGRAYGRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVAC---EHDMIVPCRLATV 241 (476)
Q Consensus 179 -~-----------~~~~~~~~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~---~~g~~i~a~~vV~ 241 (476)
. .++.++..++|..|.+.|.+.+.+ .|++++ +++|++++.+++ .+.+++ .+++++++|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~-~v~v~~~~~~~~~~~~adlvIg 161 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN-SITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC-ceEEEEEeCCCCcEEecCEEEE
Confidence 0 112244468999999999999866 489999 999999988766 455555 3346799999999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCce-eeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLM-VFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
|||.+|..+..+............++..+..+.. +.... .+.+... ....+ ...+.+..+|..++..+.-.
T Consensus 162 ADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~--g~~~~~~~~p~~~~~~~~~~ 233 (400)
T PRK06475 162 CDGVWSMLRAKAGFSKARFSGHIAWRTTLAADAL--PASFLSAMPEHKA----VSAWL--GNKAHFIAYPVKGGKFFNFV 233 (400)
T ss_pred CCCccHhHHhhcCCCCCCcCCceEEEEEeehhhc--chhhhhhcccCCc----eEEEE--cCCCEEEEEEccCCcEEEEE
Confidence 9999997655543322221222333333322211 11000 0000000 00001 12245667788766432211
Q ss_pred e-ccc--CCCCCChHHHHHHHHHHHHHcCCcccceeEE--EEEEeeCCCCC--CC-CCCCeeEeccccCccCCcchHHHH
Q 011835 321 T-CLA--SKDGLPFDILKKKLMARLERLGIQVLKTYEE--EWSYIPVGGSL--PN-TEQRNLAFGAAASMVHPATGYSVV 392 (476)
Q Consensus 321 ~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~p~~~~~--~~-~~~rv~liGDAAh~~~P~~G~G~~ 392 (476)
. ... ...........+.+.+.+..+.+.+..+++. .+..+|+.... ++ ..+|++|+|||||.++|+.|||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n 313 (400)
T PRK06475 234 AITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAA 313 (400)
T ss_pred EEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHH
Confidence 1 000 0000111111234455555555444433332 23345553322 22 458999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHh
Q 011835 393 RSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 393 ~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~ 434 (476)
+||+||..|+++|.. .+-...|+ .|++.++.
T Consensus 314 ~aieDa~~La~~L~~----~~~~~aL~-------~Ye~~R~~ 344 (400)
T PRK06475 314 MAIEDAAALAEALDS----DDQSAGLK-------RFDSVRKE 344 (400)
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHH-------HHHHHHHH
Confidence 999999999999952 12123444 77766653
No 46
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=1.9e-27 Score=237.67 Aligned_cols=302 Identities=15% Similarity=0.061 Sum_probs=178.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-Ccc-----cchHHHHhcCcchhhhhh---cccceeeeCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYG-----VWEDEFRDLGLEGCIEHV---WRDTVVYIDEDEP 178 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~G-----~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 178 (476)
.||+||||||+|+++|+.|++.|++|+|||+.+.... ..+ ...+.++.+|+.+.+... .....++..++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 3899999999999999999999999999998765432 111 135677788885544322 2222222222221
Q ss_pred EEe-----------ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 179 ILI-----------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 179 ~~~-----------~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
... +.+...+.|..|.+.|.+.+ ..|++++ +++|++++.+++ .+.|++.+|.++++|+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-eEEEEECCCCeEEeCEEEECCCCC
Confidence 110 11112467888988776543 5689999 999999987766 678889999899999999999999
Q ss_pred CCCccccccCCCc-ccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc-eEEEEeeccc
Q 011835 247 SGKLLEYEVGGPK-VSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST-RVFFEETCLA 324 (476)
Q Consensus 247 S~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~ 324 (476)
|..+..+...... ......+...+.++.. .+.+....+. .....++.++|..++ ..+.......
T Consensus 160 S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
T PRK05868 160 SNVRRLVFGPEEQFVKRLGTHAAIFTVPNF-LELDYWQTWH-------------YGDSTMAGVYSARNNTEARAALAFMD 225 (372)
T ss_pred chHHHHhcCCcccceeecceEEEEEEcCCC-CCCCcceEEE-------------ecCCcEEEEEecCCCCceEEEEEEec
Confidence 9766555332211 1111122222222211 1111111100 011123445565543 2121111101
Q ss_pred CC---CCCChHHHHHHHHHHHHHcCCccccee---EE-EEEEee-CC--CCCCCCCCCeeEeccccCccCCcchHHHHHH
Q 011835 325 SK---DGLPFDILKKKLMARLERLGIQVLKTY---EE-EWSYIP-VG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRS 394 (476)
Q Consensus 325 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~-~~~~~p-~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~~A 394 (476)
.. .....+...+.+.+.+...++....+. .. ....++ +. ....|+.+||+|+|||||+++|+.|||+++|
T Consensus 226 ~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~A 305 (372)
T PRK05868 226 TELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVA 305 (372)
T ss_pred CCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHH
Confidence 00 111233456667777765444322222 11 111122 11 1235678999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHh
Q 011835 395 LSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 395 l~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~ 434 (476)
|+||..||+.|... ..+..+.|+ .|++.++.
T Consensus 306 leDa~~La~~L~~~--~~~~~~al~-------~ye~~~~~ 336 (372)
T PRK05868 306 LLGAYILAGELKAA--GDDYQLGFA-------NYHAEFHG 336 (372)
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHH-------HHHHHHhH
Confidence 99999999999653 112234455 77776653
No 47
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=4.3e-27 Score=236.76 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=167.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--CC--cc-c---chHHHHhcCcchhhhhhc---ccceeeeCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NN--YG-V---WEDEFRDLGLEGCIEHVW---RDTVVYIDED 176 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~~--~G-~---~~~~l~~~~~~~~~~~~~---~~~~~~~~~~ 176 (476)
+||+||||||+|+++|+.|++.|++|+|||+..... .. .+ + ..+.|+.+|+.+.+.... ....+.. .+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~-~~ 81 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAF-DG 81 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEee-CC
Confidence 699999999999999999999999999999977421 11 11 2 246778888865544311 1122221 11
Q ss_pred CCEEe--c-----cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEE-cCCceEEEEec-Cce--EEECceEEEccC
Q 011835 177 EPILI--G-----RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITE-STSGHRLVACE-HDM--IVPCRLATVASG 244 (476)
Q Consensus 177 ~~~~~--~-----~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~-~~~~~~~v~~~-~g~--~i~a~~vV~A~G 244 (476)
..... . .+.....+..+.+.|.+.+.+.|++++ +++++.+.. +++ .+.|++. +|+ ++++|+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-RPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-ccEEEEEECCeEEEEEeCEEEECCC
Confidence 11111 1 111123567888999998888898888 888877755 333 4566664 664 789999999999
Q ss_pred CCCCCccccccCCCcccceeE--EEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCC-c--eEEEE
Q 011835 245 AASGKLLEYEVGGPKVSVQTA--YGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSS-T--RVFFE 319 (476)
Q Consensus 245 ~~S~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~--~~~~~ 319 (476)
.+|..+..+...... .+... +++...+...+.......+... ..++. ++|..+ + .+++.
T Consensus 161 ~~S~VR~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~ 224 (390)
T TIGR02360 161 FHGVSRASIPAEVLK-EFERVYPFGWLGILSETPPVSHELIYSNH--------------ERGFA-LCSMRSATRSRYYVQ 224 (390)
T ss_pred CchhhHHhcCcccce-eeeccCCcceEEEecCCCCCCCceEEEeC--------------CCceE-EEeccCCCcceEEEE
Confidence 999766554332211 11111 1222111111111111111110 11222 223321 1 12221
Q ss_pred eecccCCCCCChHHHHHHHHHHHHHcCCcccceeE----EEEEEeeC--CCCCCCCCCCeeEeccccCccCCcchHHHHH
Q 011835 320 ETCLASKDGLPFDILKKKLMARLERLGIQVLKTYE----EEWSYIPV--GGSLPNTEQRNLAFGAAASMVHPATGYSVVR 393 (476)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~p~--~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~ 393 (476)
..........+.+.+.+.+.+.+. ..+.+.+. ......|+ ....++..+|++|+|||||.++|+.|||+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ 301 (390)
T TIGR02360 225 VPLTDKVEDWSDDRFWAELKRRLP---SEAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNL 301 (390)
T ss_pred cCCCCChhhCChhHHHHHHHHhcC---chhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhH
Confidence 110000111222334444443331 11111111 11233344 2334567899999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHh
Q 011835 394 SLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNT 434 (476)
Q Consensus 394 Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~ 434 (476)
||+||..||++|......+ ....|. .|++.++.
T Consensus 302 aieDA~~La~~L~~~~~~~-~~~al~-------~Y~~~R~~ 334 (390)
T TIGR02360 302 AASDVHYLYEALLEHYQEG-SSAGIE-------GYSARALA 334 (390)
T ss_pred HHHHHHHHHHHHHHHhccC-hHHHHH-------HHHHHHHH
Confidence 9999999999998764322 234455 67776653
No 48
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=3.6e-27 Score=238.28 Aligned_cols=301 Identities=19% Similarity=0.191 Sum_probs=176.0
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcC----CcEEEECCCCCCC---C--Cccc---chHHHHhcCcchhhhhhccccee
Q 011835 104 GNGILDLVVIGCGPAGLALAAESAKLG----LNVGLIGPDLPFT---N--NYGV---WEDEFRDLGLEGCIEHVWRDTVV 171 (476)
Q Consensus 104 ~~~~~dVvIIGgG~aGl~~A~~La~~G----~~V~liE~~~~~~---~--~~G~---~~~~l~~~~~~~~~~~~~~~~~~ 171 (476)
.+..+||+||||||+|+++|+.|++.| ++|+|+|+..... . ...+ ....++.+|+.+..........+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 356689999999999999999999987 4799999865321 1 1122 24567777774432221112222
Q ss_pred eeCCC-CCEE-----eccC-cc-eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc---eEEECceE
Q 011835 172 YIDED-EPIL-----IGRA-YG-RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCRLA 239 (476)
Q Consensus 172 ~~~~~-~~~~-----~~~~-~~-~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g---~~i~a~~v 239 (476)
+.... .... +..+ .+ .++|..|.+.|.+.+.+.|++++ ++++++++.+++ .+.+.+.++ ++++||+|
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~-~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDAD-GVTLALGTPQGARTLRARIA 166 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCC-eEEEEECCCCcceEEeeeEE
Confidence 11110 0111 1112 23 58999999999999999999999 999999988777 567777754 68999999
Q ss_pred EEccCCC-CCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce---
Q 011835 240 TVASGAA-SGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR--- 315 (476)
Q Consensus 240 V~A~G~~-S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--- 315 (476)
|+|||.. |..+..+........+.. ..+...++... ++....+..+ ... +++.++|..++.
T Consensus 167 IgADG~~~s~~r~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~-----------~~~--G~~~~lp~~~~~~~~ 231 (398)
T PRK06996 167 VQAEGGLFHDQKADAGDSARRRDYGQ-TAIVGTVTVSA-PRPGWAWERF-----------THE--GPLALLPLGGPRQAD 231 (398)
T ss_pred EECCCCCchHHHHHcCCCceeeecCC-eEEEEEEEccC-CCCCEEEEEe-----------cCC--CCeEEeECCCCCCCc
Confidence 9999974 433332222211112211 12222232111 1111111111 112 335666776543
Q ss_pred EEEEeecccC----CCCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCC--CCCCCCCCCeeEeccccCccCCcch
Q 011835 316 VFFEETCLAS----KDGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATG 388 (476)
Q Consensus 316 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G 388 (476)
..+-...... ....+.+.+.+.+.+.+.. .+..+... ....+|+. ....+..+||+|+|||||.++|+.|
T Consensus 232 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~G 308 (398)
T PRK06996 232 YALVWCCAPDEAARRAALPDDAFLAELGAAFGT---RMGRFTRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAG 308 (398)
T ss_pred EEEEEECCHHHHHHHHcCCHHHHHHHHHHHhcc---ccCceEEecceEEEeeecccccceecCCEEEEEhhhccCCcccc
Confidence 2222111110 0122344555555555443 22222221 12234443 2335678999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHH
Q 011835 389 YSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWN 433 (476)
Q Consensus 389 ~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~ 433 (476)
||+|+||+||..||++|... +.....|. .|++.++
T Consensus 309 QG~n~ai~Da~~La~~L~~~---~~~~~~L~-------~Y~~~R~ 343 (398)
T PRK06996 309 QGLNLGLRDAHTLADALSDH---GATPLALA-------TFAARRA 343 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhc---CCcHHHHH-------HHHHHHH
Confidence 99999999999999999652 22234455 6666654
No 49
>PTZ00367 squalene epoxidase; Provisional
Probab=99.96 E-value=8.7e-27 Score=241.61 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=167.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC-C-CCCCccc-----chHHHHhcCcchhhhhh---cccceeeeCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-P-FTNNYGV-----WEDEFRDLGLEGCIEHV---WRDTVVYIDE 175 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~-~-~~~~~G~-----~~~~l~~~~~~~~~~~~---~~~~~~~~~~ 175 (476)
..+||+||||||+|+++|+.|+++|++|+|+|+.. . .....|. ....++++|+.+.+... .....++..+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 46899999999999999999999999999999975 2 2222332 34677888887655432 2223333333
Q ss_pred CCCEEecc----CcceecHHHHHHHHHHHH---HHCCCeEEEEEEEEEEEcCCc----eEEE--EecC------------
Q 011835 176 DEPILIGR----AYGRVSRHLLHEELLRRC---VESGVSYLSSKVESITESTSG----HRLV--ACEH------------ 230 (476)
Q Consensus 176 ~~~~~~~~----~~~~i~r~~l~~~L~~~~---~~~gv~i~~~~v~~i~~~~~~----~~~v--~~~~------------ 230 (476)
+....... ....+++..+.+.|++.+ ...||+++.++|+++..+++. ..+| ...+
T Consensus 112 G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~ 191 (567)
T PTZ00367 112 GKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFRED 191 (567)
T ss_pred CCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCcccccccccccc
Confidence 32222111 111357888888888877 346899996688888655432 2333 3333
Q ss_pred -----------ceEEECceEEEccCCCCCCccccccCCCcc-cceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCcccc
Q 011835 231 -----------DMIVPCRLATVASGAASGKLLEYEVGGPKV-SVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSF 298 (476)
Q Consensus 231 -----------g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (476)
+++++||+||+|||.+|..+..+....+.. ..+...|..+.-...+.+.....++
T Consensus 192 ~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~------------- 258 (567)
T PTZ00367 192 PPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFL------------- 258 (567)
T ss_pred cccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEE-------------
Confidence 568999999999999996554443222211 2233344433211111111111111
Q ss_pred CCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHHHHHH-HcCCc----ccceeEE--EEEEeeCCC--CCCCC
Q 011835 299 ESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLMARLE-RLGIQ----VLKTYEE--EWSYIPVGG--SLPNT 369 (476)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~----~~~~~~~--~~~~~p~~~--~~~~~ 369 (476)
. ..+.++++|.++++..+......... .+.++..+.+.+.+. .+... +...... ....+|... ..++.
T Consensus 259 g--~~gpi~~yPl~~~~~r~lv~~~~~~~-p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~ 335 (567)
T PTZ00367 259 G--KTGPILSYRLDDNELRVLVDYNKPTL-PSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPS 335 (567)
T ss_pred c--CCceEEEEEcCCCeEEEEEEecCCcC-CChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCC
Confidence 1 23558999999887655443211111 111122222222110 00000 0000000 111223322 22456
Q ss_pred CCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHh
Q 011835 370 EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 409 (476)
Q Consensus 370 ~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l 409 (476)
.+|++|+|||||+++|++|||+|+||+||..|++.|....
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999999999999999999999998643
No 50
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=3e-27 Score=239.08 Aligned_cols=310 Identities=17% Similarity=0.150 Sum_probs=184.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCcEEEECCCCCCC--------CCcccc---hHHHHhcCcchhhhhhc---ccc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFT--------NNYGVW---EDEFRDLGLEGCIEHVW---RDT 169 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~---G~~V~liE~~~~~~--------~~~G~~---~~~l~~~~~~~~~~~~~---~~~ 169 (476)
.+||+||||||||+++|+.|+++ |++|+|||+..+.. ...+++ ...++.+|+.+.+.... ...
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 99999999953321 112232 35677788755443321 111
Q ss_pred eeeeCCCC-CEE-----eccCc--ceecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceE
Q 011835 170 VVYIDEDE-PIL-----IGRAY--GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLA 239 (476)
Q Consensus 170 ~~~~~~~~-~~~-----~~~~~--~~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v 239 (476)
.+...... ... .+.+. ..++|..|.+.|.+.+.+ .|++++ +++|+++..+++ .+.|++.+|.++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-SVRVTLDDGETLTGRLL 161 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-eEEEEECCCCEEEeCEE
Confidence 11111110 011 11111 247888999999998865 589999 999999987766 56788888888999999
Q ss_pred EEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEE
Q 011835 240 TVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFE 319 (476)
Q Consensus 240 V~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (476)
|+|||.+|..+..+........+.. ..+...+...... ....+..+ .. .++++++|.++++..+.
T Consensus 162 I~AdG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-----------~~--~g~~~~~p~~~g~~~~~ 226 (395)
T PRK05732 162 VAADGSHSALREALGIDWQQHPYEQ-VAVIANVTTSEAH-QGRAFERF-----------TE--HGPLALLPMSDGRCSLV 226 (395)
T ss_pred EEecCCChhhHHhhCCCccceecCC-EEEEEEEEecCCC-CCEEEEee-----------cC--CCCEEEeECCCCCeEEE
Confidence 9999999964443322211111111 1111222211111 11111111 11 23477889988876544
Q ss_pred eecccCC----CCCChHHHHHHHHHHHHHcCCcccceeEE-EEEEeeCC--CCCCCCCCCeeEeccccCccCCcchHHHH
Q 011835 320 ETCLASK----DGLPFDILKKKLMARLERLGIQVLKTYEE-EWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVV 392 (476)
Q Consensus 320 ~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~ 392 (476)
....... .....+.+.+.+.+.+. +....+... ....+|+. ...++..+|++|+|||||.++|++|||+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~ 303 (395)
T PRK05732 227 WCHPLEDAEEVLSWSDAQFLAELQQAFG---WRLGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFN 303 (395)
T ss_pred EECCHHHHHHHHcCCHHHHHHHHHHHHH---hhhcceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccc
Confidence 3211100 11223344444444432 222222211 12223332 22356679999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhccCCC---cccccccCchhhHHHHHHHhcCcHHHHH
Q 011835 393 RSLSEAPNYASAIAYILKHDHS---RGRLTHEQSNENISMQAWNTLWPQERKR 442 (476)
Q Consensus 393 ~Al~da~~la~~l~~~l~~~~~---~~~L~~~~~~~~~~~~~w~~~~~~e~~~ 442 (476)
+||+||..||++|...++...+ ...|+ .|++.++.........
T Consensus 304 ~al~Da~~La~~L~~~~~~~~~~~~~~~l~-------~Y~~~R~~~~~~~~~~ 349 (395)
T PRK05732 304 LGLRDVMSLAETLTQALARGEDIGDYAVLQ-------RYQQRRQQDREATIGF 349 (395)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-------HHHHHHHHHHHHHHHH
Confidence 9999999999999987654321 23455 7888776544433333
No 51
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.96 E-value=1.3e-26 Score=243.32 Aligned_cols=306 Identities=16% Similarity=0.132 Sum_probs=181.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Ccccc---hHHHHhcCcchhhhhh---cccceeeeCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGVW---EDEFRDLGLEGCIEHV---WRDTVVYIDED 176 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~~---~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 176 (476)
..+||+||||||+||++|+.|++.|++|+||||...... ..+++ .+.++.+|+.+.+... +.....+..+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 568999999999999999999999999999999864322 23333 4566677875443321 22222222221
Q ss_pred CCEEec--------c-CcceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEe--cCc-eEEECceEEEc
Q 011835 177 EPILIG--------R-AYGRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVAC--EHD-MIVPCRLATVA 242 (476)
Q Consensus 177 ~~~~~~--------~-~~~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~--~~g-~~i~a~~vV~A 242 (476)
....+. . .+..+.+..+++.|.+.+.+. |++++ +++|++++.+++ .+.+.+ .++ .++++|+||+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-~v~v~~~~~~g~~~i~ad~vVgA 180 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD-GVTLTVETPDGPYTLEADWVIAC 180 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC-EEEEEEECCCCcEEEEeCEEEEC
Confidence 111111 1 122478889999999999765 79999 999999998877 444444 344 37999999999
Q ss_pred cCCCCCCccccccCCCcccceeEEE-EEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEee
Q 011835 243 SGAASGKLLEYEVGGPKVSVQTAYG-VEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEET 321 (476)
Q Consensus 243 ~G~~S~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (476)
||.+|..+..+........+...+- ..+..+ .+++.....++.. ......++++.|..++.+.+...
T Consensus 181 DG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 248 (547)
T PRK08132 181 DGARSPLREMLGLEFEGRTFEDRFLIADVKMK-ADFPTERWFWFDP-----------PFHPGQSVLLHRQPDNVWRIDFQ 248 (547)
T ss_pred CCCCcHHHHHcCCCCCCccccceEEEEEEEec-CCCCCeeeEEEec-----------cCCCCcEEEEEeCCCCeEEEEEe
Confidence 9999964433322111111111111 111122 1222121222111 00112345666666665444322
Q ss_pred cccCC---CCCChHHHHHHHHHHHHHcCCcccceeEEEEEEeeCC--CCCCCCCCCeeEeccccCccCCcchHHHHHHHH
Q 011835 322 CLASK---DGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVG--GSLPNTEQRNLAFGAAASMVHPATGYSVVRSLS 396 (476)
Q Consensus 322 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~ 396 (476)
..... .....+.+.+.+.+.+.. ...........+++. ....+..+||+|+|||||.++|+.|||+|+||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~ 324 (547)
T PRK08132 249 LGWDADPEAEKKPENVIPRVRALLGE----DVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQ 324 (547)
T ss_pred cCCCCCchhhcCHHHHHHHHHHHcCC----CCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHH
Confidence 11111 112234444444444321 111111122233332 223567899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 397 EAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 397 da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
||..||+.|+..+++..+...|+ .|++.++..
T Consensus 325 DA~~LawkLa~vl~g~~~~~lL~-------~Ye~eR~p~ 356 (547)
T PRK08132 325 DADNLAWKLALVLRGRAPDSLLD-------SYASEREFA 356 (547)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHH-------HHHHHHHHH
Confidence 99999999999887655556666 888777643
No 52
>PLN02985 squalene monooxygenase
Probab=99.96 E-value=1.2e-26 Score=239.40 Aligned_cols=286 Identities=19% Similarity=0.216 Sum_probs=163.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-CCccc-----chHHHHhcCcchhhhhh----cccceeeeC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGV-----WEDEFRDLGLEGCIEHV----WRDTVVYID 174 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~G~-----~~~~l~~~~~~~~~~~~----~~~~~~~~~ 174 (476)
+..+||+||||||+|+++|+.|+++|++|+|+||..... ...|. ....++++|+.+.+... +....++.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~- 119 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK- 119 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE-
Confidence 466899999999999999999999999999999975422 22343 24577888886655432 22233322
Q ss_pred CCCCE--Eec-----c---Cc-ceecHHHHHHHHHHHHHHC-CCeEEEEEEEEEEEcCCceEEEEe--cCce--EEECce
Q 011835 175 EDEPI--LIG-----R---AY-GRVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVAC--EHDM--IVPCRL 238 (476)
Q Consensus 175 ~~~~~--~~~-----~---~~-~~i~r~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~v~~--~~g~--~i~a~~ 238 (476)
++... .+. . +. ..++|..|.+.|++.+.+. ||+++.++++++..+++.+.+|++ .+|+ ++.||+
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdL 199 (514)
T PLN02985 120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPL 199 (514)
T ss_pred CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCE
Confidence 22211 111 1 11 2578999999999999665 799885578877766553445554 3553 467999
Q ss_pred EEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCC-CCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEE
Q 011835 239 ATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNP-YDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVF 317 (476)
Q Consensus 239 vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 317 (476)
||+|||.+|..+..+...... ......++. ..... ..++.... ....++.+.++|.+++++.
T Consensus 200 VVgADG~~S~vR~~l~~~~~~-~~s~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~l~ypi~~~~~~ 262 (514)
T PLN02985 200 TVVCDGCYSNLRRSLNDNNAE-VLSYQVGYI--SKNCRLEEPEKLHL--------------IMSKPSFTMLYQISSTDVR 262 (514)
T ss_pred EEECCCCchHHHHHhccCCCc-ceeEeEEEE--EccccCCCCCcceE--------------EcCCCceEEEEEeCCCeEE
Confidence 999999999655444322211 122222222 21111 11111111 0012344666777777654
Q ss_pred EEeecccCC-CCCChHHHHHHHHHHH-HHcCCccccee----E--EEEEEeeCCCC--CCCCCCCeeEeccccCccCCcc
Q 011835 318 FEETCLASK-DGLPFDILKKKLMARL-ERLGIQVLKTY----E--EEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPAT 387 (476)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~----~--~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~ 387 (476)
+-....... +.....++.+.+.+.. +.+...+.+.. + ......|.... ..+..+|++|+|||||+++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~ 342 (514)
T PLN02985 263 CVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAI 342 (514)
T ss_pred EEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCc
Confidence 433221111 1111122222221110 00000000000 0 01111222111 1234589999999999999999
Q ss_pred hHHHHHHHHhHHHHHHHHHHH
Q 011835 388 GYSVVRSLSEAPNYASAIAYI 408 (476)
Q Consensus 388 G~G~~~Al~da~~la~~l~~~ 408 (476)
|||||+|++||..|+++|...
T Consensus 343 GQGmn~AleDA~vLa~lL~~~ 363 (514)
T PLN02985 343 ASGMMVLLSDILILRRLLQPL 363 (514)
T ss_pred cccHhHHHHHHHHHHHHhhhc
Confidence 999999999999999999864
No 53
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=2.8e-26 Score=231.00 Aligned_cols=317 Identities=13% Similarity=0.023 Sum_probs=167.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC--ccc--c---hHHHHhcCcchhhhh--hcccceeeeCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN--YGV--W---EDEFRDLGLEGCIEH--VWRDTVVYIDED 176 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~--~G~--~---~~~l~~~~~~~~~~~--~~~~~~~~~~~~ 176 (476)
...||+||||||+||++|+.|++.|++|+|+||....... .|+ + .+.++.+|+...... ......+....+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3479999999999999999999999999999997643222 232 2 356667777443211 111122222222
Q ss_pred CCEE-eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 177 EPIL-IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 177 ~~~~-~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
.... ...+...+.+..+.+.|.+.+ .+++++ +++|++++.+++ .+.|.+.+|+++++|+||+|||.+|..+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~ 161 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGD-RVTARFADGRRETADLLVGADGGRSTVRAQLL 161 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCC-eEEEEECCCCEEEeCEEEECCCCCchHHHHhC
Confidence 2111 111222356777887777654 356788 999999998776 57788999999999999999999997655442
Q ss_pred cCCCcccceeEEEEEEEeeCCCCCCC-------ceeeeccCCCCCCCccccCC--------CCCeEEEEEEcCC-ceEEE
Q 011835 255 VGGPKVSVQTAYGVEVEVENNPYDPS-------LMVFMDYRDCTKQEVPSFES--------DNPTFLYVMPMSS-TRVFF 318 (476)
Q Consensus 255 ~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~p~~~-~~~~~ 318 (476)
... ...+.....+...+.....+.. ...+..........+..... ....+.|..+... ..+..
T Consensus 162 ~~~-~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (386)
T PRK07236 162 PDV-RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDE 240 (386)
T ss_pred CCC-CCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhh
Confidence 221 1122222222211211111111 00000000000000000000 0001223222221 00000
Q ss_pred Eee---cccCC----CCCChHHHHHHHHHHHHH-cCCcccceeEEE--EEEeeCCC--CCCCCCCCeeEeccccCccCCc
Q 011835 319 EET---CLASK----DGLPFDILKKKLMARLER-LGIQVLKTYEEE--WSYIPVGG--SLPNTEQRNLAFGAAASMVHPA 386 (476)
Q Consensus 319 ~~~---~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~p~~~--~~~~~~~rv~liGDAAh~~~P~ 386 (476)
... ...+. +....+...+.+.+.+.. +.+.+..++... ...+++.. ...+..+|++|+|||||.++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~ 320 (386)
T PRK07236 241 LLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPH 320 (386)
T ss_pred hcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCchhhhhhcccCcccccCcEEEEecccccCCCc
Confidence 000 00000 000122334444444443 444333333221 11112211 2345779999999999999999
Q ss_pred chHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 387 TGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 387 ~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
.|||+|+||+||..|+++|..... +....|. .|++.++..
T Consensus 321 ~GqG~n~aieDA~~La~~L~~~~~--~~~~al~-------~Ye~~R~~r 360 (386)
T PRK07236 321 TAAGVAKAAADAVALAEALAAAAG--DIDAALA-------AWEAERLAV 360 (386)
T ss_pred chhhHHHHHHHHHHHHHHHHhccc--chHHHHH-------HHHHHhhHH
Confidence 999999999999999999976421 1234444 677666533
No 54
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=4.8e-26 Score=239.25 Aligned_cols=304 Identities=15% Similarity=0.166 Sum_probs=172.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC---CCcccc---hHHHHhcCcchhhhhhcc------cceee
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT---NNYGVW---EDEFRDLGLEGCIEHVWR------DTVVY 172 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~---~~~G~~---~~~l~~~~~~~~~~~~~~------~~~~~ 172 (476)
...+||+||||||+||++|+.|+++|++|+|||+..... ...++. .+.++.+|+.+.+...-. .....
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 456899999999999999999999999999999876432 222232 355667777544332110 00000
Q ss_pred e-CCCCCE------------Ee--------ccC--cceecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEE
Q 011835 173 I-DEDEPI------------LI--------GRA--YGRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA 227 (476)
Q Consensus 173 ~-~~~~~~------------~~--------~~~--~~~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~ 227 (476)
. ..+... .. ..+ ...+++..|...|.+.+.+ .|++++ +++|++++.++++ +.+.
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~ 163 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VTAT 163 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EEEE
Confidence 0 011000 00 011 2257889999999999876 489999 9999999988774 4454
Q ss_pred ec---Cc--eEEECceEEEccCCCCCCccccccCCCcc-cceeEEEEEEEeeCC-C---CCCCceeeeccCCCCCCCccc
Q 011835 228 CE---HD--MIVPCRLATVASGAASGKLLEYEVGGPKV-SVQTAYGVEVEVENN-P---YDPSLMVFMDYRDCTKQEVPS 297 (476)
Q Consensus 228 ~~---~g--~~i~a~~vV~A~G~~S~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~ 297 (476)
+. +| .++++|+||+|||++|..+..+....... ..+......+..+.. . ..+....++
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------ 231 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWL------------ 231 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEE------------
Confidence 43 35 37899999999999996544332211111 122222222222110 0 001111110
Q ss_pred cCCCCCeEEEEEEcCCc-eEEEE-eecccCCCCCChHHHHHHHHHHHHHcCCccc-ceeEEEEEEeeCC--CCCCCCCCC
Q 011835 298 FESDNPTFLYVMPMSST-RVFFE-ETCLASKDGLPFDILKKKLMARLERLGIQVL-KTYEEEWSYIPVG--GSLPNTEQR 372 (476)
Q Consensus 298 ~~~~~~~~~~~~p~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~--~~~~~~~~r 372 (476)
+.+. .+..++|..++ .+.+. ............+...+.+.+.+. ..+. .+.. ...++.. ....+..+|
T Consensus 232 ~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~--~~~w~~~~~~a~~~~~gR 304 (545)
T PRK06126 232 FNPD--RRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVG---EDIDYEVLS--VVPWTGRRLVADSYRRGR 304 (545)
T ss_pred ECCC--ccEEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcC---CCCCeEEEe--ecccchhheehhhhccCC
Confidence 0111 22333344332 22222 110011112233444455444432 1111 1111 1112221 122456799
Q ss_pred eeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 373 NLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 373 v~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
|+|+|||||.++|+.|||+|+||+||..||+.|+..+++......|. .|++.++..
T Consensus 305 v~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~-------~Y~~eR~p~ 360 (545)
T PRK06126 305 VFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLD-------SYEAERRPI 360 (545)
T ss_pred EEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHh-------hhHHHhhHH
Confidence 99999999999999999999999999999999998876544455666 777776543
No 55
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=1.5e-26 Score=235.18 Aligned_cols=316 Identities=18% Similarity=0.123 Sum_probs=177.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCC-Cccc-----chHHHHhcCcchhhhhhc-------ccceeeeC
Q 011835 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTN-NYGV-----WEDEFRDLGLEGCIEHVW-------RDTVVYID 174 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~-~~G~-----~~~~l~~~~~~~~~~~~~-------~~~~~~~~ 174 (476)
+|+||||||+||++|+.|+++| ++|+||||.+.... ..|+ ....++.+|+.+.+.... ....+...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 69999999765432 1222 346677777754333211 11111111
Q ss_pred CC-CCEEe------ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 175 ED-EPILI------GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 175 ~~-~~~~~------~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
.+ ..... +.+...++|..|.+.|.+.+. ++.++ +++|++++.+++ .+.|.+.+|.++++|+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAE-EVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCC-cEEEEEcCCCEEEeeEEEECCCcc
Confidence 11 11111 112235889999999988774 34567 999999998777 578888899889999999999999
Q ss_pred CCCcccccc------CCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEE-E
Q 011835 247 SGKLLEYEV------GGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFF-E 319 (476)
Q Consensus 247 S~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~ 319 (476)
|..+..+.. ..+......+|...+.............+ +.. ............++++.+|..+++.+. .
T Consensus 159 S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 234 (414)
T TIGR03219 159 SALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGL-DEH---LVDVPQMYLGLDGHILTFPVRQGRLINVV 234 (414)
T ss_pred HHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccc-ccc---ccccceEEEcCCCeEEEEECCCCcEEEEE
Confidence 965444321 11111112223222221110000000000 000 000000011122445667887765322 1
Q ss_pred eecccC---------CCCCChHHHHHHHHHHHHHcCCcccceeEE-----EEEEeeCCCCCCCCCCCeeEeccccCccCC
Q 011835 320 ETCLAS---------KDGLPFDILKKKLMARLERLGIQVLKTYEE-----EWSYIPVGGSLPNTEQRNLAFGAAASMVHP 385 (476)
Q Consensus 320 ~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~rv~liGDAAh~~~P 385 (476)
...... ......+...+.+.+.+..+.+.+.++++. .+..+.+.....|..+|++|+|||||.|.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P 314 (414)
T TIGR03219 235 AFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLP 314 (414)
T ss_pred EEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCceeeeecccccceeeCcEEEEEcccCCCCC
Confidence 110000 000111222344555555554433332221 111122222335678999999999999999
Q ss_pred cchHHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHHhcCcH
Q 011835 386 ATGYSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNTLWPQ 438 (476)
Q Consensus 386 ~~G~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~~~~~ 438 (476)
+.|||+|+||+||..|+++|........ -...|. .|++.++.....
T Consensus 315 ~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~-------~Ye~~R~~r~~~ 361 (414)
T TIGR03219 315 HQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLE-------AYDDVRRPRACR 361 (414)
T ss_pred CcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHH-------HHHHHHhHHHHH
Confidence 9999999999999999999987543222 234444 777777644443
No 56
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.94 E-value=1.8e-24 Score=225.47 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=166.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-------Ccccc---hHHHHhcCcc--hhhhh-hc-ccce
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-------NYGVW---EDEFRDLGLE--GCIEH-VW-RDTV 170 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-------~~G~~---~~~l~~~~~~--~~~~~-~~-~~~~ 170 (476)
....+|+||||||+||++|+.|++.|++|+|||++..... ..+++ ...|+.+|+. ..+.. .. ....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3457999999999999999999999999999999753211 12232 4556666642 11111 00 0000
Q ss_pred e--eeC--CCCC-E---------EeccCc-ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEE
Q 011835 171 V--YID--EDEP-I---------LIGRAY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIV 234 (476)
Q Consensus 171 ~--~~~--~~~~-~---------~~~~~~-~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i 234 (476)
+ +.+ .+.. . ..+.+. ..++|..|.+.|.+.+.. . .++ +++|++++.+++ .+.|.+.+|.++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~-~-~i~~g~~V~~I~~~~d-~VtV~~~dG~ti 235 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE-D-VIRNESNVVDFEDSGD-KVTVVLENGQRY 235 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC-C-EEEcCCEEEEEEEeCC-EEEEEECCCCEE
Confidence 0 001 1100 0 111122 258999999999776422 1 255 889999988777 677888999889
Q ss_pred ECceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc
Q 011835 235 PCRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST 314 (476)
Q Consensus 235 ~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 314 (476)
.+|+||+|||++|..+..+...... .+.....+...++..+.+........+ .....++...|..++
T Consensus 236 ~aDlVVGADG~~S~vR~~l~g~~~~-~~sG~~~~rgi~~~~p~~~~~~~~~~~------------~G~~~~~v~~~v~~g 302 (668)
T PLN02927 236 EGDLLVGADGIWSKVRNNLFGRSEA-TYSGYTCYTGIADFIPADIESVGYRVF------------LGHKQYFVSSDVGGG 302 (668)
T ss_pred EcCEEEECCCCCcHHHHHhcCCCCC-cccceEEEEEEcCCCcccccccceEEE------------EcCCeEEEEEcCCCC
Confidence 9999999999999765544322211 222222222222211111011000000 111233444455554
Q ss_pred eEEEEee-cccCCCCCChHHHHHHHHHHHHHcCCcccceeEE----EEEEeeCC---CCCCCCCCCeeEeccccCccCCc
Q 011835 315 RVFFEET-CLASKDGLPFDILKKKLMARLERLGIQVLKTYEE----EWSYIPVG---GSLPNTEQRNLAFGAAASMVHPA 386 (476)
Q Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~p~~---~~~~~~~~rv~liGDAAh~~~P~ 386 (476)
.+.+-.. ..........+..++.+.+.+..+.+.+.+++.. ....+++. ....|..+||+|+|||||.|+|+
T Consensus 303 ~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~ 382 (668)
T PLN02927 303 KMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPN 382 (668)
T ss_pred eEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCc
Confidence 4332111 0000011123445666666666665444333221 11122222 22356789999999999999999
Q ss_pred chHHHHHHHHhHHHHHHHHHHHhc
Q 011835 387 TGYSVVRSLSEAPNYASAIAYILK 410 (476)
Q Consensus 387 ~G~G~~~Al~da~~la~~l~~~l~ 410 (476)
.|||+++||+||..||.+|..+++
T Consensus 383 ~GqG~n~AieDa~~La~~L~~~~~ 406 (668)
T PLN02927 383 MGQGGCMAIEDSFQLALELDEAWK 406 (668)
T ss_pred cccchHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 57
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=213.42 Aligned_cols=287 Identities=18% Similarity=0.141 Sum_probs=152.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-CCCc--cc---chHHHHhcCcchhhhhhccc---ceeee-CCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-TNNY--GV---WEDEFRDLGLEGCIEHVWRD---TVVYI-DEDE 177 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-~~~~--G~---~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~ 177 (476)
.+|+|||||++||++|+.|+|.|++|+|+|+.... .... ++ ..+.++..++.+.+...... ..... ..+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~ 82 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGK 82 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCCC
Confidence 48999999999999999999999999999974332 2221 22 23455666654444332211 11111 1222
Q ss_pred C---EEeccCc---ceecHHHHHHHHHHHH-HHCCCeEE-EE----EEEEEEEcCCceEEEEecCceEEECceEEEccCC
Q 011835 178 P---ILIGRAY---GRVSRHLLHEELLRRC-VESGVSYL-SS----KVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (476)
Q Consensus 178 ~---~~~~~~~---~~i~r~~l~~~L~~~~-~~~gv~i~-~~----~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~ 245 (476)
. ..++.+. ..+.|+.+...++..+ ....+.+. +. .+..++.... ...|++.+|.++++|++|+|||+
T Consensus 83 ~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~-~~~v~l~~g~~~~~dlligCDGa 161 (420)
T KOG2614|consen 83 EVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGK-KLVVHLSDGTTVKGDLLIGCDGA 161 (420)
T ss_pred eeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeeccc-ccceecCCCcEEEeeEEEEcCch
Confidence 1 1122221 1244444444444444 43344444 22 3333333333 46778889999999999999999
Q ss_pred CCCCccccccCCCcc-cceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe----
Q 011835 246 ASGKLLEYEVGGPKV-SVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE---- 320 (476)
Q Consensus 246 ~S~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---- 320 (476)
+|.++..+....+.. .++...|+. .+++. .++...++..+. +..+.|-.|.....+++-.
T Consensus 162 ~S~Vr~~l~~~~p~~~~~~ayrg~~-~~~~~-~~~~~~vf~~~~-------------~~~~~~~~~~~~~~~y~~~~k~~ 226 (420)
T KOG2614|consen 162 YSKVRKWLGFKEPRYDGSQAYRGLG-FIPNG-IPFGKKVFAIYG-------------NGLHSWPRPGFHLIAYWFLDKSL 226 (420)
T ss_pred HHHHHHHhcccCCcceeEEEEeeee-eccCC-CCcccceecccC-------------CeEEEcccCCceEEEEEeecCCc
Confidence 997666665543433 344444444 34422 122222222111 1123333333333322211
Q ss_pred ecccCCCCCChHHHHHHHHHHHHHcCCcccc---eeEEE-EEEeeCCCCC-------CCCCCCeeEeccccCccCCcchH
Q 011835 321 TCLASKDGLPFDILKKKLMARLERLGIQVLK---TYEEE-WSYIPVGGSL-------PNTEQRNLAFGAAASMVHPATGY 389 (476)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~p~~~~~-------~~~~~rv~liGDAAh~~~P~~G~ 389 (476)
++..-.+...++.+++...+....+...+.+ +...+ ....|+.... ...+++++|+|||||.|.|+.||
T Consensus 227 t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQ 306 (420)
T KOG2614|consen 227 TSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQ 306 (420)
T ss_pred ccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccc
Confidence 1000011112333333333322222222111 11111 1111121111 22356999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhc
Q 011835 390 SVVRSLSEAPNYASAIAYILK 410 (476)
Q Consensus 390 G~~~Al~da~~la~~l~~~l~ 410 (476)
|+|.|++|+.+||++|.++.+
T Consensus 307 G~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 307 GGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred cccchHHHHHHHHHHHHHhcc
Confidence 999999999999999999887
No 58
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.91 E-value=3e-23 Score=224.42 Aligned_cols=290 Identities=16% Similarity=0.142 Sum_probs=165.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCC-Ccc--cchHHHHhcCcch-----hhh---hhcccceeeeCC
Q 011835 109 DLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTN-NYG--VWEDEFRDLGLEG-----CIE---HVWRDTVVYIDE 175 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~-~~G--~~~~~l~~~~~~~-----~~~---~~~~~~~~~~~~ 175 (476)
+|+|||||||||++|+.|++. |++|+|+|+...... .+| ++...+..+...+ .+. ..|....+....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 899999999775321 223 3444444332211 111 123333333321
Q ss_pred CCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 176 DEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 176 ~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
......+.++..++|..|.+.|.+++.+.||+++ +++|+++.. ..+++|+||+|||.+|..+..++
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~~~~D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------LAADADLVIASDGLNSRIRTRYA 148 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hhcCCCEEEEcCCCCHHHHHHHH
Confidence 1111223344568999999999999999999999 888765532 11479999999999996544332
Q ss_pred c--CCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecc-c-----CC
Q 011835 255 V--GGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCL-A-----SK 326 (476)
Q Consensus 255 ~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~-----~~ 326 (476)
. ..........+.+.. ....++. ..+.... ...+..+...+|.+++...+-.... . ..
T Consensus 149 ~~~~~~~~~~~~~~~w~g--~~~~~~~--~~~~~~~----------~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 214 (765)
T PRK08255 149 DTFQPDIDTRRCRFVWLG--THKVFDA--FTFAFEE----------TEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGL 214 (765)
T ss_pred hhcCCceecCCCceEEec--CCCcccc--eeEEEEe----------cCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCC
Confidence 1 111001111122111 0001111 1110000 0111111233555544322211110 0 11
Q ss_pred CCCChHHHHHHHHHHHHHcCCcccceeEE-------EEEEeeCCCCCCCCCCC----eeEeccccCccCCcchHHHHHHH
Q 011835 327 DGLPFDILKKKLMARLERLGIQVLKTYEE-------EWSYIPVGGSLPNTEQR----NLAFGAAASMVHPATGYSVVRSL 395 (476)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~~~~r----v~liGDAAh~~~P~~G~G~~~Al 395 (476)
+..+.++..+.+.+.+..+.+.. .++.. .|..++.....+|..++ ++|+|||||.++|+.|||+++||
T Consensus 215 ~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~ai 293 (765)
T PRK08255 215 DEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLAL 293 (765)
T ss_pred ccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHH
Confidence 22345566777777777764422 22211 13333322234567778 99999999999999999999999
Q ss_pred HhHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHhc
Q 011835 396 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTL 435 (476)
Q Consensus 396 ~da~~la~~l~~~l~~~~~~~~L~~~~~~~~~~~~~w~~~ 435 (476)
+||..|+++|..... +....|. .|++.++..
T Consensus 294 eDa~~La~~L~~~~~--~~~~al~-------~ye~~R~~r 324 (765)
T PRK08255 294 EDAIELARCLHEHPG--DLPAALA-------AYEEERRVE 324 (765)
T ss_pred HHHHHHHHHHHHccc--cHHHHHH-------HHHHHHHHH
Confidence 999999999986421 2234455 777777543
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.89 E-value=1.4e-21 Score=199.19 Aligned_cols=296 Identities=21% Similarity=0.209 Sum_probs=161.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CcEEEECCCCCCCCCccc-----chHHHHhcCcchh--hh------------hhc
Q 011835 109 DLVVIGCGPAGLALAAESAKLG---LNVGLIGPDLPFTNNYGV-----WEDEFRDLGLEGC--IE------------HVW 166 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G---~~V~liE~~~~~~~~~G~-----~~~~l~~~~~~~~--~~------------~~~ 166 (476)
||+|||||+||.++|..|++.+ ++|+|||+.....-..|- ....+..+|+.+. +. ..|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999999999999999999999 999999986533222211 1223444455322 21 112
Q ss_pred cc--ceeeeCCCC--C----E----------------------------------------EeccCcc-eecHHHHHHHH
Q 011835 167 RD--TVVYIDEDE--P----I----------------------------------------LIGRAYG-RVSRHLLHEEL 197 (476)
Q Consensus 167 ~~--~~~~~~~~~--~----~----------------------------------------~~~~~~~-~i~r~~l~~~L 197 (476)
.. ...+.+-+. . . ....+++ +++|..+++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 11 011111000 0 0 0011222 68999999999
Q ss_pred HHHHHHCCCeEEEEEEEEEEEcCCc-eEEEEecCceEEECceEEEccCCCCCCcccccc---CCCcccceeEEEEEEEee
Q 011835 198 LRRCVESGVSYLSSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAASGKLLEYEV---GGPKVSVQTAYGVEVEVE 273 (476)
Q Consensus 198 ~~~~~~~gv~i~~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~---~~~~~~~~~~~g~~~~~~ 273 (476)
++.+.+.||+++..+|+++..++++ +..|.+.+|++++||+||+|+|..+....+... ............+...++
T Consensus 161 ~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~ 240 (454)
T PF04820_consen 161 RRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQVP 240 (454)
T ss_dssp HHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEecC
Confidence 9999999999995578888877665 468899999999999999999988854333211 111101111123333333
Q ss_pred CCC-CCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHHHHHHHHHHHHHcCCcccce
Q 011835 274 NNP-YDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDILKKKLMARLERLGIQVLKT 352 (476)
Q Consensus 274 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (476)
... ..+... . .....||+|.+|+.+++.. |.. .+....+.+...+.+.+.+..........
T Consensus 241 ~~~~~~~~T~-~--------------~a~~~GW~W~IPL~~~~~~-G~V--~s~~~~s~~~A~~~l~~~l~~~~~~~~~~ 302 (454)
T PF04820_consen 241 NEDPPEPYTR-S--------------TAFEAGWIWYIPLQNRRGS-GYV--YSSDFISDDEAEAELLAYLGGSPEAEPRH 302 (454)
T ss_dssp -SSCTTSSEE-E--------------EEESSEEEEEEEESSEEEE-EEE--EETTTSHHHHHHHHHHHHHTCHCTTSCEE
T ss_pred cCCCCCCcee-E--------------EecCCceEEEccCCCcceE-EEE--eccccCCHHHHHHHHHHhcchhhhcchhh
Confidence 222 111111 1 1223589999999987654 553 22333344444455555544322111111
Q ss_pred eEEEEEEeeCCCCCCCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHH
Q 011835 353 YEEEWSYIPVGGSLPNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQA 431 (476)
Q Consensus 353 ~~~~~~~~p~~~~~~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~ 431 (476)
+... .+.......+|+++|||||++++|+.+.|+..++..+..+++.|.. .. +...+. .|++.
T Consensus 303 i~~~-----~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~----~~~~~~~~~-------~Yn~~ 366 (454)
T PF04820_consen 303 IRFR-----SGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPD----DDFSPAALD-------RYNRR 366 (454)
T ss_dssp EE-S------EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHC----TTCCHHHHH-------HHHHH
T ss_pred hccc-----ccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhccc----CCCCHHHHH-------HHHHH
Confidence 1111 1113344568999999999999999999999999966555555543 22 223333 66666
Q ss_pred HHhcCcH
Q 011835 432 WNTLWPQ 438 (476)
Q Consensus 432 w~~~~~~ 438 (476)
++..+..
T Consensus 367 ~~~~~~~ 373 (454)
T PF04820_consen 367 MRREYER 373 (454)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.85 E-value=6.8e-20 Score=172.13 Aligned_cols=289 Identities=19% Similarity=0.195 Sum_probs=175.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-cc-----chHHHHhcCcchhhhhh---cccceeeeCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-GV-----WEDEFRDLGLEGCIEHV---WRDTVVYIDE 175 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-G~-----~~~~l~~~~~~~~~~~~---~~~~~~~~~~ 175 (476)
+..+||+|||||.+|.++|+.|+|.|.+|.||||+..-+.+. |. ....+.++|+++|++.. +-.....+.+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 456899999999999999999999999999999987554332 21 13567889998887643 2222223333
Q ss_pred CCCEEecc--------Ccc-eecHHHHHHHHHHHH-HHCCCeEEEEEEEEEEEcCCceEEEEecC--c--eEEECceEEE
Q 011835 176 DEPILIGR--------AYG-RVSRHLLHEELLRRC-VESGVSYLSSKVESITESTSGHRLVACEH--D--MIVPCRLATV 241 (476)
Q Consensus 176 ~~~~~~~~--------~~~-~i~r~~l~~~L~~~~-~~~gv~i~~~~v~~i~~~~~~~~~v~~~~--g--~~i~a~~vV~ 241 (476)
+....... +.| ..+-..+...|++.+ ...+|++.+..|.++..+++-+.+|++++ | .+..|.+.|+
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvV 202 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVV 202 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEE
Confidence 33322211 112 345567888888887 56689999889999888877566777654 3 3567899999
Q ss_pred ccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEee
Q 011835 242 ASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEET 321 (476)
Q Consensus 242 A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (476)
|||.+|..++.+-.+....-...+.|....-...+.+...-+++. .+..+.+.|.+...+.+...
T Consensus 203 CDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvIL~---------------~pspil~Y~ISStEvRcl~~ 267 (509)
T KOG1298|consen 203 CDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVILS---------------KPSPILVYQISSTEVRCLVD 267 (509)
T ss_pred ecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEEec---------------CCCcEEEEEecchheEEEEe
Confidence 999999655554433322122345666653333232222222221 12335566666655444333
Q ss_pred cccCC-CCCChHHHHHHHHHHHHHcCCcccceeE---------EEEEEeeCCCC--CCCCCCCeeEeccccCccCCcchH
Q 011835 322 CLASK-DGLPFDILKKKLMARLERLGIQVLKTYE---------EEWSYIPVGGS--LPNTEQRNLAFGAAASMVHPATGY 389 (476)
Q Consensus 322 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~p~~~~--~~~~~~rv~liGDAAh~~~P~~G~ 389 (476)
..... +....-++.+.+.+.+ .+++.+-++ ......|-... .+....+++++|||-.+=||.+|.
T Consensus 268 v~g~~~Psi~~gem~~~mk~~v---~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltgg 344 (509)
T KOG1298|consen 268 VPGQKLPSIANGEMATYMKESV---APQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGG 344 (509)
T ss_pred cCcccCCcccchhHHHHHHHhh---CcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCC
Confidence 22211 2222223334443332 222221111 11111222221 133457899999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhcc
Q 011835 390 SVVRSLSEAPNYASAIAYILKH 411 (476)
Q Consensus 390 G~~~Al~da~~la~~l~~~l~~ 411 (476)
||..++.|..+|-+.|....+-
T Consensus 345 GMtV~l~Di~lLr~ll~pl~dL 366 (509)
T KOG1298|consen 345 GMTVALSDIVLLRRLLKPLPDL 366 (509)
T ss_pred ceEeehhHHHHHHHHhcccccc
Confidence 9999999999999988874443
No 61
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.76 E-value=6.7e-17 Score=153.43 Aligned_cols=322 Identities=14% Similarity=0.088 Sum_probs=185.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc------CCcEEEECCCCCCCCCcccchHHHHhcCcchhhhh------------hc
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH------------VW 166 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~------------~~ 166 (476)
...+||+|||||||||++|+.|.+. .++|.|+||....+.+. +.-..++...++++++. .-
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lSGaviep~aldEL~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LSGAVIEPGALDELLPDWKEDGAPLNTPVTS 152 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ecceeeccchhhhhCcchhhcCCcccccccc
Confidence 4679999999999999999999874 47899999988766542 00011111111111110 00
Q ss_pred ccceeeeCCCCCEE-------eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecC-------
Q 011835 167 RDTVVYIDEDEPIL-------IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEH------- 230 (476)
Q Consensus 167 ~~~~~~~~~~~~~~-------~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~------- 230 (476)
+...+... ...+. .+.+...++-..|.++|-+++++.||+|+ +..+.++..++++ +.+|.++|
T Consensus 153 d~~~fLt~-~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 153 DKFKFLTG-KGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred cceeeecc-CceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 11111111 11111 11223367788999999999999999999 9999999887665 66777665
Q ss_pred --------ceEEECceEEEccCCCCCCccc------cccCCCcccceeEEEEEEEeeCCCCCCCce-eeeccCCCCCCCc
Q 011835 231 --------DMIVPCRLATVASGAASGKLLE------YEVGGPKVSVQTAYGVEVEVENNPYDPSLM-VFMDYRDCTKQEV 295 (476)
Q Consensus 231 --------g~~i~a~~vV~A~G~~S~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 295 (476)
|.++.|+..|.|.|.+...-.+ +.......+|.......++++...+.+... .-+.|....
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~---- 307 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN---- 307 (621)
T ss_pred CccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccC----
Confidence 4589999999999999842222 111222223433344456666544444433 223332210
Q ss_pred cccCCCCCeEEEEEEcCCceEEEEeecccCC--CCCC-hHHHHHHHHHHHHHcCCcccceeEE----EEEE--eeCCCCC
Q 011835 296 PSFESDNPTFLYVMPMSSTRVFFEETCLASK--DGLP-FDILKKKLMARLERLGIQVLKTYEE----EWSY--IPVGGSL 366 (476)
Q Consensus 296 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~--~p~~~~~ 366 (476)
...+++|+ ..+.+..+.+|...-.+. +-++ ..++++. + ..+.+.++++- ..+. +.-++..
T Consensus 308 ---~tYGGsFl--Yh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~-----K-~hP~i~~vleGgk~i~YgARaLNEGGfQ 376 (621)
T KOG2415|consen 308 ---DTYGGSFL--YHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKM-----K-HHPSISKVLEGGKRIAYGARALNEGGFQ 376 (621)
T ss_pred ---CccCceeE--EEcCCCeEEEEEEEEecCCCCCCCHHHHHHHh-----h-cCcchhhhhcCcceeeehhhhhccCCcc
Confidence 11233444 455777777765432222 2222 2333221 1 12333333332 1111 1223322
Q ss_pred --C-CCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCC-CcccccccCchhhHHHHHHHh-cCcHHHH
Q 011835 367 --P-NTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH-SRGRLTHEQSNENISMQAWNT-LWPQERK 441 (476)
Q Consensus 367 --~-~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~-~~~~L~~~~~~~~~~~~~w~~-~~~~e~~ 441 (476)
| ..-++=.|||-+|++++-..-.|.+.||.++.++|+.|-+++++.. +...+- ....|++..+. ...+|+.
T Consensus 377 siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~----~~~~Ye~nlkds~V~KeLy 452 (621)
T KOG2415|consen 377 SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGL----DPTTYEENLKDSYVWKELY 452 (621)
T ss_pred cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCcccccccc----ChhhHHHhhhhhHHHHHHH
Confidence 2 2235557899999999999999999999999999999999997664 211111 12356555543 4457777
Q ss_pred HHHHHH
Q 011835 442 RQRAFF 447 (476)
Q Consensus 442 ~~~~~~ 447 (476)
..|+++
T Consensus 453 svRNir 458 (621)
T KOG2415|consen 453 SVRNIR 458 (621)
T ss_pred HhhccC
Confidence 777663
No 62
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.75 E-value=4.8e-17 Score=154.79 Aligned_cols=301 Identities=18% Similarity=0.177 Sum_probs=168.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc----CCcEEEECCCC-----------CCCCCc-cc---chHHHHhcCcchhhhh-h
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDL-----------PFTNNY-GV---WEDEFRDLGLEGCIEH-V 165 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~----G~~V~liE~~~-----------~~~~~~-G~---~~~~l~~~~~~~~~~~-~ 165 (476)
..+||+||||||+|+++|..|... ..+|.|+|-.. ++.+.. .+ ....++.++.++.+.+ .
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 368999999999999999999864 47899998642 112221 11 2345556666555432 1
Q ss_pred cc---cceeeeCCCC-CEEecc-----Cc-ceecHHHHHHHHHH-HH--HHCCCeEE-EEEEEEEEEc------C-CceE
Q 011835 166 WR---DTVVYIDEDE-PILIGR-----AY-GRVSRHLLHEELLR-RC--VESGVSYL-SSKVESITES------T-SGHR 224 (476)
Q Consensus 166 ~~---~~~~~~~~~~-~~~~~~-----~~-~~i~r~~l~~~L~~-~~--~~~gv~i~-~~~v~~i~~~------~-~~~~ 224 (476)
++ ...++..-.. .+.++. +. +.+....+...|.. .+ +..+|++. ..++..+... + .-..
T Consensus 115 ~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~ 194 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWF 194 (481)
T ss_pred cccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceE
Confidence 11 1222211111 122221 11 23444445555553 22 44689999 8888887652 1 2267
Q ss_pred EEEecCceEEECceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCe
Q 011835 225 LVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPT 304 (476)
Q Consensus 225 ~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (476)
.+++.||..+.+|++|+|||.+|..+.....+-....|. .++.+....-... ......+++.|.+.+|
T Consensus 195 ~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~-~havVAtl~l~~~----------~~~~~~AwQRFlP~Gp- 262 (481)
T KOG3855|consen 195 HITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYD-QHAVVATLKLEEE----------AILNGVAWQRFLPTGP- 262 (481)
T ss_pred EEEeccCceeeeceeeccccccchhhhhcCCCccccccc-ceeeeEEEEeccc----------ccccchhHHhcCCCCc-
Confidence 888899999999999999999996443322221111121 2344433321110 0111123445566666
Q ss_pred EEEEEEcCCceEEEEeeccc--CC--CCCChHHHHHHHHHHH----------------------------HHc-------
Q 011835 305 FLYVMPMSSTRVFFEETCLA--SK--DGLPFDILKKKLMARL----------------------------ERL------- 345 (476)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~----------------------------~~~------- 345 (476)
+...|..++--.+-+.... .. ..++.+.+.+.+...| ...
T Consensus 263 -iAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q 341 (481)
T KOG3855|consen 263 -IALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQ 341 (481)
T ss_pred -eeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccc
Confidence 6677777753222111100 00 1122222222221111 111
Q ss_pred -CCcccceeEEEEEEeeCCCCC--CCCCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCC---Cccccc
Q 011835 346 -GIQVLKTYEEEWSYIPVGGSL--PNTEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH---SRGRLT 419 (476)
Q Consensus 346 -~~~~~~~~~~~~~~~p~~~~~--~~~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~---~~~~L~ 419 (476)
.+.+.++.......+|++... ....+|+.++|||||.+||..|||+|++..|...|.+.+.+++..+. |...|.
T Consensus 342 ~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~ 421 (481)
T KOG3855|consen 342 YPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLE 421 (481)
T ss_pred cCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhh
Confidence 112222222334456654332 34579999999999999999999999999999999999999987765 444444
No 63
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.68 E-value=7e-15 Score=146.23 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=112.8
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccc
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSV 262 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~ 262 (476)
..+.++...+...|.+.+++.|++++ +++|++++.+++++.+|.+.+|+ ++||.||+|+|.++..+........ ..
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~--~~ 216 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDL--PL 216 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSS--TE
T ss_pred ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccccc--cc
Confidence 44568899999999999999999999 89999999998855569999997 9999999999999866444332111 34
Q ss_pred eeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCCCChHH-------H-
Q 011835 263 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDGLPFDI-------L- 334 (476)
Q Consensus 263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~- 334 (476)
....+..+.++............... ........|+.|.. +.+.++.............. +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 285 (358)
T PF01266_consen 217 RPVRGQVLVLEPPESPLAPAILFPPV----------IFGPSDGVYIRPRP-GGVLIGTADGNYDPGPSPEDSSGEDPDVD 285 (358)
T ss_dssp EEEEEEEEEEEGCCSGSSSEEEEEEE----------CESSCTEEEEEEET-TEEEEEESECEEEESSSHHHHSHHHHHHH
T ss_pred cccceEEEEEccCCcccccccccccc----------cccccccceecccc-ccccccccccccccccccccccccccccc
Confidence 45566666665433322222211110 01112347778887 66667621100000111111 1
Q ss_pred --HHHHHHHHHHcCCccc--ceeEEEEEEeeCCCCCCCCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHH
Q 011835 335 --KKKLMARLERLGIQVL--KTYEEEWSYIPVGGSLPNTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYAS 403 (476)
Q Consensus 335 --~~~l~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~ 403 (476)
.+.+.+.+.++-+.+. ++.....+..|.. .++..++|.. .....-+.|.|+..|...|..+|+
T Consensus 286 ~~~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t------~d~~p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~ 357 (358)
T PF01266_consen 286 EEIDELLERLARLLPGLGDAEVVRSWAGIRPFT------PDGRPIIGELPGSPNLYLAGGHGGHGFTLAPGLAELLAD 357 (358)
T ss_dssp HHHHHHHHHHHHHSGGGGGSEEEEEEEEEEEEE------TTSECEEEEESSEEEEEEEECETTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhhhccccccccceeeec------cCCCeeeeecCCCCCEEEEECCCchHHHHHHHHHHHHhc
Confidence 2344555554444433 3444445555553 2333333331 111123567788888887777765
No 64
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.63 E-value=1.8e-13 Score=137.43 Aligned_cols=200 Identities=15% Similarity=0.077 Sum_probs=111.8
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccc
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSV 262 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~ 262 (476)
..+.++...+...+.+.+.+.|++++ +++|+++..+++ .+.|.+++| ++.+|.||+|+|.++..+.... . ...
T Consensus 142 ~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~-~---~~i 215 (376)
T PRK11259 142 DGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL-E---LPL 215 (376)
T ss_pred CCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eEEEEeCCC-EEEeeEEEEecCcchhhhcccc-c---CCc
Confidence 34568888888888888888999999 999999998766 567777777 6899999999999986554321 1 122
Q ss_pred eeEEEEEEEeeCCC-CC-CC-ceeeeccCCCCCCCccccCCCCCeEEEEEEcCCce-EEEEeecccCC----C---C-CC
Q 011835 263 QTAYGVEVEVENNP-YD-PS-LMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTR-VFFEETCLASK----D---G-LP 330 (476)
Q Consensus 263 ~~~~g~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~----~---~-~~ 330 (476)
....+....++..+ .. .. ...+... .. ....+|+.|..+++ +.++.+..... . . ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~~-~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~ 283 (376)
T PRK11259 216 TPVRQVLAWFQADGRYSEPNRFPAFIWE-----------VP-DGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVT 283 (376)
T ss_pred eEEEEEEEEEecCCccCCccCCCEEEEe-----------cC-CCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCC
Confidence 23334444333211 00 00 0011000 01 11236788887777 77775432110 0 0 11
Q ss_pred hHHHHHHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHHHH
Q 011835 331 FDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYASAI 405 (476)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~~l 405 (476)
.+...+.+.+.+..+-+.+..+.....+.+ +.+.++..+||-. .....-+.|.|+..|-.-|..+|+.|
T Consensus 284 ~~~~~~~l~~~~~~~~P~~~~~~~~~~g~~------~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li 357 (376)
T PRK11259 284 VAEDGAELRPFLRNYLPGVGPCLRGAACTY------TNTPDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLA 357 (376)
T ss_pred cHHHHHHHHHHHHHHCCCCCccccceEEec------ccCCCCCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHH
Confidence 133345555555554444444333233333 3344555555532 12223356778777777766666666
Q ss_pred HH
Q 011835 406 AY 407 (476)
Q Consensus 406 ~~ 407 (476)
..
T Consensus 358 ~~ 359 (376)
T PRK11259 358 QD 359 (376)
T ss_pred hc
Confidence 54
No 65
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.62 E-value=6.9e-14 Score=144.00 Aligned_cols=205 Identities=15% Similarity=0.030 Sum_probs=108.9
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccc
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSV 262 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~ 262 (476)
..+.++...+...|.+.+.+.|++|+ +++|++++. ++ .+.|.+.+| ++.||.||+|+|+++..+...... ..
T Consensus 176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~~----~~ 248 (460)
T TIGR03329 176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-PAVVRTPDG-QVTADKVVLALNAWMASHFPQFER----SI 248 (460)
T ss_pred CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-ceEEEeCCc-EEECCEEEEcccccccccChhhcC----eE
Confidence 34578899999999999999999999 999999975 33 466777776 589999999999998654332111 11
Q ss_pred eeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc----CC--C-CCChHHHH
Q 011835 263 QTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA----SK--D-GLPFDILK 335 (476)
Q Consensus 263 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~--~-~~~~~~~~ 335 (476)
....+..+.++ +...... ...+... ..+......+.|+.|..++++.+|..... .. + ........
T Consensus 249 ~p~~~~~~~t~--pl~~~~~-~~~~~~~-----~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~ 320 (460)
T TIGR03329 249 AIVSSDMVITE--PAPDLLA-ATGLDHG-----TSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYE 320 (460)
T ss_pred EEeccceEecC--CCcHHHH-hhcCCCC-----ceEecchhhhhheeECCCCcEEEcCCccccccCcccccccCCchHHH
Confidence 11222222221 1111100 0000000 00001111224566777777777643110 00 0 00112233
Q ss_pred HHHHHHHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHHHHHH
Q 011835 336 KKLMARLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYASAIAY 407 (476)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~~l~~ 407 (476)
+.+.+.+.++-+.+....-. ..|.+..+.+.++..+||-. .....-++|.|+.++...+.++|+.|..
T Consensus 321 ~~l~~~~~~~fP~L~~~~i~----~~W~G~~~~t~D~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g 393 (460)
T TIGR03329 321 ALLTRSLRKFFPALAEVPIA----ASWNGPSDRSVTGLPFFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLG 393 (460)
T ss_pred HHHHHHHHHhCCCcCCCeee----EEEeceeCCCCCCCceeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcC
Confidence 44555555444433322111 12333444444555555521 2223346788999988888888887743
No 66
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.61 E-value=1.9e-13 Score=138.81 Aligned_cols=197 Identities=13% Similarity=0.060 Sum_probs=107.3
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc-CCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccce
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQ 263 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~ 263 (476)
+.++...+...|.+.+.+.|++++ +++|++++.. +++.+.|.+.+| ++.++.||+|+|.++..+........ ...
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~--~~~ 254 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRL--PIE 254 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCC--CcC
Confidence 457777888889999999999999 8999999865 343556777777 58999999998888864433221111 111
Q ss_pred eEEEEEEEeeCCCCCCCc-eeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecc-c-CCCCCChHHHHHHHHH
Q 011835 264 TAYGVEVEVENNPYDPSL-MVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCL-A-SKDGLPFDILKKKLMA 340 (476)
Q Consensus 264 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~ 340 (476)
...+..+..+ +..+.. ..++ . ....+|+.|..++++.++.+.. . .....+.....+.+.+
T Consensus 255 ~~~~~~~~~~--~~~~~~~~~~~-------------~--~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~ 317 (407)
T TIGR01373 255 SHPLQALVSE--PLKPIIDTVVM-------------S--NAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLA 317 (407)
T ss_pred cccceEEEec--CCCCCcCCeEE-------------e--CCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHH
Confidence 1111111121 111100 0111 0 1123678888888888875421 1 1111112233344444
Q ss_pred HHHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEecccc----CccCCcchHHHHHHHHhHHHHHHHHH
Q 011835 341 RLERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAAA----SMVHPATGYSVVRSLSEAPNYASAIA 406 (476)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDAA----h~~~P~~G~G~~~Al~da~~la~~l~ 406 (476)
.+..+-+.+..... ...|.+..+.+.++..+||..- ....-+.|.|+.+|-..|.++|+.|.
T Consensus 318 ~~~~~~P~l~~~~~----~~~w~G~~~~t~D~~PiIg~~~~~gl~~a~G~~g~G~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 318 AILEMFPILSRVRM----LRSWGGIVDVTPDGSPIIGKTPLPNLYLNCGWGTGGFKATPASGTVFAHTLA 383 (407)
T ss_pred HHHHhCCCcCCCCe----EEEeccccccCCCCCceeCCCCCCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence 44444333322111 1123444555566666666531 11123557788777777777777665
No 67
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.61 E-value=1.6e-13 Score=139.85 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=53.0
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
+.++...+...|.+.+.+.|++++ +++|++++.+++++..|.+.++ ++++|.||+|+|.++..+.
T Consensus 196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~ 261 (416)
T PRK00711 196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALL 261 (416)
T ss_pred ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHH
Confidence 356777888999999999999999 8999999887764455666654 6899999999999986543
No 68
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=9.8e-13 Score=136.76 Aligned_cols=209 Identities=13% Similarity=0.075 Sum_probs=123.2
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc----eEEECceEEEccCCCCCCccccccCCC-c
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD----MIVPCRLATVASGAASGKLLEYEVGGP-K 259 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g----~~i~a~~vV~A~G~~S~~~~~~~~~~~-~ 259 (476)
+.++...|...+...+.+.|++++ +++|+++..+++ .+.|.+.++ .+++|+.||.|+|.++..+.....+.. .
T Consensus 150 g~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~ 228 (502)
T PRK13369 150 CWVDDARLVVLNALDAAERGATILTRTRCVSARREGG-LWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSS 228 (502)
T ss_pred eeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCC-EEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCC
Confidence 357788899999999999999999 899999988765 566766554 468999999999999976544221111 1
Q ss_pred ccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCC----CCCChHHHH
Q 011835 260 VSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASK----DGLPFDILK 335 (476)
Q Consensus 260 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~ 335 (476)
.......|..+.++.. +........ ......++|++|..++.+.+|.+..... +....++-.
T Consensus 229 ~~v~p~kG~~lv~~~~-~~~~~~~~~-------------~~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i 294 (502)
T PRK13369 229 RNVRLVKGSHIVVPKF-WDGAQAYLF-------------QNPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEI 294 (502)
T ss_pred cceEEeeEEEEEeCCc-cCCCceEEE-------------eCCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHH
Confidence 2344566766655422 221111111 1112356899999877778887643211 111223333
Q ss_pred HHHHHHHHHc-C--CcccceeEEEEEEeeCCCCC---CC-CCCCeeEeccc----cCccCCcchHHHHHHHHhHHHHHHH
Q 011835 336 KKLMARLERL-G--IQVLKTYEEEWSYIPVGGSL---PN-TEQRNLAFGAA----ASMVHPATGYSVVRSLSEAPNYASA 404 (476)
Q Consensus 336 ~~l~~~~~~~-~--~~~~~~~~~~~~~~p~~~~~---~~-~~~rv~liGDA----Ah~~~P~~G~G~~~Al~da~~la~~ 404 (476)
+.+.+.+..+ . ....+++....+..|+.... +. ......+.-+. .+.++-. |.+++..-..|..+.+.
T Consensus 295 ~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~-Ggk~Tt~r~~Ae~v~d~ 373 (502)
T PRK13369 295 DYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVF-GGKITTFRKLAEHALER 373 (502)
T ss_pred HHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEe-CChHhhHHHHHHHHHHH
Confidence 4444444433 2 22345666667778875311 11 11112222221 2333433 45788888888888888
Q ss_pred HHHHhc
Q 011835 405 IAYILK 410 (476)
Q Consensus 405 l~~~l~ 410 (476)
+.+.+.
T Consensus 374 ~~~~l~ 379 (502)
T PRK13369 374 LKPFFP 379 (502)
T ss_pred HHHhcC
Confidence 887764
No 69
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=138.64 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=97.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC--------ccc-----chHHHHhcCc-----chhhhhhcc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN--------YGV-----WEDEFRDLGL-----EGCIEHVWR 167 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~--------~G~-----~~~~l~~~~~-----~~~~~~~~~ 167 (476)
+.+||+|||||||||+||+.+++.|.+|+|||+.+..++- |.+ ..+.+....- ...+..+-.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 3579999999999999999999999999999997755432 111 1222222210 111111100
Q ss_pred -cceeeeCCCCCEEe----ccCcce-ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEE
Q 011835 168 -DTVVYIDEDEPILI----GRAYGR-VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLAT 240 (476)
Q Consensus 168 -~~~~~~~~~~~~~~----~~~~~~-i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV 240 (476)
+..-++.......+ |+-+.. ..-..+.+.|++++++.||+++ +++|.+++.++. ...+.+++|++++||.+|
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-GFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-eEEEEcCCCCEEEccEEE
Confidence 11111221111111 111221 3457799999999999999999 999999999886 788999999889999999
Q ss_pred EccCCCCCC
Q 011835 241 VASGAASGK 249 (476)
Q Consensus 241 ~A~G~~S~~ 249 (476)
+|+|..|..
T Consensus 161 lAtGG~S~P 169 (408)
T COG2081 161 LATGGKSWP 169 (408)
T ss_pred EecCCcCCC
Confidence 999988854
No 70
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.59 E-value=2.3e-13 Score=138.34 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=50.4
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-----eEEECceEEEccCCCCCCcc
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-----~~i~a~~vV~A~G~~S~~~~ 251 (476)
.++...+...|.+.+.+.|++++ +++|++++.+++ .+.+.+.++ .+++||.||+|+|.++..+.
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~ 262 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGG-GVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALA 262 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCccceEecCEEEECCCcChHHHH
Confidence 45667788899999999999999 899999987666 444544332 36899999999999986544
No 71
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.58 E-value=3.6e-13 Score=144.73 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=56.2
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
.+.++...+...|.+.+.+ |++++ +++|+++..+++ .+.|.+.+|..+++|.||+|+|.++..+..
T Consensus 402 ~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~-~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 402 GGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD-GWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred CCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC-EEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 3568889999999999988 99999 999999988776 566888888778899999999999976544
No 72
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.56 E-value=1.7e-12 Score=130.57 Aligned_cols=67 Identities=19% Similarity=0.125 Sum_probs=55.2
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
..+.++...+...|.+.+.+.|++++ +++|++++.+++ .+.|.+.++ ++.+|.||+|+|.++..+..
T Consensus 138 ~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~-~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~ 205 (380)
T TIGR01377 138 NGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTEL-LVTVKTTKG-SYQANKLVVTAGAWTSKLLS 205 (380)
T ss_pred CCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC-eEEEEeCCC-EEEeCEEEEecCcchHHHhh
Confidence 34578888999999999999999999 999999988766 566777666 68999999999998765543
No 73
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.56 E-value=3.5e-14 Score=133.93 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=90.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-cccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.++||+||||||||+++|+.|++.|++|+|+|+....... ++- ...+....+........+...+.+. .....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g-g~~~~~~~v~~~~~~~l~~~gv~~~-----~~~~g 97 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG-GMLFNKIVVQEEADEILDEFGIRYK-----EVEDG 97 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC-ccccccccchHHHHHHHHHCCCCce-----eecCc
Confidence 4589999999999999999999999999999987654321 110 0001111111111111111111100 01122
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC-ceEEEEec-----------CceEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACE-----------HDMIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~v~~~-----------~g~~i~a~~vV~A~G~~S~ 248 (476)
+..+++..+...|.+.+.+.|++++ +++|+++..+++ .+.++.+. +..+++|+.||+|||.++.
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 3357899999999999999999999 999999987655 35555442 2257999999999998874
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.56 E-value=4.8e-14 Score=132.53 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=90.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.++||+|||||||||++|+.|++.|++|+|+||....+. .|+-. ..+..+.+............+.+ ...+..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg-~~~~~~~~~~~~~~~l~~~gi~~-----~~~~~g 93 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG-MLFSKIVVEKPAHEILDEFGIRY-----EDEGDG 93 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC-cceecccccchHHHHHHHCCCCe-----eeccCc
Confidence 358999999999999999999999999999999876532 22110 00111111110011111111100 011222
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC--ceEEEEec-----------CceEEECceEEEccCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS--GHRLVACE-----------HDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~--~~~~v~~~-----------~g~~i~a~~vV~A~G~~S 247 (476)
+...++..+...|.+++.+.|++++ ++.|+++..+++ .+.+|.++ +..+++|++||+|||..+
T Consensus 94 ~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 94 YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 3346888999999999999999999 999999988766 35566553 235799999999999766
No 75
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.56 E-value=3.6e-13 Score=135.86 Aligned_cols=205 Identities=16% Similarity=0.033 Sum_probs=114.2
Q ss_pred CcceecHHHHHHHHHHHHHHCCC-eEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCccc
Q 011835 184 AYGRVSRHLLHEELLRRCVESGV-SYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVS 261 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv-~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~ 261 (476)
..+.++...+...|.+.+.+.|+ .+. ++.+..+..+. +.+.|.+.+|. +.||.||+|+|.++..+..... .....
T Consensus 149 ~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~-~~~~~ 225 (387)
T COG0665 149 TGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLG-ELPLP 225 (387)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC-CCcCc
Confidence 44568888999999999999994 555 88888888753 47888888887 9999999999999976543332 11112
Q ss_pred ceeEEEEEEEeeCCCCCCCce-eeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccC--CC-CCChHH-HHH
Q 011835 262 VQTAYGVEVEVENNPYDPSLM-VFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLAS--KD-GLPFDI-LKK 336 (476)
Q Consensus 262 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~-~~~~~~-~~~ 336 (476)
.....+..+.++..+...... .+.. ........|+.|..++++.++.+.... .. ...... ...
T Consensus 226 ~~p~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (387)
T COG0665 226 LRPVRGQALTTEPPEGLLADGLAPVV------------LVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIA 293 (387)
T ss_pred cccccceEEEecCCCccccccccceE------------EEecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHH
Confidence 334455555444322111100 0000 011123377888888888887654332 11 111111 122
Q ss_pred HHHHHHHHcCCcccceeEEEEEEeeCCCCCCCC-CCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHHHHHH
Q 011835 337 KLMARLERLGIQVLKTYEEEWSYIPVGGSLPNT-EQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYASAIAY 407 (476)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~~l~~ 407 (476)
.+...+..+-+.+....... .|.+..+.. .++..+||-+ .....-+.|.|+..+-..|.++|+.|..
T Consensus 294 ~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~~P~iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 294 ELLRVARALLPGLADAGIEA----AWAGLRPPTTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLADLILG 366 (387)
T ss_pred HHHHHHHHhCccccccccce----eeeccccCCCCCCCceeCCCCCCCCEEEEecCCCcChhhccHHHHHHHHHHcC
Confidence 33333433333333222111 344444544 6777777741 1122235566777666666666665554
No 76
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.54 E-value=5.5e-12 Score=131.15 Aligned_cols=209 Identities=14% Similarity=0.089 Sum_probs=119.6
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC---c--eEEECceEEEccCCCCCCccccc-cCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKLLEYE-VGGP 258 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g--~~i~a~~vV~A~G~~S~~~~~~~-~~~~ 258 (476)
+.++...|...+.+.+.+.|++++ +++|+++..+++ .+.|.+.+ | .+++|+.||.|+|.++..+.... ....
T Consensus 150 g~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~ 228 (508)
T PRK12266 150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRENG-LWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228 (508)
T ss_pred cccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCC-EEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence 457778888888888999999999 899999987765 56666553 4 37899999999999996553321 1111
Q ss_pred cccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc--CC--CCCChHHH
Q 011835 259 KVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA--SK--DGLPFDIL 334 (476)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~--~~~~~~~~ 334 (476)
........|..+.++. .+......++ ......++|++|..++...+|.+... .. +....++-
T Consensus 229 ~~~i~p~kG~~lvl~~-~~~~~~~~~~-------------~~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~ 294 (508)
T PRK12266 229 PYGIRLVKGSHIVVPR-LFDHDQAYIL-------------QNPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEE 294 (508)
T ss_pred CcceeeeeeEEEEECC-cCCCCcEEEE-------------eCCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHH
Confidence 1133445566655542 1221111111 11234668999998888888865321 11 11223333
Q ss_pred HHHHHHHHHHcC---CcccceeEEEEEEeeCCCC-CC---CC-CCCeeEecc---ccCccCCcchHHHHHHHHhHHHHHH
Q 011835 335 KKKLMARLERLG---IQVLKTYEEEWSYIPVGGS-LP---NT-EQRNLAFGA---AASMVHPATGYSVVRSLSEAPNYAS 403 (476)
Q Consensus 335 ~~~l~~~~~~~~---~~~~~~~~~~~~~~p~~~~-~~---~~-~~rv~liGD---AAh~~~P~~G~G~~~Al~da~~la~ 403 (476)
.+.+.+.+..+- ....+++....+..|+... .+ .. .+-++...+ ..+.++-.+| .++..-.-|....+
T Consensus 295 i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Gg-k~Tt~r~mAe~~~~ 373 (508)
T PRK12266 295 IDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGG-KITTYRKLAEHALE 373 (508)
T ss_pred HHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcC-hHHHHHHHHHHHHH
Confidence 455555544432 2334566667777886432 11 11 122222221 2334444444 46666666677777
Q ss_pred HHHHHhc
Q 011835 404 AIAYILK 410 (476)
Q Consensus 404 ~l~~~l~ 410 (476)
.+.+.+.
T Consensus 374 ~~~~~l~ 380 (508)
T PRK12266 374 KLAPYLP 380 (508)
T ss_pred HHHHhcC
Confidence 7766654
No 77
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.54 E-value=1e-13 Score=138.71 Aligned_cols=137 Identities=21% Similarity=0.236 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC--------cc--------------------cchHHHHhcCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN--------YG--------------------VWEDEFRDLGLE 159 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~--------~G--------------------~~~~~l~~~~~~ 159 (476)
|||+|||||||||+||+.|++.|++|+|+||....+.. |. .....+..+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999997654311 10 011222222222
Q ss_pred hhhhhhcccce-eeeCCCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECc
Q 011835 160 GCIEHVWRDTV-VYIDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCR 237 (476)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~ 237 (476)
+.+...-.... ........ .+. . .-....+.+.|++.+++.||+++ +++|.+++.++++.+.|.++++.++.||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr-~fP--~-s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~ 156 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGR-VFP--K-SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD 156 (409)
T ss_dssp HHHHHHHHTT--EEE-STTE-EEE--T-T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES
T ss_pred HHHHHHHhcCCeEEEcCCCE-ECC--C-CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC
Confidence 22221111111 11111111 111 0 12457788999999999999999 9999999998886788988777899999
Q ss_pred eEEEccCCCCC
Q 011835 238 LATVASGAASG 248 (476)
Q Consensus 238 ~vV~A~G~~S~ 248 (476)
.||+|+|..|.
T Consensus 157 ~vILAtGG~S~ 167 (409)
T PF03486_consen 157 AVILATGGKSY 167 (409)
T ss_dssp EEEE----SSS
T ss_pred EEEEecCCCCc
Confidence 99999998874
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=8.7e-14 Score=122.18 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=90.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-cccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
..||+||||||+||+||++|++.|++|+|||+...++.. ||- -..+..+-++.......++..+.+. ..+..+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G-Gmlf~~iVv~~~a~~iL~e~gI~ye-----~~e~g~ 103 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG-GMLFNKIVVREEADEILDEFGIRYE-----EEEDGY 103 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc-ccccceeeecchHHHHHHHhCCcce-----ecCCce
Confidence 469999999999999999999999999999997765533 221 1111111111111111111111111 112233
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC-ceEEEEec-----------CceEEECceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACE-----------HDMIVPCRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~v~~~-----------~g~~i~a~~vV~A~G~~S 247 (476)
...+...+...|..++.+.|++++ ...|+++...++ ++.+|.++ |--++++++||+|||.-.
T Consensus 104 ~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 104 YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred EEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 467888899999999999999999 899999987776 45555543 234789999999999443
No 79
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.52 E-value=9.8e-14 Score=122.83 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=83.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.++||+||||||+||+||+.|++.|++|+|||+....+. .|+- -..+.+.-++.......++..+.+ ...+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G-g~lf~~iVVq~~a~~iL~elgi~y-----~~~~~g 89 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG-GMLFNKIVVQEEADEILDELGIPY-----EEYGDG 89 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS--CTT---EEEETTTHHHHHHHT--------EE-SSE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc-ccccchhhhhhhHHHHHHhCCcee-----EEeCCe
Confidence 458999999999999999999999999999998765542 3321 011111111111111112111111 112233
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC-CceEEEEec-----------CceEEECceEEEccCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACE-----------HDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~v~~~-----------~g~~i~a~~vV~A~G~~S 247 (476)
+...+...+...|...+.+.|++++ ...|+++...+ +++.+|.++ |--++++++||+|||.-+
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 3457889999999999988999999 88999998777 555566554 224899999999999544
No 80
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.51 E-value=3e-13 Score=139.49 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=96.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC-CCC-----CC-----cccchHHHHhcCc--chhhhhhcccceee
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL-PFT-----NN-----YGVWEDEFRDLGL--EGCIEHVWRDTVVY 172 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~-~~~-----~~-----~G~~~~~l~~~~~--~~~~~~~~~~~~~~ 172 (476)
..|||+|||||+||+.||+.+++.|.+|+|+|+.. ..+ .. .|.+.+.++.++- ...+..........
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999863 111 11 1233444444431 11111111111111
Q ss_pred eCCCCCEEeccCcceecHHHHHHHHHHHHHHC-CCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVES-GVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 173 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.....+. ...+.+.+++..+...+.+.+.+. |++++.+.|+++..+++.+.+|.+.+|..+.|+.||+|||.++.
T Consensus 83 n~skGpA-V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 83 NTSKGPA-VRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred ccCCCCc-eeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 1111111 112234689999999999998755 89988888999988777677899999999999999999998774
No 81
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.49 E-value=1.8e-11 Score=128.39 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=112.9
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC---c--eEEECceEEEccCCCCCCccccccCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g--~~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
.+.++...|...+...+.+.|++++ +++|+++..++++++.|.+.+ + .+++|+.||.|+|.++..+..+.. .
T Consensus 143 dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g--~ 220 (546)
T PRK11101 143 DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD--L 220 (546)
T ss_pred CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC--C
Confidence 3678999999999999999999999 999999998776555666532 2 479999999999999976554332 1
Q ss_pred cccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccC--C----CCCChH
Q 011835 259 KVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLAS--K----DGLPFD 332 (476)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~----~~~~~~ 332 (476)
........|..+.++. ... ..++.... .+.... ++.|. ++.+.+|.+.... . ...+.+
T Consensus 221 ~~~i~p~kG~~lv~~~-~~~--~~vi~~~~----------~~~~~~--~~vp~-~~~~liGtT~~~~~~~~~~~~~~t~~ 284 (546)
T PRK11101 221 RIRMFPAKGSLLIMDH-RIN--NHVINRCR----------KPADAD--ILVPG-DTISLIGTTSTRIDYDQIDDNRVTAE 284 (546)
T ss_pred CCceeecceEEEEECC-ccC--ceeEeccC----------CCCCCC--EEEec-CCEEEEeeCCCCccCCCcCCCCCCHH
Confidence 2233445565555542 111 11111000 001111 24563 4566777653211 1 112233
Q ss_pred HHHHHHHHHHHHcCCc--ccceeEEEEEEeeCCCCC--C---CCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHH
Q 011835 333 ILKKKLMARLERLGIQ--VLKTYEEEWSYIPVGGSL--P---NTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPN 400 (476)
Q Consensus 333 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~--~---~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~ 400 (476)
+ .+.+.+....+-+. ..+++....+..|+.... + ......+++++. .++++-.+|. ++.+-.-|..
T Consensus 285 ~-i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGk-ltt~r~~Ae~ 362 (546)
T PRK11101 285 E-VDILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGK-LMTYRLMAEW 362 (546)
T ss_pred H-HHHHHHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECCh-HHHHHHHHHH
Confidence 3 34444444444333 345666667777763211 1 112345667643 4455554443 4443344555
Q ss_pred HHHHHHHHh
Q 011835 401 YASAIAYIL 409 (476)
Q Consensus 401 la~~l~~~l 409 (476)
+.+.+.+.+
T Consensus 363 v~d~v~~~l 371 (546)
T PRK11101 363 ATDAVCRKL 371 (546)
T ss_pred HHHHHHHhc
Confidence 555555543
No 82
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.49 E-value=2.9e-11 Score=128.28 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=113.9
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC--CceEEEEec---Cce--EEECceEEEccCCCCCCccccccCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST--SGHRLVACE---HDM--IVPCRLATVASGAASGKLLEYEVGG 257 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~~~~v~~~---~g~--~i~a~~vV~A~G~~S~~~~~~~~~~ 257 (476)
+.++...|...|.+.+.+.|++++ +++|+++..++ ++++.|.+. +++ ++.+|.||+|+|.+|..+.......
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 568889999999999999999999 88999998763 435555542 332 6899999999999997665544222
Q ss_pred CcccceeEEEEEEEeeCCCCCCCce-eeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccC---CCCCChHH
Q 011835 258 PKVSVQTAYGVEVEVENNPYDPSLM-VFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLAS---KDGLPFDI 333 (476)
Q Consensus 258 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~ 333 (476)
.........|..+.++.. +.+... ..+. .......++++|. .+.+.+|.+.... .+....++
T Consensus 307 ~~~~I~p~kG~hlvl~~~-~~~~~~~~i~~------------~~~dgr~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ 372 (627)
T PLN02464 307 AKPMICPSSGVHIVLPDY-YSPEGMGLIVP------------KTKDGRVVFMLPW-LGRTVAGTTDSKTPITMLPEPHED 372 (627)
T ss_pred CCCceEeeeeEEEecccc-cCCCCceEEec------------CCCCCCEEEEEec-CCcEEEecCCCCCCCCCCCCCCHH
Confidence 222345566766655421 112211 1111 1122345889999 6677888553221 11212223
Q ss_pred HHHHHHHHHHHcC---CcccceeEEEEEEeeCCCC-CCC-----CCCCeeEeccccCccCCcchHHHHHHHHhHHHHHHH
Q 011835 334 LKKKLMARLERLG---IQVLKTYEEEWSYIPVGGS-LPN-----TEQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASA 404 (476)
Q Consensus 334 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~p~~~~-~~~-----~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~ 404 (476)
-.+.+.+.+..+- ....+++....+..|+... .+. ..+.++.. +.-+.+.-..|. .++.-.-|..+.+.
T Consensus 373 ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~-~~~gli~i~GGk-~Tt~R~mAe~~~d~ 450 (627)
T PLN02464 373 EIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCE-EPDGLVTITGGK-WTTYRSMAEDAVDA 450 (627)
T ss_pred HHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEe-cCCCeEEEECCh-HHHHHHHHHHHHHH
Confidence 3344444443332 2334555666677786532 111 12333332 222333333333 45544445555555
Q ss_pred HHH
Q 011835 405 IAY 407 (476)
Q Consensus 405 l~~ 407 (476)
+.+
T Consensus 451 ~~~ 453 (627)
T PLN02464 451 AIK 453 (627)
T ss_pred HHH
Confidence 544
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.44 E-value=3.6e-12 Score=128.78 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=80.1
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccce
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQ 263 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~ 263 (476)
.+.++...+.+.|.+.+++.|++++ +++|+++..+++ .+.|.+.++ ++.+|.||+|+|.+|..+.............
T Consensus 143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~ 220 (393)
T PRK11728 143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN-GVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIV 220 (393)
T ss_pred ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC-eEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceE
Confidence 3578889999999999999999999 999999987766 466777766 6999999999999996544332211112334
Q ss_pred eEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEe
Q 011835 264 TAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEE 320 (476)
Q Consensus 264 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (476)
...|..+.+.......-...++..... .....-.++.|..++++.+|.
T Consensus 221 p~rGq~~~~~~~~~~~~~~~v~~~p~~---------~~~~~g~~~~p~~~G~~~~G~ 268 (393)
T PRK11728 221 PFRGEYYRLAPEKNQLVNHLIYPVPDP---------AFPFLGVHLTRMIDGSVTVGP 268 (393)
T ss_pred EeeeEEEEeccccccccCCceecCCCC---------CCCcceEEeecCCCCCEEECC
Confidence 456666655432111111111111100 000112577899899998885
No 84
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.40 E-value=7.5e-11 Score=110.21 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=97.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC---ccc-----------------------ch---------
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGV-----------------------WE--------- 150 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~---~G~-----------------------~~--------- 150 (476)
...||+|||||+-|+++|+.|+|.|.+++++|+-+....+ .|. |.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 4579999999999999999999999999999985533211 010 00
Q ss_pred ---------------HHHH---hc----Ccc------hhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 151 ---------------DEFR---DL----GLE------GCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 151 ---------------~~l~---~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
..+. .. ++. ..+...++. ...++++.........|.+....-.+.|...+.
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 0000 00 000 000011111 112222222233344567888888899999999
Q ss_pred HCCCeEE-EEEEEEEEEc--CCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 203 ESGVSYL-SSKVESITES--TSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
+.|+.++ +.+|+.+... ++.++.|.+.+|..+.|+.+|.|.|+|-.+++.
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 9999999 8888887743 333788999999889999999999999876654
No 85
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.40 E-value=4.2e-11 Score=119.85 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=49.0
Q ss_pred cceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 185 YGRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
.+.++...+...|.+.+.+. |++++ +++|++++.. .|.+.+|. ++||.||+|+|.++..+.
T Consensus 139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t~~g~-i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRTSRGD-VHADQVFVCPGADFETLF 201 (365)
T ss_pred CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEeCCCc-EEeCEEEECCCCChhhhC
Confidence 35688888999999988765 99999 8999999642 46666664 789999999999986543
No 86
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.40 E-value=7.5e-13 Score=145.43 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=102.5
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCC-CCCCCCCCcccEEEECCCHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKL-PPISIGNGILDLVVIGCGPAGL 120 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dVvIIGgG~aGl 120 (476)
...||||++..|+. +|++. +++|.++..+.+..+........ ..+..... .+.. .....+|+|||||||||
T Consensus 248 ~~GrVCp~~~~CE~----~C~~~--~~pV~I~~ler~i~d~~~~~~~~-~~~~~~~~~~~~~-~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 248 VTGRVCPQELQCQG----VCTHT--KRPIEIGQLEWYLPQHEKLVNPN-ANERFAGRISPWA-AAVKPPIAVVGSGPSGL 319 (944)
T ss_pred HhcCcCCCccCHHH----hccCC--CcCcchhHHHHHHHHHHHhhchh-hhhcccccccccc-cCCCCeEEEECCCHHHH
Confidence 44799999999998 89887 45999998877655421111000 00000000 0100 12357999999999999
Q ss_pred HHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHH
Q 011835 121 ALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRR 200 (476)
Q Consensus 121 ~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~ 200 (476)
+||+.|++.|++|+|||+....+.. ..++.|...+.+..+ +...+.
T Consensus 320 saA~~Lar~G~~VtVfE~~~~~GG~---------------------------------l~yGIP~~rlp~~vi-~~~i~~ 365 (944)
T PRK12779 320 INAYLLAVEGFPVTVFEAFHDLGGV---------------------------------LRYGIPEFRLPNQLI-DDVVEK 365 (944)
T ss_pred HHHHHHHHCCCeEEEEeeCCCCCce---------------------------------EEccCCCCcChHHHH-HHHHHH
Confidence 9999999999999999987533211 111222223444433 344577
Q ss_pred HHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 201 CVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
+++.||+++ ++.+- ..+++++.....+|.||+|+|++....+.++
T Consensus 366 l~~~Gv~f~~n~~vG---------~dit~~~l~~~~yDAV~LAtGA~~pr~l~Ip 411 (944)
T PRK12779 366 IKLLGGRFVKNFVVG---------KTATLEDLKAAGFWKIFVGTGAGLPTFMNVP 411 (944)
T ss_pred HHhhcCeEEEeEEec---------cEEeHHHhccccCCEEEEeCCCCCCCcCCCC
Confidence 778899999 77652 2344445444579999999999754444444
No 87
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.38 E-value=5.2e-12 Score=123.86 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=89.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEE-CCCCCCC-----CCc-----ccchHHHHhcCcchhhhhhcccceeee--CC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLI-GPDLPFT-----NNY-----GVWEDEFRDLGLEGCIEHVWRDTVVYI--DE 175 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~li-E~~~~~~-----~~~-----G~~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 175 (476)
||+|||||+||+.||+.+++.|.+|+|+ ++..... +.. |....+++.++ +.+....+...+.+ .+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalg--g~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALG--GLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT---SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhh--hHHHHHHhHhhhhhhccc
Confidence 8999999999999999999999999999 3322221 111 22344555554 22322233222211 11
Q ss_pred CCCEE-eccCcceecHHHHHHHHHHHHHH-CCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCC
Q 011835 176 DEPIL-IGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (476)
Q Consensus 176 ~~~~~-~~~~~~~i~r~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~ 245 (476)
...-. ...+...++|..+.+.+.+.+++ .+++++.++|+++..+++.+.+|.+.+|.++.+|.||+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 11100 01111258999999999999977 689988889999999888899999999999999999999998
No 88
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=119.84 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=109.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCC-----CCccc-----------------------chHHHHh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFT-----NNYGV-----------------------WEDEFRD 155 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~-----~~~G~-----------------------~~~~l~~ 155 (476)
.++||+|||||+.|+++|++|++.+ ++|+|+||..... ++.|+ +.+..++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 9999999965432 12111 1111111
Q ss_pred cCcc--h--------------hhhhhcccc---e---e-eeC---------C----CCCEEeccCcceecHHHHHHHHHH
Q 011835 156 LGLE--G--------------CIEHVWRDT---V---V-YID---------E----DEPILIGRAYGRVSRHLLHEELLR 199 (476)
Q Consensus 156 ~~~~--~--------------~~~~~~~~~---~---~-~~~---------~----~~~~~~~~~~~~i~r~~l~~~L~~ 199 (476)
+++. . .+...+... . . ..+ . .....+-+..+.++...+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1110 0 000111100 0 0 000 0 000122234567889999999999
Q ss_pred HHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceE-EECceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeC
Q 011835 200 RCVESGVSYL-SSKVESITESTSGHRLVACEHDMI-VPCRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVEN 274 (476)
Q Consensus 200 ~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~-i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~ 274 (476)
.+.++|+++. +++|++++..++++..+.+.+|++ ++|+.||.|.|.+|..+++...........+..|..+.+++
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~ 238 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDN 238 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcc
Confidence 9999999999 999999999888777788888866 99999999999999766555433332233334466665554
No 89
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.35 E-value=1.4e-11 Score=127.06 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=96.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-----------CCcccchHHHHhcCc--chhhhhhcccceeeeC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-----------NNYGVWEDEFRDLGL--EGCIEHVWRDTVVYID 174 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-----------~~~G~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 174 (476)
|||+|||||+||+.+|..+++.|.+|+|+|+..... ..+|.+.+.++.+|- ..+..+..-.......
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 699999999999999999999999999999863211 123444555555542 1222222111122211
Q ss_pred CCCCEEeccCcceecHHHHHHHHHHHHHHC-CCeEEEEEEEEEEEc-CCceEEEEecCceEEECceEEEccCCCC
Q 011835 175 EDEPILIGRAYGRVSRHLLHEELLRRCVES-GVSYLSSKVESITES-TSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 175 ~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~i~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
...+.. ..+.+.+++..+...+.+.+++. |++++...|+++..+ ++.+.+|.+.+|..+.|+.||+|+|.+.
T Consensus 81 skgpAV-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAV-RATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcc-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 112211 12235789999999999999877 788887788888765 4457889999998999999999999996
No 90
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.35 E-value=1.3e-12 Score=119.49 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=79.2
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEe------cc
Q 011835 111 VVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI------GR 183 (476)
Q Consensus 111 vIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 183 (476)
+||||||+||++|..|.+.|++ |+|||+....+..|. ..-....+.. ..... ....++....... ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~---~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR---RYYSYTRLHS--PSFFS-SDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH---CH-TTTT-BS--SSCCT-GGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE---EeCCCCcccc--Ccccc-ccccCCcccccccccCCCCCC
Confidence 7999999999999999999999 999999876554432 1100001100 00000 0000000000000 00
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
+.....+..+.+.|.+.+++.+++++ +++|+++..++++ +.|++.++++++||.||+|+|..+.
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeeccCC
Confidence 11247788899999999999999999 9999999999884 9999999988999999999997663
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.34 E-value=2.4e-10 Score=115.83 Aligned_cols=209 Identities=17% Similarity=0.150 Sum_probs=126.9
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-----eEEECceEEEccCCCCCCccccccCCCc
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAASGKLLEYEVGGPK 259 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-----~~i~a~~vV~A~G~~S~~~~~~~~~~~~ 259 (476)
+.++-..|.-.....+.+.|.+++ .++|+++..+++ +++|.+.|. .+++|+.||.|+|.|+..+++.....+.
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~ 237 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQS 237 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCC
Confidence 467778888888999999999999 999999999988 888887763 3689999999999999776665532221
Q ss_pred --ccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCC----CCChHH
Q 011835 260 --VSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKD----GLPFDI 333 (476)
Q Consensus 260 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~ 333 (476)
.......|..+.++. .++....++.... . .....+++|..+.. .+|.|...-.. ....++
T Consensus 238 ~~~~vr~skGsHlVv~~-~~~~~~a~~~~~~-----------~-d~r~~f~iP~~~~~-liGTTD~~~~~~~~~~~~~~e 303 (532)
T COG0578 238 PHIGVRPSKGSHLVVDK-KFPINQAVINRCR-----------K-DGRIVFAIPYEGKT-LIGTTDTDYDGDPEDPRITEE 303 (532)
T ss_pred CCccceeccceEEEecc-cCCCCceEEeecC-----------C-CCceEEEecCCCCE-EeeccccccCCCcccCCCCHH
Confidence 235566777777765 4444444443322 1 23557889998765 77765322111 111233
Q ss_pred HHHHHHHHHH-Hc--CCcccceeEEEEEEeeCCCCC----CCCCCCeeEeccc--cCccCCcchHHHHHHHHhHHHHHHH
Q 011835 334 LKKKLMARLE-RL--GIQVLKTYEEEWSYIPVGGSL----PNTEQRNLAFGAA--ASMVHPATGYSVVRSLSEAPNYASA 404 (476)
Q Consensus 334 ~~~~l~~~~~-~~--~~~~~~~~~~~~~~~p~~~~~----~~~~~rv~liGDA--Ah~~~P~~G~G~~~Al~da~~la~~ 404 (476)
-.+.+.+... .+ .....++....++..|+.... ....-..++.-++ ++.++-++|.= +.-=..|....+.
T Consensus 304 Eidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGKl-TTyR~maE~a~d~ 382 (532)
T COG0578 304 EIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGKL-TTYRKMAEDALDA 382 (532)
T ss_pred HHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecchh-HHhHHHHHHHHHH
Confidence 3344444443 22 333446777778888874321 1223334444444 55555555542 3333334444555
Q ss_pred HHHHhc
Q 011835 405 IAYILK 410 (476)
Q Consensus 405 l~~~l~ 410 (476)
+.+.+.
T Consensus 383 v~~~lg 388 (532)
T COG0578 383 VCEKLG 388 (532)
T ss_pred HHHhcC
Confidence 555443
No 92
>PRK12831 putative oxidoreductase; Provisional
Probab=99.30 E-value=3.5e-12 Score=130.95 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=99.8
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLA 121 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~ 121 (476)
.-.|+||++-.|+. +|.....+++|.++..+.+..+...... . ....+. .....||+|||||||||+
T Consensus 88 ~~grvC~~~~~Ce~----~C~r~~~~~~v~I~~l~r~~~~~~~~~~------~-~~~~~~--~~~~~~V~IIG~GpAGl~ 154 (464)
T PRK12831 88 VCGRVCPQESQCEG----KCVLGIKGEPVAIGKLERFVADWARENG------I-DLSETE--EKKGKKVAVIGSGPAGLT 154 (464)
T ss_pred hhhccCCCCCChHH----HhcCCCCCCCeehhHHHHHHHHHHHHcC------C-CCCCCc--CCCCCEEEEECcCHHHHH
Confidence 34789999888998 9999888889999977776544211111 0 000111 235579999999999999
Q ss_pred HHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHH
Q 011835 122 LAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (476)
Q Consensus 122 ~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~ 201 (476)
+|+.|++.|++|+|+|+....+..+ .++.+...+....+.....+.+
T Consensus 155 aA~~l~~~G~~V~v~e~~~~~GG~l---------------------------------~~gip~~~l~~~~~~~~~~~~~ 201 (464)
T PRK12831 155 CAGDLAKMGYDVTIFEALHEPGGVL---------------------------------VYGIPEFRLPKETVVKKEIENI 201 (464)
T ss_pred HHHHHHhCCCeEEEEecCCCCCCee---------------------------------eecCCCccCCccHHHHHHHHHH
Confidence 9999999999999999865322111 0011111122333444446677
Q ss_pred HHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCCCcccc
Q 011835 202 VESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKLLEY 253 (476)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~~~~~~ 253 (476)
++.|++++ ++.+. ..+.+.+. ..+.+|.||+|+|++....+.+
T Consensus 202 ~~~gv~i~~~~~v~---------~~v~~~~~~~~~~~d~viiAtGa~~~~~l~i 246 (464)
T PRK12831 202 KKLGVKIETNVVVG---------KTVTIDELLEEEGFDAVFIGSGAGLPKFMGI 246 (464)
T ss_pred HHcCCEEEcCCEEC---------CcCCHHHHHhccCCCEEEEeCCCCCCCCCCC
Confidence 78899999 77552 11222232 2356999999999853333333
No 93
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.9e-11 Score=115.35 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=85.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
..+||+|||||||||+||+++++.|++ ++|+|+..+.... -.+. ... . ..+.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~-~~~~-~ve----------n--------------ypg~~ 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-TKTT-DVE----------N--------------YPGFP 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCcc-ccce-eec----------C--------------CCCCc
Confidence 358999999999999999999999999 7777775432100 0000 000 0 00111
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
+.+.-..|.+.+.+++...|+++....|..++..++ ...|.+.+++ ++|+.||+|+|....
T Consensus 56 -~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 56 -GGILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred -cCCchHHHHHHHHHHHhhcCeEEEEEEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCccc
Confidence 126778899999999999999999888888888776 7888888887 999999999997764
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.26 E-value=7.7e-11 Score=114.43 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=81.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
+||+||||||||+++|..|++.|++|+|||+..... .+-. ...+ ..++ +.+ ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~-~~~~-----------------~~~~-------~~~-~~ 53 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGG-QLTT-TTEV-----------------ENYP-------GFP-EG 53 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCc-ceee-cccc-----------------cccC-------CCC-CC
Confidence 599999999999999999999999999999865211 1000 0000 0000 000 01
Q ss_pred ecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+....+...+.+.+++.|++++.++|++++.+++ .+.|.+.++.++++|.||+|+|...
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~-~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDR-PFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCC-eeEEEeCCCCEEEeCEEEECCCCCc
Confidence 4455677888888888999988788999988765 5677777778899999999999765
No 95
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.25 E-value=3.6e-10 Score=104.98 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=88.9
Q ss_pred CceEEEccCCCCCCccccccCCCcccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCc-
Q 011835 236 CRLATVASGAASGKLLEYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSST- 314 (476)
Q Consensus 236 a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 314 (476)
|.++|+|||..|.-+..+. .........++|....-...+.+...-+++ ...++ +.+.+.+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil-------------~~~~p--il~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVIL-------------GKPGP--ILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEE-------------cCCCc--EEEEEcCCCc
Confidence 7899999999995444444 333334556777776433333333333333 22234 555555554
Q ss_pred -eEEEEeecccC-CCCCChHHHHHHHHHHH-HHcCCcc----cceeEE-EEEEeeCCCC--CCCCCCCeeEeccccCccC
Q 011835 315 -RVFFEETCLAS-KDGLPFDILKKKLMARL-ERLGIQV----LKTYEE-EWSYIPVGGS--LPNTEQRNLAFGAAASMVH 384 (476)
Q Consensus 315 -~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~~~~----~~~~~~-~~~~~p~~~~--~~~~~~rv~liGDAAh~~~ 384 (476)
|+.+... .. -+.....++++.+.+.+ +.+...+ .+.++. .....|.... .+...++++++|||+++.|
T Consensus 66 tR~Lvdvp--~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrH 143 (276)
T PF08491_consen 66 TRVLVDVP--GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRH 143 (276)
T ss_pred eEEEEEeC--CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcC
Confidence 4544432 22 12222345555555432 2221111 111111 1122233222 2344589999999999999
Q ss_pred CcchHHHHHHHHhHHHHHHHHHHH
Q 011835 385 PATGYSVVRSLSEAPNYASAIAYI 408 (476)
Q Consensus 385 P~~G~G~~~Al~da~~la~~l~~~ 408 (476)
|.+|+||+.|+.|+.+|++.|...
T Consensus 144 PLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 144 PLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred CccccchhhHHHHHHHHHHHHhhh
Confidence 999999999999999999999987
No 96
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.24 E-value=1.1e-10 Score=121.90 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=85.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
...+||+||||||||+++|.+|++.|++|+||++... ..+ .. ..+++. ..+.+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G--G~~---~~---~~~~~~-------------------~~~~~ 261 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG--GQV---LD---TMGIEN-------------------FISVP 261 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC--Cee---ec---cCcccc-------------------cCCCC
Confidence 3568999999999999999999999999999975321 111 00 000000 00011
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
......+.+.|.+.+.+.|++++ +++|+++...++ .+.|.+.+|.++.+|.||+|+|+.++
T Consensus 262 --~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~-~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 262 --ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG-LIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred --CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 24566788899999999999999 999999988765 67777888888999999999998763
No 97
>PLN02661 Putative thiazole synthesis
Probab=99.23 E-value=1.8e-10 Score=111.41 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=81.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEecc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
.++||+|||||++|+++|+.|++. |++|+|||+...... .|.- ...+...-+............+.++...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~g-g~l~~~~vv~~~a~e~LeElGV~fd~~d------ 163 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLG-GQLFSAMVVRKPAHLFLDELGVPYDEQE------ 163 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeC-cccccccccccHHHHHHHHcCCCcccCC------
Confidence 458999999999999999999986 899999999765432 1110 0001111111111111111111111110
Q ss_pred Cccee-cHHHHHHHHHHHHH-HCCCeEE-EEEEEEEEEcCCceEEEEec------C--------ceEEECceEEEccCCC
Q 011835 184 AYGRV-SRHLLHEELLRRCV-ESGVSYL-SSKVESITESTSGHRLVACE------H--------DMIVPCRLATVASGAA 246 (476)
Q Consensus 184 ~~~~i-~r~~l~~~L~~~~~-~~gv~i~-~~~v~~i~~~~~~~~~v~~~------~--------g~~i~a~~vV~A~G~~ 246 (476)
.+... +...+...|.+++. +.|++++ ++.|+++..+++.+.+|.+. + ...++|+.||+|||..
T Consensus 164 gy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 164 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred CeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 11112 33455667777664 4799999 99999999877756666531 1 1368999999999954
Q ss_pred C
Q 011835 247 S 247 (476)
Q Consensus 247 S 247 (476)
.
T Consensus 244 g 244 (357)
T PLN02661 244 G 244 (357)
T ss_pred C
Confidence 4
No 98
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.22 E-value=8.5e-12 Score=127.05 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc--c-c------chHHHHhcCcchhhhhhcccceeeeCCCCCE
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY--G-V------WEDEFRDLGLEGCIEHVWRDTVVYIDEDEPI 179 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~--G-~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (476)
|||||||||||++||+.+++.|.+|+|||+....+... | + +......-++ ...........-......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi---~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGI---FREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHH---HHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCH---HHHHHHHHhhhccccccc
Confidence 89999999999999999999999999999977543211 1 0 1000000011 111111111000000000
Q ss_pred EeccC-cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC---ceEEECceEEEccCCC
Q 011835 180 LIGRA-YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---DMIVPCRLATVASGAA 246 (476)
Q Consensus 180 ~~~~~-~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g~~i~a~~vV~A~G~~ 246 (476)
..+.. ...+++..+...|.+.+.+.|++++ ++.|+++..+++++..|.+.+ ..+++|+.||+|||-.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG 149 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0236777788888888888999999 999999999887677777764 4689999999999943
No 99
>PRK07233 hypothetical protein; Provisional
Probab=99.21 E-value=9.7e-09 Score=105.19 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.+.+.|.+.+++.|++|+ +++|++|+.++++...+ ..++.++++|.||.|.....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~-~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGV-EVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEE-EeCCceEECCEEEECCCHHH
Confidence 467778888888899999 99999999877643334 35667899999999998654
No 100
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.20 E-value=1.9e-11 Score=135.66 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=101.5
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLA 121 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~ 121 (476)
...||||++..|+. +|+....+++|.++..+.+..+...... . ..++.+ ....+|+|||||||||+
T Consensus 379 ~~grvCp~~~~Ce~----~C~~~~~~~pv~I~~ler~~~d~~~~~~------~--~~~~~~--~~~~kVaIIG~GPAGLs 444 (1006)
T PRK12775 379 ICGRVCPQETQCEA----QCIIAKKHESVGIGRLERFVGDNARAKP------V--KPPRFS--KKLGKVAICGSGPAGLA 444 (1006)
T ss_pred HhcCcCCCCCCHHH----hCcCCCCCCCeeecHHHHHHHHHHHHcC------C--CCCCCC--CCCCEEEEECCCHHHHH
Confidence 44899999889998 9999988899999988887554321111 0 111111 23579999999999999
Q ss_pred HHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHH
Q 011835 122 LAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (476)
Q Consensus 122 ~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~ 201 (476)
+|..|++.|++|+|||+....+.. ..++.+.....+. +.....+.+
T Consensus 445 aA~~La~~G~~VtV~E~~~~~GG~---------------------------------l~~gip~~rl~~e-~~~~~~~~l 490 (1006)
T PRK12775 445 AAADLVKYGVDVTVYEALHVVGGV---------------------------------LQYGIPSFRLPRD-IIDREVQRL 490 (1006)
T ss_pred HHHHHHHcCCcEEEEecCCCCcce---------------------------------eeccCCccCCCHH-HHHHHHHHH
Confidence 999999999999999986532211 0011111223333 445556778
Q ss_pred HHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCCCccccc
Q 011835 202 VESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
.+.||+++ ++.+ +. .+.+.+- ....+|.||+|+|++....++++
T Consensus 491 ~~~Gv~~~~~~~v-g~--------~~~~~~l~~~~~yDaViIATGa~~pr~l~Ip 536 (1006)
T PRK12775 491 VDIGVKIETNKVI-GK--------TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIP 536 (1006)
T ss_pred HHCCCEEEeCCcc-CC--------ccCHHHHhhccCCCEEEEecCCCCCCCCCCC
Confidence 88999998 6543 11 1111111 12458999999998754444444
No 101
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.20 E-value=1.6e-09 Score=101.35 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=50.3
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcC---------Cc----------eEEEEecCc--eEEECceEEEcc
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYLSSKVESITEST---------SG----------HRLVACEHD--MIVPCRLATVAS 243 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~---------~~----------~~~v~~~~g--~~i~a~~vV~A~ 243 (476)
.|+++.-.|...+++.+...|+.+.+.+|++++.+. ++ .+.|...|+ +.+++.++|.|.
T Consensus 237 EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 237 EGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAA 316 (509)
T ss_pred ccccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEecc
Confidence 356888889999999999999999988898887652 21 233444443 578999999999
Q ss_pred CCCCCC
Q 011835 244 GAASGK 249 (476)
Q Consensus 244 G~~S~~ 249 (476)
|++|..
T Consensus 317 Ga~s~Q 322 (509)
T KOG2853|consen 317 GAWSGQ 322 (509)
T ss_pred CccHHH
Confidence 999964
No 102
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.20 E-value=4.8e-10 Score=116.66 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc---hHHHHhcCcc-----------------
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---EDEFRDLGLE----------------- 159 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~---~~~l~~~~~~----------------- 159 (476)
+.++||||||+|+||++||+.+++.|.+|+||||......+ -|++ .......++.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 34689999999999999999999999999999997654321 1111 1111111110
Q ss_pred --h-hhhh---------hc-ccceeeeC-----CCC-C-EEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEE
Q 011835 160 --G-CIEH---------VW-RDTVVYID-----EDE-P-ILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITE 218 (476)
Q Consensus 160 --~-~~~~---------~~-~~~~~~~~-----~~~-~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~ 218 (476)
. .+.. .| ....+.+. .+. . ..+.+..+......+...|.+.+++.|++++ +++|+++..
T Consensus 139 ~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 139 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 218 (506)
T ss_pred CCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe
Confidence 0 0000 01 00001110 000 0 0000111112334578888898999999999 999999987
Q ss_pred cCCceEEEEe--cCc--eEEECceEEEccCCCCC
Q 011835 219 STSGHRLVAC--EHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 219 ~~~~~~~v~~--~~g--~~i~a~~vV~A~G~~S~ 248 (476)
++++++.|.+ .++ .++.++.||+|+|.++.
T Consensus 219 ~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 6654555544 343 36899999999998874
No 103
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.19 E-value=1.9e-10 Score=120.92 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=80.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
..|||+|||||||||++|..|++.|++|+|||+.. .+..+-. ...+ ..++ ..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~----------~~~i--------~~~p---------g~ 54 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITI----------TSEV--------VNYP---------GI 54 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEe----------cccc--------ccCC---------CC
Confidence 35899999999999999999999999999999853 1111000 0000 0000 01
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
..+....+.+.+.+.+.+.|+++++++|+.++.+++ ...|.+.++ ++.++.||+|+|++..
T Consensus 55 ~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~-~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 55 LNTTGPELMQEMRQQAQDFGVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred cCCCHHHHHHHHHHHHHHcCCEEeccEEEEEEecCC-EEEEEecCC-EEEEeEEEECCCCccC
Confidence 124556778888888888999988888999887655 556666665 5889999999998764
No 104
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.19 E-value=4.6e-10 Score=115.59 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=64.7
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cc--eEEECceEEEccCCCCCCccccccCC
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGKLLEYEVGG 257 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~~~~~~~~~~ 257 (476)
..+.++...+...|.+.+.+.|++++ +++|++++.++++.+.+.+. +| .+++||.||+|.|.+|..+.......
T Consensus 171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 33578999999999999999999999 99999999865434555432 23 36899999999999997655433211
Q ss_pred --CcccceeEEEEEEEeeC
Q 011835 258 --PKVSVQTAYGVEVEVEN 274 (476)
Q Consensus 258 --~~~~~~~~~g~~~~~~~ 274 (476)
......+..|..+..+.
T Consensus 251 ~~~~~~i~P~~Gq~l~l~~ 269 (483)
T TIGR01320 251 EVKGFAGFPVSGLFLRCGN 269 (483)
T ss_pred cCCCCceeeeeEEEEEeCC
Confidence 11233456677766553
No 105
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.19 E-value=2.3e-10 Score=119.39 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=83.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
...+||+||||||||++||..|++.|++|+||+.... ..+ . ...++. ...+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G--G~~---~---~~~~~~-------------------~~~~~~ 262 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG--GQV---K---DTVGIE-------------------NLISVP 262 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC--Ccc---c---cCcCcc-------------------cccccC
Confidence 4569999999999999999999999999999975321 110 0 000000 000111
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
......+.+.+.+.+.+.|++++ +++|+++..+++ .+.+.+.+|.++.+|.||+|+|+..
T Consensus 263 --~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~-~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 263 --YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDG-LIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred --CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC-eEEEEECCCCEEEeCEEEECCCCCc
Confidence 13456688888888888999999 899999987665 5677778888899999999999875
No 106
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.19 E-value=2.9e-10 Score=116.88 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=56.0
Q ss_pred ceecHHHHHHHHHHHHHH----CC--CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 186 GRVSRHLLHEELLRRCVE----SG--VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~----~g--v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
+.++...+...|.+.+.+ .| ++++ +++|++++.++++.+.|.+.+| +++||.||+|+|.+|..+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~ 278 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQ 278 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHH
Confidence 468999999999999988 77 7888 9999999987555778888777 59999999999999965544
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=3.6e-10 Score=115.67 Aligned_cols=139 Identities=16% Similarity=0.078 Sum_probs=87.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHH-HHhcCcchh----hhhhcccceee--------
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FRDLGLEGC----IEHVWRDTVVY-------- 172 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~-l~~~~~~~~----~~~~~~~~~~~-------- 172 (476)
...+|+||||||+||+||..|.+.|++|+|+|+....+..|-..... .+.+++... ....|......
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 34799999999999999999999999999999987665443221100 011111100 00111111100
Q ss_pred --eCCCCCE----EeccCcceecHHHHHHHHHHHHHHCCCe--EE-EEEEEEEEEcCCceEEEEecCc----eEEECceE
Q 011835 173 --IDEDEPI----LIGRAYGRVSRHLLHEELLRRCVESGVS--YL-SSKVESITESTSGHRLVACEHD----MIVPCRLA 239 (476)
Q Consensus 173 --~~~~~~~----~~~~~~~~i~r~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~~~~~v~~~~g----~~i~a~~v 239 (476)
++..... ...+. ...+..+.+.|.+.++..|+. +. +++|++++..++ .+.|.+.++ .+..+|.|
T Consensus 89 ~dfp~~~~~~~~~~~~~~--fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~-~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRR--YPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG-KWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred CCCCCCcccccccCcCCC--CCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC-eEEEEEEcCCCceEEEEcCEE
Confidence 0000000 00011 246678999999999999988 77 999999998765 677776532 24579999
Q ss_pred EEccCCCC
Q 011835 240 TVASGAAS 247 (476)
Q Consensus 240 V~A~G~~S 247 (476)
|+|+|.++
T Consensus 166 IvAtG~~~ 173 (461)
T PLN02172 166 VVCNGHYT 173 (461)
T ss_pred EEeccCCC
Confidence 99999765
No 108
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.18 E-value=4.5e-09 Score=107.19 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=82.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc--------hHHHHhc---C--c--chhhhh-
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW--------EDEFRDL---G--L--EGCIEH- 164 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~--------~~~l~~~---~--~--~~~~~~- 164 (476)
.++||||||+|.|||+||+.++ .|.+|+||||......+. |++ ...++.+ + . ...+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3589999999999999999985 799999999976543221 221 1111110 0 0 111110
Q ss_pred --------hc-ccceeeeCCC-CCEEecc----Ccc------eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCc
Q 011835 165 --------VW-RDTVVYIDED-EPILIGR----AYG------RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSG 222 (476)
Q Consensus 165 --------~~-~~~~~~~~~~-~~~~~~~----~~~------~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~ 222 (476)
.| .+..+.+... ....+.. ... ......+.+.|.+.+.+ .||+++ +++|+++..++++
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 01 0111111110 0011100 000 11234677788887764 599999 9999999876664
Q ss_pred eEEEE-ecCce--EEECceEEEccCCCCC
Q 011835 223 HRLVA-CEHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 223 ~~~v~-~~~g~--~i~a~~vV~A~G~~S~ 248 (476)
+++|. ..++. ++.|+.||+|+|..+.
T Consensus 162 v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 162 CIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 55543 23443 6899999999998764
No 109
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.17 E-value=3.1e-11 Score=131.51 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=99.2
Q ss_pred CCCccceeeecccCCCCccccccccc-cchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEE-DYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGL 120 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl 120 (476)
...|+||++..|+. +|+....+ ++|.++..+.+..+...... ....+... .....+|+|||||||||
T Consensus 377 ~~grvC~~~~~Ce~----~c~~~~~~~~~v~i~~l~r~~~d~~~~~~-------~~~~~~~~-~~~~~~V~IIGaGpAGl 444 (752)
T PRK12778 377 VCGRVCPQEKQCES----KCIHGKMGEEAVAIGYLERFVADYERESG-------NISVPEVA-EKNGKKVAVIGSGPAGL 444 (752)
T ss_pred HhcCcCCCcCchHH----hcccCCCCCCCcCHHHHHHHHHHHHHHhC-------CCCCCCCC-CCCCCEEEEECcCHHHH
Confidence 44899999989998 89988777 78888876665443211000 00111111 13457999999999999
Q ss_pred HHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHH
Q 011835 121 ALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRR 200 (476)
Q Consensus 121 ~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~ 200 (476)
++|..|++.|++|+|||+....+.. ..++.+...+... +.....+.
T Consensus 445 ~aA~~l~~~G~~V~v~e~~~~~GG~---------------------------------l~~gip~~rlp~~-~~~~~~~~ 490 (752)
T PRK12778 445 SFAGDLAKRGYDVTVFEALHEIGGV---------------------------------LKYGIPEFRLPKK-IVDVEIEN 490 (752)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCCe---------------------------------eeecCCCCCCCHH-HHHHHHHH
Confidence 9999999999999999985432211 0111111123333 33334566
Q ss_pred HHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 201 CVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
+.+.||+++ ++.+. ..|.+++.....+|.||+|+|++....+.++
T Consensus 491 l~~~gv~~~~~~~v~---------~~v~~~~l~~~~ydavvlAtGa~~~~~l~ip 536 (752)
T PRK12778 491 LKKLGVKFETDVIVG---------KTITIEELEEEGFKGIFIASGAGLPNFMNIP 536 (752)
T ss_pred HHHCCCEEECCCEEC---------CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCC
Confidence 777899999 76541 1233333344669999999998543433333
No 110
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.14 E-value=5.9e-11 Score=121.68 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=94.9
Q ss_pred CCccceeeecccCCCCccccccc----cccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVK----EEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPA 118 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~a 118 (476)
-.|+|+++..|+. +|.... .+++|.++..+.+.......... . .++.+......+|+|||||||
T Consensus 77 ~grvC~~~~~Ce~----~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~------~--~~~~~~~~~~~~V~IIG~G~a 144 (449)
T TIGR01316 77 CGRVCPQERQCEG----QCTVGKMFKDVGKPVSIGALERFVADWERQHGI------E--TEPEKAPSTHKKVAVIGAGPA 144 (449)
T ss_pred hccCCCCccchHh----hCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCC------C--cCCCCCCCCCCEEEEECcCHH
Confidence 3699999889997 888766 67888888777655432111100 0 001111134579999999999
Q ss_pred HHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHH
Q 011835 119 GLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELL 198 (476)
Q Consensus 119 Gl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~ 198 (476)
||++|..|++.|++|+|||+.......+ .++.+...++.. +.....
T Consensus 145 Gl~aA~~l~~~G~~V~vie~~~~~GG~l---------------------------------~~gip~~~~~~~-~~~~~~ 190 (449)
T TIGR01316 145 GLACASELAKAGHSVTVFEALHKPGGVV---------------------------------TYGIPEFRLPKE-IVVTEI 190 (449)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCCcEe---------------------------------eecCCCccCCHH-HHHHHH
Confidence 9999999999999999999865322110 011111123333 333445
Q ss_pred HHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCc
Q 011835 199 RRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (476)
Q Consensus 199 ~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~ 250 (476)
+.+.+.||+++ ++.+. ..+.+.+. ...+|.||+|+|++....
T Consensus 191 ~~l~~~gv~~~~~~~v~---------~~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 191 KTLKKLGVTFRMNFLVG---------KTATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred HHHHhCCcEEEeCCccC---------CcCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 56777899999 66441 12333332 246899999999854333
No 111
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.14 E-value=6.2e-11 Score=127.15 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=98.0
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLA 121 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~ 121 (476)
...||||++-.|+. +|++...+++|.++..+.+..+...... .....++.+ ....+|+|||||||||+
T Consensus 274 ~~grvCp~~~~Ce~----~C~~~~~~~~v~I~~l~r~~~d~~~~~~------~~~~~~~~~--~~~~~VaIIGaGpAGLs 341 (654)
T PRK12769 274 ITGRVCPQDRLCEG----ACTLRDEYGAVTIGNIERYISDQALAKG------WRPDLSQVT--KSDKRVAIIGAGPAGLA 341 (654)
T ss_pred HhcccCCCCCChHH----hccCCCCCCCeecCHHHHHHHHHHHHhC------CCCCCcccc--cCCCEEEEECCCHHHHH
Confidence 44799999889998 9999988899999988776554321111 000011111 24569999999999999
Q ss_pred HHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHH
Q 011835 122 LAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (476)
Q Consensus 122 ~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~ 201 (476)
+|..|++.|++|+|||+....+... .++.+...+.+..+. ...+.+
T Consensus 342 aA~~L~~~G~~V~V~E~~~~~GG~l---------------------------------~~gip~~~l~~~~~~-~~~~~~ 387 (654)
T PRK12769 342 CADVLARNGVAVTVYDRHPEIGGLL---------------------------------TFGIPAFKLDKSLLA-RRREIF 387 (654)
T ss_pred HHHHHHHCCCeEEEEecCCCCCcee---------------------------------eecCCCccCCHHHHH-HHHHHH
Confidence 9999999999999999865322110 011111123444333 335667
Q ss_pred HHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
++.|++++ ++.|.. .+.+.+ ....+|.||+|+|++...
T Consensus 388 ~~~Gv~~~~~~~v~~---------~i~~~~-~~~~~DavilAtGa~~~~ 426 (654)
T PRK12769 388 SAMGIEFELNCEVGK---------DISLES-LLEDYDAVFVGVGTYRSM 426 (654)
T ss_pred HHCCeEEECCCEeCC---------cCCHHH-HHhcCCEEEEeCCCCCCC
Confidence 77899998 776521 111111 113689999999987643
No 112
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.14 E-value=2e-10 Score=124.95 Aligned_cols=150 Identities=18% Similarity=0.131 Sum_probs=95.0
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
..|||++ .|+. +|.....+++|.+++.+.+..+...... ....+.........+|+||||||||+++
T Consensus 488 cGrVCph--~Ce~----~C~R~~~d~pV~I~~Lkr~a~d~~~~~~-------~~~~~~~~~~~tgKkVaIIGgGPAGLsA 554 (1019)
T PRK09853 488 TGHICDH--QCQY----NCTRLDYDEAVNIRELKKVALEKGWDEY-------KQRWHKPAGIGSRKKVAVIGAGPAGLAA 554 (1019)
T ss_pred hhCcCCc--hhHH----HhcCCCCCCCeeccHHHHHHHhhHHHhc-------ccccCCCCccCCCCcEEEECCCHHHHHH
Confidence 3689988 4887 8998888899999987776543211100 0011001011345699999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|+.|++.|++|+|+|+....+ |.. ....|...+.+..+.. ..+.+.
T Consensus 555 A~~Lar~G~~VtV~Ek~~~~G---G~l------------------------------r~~IP~~Rlp~evL~~-die~l~ 600 (1019)
T PRK09853 555 AYFLARAGHPVTVFEREENAG---GVV------------------------------KNIIPQFRIPAELIQH-DIEFVK 600 (1019)
T ss_pred HHHHHHcCCeEEEEecccccC---cce------------------------------eeecccccccHHHHHH-HHHHHH
Confidence 999999999999999866422 110 0001111233333333 346677
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCc
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~ 250 (476)
+.||+++ ++.+ ++.. .+.....+|.||+|+|++....
T Consensus 601 ~~GVe~~~gt~V-di~l----------e~L~~~gYDaVILATGA~~~~~ 638 (1019)
T PRK09853 601 AHGVKFEFGCSP-DLTV----------EQLKNEGYDYVVVAIGADKNGG 638 (1019)
T ss_pred HcCCEEEeCcee-EEEh----------hhheeccCCEEEECcCCCCCCC
Confidence 7899999 7766 2221 2223456899999999886433
No 113
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.14 E-value=6.8e-11 Score=119.52 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=108.1
Q ss_pred ccccCCCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCC
Q 011835 37 AVDCNHSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCG 116 (476)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG 116 (476)
+.......|+||++-.|++ +|++..++.+++++..+........... .....++.+ .....|+|||+|
T Consensus 65 n~~p~~~gRvcp~~~~ceg----~cv~~~~~~~v~i~~le~~i~d~~~~~g------~i~~~~~~~--~tg~~VaviGaG 132 (457)
T COG0493 65 NNLPAITGRVCPLGNLCEG----ACVLGIEELPVNIGALERAIGDKADREG------WIPGELPGS--RTGKKVAVIGAG 132 (457)
T ss_pred CCCccccCccCCCCCceee----eeeeccCCCchhhhhHHHHHhhHHHHhC------CCCCCCCCC--CCCCEEEEECCC
Confidence 3344566999999999999 9999988999999977776554332211 111111111 233689999999
Q ss_pred HHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHH
Q 011835 117 PAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEE 196 (476)
Q Consensus 117 ~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~ 196 (476)
||||++|..|++.|++|+++|+....+. .+.++.|...+... +.+.
T Consensus 133 PAGl~~a~~L~~~G~~Vtv~e~~~~~GG---------------------------------ll~yGIP~~kl~k~-i~d~ 178 (457)
T COG0493 133 PAGLAAADDLSRAGHDVTVFERVALDGG---------------------------------LLLYGIPDFKLPKD-ILDR 178 (457)
T ss_pred chHhhhHHHHHhCCCeEEEeCCcCCCce---------------------------------eEEecCchhhccch-HHHH
Confidence 9999999999999999999998764332 12223232233333 3344
Q ss_pred HHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcccccc
Q 011835 197 LLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEV 255 (476)
Q Consensus 197 L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~ 255 (476)
.++.+++.|++|+ ++++- ..+++++= .-+.|+|++|+|..-.+.++++.
T Consensus 179 ~i~~l~~~Gv~~~~~~~vG---------~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g 228 (457)
T COG0493 179 RLELLERSGVEFKLNVRVG---------RDITLEEL-LKEYDAVFLATGAGKPRPLDIPG 228 (457)
T ss_pred HHHHHHHcCeEEEEcceEC---------CcCCHHHH-HHhhCEEEEeccccCCCCCCCCC
Confidence 4777888999999 88773 12222211 12349999999988876666553
No 114
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.13 E-value=1.5e-10 Score=126.36 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=93.1
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
..|||++ .|+. +|.....+++|.+++.+.+..+...... ..............+|+|||||||||+|
T Consensus 486 cGrVC~h--~Ce~----~C~R~~~d~pV~I~~Lkr~a~d~~~~~~-------~~~~~~~~~~~~~kkVaIIGGGPAGLSA 552 (1012)
T TIGR03315 486 TGTICDH--QCQY----KCTRLDYDESVNIREMKKVAAEKGYDEY-------KTRWHKPQGKSSAHKVAVIGAGPAGLSA 552 (1012)
T ss_pred hhCcCCc--chHH----HhcCCCCCCCCcccHHHHHHHhhHHHhc-------CccCCCCCCCCCCCcEEEECCCHHHHHH
Confidence 3689988 4887 9998888899999987776544211110 0011000111345799999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|+.|++.|++|+|||+....+... ....+...+.+..+. ...+.+.
T Consensus 553 A~~LAr~G~~VTV~Ek~~~lGG~l---------------------------------~~~IP~~rlp~e~l~-~~ie~l~ 598 (1012)
T TIGR03315 553 GYFLARAGHPVTVFEKKEKPGGVV---------------------------------KNIIPEFRISAESIQ-KDIELVK 598 (1012)
T ss_pred HHHHHHCCCeEEEEecccccCcee---------------------------------eecccccCCCHHHHH-HHHHHHH
Confidence 999999999999999876422110 000111123333333 3345667
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCc
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~ 250 (476)
+.||+++ +... . +.+.+.....+|.||+|+|++....
T Consensus 599 ~~GVe~~~g~~~-d----------~~ve~l~~~gYDaVIIATGA~~~~~ 636 (1012)
T TIGR03315 599 FHGVEFKYGCSP-D----------LTVAELKNQGYKYVILAIGAWKHGP 636 (1012)
T ss_pred hcCcEEEEeccc-c----------eEhhhhhcccccEEEECCCCCCCCC
Confidence 7899998 6321 0 1112223356899999999875433
No 115
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.13 E-value=7.1e-10 Score=113.05 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cce--EEECceEEEccCCCCC
Q 011835 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 189 ~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g~--~i~a~~vV~A~G~~S~ 248 (476)
....+...|.+.+++.|++|+ +++++++..+++++++|... +|+ +++|+.||+|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 457789999999999999999 99999999988777777766 343 6789999999999885
No 116
>PLN02612 phytoene desaturase
Probab=99.13 E-value=5.1e-08 Score=102.74 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecCceEEECceEEEccCCCC
Q 011835 193 LHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+.+.|.+.+++.|++|+ +++|++|+.++++ .+.|.+.+|+++.+|.||.|+....
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI 366 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH
Confidence 44566666667899999 9999999986654 4557778888899999999987543
No 117
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.09 E-value=1.7e-09 Score=113.45 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=87.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC-C----cccc---------hHHHHhc-----Cc--chhhh
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-N----YGVW---------EDEFRDL-----GL--EGCIE 163 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~-~----~G~~---------~~~l~~~-----~~--~~~~~ 163 (476)
+.++||+|||+|.|||+||+.+++.|.+|+|+||...... . -|++ ...+.++ ++ ...+.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 3468999999999999999999999999999999764321 1 1111 1111111 11 11111
Q ss_pred h---------hc-ccceeeeCC--CCCEEec----cCc-------ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc
Q 011835 164 H---------VW-RDTVVYIDE--DEPILIG----RAY-------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITES 219 (476)
Q Consensus 164 ~---------~~-~~~~~~~~~--~~~~~~~----~~~-------~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~ 219 (476)
. .| ....+.++. ....... ... +......+...|.+.+++.||+++ ++.|+++..+
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~ 173 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEc
Confidence 0 01 111111111 0111000 000 011345688889999988999999 9999999876
Q ss_pred CC-ceEEEEec-------Cc-eEEECceEEEccCCCCCC
Q 011835 220 TS-GHRLVACE-------HD-MIVPCRLATVASGAASGK 249 (476)
Q Consensus 220 ~~-~~~~v~~~-------~g-~~i~a~~vV~A~G~~S~~ 249 (476)
++ .+.+|.+. ++ ..+.|+.||+|||.++..
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 54 35555442 33 468999999999998853
No 118
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.09 E-value=1.5e-10 Score=119.19 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=98.0
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
-.|+||++-.|+. +|+....+++|.++..+.+..+...... .....++.+ ....+|+||||||+|+++
T Consensus 89 ~grvC~~~~~Ce~----~C~~~~~~~~v~i~~l~r~~~~~~~~~~------~~~~~~~~~--~~~~~V~IIG~GpaGl~a 156 (467)
T TIGR01318 89 CGRVCPQDRLCEG----ACTLNDEFGAVTIGNLERYITDTALAMG------WRPDLSHVV--PTGKRVAVIGAGPAGLAC 156 (467)
T ss_pred hcccCCCCCChHH----hCcCCCCCCCccHHHHHHHHHHHHHHhC------CCCCCCCcC--CCCCeEEEECCCHHHHHH
Confidence 3699998888998 9999888889999977765543221110 001111111 245699999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|..|++.|++|+|+|+..... |. ..++.+...+.+. +.....+.+.
T Consensus 157 A~~l~~~G~~V~i~e~~~~~g---G~------------------------------l~~gip~~~~~~~-~~~~~~~~~~ 202 (467)
T TIGR01318 157 ADILARAGVQVVVFDRHPEIG---GL------------------------------LTFGIPSFKLDKA-VLSRRREIFT 202 (467)
T ss_pred HHHHHHcCCeEEEEecCCCCC---ce------------------------------eeecCccccCCHH-HHHHHHHHHH
Confidence 999999999999999876322 10 0011111123343 3344467778
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCc
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~ 250 (476)
+.|++++ ++.|.. .+.+.+ ....+|.||+|+|+.....
T Consensus 203 ~~Gv~~~~~~~v~~---------~~~~~~-~~~~~D~vilAtGa~~~~~ 241 (467)
T TIGR01318 203 AMGIEFHLNCEVGR---------DISLDD-LLEDYDAVFLGVGTYRSMR 241 (467)
T ss_pred HCCCEEECCCEeCC---------ccCHHH-HHhcCCEEEEEeCCCCCCc
Confidence 8999999 877621 011111 1246899999999887543
No 119
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.08 E-value=1.4e-09 Score=112.21 Aligned_cols=141 Identities=21% Similarity=0.306 Sum_probs=86.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC----cccc---------hHHHHhc-----Cc--chhhhh---
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN----YGVW---------EDEFRDL-----GL--EGCIEH--- 164 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~----~G~~---------~~~l~~~-----~~--~~~~~~--- 164 (476)
+||+|||+|+|||+||+.|++.|.+|+|+||.....+. .|+. ...+.++ ++ ...+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 69999999999999999999999999999997543221 1221 0111110 11 111110
Q ss_pred ------hc-ccceeeeCCCCCEEeccCcc------eecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc
Q 011835 165 ------VW-RDTVVYIDEDEPILIGRAYG------RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD 231 (476)
Q Consensus 165 ------~~-~~~~~~~~~~~~~~~~~~~~------~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g 231 (476)
.| ....+.+.... ..-+..+. ......+.+.|.+.+++.|++++...++++..+++++++|.. ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~-~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNE-LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCC-CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CC
Confidence 01 11111111100 00000110 112356888899999999999994488888766554556665 56
Q ss_pred eEEECceEEEccCCCCCCc
Q 011835 232 MIVPCRLATVASGAASGKL 250 (476)
Q Consensus 232 ~~i~a~~vV~A~G~~S~~~ 250 (476)
..+.++.||+|||.++..+
T Consensus 160 ~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 160 ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEeCeEEECCCcCcCCC
Confidence 6799999999999999654
No 120
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.08 E-value=3.9e-10 Score=116.17 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
..|+|+++..|+. .|+......++.+...+.+...... .....++.+......+|+||||||||+++
T Consensus 89 ~g~vc~~~~~C~~----~C~~~~~~~~v~i~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~VvIIGgGpaGl~a 155 (457)
T PRK11749 89 CGRVCPQERLCEG----ACVRGKKGEPVAIGRLERYITDWAM---------ETGWVLFKRAPKTGKKVAVIGAGPAGLTA 155 (457)
T ss_pred hcCcCCCccCHHH----HhcCCCCCCCcchHHHHHHHHHHHH---------hcCCCCCCCCccCCCcEEEECCCHHHHHH
Confidence 4789999999987 8887655555555543332211100 00001011111345799999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|..|++.|++|+|+|+........ .++.+...... .+...+.+.+.
T Consensus 156 A~~l~~~g~~V~lie~~~~~gG~l---------------------------------~~gip~~~~~~-~~~~~~~~~l~ 201 (457)
T PRK11749 156 AHRLARKGYDVTIFEARDKAGGLL---------------------------------RYGIPEFRLPK-DIVDREVERLL 201 (457)
T ss_pred HHHHHhCCCeEEEEccCCCCCcEe---------------------------------eccCCCccCCH-HHHHHHHHHHH
Confidence 999999999999999876332110 00000011222 34455567777
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
+.|++++ ++.+.. .+.+.+.. +.+|.||+|+|++...
T Consensus 202 ~~gv~~~~~~~v~~---------~v~~~~~~-~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 202 KLGVEIRTNTEVGR---------DITLDELR-AGYDAVFIGTGAGLPR 239 (457)
T ss_pred HcCCEEEeCCEECC---------ccCHHHHH-hhCCEEEEccCCCCCC
Confidence 8899998 666521 12222222 6799999999986433
No 121
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.08 E-value=3.4e-10 Score=116.22 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC---ccc-chHHHHhc-CcchhhhhhcccceeeeCCCCCEEe
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGV-WEDEFRDL-GLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~---~G~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
+|||+||||||||+++|+.|++.|++|+|+|+.. .+.. .|. ..+.+-.. .+...+.. ........ ......+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~-~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTV-GKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCC-CCCCcCH
Confidence 4899999999999999999999999999999853 2222 121 11111100 00000000 00000000 0000000
Q ss_pred ccCccee--cHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 182 GRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 182 ~~~~~~i--~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..-.... ....+.+.+.+.+++.||+++..++..++.+ .+.+. .+|.++++|.||+|||+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~---~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN---TVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC---EEEEe-cCCeEEEcCEEEEecCCcC
Confidence 0000000 0123455566667788999996677766542 33443 4567899999999999765
No 122
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.07 E-value=1.8e-09 Score=109.08 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=83.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c----------cchHHHHhcCc-chhhh---hhc--cccee
Q 011835 111 VVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G----------VWEDEFRDLGL-EGCIE---HVW--RDTVV 171 (476)
Q Consensus 111 vIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G----------~~~~~l~~~~~-~~~~~---~~~--~~~~~ 171 (476)
+|||||+||+++|+.|++.|++|+|+||....+... | .........+- ...+. ..+ .+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999976544221 0 01111111111 00000 000 00000
Q ss_pred eeCC-CCCEEe---ccCc-ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCC
Q 011835 172 YIDE-DEPILI---GRAY-GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (476)
Q Consensus 172 ~~~~-~~~~~~---~~~~-~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~ 245 (476)
++.. +-.... +..+ ..-....+.+.|.+.+++.|++++ +++|+++..+++ .+.|.+ ++.++.+|.||+|+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDN-GFGVET-SGGEYEADKVILATGG 158 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-eEEEEE-CCcEEEcCEEEECCCC
Confidence 1110 100000 1111 012346788889999999999999 999999987665 566666 4567999999999999
Q ss_pred CCC
Q 011835 246 ASG 248 (476)
Q Consensus 246 ~S~ 248 (476)
+|.
T Consensus 159 ~s~ 161 (400)
T TIGR00275 159 LSY 161 (400)
T ss_pred ccc
Confidence 874
No 123
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.07 E-value=2.1e-09 Score=110.94 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=75.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHHHhc-CcchhhhhhcccceeeeCCCCCEE
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFRDL-GLEGCIEHVWRDTVVYIDEDEPIL 180 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
.+|||+||||||+|+++|..|++.|++|+|||+...++..| | ++.+.+-.. .+...+.. .....+... ..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~-~~~~g~~~~-~~--- 77 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKA-LAEHGIVFG-EP--- 77 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhh-hhhcCcccC-CC---
Confidence 35899999999999999999999999999999865444322 2 222221110 00000000 000000000 00
Q ss_pred eccCccee-c-H----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 181 IGRAYGRV-S-R----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 181 ~~~~~~~i-~-r----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
..++..+ . + ..+...+...+++.||+++...+..++ ++ .+.|...+| .++++|.||+|||+...
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~-~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 78 -KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GN-TLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 0011111 1 1 122333445567789999955555443 22 566666566 47899999999997653
No 124
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.07 E-value=1.7e-10 Score=123.26 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=99.9
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLA 121 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~ 121 (476)
...||||++-.|+. +|++...+++|.++..+.+..+...+.. .....++.+ ....+|+||||||+||+
T Consensus 257 ~~grvCp~~~~Ce~----~C~~~~~~~~v~i~~l~r~~~d~~~~~~------~~~~~~~~~--~~~kkVaIIG~GpaGl~ 324 (639)
T PRK12809 257 ICGRVCPQDRLCEG----ACTLKDHSGAVSIGNLERYITDTALAMG------WRPDVSKVV--PRSEKVAVIGAGPAGLG 324 (639)
T ss_pred hhcccCCCCCChHH----hccCCCcCCCcChhHHHHHHHHHHHHhC------CCCCCCccc--CCCCEEEEECcCHHHHH
Confidence 45899999889998 9999888889999988776554322111 000111111 23568999999999999
Q ss_pred HHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHH
Q 011835 122 LAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (476)
Q Consensus 122 ~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~ 201 (476)
+|..|++.|++|+|+|+....+.. ..++.+...+++..+. ...+.+
T Consensus 325 aA~~L~~~G~~Vtv~e~~~~~GG~---------------------------------l~~gip~~~l~~~~~~-~~~~~~ 370 (639)
T PRK12809 325 CADILARAGVQVDVFDRHPEIGGM---------------------------------LTFGIPPFKLDKTVLS-QRREIF 370 (639)
T ss_pred HHHHHHHcCCcEEEEeCCCCCCCe---------------------------------eeccCCcccCCHHHHH-HHHHHH
Confidence 999999999999999987643211 0111111224444333 335667
Q ss_pred HHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
.+.|++++ ++.+.. .+.+.+ ....+|.||+|+|+......
T Consensus 371 ~~~Gv~~~~~~~v~~---------~~~~~~-l~~~~DaV~latGa~~~~~~ 411 (639)
T PRK12809 371 TAMGIDFHLNCEIGR---------DITFSD-LTSEYDAVFIGVGTYGMMRA 411 (639)
T ss_pred HHCCeEEEcCCccCC---------cCCHHH-HHhcCCEEEEeCCCCCCCCC
Confidence 78899999 876621 111111 12458999999998764433
No 125
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.07 E-value=8.6e-08 Score=99.82 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..+.+.|.+.+++.|++|+ +++|++|..++++...|.+.+|+++.+|.||.|.|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 5688889999999999999 99999998877767888898898899999999999765
No 126
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=1.7e-09 Score=113.88 Aligned_cols=143 Identities=22% Similarity=0.230 Sum_probs=86.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccch---------H----HHHhc-----Cc--ch
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVWE---------D----EFRDL-----GL--EG 160 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~~---------~----~l~~~-----~~--~~ 160 (476)
..+||||||+|.|||+||+.+++.|.+|+|+||......+ -|++. + ...++ ++ ..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 4589999999999999999999999999999997543221 11110 0 00000 01 11
Q ss_pred hhhh---------hc-ccceeeeCC--CCCEEe---c-cCcce------ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEE
Q 011835 161 CIEH---------VW-RDTVVYIDE--DEPILI---G-RAYGR------VSRHLLHEELLRRCVESGVSYL-SSKVESIT 217 (476)
Q Consensus 161 ~~~~---------~~-~~~~~~~~~--~~~~~~---~-~~~~~------i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~ 217 (476)
.+.. .| ....+.++. ...... + ..+.. -....+...|.+.+.+.||+++ ++.++++.
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li 163 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLV 163 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEE
Confidence 1110 01 111122211 000000 0 00101 1234577788888888899999 99999999
Q ss_pred EcCCceEEEEec---Cc--eEEECceEEEccCCCCC
Q 011835 218 ESTSGHRLVACE---HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 218 ~~~~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~ 248 (476)
.+++.+++|... ++ ..+.|+.||+|||..+.
T Consensus 164 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 164 TDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred EECCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence 876656666654 33 36789999999998874
No 127
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.06 E-value=1.9e-09 Score=111.92 Aligned_cols=142 Identities=21% Similarity=0.302 Sum_probs=85.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc---------hHHHHhc-----Cc--chhhhh-
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW---------EDEFRDL-----GL--EGCIEH- 164 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~---------~~~l~~~-----~~--~~~~~~- 164 (476)
++||+|||+|+|||+||+.+++.|. |+||||......+. |++ ...+.++ ++ ...+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 99999975432111 111 0111110 11 111110
Q ss_pred --------hc-ccceeeeCCC--CCEEe----ccCcc------eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCC
Q 011835 165 --------VW-RDTVVYIDED--EPILI----GRAYG------RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTS 221 (476)
Q Consensus 165 --------~~-~~~~~~~~~~--~~~~~----~~~~~------~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~ 221 (476)
.| ....+.+... ..... +..+. ......+...|.+.+++ .||+++ ++.|+++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 01 1111111110 00000 01110 11346788889998887 699999 999999987665
Q ss_pred ceEEEEecC-c--eEEECceEEEccCCCCCC
Q 011835 222 GHRLVACEH-D--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 222 ~~~~v~~~~-g--~~i~a~~vV~A~G~~S~~ 249 (476)
.+.+|.+.+ + ..+.++.||+|||.++..
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 455555543 2 468999999999999964
No 128
>PRK06116 glutathione reductase; Validated
Probab=99.06 E-value=7.4e-10 Score=113.96 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=71.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Cccc-chHHHHhc-CcchhhhhhcccceeeeCCCCCEE
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGV-WEDEFRDL-GLEGCIEHVWRDTVVYIDEDEPIL 180 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
.+|||+||||||||+++|+.|++.|++|+|||+.. .+. +.|. ..+.+-.. .+...+........+.. ......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDV-TENKFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCC-CCCCcC
Confidence 35899999999999999999999999999999853 221 1121 11111100 00000000000000000 000000
Q ss_pred eccCccee--cHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 181 IGRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 181 ~~~~~~~i--~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+..-.... ....+.+.+.+.+.+.||+++...++.++. . .|.+ +|+++++|.||+|||+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~---~v~~-~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--H---TVEV-NGERYTADHILIATGGRP 143 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--C---EEEE-CCEEEEeCEEEEecCCCC
Confidence 00000000 012233445555677899999556665542 2 3334 677899999999999765
No 129
>PRK07121 hypothetical protein; Validated
Probab=99.05 E-value=1.9e-09 Score=112.04 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC-ceEEEEecC-c--eEEEC-ceEEEccCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACEH-D--MIVPC-RLATVASGAASG 248 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~v~~~~-g--~~i~a-~~vV~A~G~~S~ 248 (476)
...+...|.+.+++.|++++ +++|+++..+++ .+++|...+ + ..+++ +.||+|+|.++.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 45688889999999999999 999999988643 466665543 2 36789 999999998874
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.05 E-value=4.3e-09 Score=111.74 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=86.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc-----------hHHHHhc-----Cc--chhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW-----------EDEFRDL-----GL--EGCI 162 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~-----------~~~l~~~-----~~--~~~~ 162 (476)
.++||+|||||.|||+||+.+++.|.+|+|+||......+ .|+. ...+.++ ++ ...+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4689999999999999999999999999999997643321 1111 0011111 11 1111
Q ss_pred hh---------hc-ccceeeeC--CCCCEE---ecc---------Cccee------cHHHHHHHHHHHHHHCCCeEE-EE
Q 011835 163 EH---------VW-RDTVVYID--EDEPIL---IGR---------AYGRV------SRHLLHEELLRRCVESGVSYL-SS 211 (476)
Q Consensus 163 ~~---------~~-~~~~~~~~--~~~~~~---~~~---------~~~~i------~r~~l~~~L~~~~~~~gv~i~-~~ 211 (476)
.. .| ....+.+. ...... ++. ....+ ....+...|.+.+++.||+++ ++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 10 01 11111111 000000 000 00000 235788889999988999999 99
Q ss_pred EEEEEEE-cCCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 212 KVESITE-STSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 212 ~v~~i~~-~~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
.++++.. +++.+.+|.. .+| ..+.|+.||+|||..+..
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999987 4444555653 345 367899999999988753
No 131
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.05 E-value=2.6e-09 Score=110.29 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHHHhcCcchhhhhhcccceeeeCCCCCEE
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPIL 180 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
+..|||+||||||+|+++|+.|++.|++|+|||+....+..| | +....+..... .+ ..+.....+.......
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~--~~-~~~~~~~~~~~~~~~~- 78 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVL--RL-IGFNQNPLYSSYRVKL- 78 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHH--HH-HHHhhhhhhcccCCcC-
Confidence 456999999999999999999999999999999865444322 2 22221111000 00 0000000000000000
Q ss_pred eccCcce-ecH-----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCce--EEECceEEEccCCCC
Q 011835 181 IGRAYGR-VSR-----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAAS 247 (476)
Q Consensus 181 ~~~~~~~-i~r-----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~--~i~a~~vV~A~G~~S 247 (476)
..++.. +.+ ..+.+.+.+.+.+.||+++..++..++. + .+.|...+|. ++++|.||+|||+..
T Consensus 79 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~-~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 79 -RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--H-TVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred -ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--C-EEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 001110 111 1233445566778899999555655532 2 4666666663 789999999999765
No 132
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.05 E-value=1.5e-09 Score=112.35 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=77.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHHHhcCcchhhhhhcccceeeeCCCCCEEe
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
..|||+||||||||+++|..|++.|++|+|||+. .++..| | +..+.+-... ..+.........-..... .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a--~~~~~~~~~~~~g~~~~~---~ 76 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSA--EVFQTAKKASPFGISVSG---P 76 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHH--HHHHHHHHHHhcCccCCC---C
Confidence 3589999999999999999999999999999986 333222 2 2222111100 000000000000000000 0
Q ss_pred ccCccee--cH----HHHHHHHHHHHHHCCCeEEEEEEEEEEEc----CCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 182 GRAYGRV--SR----HLLHEELLRRCVESGVSYLSSKVESITES----TSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 182 ~~~~~~i--~r----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~----~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
...+..+ .+ ..+...+.+.+++.||+++...++.++.+ .++.+.|.+.+| .++.+|.||+|||+...
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 77 ALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 0011101 11 12333344556778999996677777654 122566777676 57999999999998663
No 133
>PRK14694 putative mercuric reductase; Provisional
Probab=99.05 E-value=1.9e-09 Score=111.34 Aligned_cols=131 Identities=23% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHHHhcCcchhhhhhcccceeeeCCCCCE
Q 011835 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPI 179 (476)
Q Consensus 104 ~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (476)
++..|||+||||||||+++|..|++.|++|+|||+.. .+..| | ++...+.... .+........ +..+ .
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a---~~~~~~~~~~--~~~g--~ 74 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAA---HIAHLRRESP--FDDG--L 74 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHH---HHHHHHhhcc--ccCC--c
Confidence 3567999999999999999999999999999999863 22222 1 1111110000 0000000000 0000 0
Q ss_pred EeccCcceecHHHHH-------HH-----HHHHHHH-CCCeEEEEEEEEEEEcCCceEEEEecCc--eEEECceEEEccC
Q 011835 180 LIGRAYGRVSRHLLH-------EE-----LLRRCVE-SGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASG 244 (476)
Q Consensus 180 ~~~~~~~~i~r~~l~-------~~-----L~~~~~~-~gv~i~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G 244 (476)
.... ..++...+. .. ....+.+ .+|+++..+++.++.+ .+.|.+.+| .++++|.||+|||
T Consensus 75 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~---~~~V~~~~g~~~~~~~d~lViATG 149 (468)
T PRK14694 75 SAQA--PVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER---TLTVTLNDGGEQTVHFDRAFIGTG 149 (468)
T ss_pred ccCC--CccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC---EEEEEecCCCeEEEECCEEEEeCC
Confidence 0000 012222221 11 1122333 3899996678888543 467777776 4799999999999
Q ss_pred CCC
Q 011835 245 AAS 247 (476)
Q Consensus 245 ~~S 247 (476)
+..
T Consensus 150 s~p 152 (468)
T PRK14694 150 ARP 152 (468)
T ss_pred CCC
Confidence 765
No 134
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.05 E-value=3.1e-09 Score=109.07 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=84.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCCCc----c-c---chHHHHhcCcc--------------------
Q 011835 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNY----G-V---WEDEFRDLGLE-------------------- 159 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~----G-~---~~~~l~~~~~~-------------------- 159 (476)
||||||+|+||++||+.|+++| .+|+||||......+. | + .....+..++.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 9999999976543221 1 1 01111111110
Q ss_pred hhhhh---------hc-c-cceeeeC-----CCCC--EEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC
Q 011835 160 GCIEH---------VW-R-DTVVYID-----EDEP--ILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST 220 (476)
Q Consensus 160 ~~~~~---------~~-~-~~~~~~~-----~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~ 220 (476)
..+.. .| . ...+... .+.. .......+......+.+.|.+.+++.|++++ +++|+++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 00000 01 0 0000000 0000 0000001113345688889999999999999 99999999864
Q ss_pred C-ceEEEEec--Cce--EEECceEEEccCCCCC
Q 011835 221 S-GHRLVACE--HDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 221 ~-~~~~v~~~--~g~--~i~a~~vV~A~G~~S~ 248 (476)
+ .+++|.+. +++ .+.++.||+|+|.++.
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4 35555443 343 4789999999999886
No 135
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.05 E-value=3.2e-10 Score=121.85 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=59.0
Q ss_pred CccceeeecccCCCCccccccccccchhcCCcceeeeccccCc----ch---hhhhhhccCCCCCCCCCCcccEEEECCC
Q 011835 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNK----SM---DKQSKLADKLPPISIGNGILDLVVIGCG 116 (476)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~dVvIIGgG 116 (476)
.|||+ .|+. +|+.. .+++|.++..+....+...+- .. ...........+.+...+..+|+|||||
T Consensus 321 ~RVCp---~CE~----aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaG 392 (1028)
T PRK06567 321 HRICN---DCSK----ACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLG 392 (1028)
T ss_pred CccCc---chHH----HhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcC
Confidence 38998 3998 99988 788999998887544320000 00 0000000001111112356799999999
Q ss_pred HHHHHHHHHHHHcCCcEEEECCCC
Q 011835 117 PAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 117 ~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
||||++|+.|++.|++|+|+|+..
T Consensus 393 PAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 393 PAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred HHHHHHHHHHHhCCCeEEEEcccc
Confidence 999999999999999999999854
No 136
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.05 E-value=2.6e-10 Score=117.79 Aligned_cols=149 Identities=13% Similarity=0.177 Sum_probs=94.6
Q ss_pred CccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 011835 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (476)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A 123 (476)
.|+|+++ |+. +|.....+++|.++..+.+..+...... .....+ +......+|+||||||||+++|
T Consensus 94 g~vC~~~--Ce~----~C~~~~~~~~v~i~~l~r~~~~~~~~~~------~~~~~~--~~~~~~~~VvIIGaGpAGl~aA 159 (471)
T PRK12810 94 GRVCPAP--CEG----ACTLNINFGPVTIKNIERYIIDKAFEEG------WVKPDP--PVKRTGKKVAVVGSGPAGLAAA 159 (471)
T ss_pred cCcCCch--hHH----hccCCCCCCCccHHHHHHHHHHHHHHcC------CCCCCC--CcCCCCCEEEEECcCHHHHHHH
Confidence 6899998 887 9999888899999988776554221111 000011 1113457999999999999999
Q ss_pred HHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHHH
Q 011835 124 AESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE 203 (476)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~ 203 (476)
..|++.|++|+|||+....+... .++.+....... +.....+.+.+
T Consensus 160 ~~l~~~G~~V~vie~~~~~GG~l---------------------------------~~gip~~~~~~~-~~~~~~~~~~~ 205 (471)
T PRK12810 160 DQLARAGHKVTVFERADRIGGLL---------------------------------RYGIPDFKLEKE-VIDRRIELMEA 205 (471)
T ss_pred HHHHhCCCcEEEEecCCCCCcee---------------------------------eecCCcccCCHH-HHHHHHHHHHh
Confidence 99999999999999876432110 001111112332 33444566778
Q ss_pred CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCc
Q 011835 204 SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKL 250 (476)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~ 250 (476)
.|++++ ++.+.. +. .. +.....+|.||+|+|+.....
T Consensus 206 ~gv~~~~~~~v~~-~~--------~~-~~~~~~~d~vvlAtGa~~~~~ 243 (471)
T PRK12810 206 EGIEFRTNVEVGK-DI--------TA-EELLAEYDAVFLGTGAYKPRD 243 (471)
T ss_pred CCcEEEeCCEECC-cC--------CH-HHHHhhCCEEEEecCCCCCCc
Confidence 899998 765521 10 00 111246899999999874433
No 137
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.05 E-value=5.5e-09 Score=108.08 Aligned_cols=143 Identities=19% Similarity=0.234 Sum_probs=84.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC--CC-CC---cccc------h----------HHHHh----cC-c
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP--FT-NN---YGVW------E----------DEFRD----LG-L 158 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~--~~-~~---~G~~------~----------~~l~~----~~-~ 158 (476)
.++||||||+|+||+++|+.|++.|.+|+||||... .. +. .|+. . ..+.. .+ .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999999753 11 11 1110 0 01111 00 0
Q ss_pred --chhhhh---------hc-ccceeeeC--CCCCEEeccCcc--eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC
Q 011835 159 --EGCIEH---------VW-RDTVVYID--EDEPILIGRAYG--RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS 221 (476)
Q Consensus 159 --~~~~~~---------~~-~~~~~~~~--~~~~~~~~~~~~--~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~ 221 (476)
...+.. .| ....+.+. ............ .-....+...|.+.+++.|++++ +++|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 000100 01 00001110 000000000000 00135678888899999999999 999999988766
Q ss_pred ceEEEEec--Cc--eEEECceEEEccCCCCC
Q 011835 222 GHRLVACE--HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 222 ~~~~v~~~--~g--~~i~a~~vV~A~G~~S~ 248 (476)
++++|.+. ++ ..++++.||+|+|..+.
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 56666653 23 46899999999998763
No 138
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.05 E-value=3.3e-09 Score=109.61 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=73.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---cc-chHHHHhcC-cchhhhhhcccceeeeCCCCCEE
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---GV-WEDEFRDLG-LEGCIEHVWRDTVVYIDEDEPIL 180 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G~-~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
..|||+||||||||+++|..|++.|++|+|+|+.. .+..| |. ..+.+.... +...... ......... ...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~-~~~-- 77 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAE-NVG-- 77 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccC-CCc--
Confidence 45899999999999999999999999999999865 33222 21 111111100 0000000 000000000 000
Q ss_pred eccCcc-eecH-----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecC-ceEEECceEEEccCCCCC
Q 011835 181 IGRAYG-RVSR-----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAASG 248 (476)
Q Consensus 181 ~~~~~~-~i~r-----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~-g~~i~a~~vV~A~G~~S~ 248 (476)
..+. .+.+ ..+...+...+++.||+++..+++.++. . .+.|...+ ++++++|.||+|+|+...
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~-~~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 78 --IDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDP--N-TVRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--C-EEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 0000 0111 1223345566677899999555655432 2 45555333 467999999999997763
No 139
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.04 E-value=8.4e-10 Score=113.29 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|||+||||||||+++|+.|++.|++|+|||+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 4899999999999999999999999999999863
No 140
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.04 E-value=5.4e-09 Score=95.73 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=90.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC------CcEEEECCCCCCCCCcccchHHHHhcCc--------------chhhhh-
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLG------LNVGLIGPDLPFTNNYGVWEDEFRDLGL--------------EGCIEH- 164 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G------~~V~liE~~~~~~~~~G~~~~~l~~~~~--------------~~~~~~- 164 (476)
+..+|+|||||+.|.++|++|++++ +.++|||+..-.....|...-.|.+.+. ...+..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 3468999999999999999999998 8999999865444333321111211111 111111
Q ss_pred -----hccc-----ceeeeC--CCCC------------------EEec--cCcceecHHHHHHHHHHHHHHCC-CeEEEE
Q 011835 165 -----VWRD-----TVVYID--EDEP------------------ILIG--RAYGRVSRHLLHEELLRRCVESG-VSYLSS 211 (476)
Q Consensus 165 -----~~~~-----~~~~~~--~~~~------------------~~~~--~~~~~i~r~~l~~~L~~~~~~~g-v~i~~~ 211 (476)
.|.- .....+ +..+ ..+| ...++++...+.+.+.+.+++.| |++.-.
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 1110 000000 1100 0122 24457899999999999997665 999977
Q ss_pred EEEEEEEcCCceEEEEec---C-ceEEECceEEEccCCCCCCcccc
Q 011835 212 KVESITESTSGHRLVACE---H-DMIVPCRLATVASGAASGKLLEY 253 (476)
Q Consensus 212 ~v~~i~~~~~~~~~v~~~---~-g~~i~a~~vV~A~G~~S~~~~~~ 253 (476)
+|.++..+..+...+... + ......+.+|+|.|.|+.+++..
T Consensus 169 kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 169 KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPF 214 (380)
T ss_pred eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccc
Confidence 888886444323333322 1 24567899999999999876543
No 141
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.04 E-value=3.9e-09 Score=111.71 Aligned_cols=141 Identities=24% Similarity=0.303 Sum_probs=83.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc------------hHHHHh-----cCc-c-hhhhh
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW------------EDEFRD-----LGL-E-GCIEH 164 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~------------~~~l~~-----~~~-~-~~~~~ 164 (476)
||||||+|+|||+||+.+++.|.+|+||||......+ -|++ ...+.+ -++ . ..+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999999999997543211 0110 001111 011 1 11110
Q ss_pred ---------hc-ccceeeeC---CCCCE--Eec-cCc------ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC
Q 011835 165 ---------VW-RDTVVYID---EDEPI--LIG-RAY------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS 221 (476)
Q Consensus 165 ---------~~-~~~~~~~~---~~~~~--~~~-~~~------~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~ 221 (476)
.| ....+.+. ++... .++ ... .......+...|.+.+.+.||+++ ++.|+++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g 160 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG 160 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence 01 11111111 11000 000 000 001234577888888888899999 999999988766
Q ss_pred ceEEEEe---cCce--EEECceEEEccCCCCCC
Q 011835 222 GHRLVAC---EHDM--IVPCRLATVASGAASGK 249 (476)
Q Consensus 222 ~~~~v~~---~~g~--~i~a~~vV~A~G~~S~~ 249 (476)
.+.+|.. .+|+ .+.|+.||+|||..+..
T Consensus 161 ~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 161 RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred EEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 4555543 3453 68999999999998854
No 142
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.04 E-value=5.8e-09 Score=110.52 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=87.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc-----------h----HHHHh-cCc--chh
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW-----------E----DEFRD-LGL--EGC 161 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~-----------~----~~l~~-~~~--~~~ 161 (476)
..++||||||||+|||+||+.+++.|.+|+|+||......+ -|+. . +.+.. -++ ...
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 35689999999999999999999999999999997542211 1111 0 01110 011 111
Q ss_pred hhh---------hc-ccceeeeC---CCCCEE--ec-c--------Ccce------ecHHHHHHHHHHHHHHCCCeEE-E
Q 011835 162 IEH---------VW-RDTVVYID---EDEPIL--IG-R--------AYGR------VSRHLLHEELLRRCVESGVSYL-S 210 (476)
Q Consensus 162 ~~~---------~~-~~~~~~~~---~~~~~~--~~-~--------~~~~------i~r~~l~~~L~~~~~~~gv~i~-~ 210 (476)
+.. .| ....+.++ ++.... .+ . ++.+ .....+...|.+.+.+.||+++ +
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~ 169 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIE 169 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEe
Confidence 110 01 01111111 110000 00 0 0000 1234688888898888999999 9
Q ss_pred EEEEEEEEcC-CceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 211 SKVESITEST-SGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 211 ~~v~~i~~~~-~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
+.++++..++ +.+++|.. .+| ..+.|+.||+|||..+..
T Consensus 170 ~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 170 YFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 9999998865 34666654 345 378999999999998854
No 143
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.04 E-value=6.3e-09 Score=106.67 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=62.1
Q ss_pred ceecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEE---ecCce--EEECceEEEccCCCCCCccccccCCC
Q 011835 186 GRVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVA---CEHDM--IVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~---~~~g~--~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
+.++...|.+.|.+.+.+ .|++++ +++|+++..++++.+.+. +.++. +++||.||+|.|++|..+++......
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~ 258 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE 258 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 468889999999999864 589999 999999988733345554 33442 68999999999999976554332111
Q ss_pred --cccceeEEEEEEEeeC
Q 011835 259 --KVSVQTAYGVEVEVEN 274 (476)
Q Consensus 259 --~~~~~~~~g~~~~~~~ 274 (476)
.....+..|..+..+.
T Consensus 259 ~~~~~i~PvkGq~l~l~~ 276 (497)
T PRK13339 259 SKHLGGFPISGQFLRCTN 276 (497)
T ss_pred cCCCceEeeeEEEEEecC
Confidence 1234456676666553
No 144
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.03 E-value=4.3e-09 Score=108.56 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred ceecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEEEec---Cce--EEECceEEEccCCCCCCccccccCCC
Q 011835 186 GRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLVACE---HDM--IVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v~~~---~g~--~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
+.++...+.+.|.+.+++.| ++++ +++|+++..++++.+.|.+. +|. +++|+.||+|+|.+|..+++......
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 36888899999999998876 8999 99999999866644555443 353 68999999999999976554332111
Q ss_pred --cccceeEEEEEEEee
Q 011835 259 --KVSVQTAYGVEVEVE 273 (476)
Q Consensus 259 --~~~~~~~~g~~~~~~ 273 (476)
.....+..|..+.++
T Consensus 258 ~~~~~i~PvrGq~l~~~ 274 (494)
T PRK05257 258 AKGYGGFPVSGQFLVCE 274 (494)
T ss_pred cCCCCeeeeeEEEEEcC
Confidence 113344556666554
No 145
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.02 E-value=3.3e-09 Score=112.53 Aligned_cols=143 Identities=18% Similarity=0.194 Sum_probs=84.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCCCc---c---cc---------hHHHHhc-----Cc--chh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY---G---VW---------EDEFRDL-----GL--EGC 161 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~---G---~~---------~~~l~~~-----~~--~~~ 161 (476)
.++||+|||||+|||+||+.+++. |.+|+||||........ | +. ...++.+ ++ ...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 458999999999999999999998 99999999975422111 1 10 0000000 11 001
Q ss_pred hhhh----------cccceeee--C-CCCCEEeccCcceecHHHHHHHHHHHHHHCC-CeEE-EEEEEEEEEcCCceEEE
Q 011835 162 IEHV----------WRDTVVYI--D-EDEPILIGRAYGRVSRHLLHEELLRRCVESG-VSYL-SSKVESITESTSGHRLV 226 (476)
Q Consensus 162 ~~~~----------~~~~~~~~--~-~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~i~-~~~v~~i~~~~~~~~~v 226 (476)
+... .....+.+ . .+....-+.....+....+.+.|.+.+++.| |+++ ++.|+++..+++.+.+|
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 1000 00111111 1 1110000000001345568888888887765 9999 99999998766545555
Q ss_pred E---ecCc--eEEECceEEEccCCCCC
Q 011835 227 A---CEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 227 ~---~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
. ..++ ..+.|+.||+|||..+.
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCchhh
Confidence 3 2344 36899999999998874
No 146
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.02 E-value=6.4e-09 Score=110.49 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=86.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc-----------hHHHHhc-----Cc--chhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW-----------EDEFRDL-----GL--EGCI 162 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~-----------~~~l~~~-----~~--~~~~ 162 (476)
.++||+|||+|.|||+||+.+++.|++|+|+||......+ .|++ ...+.++ ++ ...+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 4589999999999999999999999999999997643321 1111 0011111 11 1111
Q ss_pred hh---------hc-ccceeeeCC--CCCEE---ecc-C--------cce------ecHHHHHHHHHHHHHHCCCeEE-EE
Q 011835 163 EH---------VW-RDTVVYIDE--DEPIL---IGR-A--------YGR------VSRHLLHEELLRRCVESGVSYL-SS 211 (476)
Q Consensus 163 ~~---------~~-~~~~~~~~~--~~~~~---~~~-~--------~~~------i~r~~l~~~L~~~~~~~gv~i~-~~ 211 (476)
.. .| ....+.|+. ..... ++. . ... -....+...|.+.+.+.||+++ ++
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 208 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEY 208 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence 10 01 111122211 00000 000 0 000 1245688888888888899999 99
Q ss_pred EEEEEEEc-CCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 212 KVESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 212 ~v~~i~~~-~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
.++++..+ ++.+.+|.. .+| ..+.|+.||+|||..+..
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 99998876 444566654 245 367999999999998853
No 147
>PRK10262 thioredoxin reductase; Provisional
Probab=99.02 E-value=4.3e-09 Score=103.39 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=76.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
..+||+|||||||||+||..|++.|++|++||+... ...+... +. ...++ +.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~-gg~~~~~----------------~~--~~~~~-------~~~- 57 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTT----------------TE--VENWP-------GDP- 57 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC-CCceecC----------------ce--ECCCC-------CCC-
Confidence 458999999999999999999999999999985432 1111000 00 00000 000
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..++...+.+.+.+.+...++++...+|+.++..++ .+.+...++ ++.+|.||+|+|++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~v~~~~~-~~~~d~vilAtG~~~ 117 (321)
T PRK10262 58 NDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNR-PFRLTGDSG-EYTCDALIIATGASA 117 (321)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEecCC-eEEEEecCC-EEEECEEEECCCCCC
Confidence 124556677778888888888887556778877655 555554433 689999999999875
No 148
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.01 E-value=6.2e-09 Score=106.12 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEecc
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
...+||+|||||++|+++|+.|.+.|.. ++||||+...+..|-. .....+.+.. ..|. ..++.. +.....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~--~ry~~l~~~~---p~~~---~~~~~~-p~~~~~ 76 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY--NRYPGLRLDS---PKWL---LGFPFL-PFRWDE 76 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh--ccCCceEECC---chhe---eccCCC-ccCCcc
Confidence 4568999999999999999999999999 9999998765544311 0011111100 0000 000000 000000
Q ss_pred CcceecHHHHHHHHHHHHHHCCCe--EE-EEEEEEEEEcCCc-eEEEEecCceE--EECceEEEccCCCCC
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVS--YL-SSKVESITESTSG-HRLVACEHDMI--VPCRLATVASGAASG 248 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~~-~~~v~~~~g~~--i~a~~vV~A~G~~S~ 248 (476)
. .-....+...+.+.+++.++. +. ++.|+.+..++++ .+.|+++++.+ +.+|.||+|||.++.
T Consensus 77 ~--~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 77 A--FAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred c--CCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 0 112222556666666666644 33 5666666665443 78999988754 569999999998774
No 149
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.01 E-value=1.3e-07 Score=97.67 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=34.0
Q ss_pred CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 206 VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 206 v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
++|+ +++|+.|+.+++ .+.|++.+|+++.+|.||.|+-...
T Consensus 238 ~~i~~~~~V~~I~~~~~-~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGS-NYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred CeEEcCCeEEEEEecCC-cEEEEECCCcEEEcCEEEECCCHHH
Confidence 5688 999999998777 5677888888899999999987544
No 150
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=6.3e-09 Score=110.89 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cc--eEEECceEEEccCCCCCC
Q 011835 194 HEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 194 ~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~~ 249 (476)
.+.|.+.+++.||+++ ++.|+++..+++.+++|.+. +| ..+.|+.||+|||..+..
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 3666777888899999 99999998766656666654 34 368999999999998853
No 151
>PLN02507 glutathione reductase
Probab=98.99 E-value=2.9e-09 Score=110.51 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC---------CCCCCc---cc-chHHHHh-cCcchhhhhhcccce
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL---------PFTNNY---GV-WEDEFRD-LGLEGCIEHVWRDTV 170 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~---------~~~~~~---G~-~~~~l~~-~~~~~~~~~~~~~~~ 170 (476)
..+|||+||||||+|+.+|..|++.|.+|+|||+.. ..+..| |. ..+.+-. ..+...+.+ .....
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~~G 101 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKNYG 101 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHhcC
Confidence 346899999999999999999999999999999631 112111 11 1111100 000000000 00000
Q ss_pred eeeCCCCCEEeccCccee--cHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCce--EEECceEEEccCCC
Q 011835 171 VYIDEDEPILIGRAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAA 246 (476)
Q Consensus 171 ~~~~~~~~~~~~~~~~~i--~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~--~i~a~~vV~A~G~~ 246 (476)
........+.+..-.... ....+...+.+.+...||+++..++..++.. .+.|...+|+ ++.+|.||+|+|+.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~---~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN---EVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC---EEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 000000000000000000 0122344455556778999997677776542 5677777774 58999999999976
Q ss_pred C
Q 011835 247 S 247 (476)
Q Consensus 247 S 247 (476)
.
T Consensus 179 p 179 (499)
T PLN02507 179 A 179 (499)
T ss_pred C
Confidence 5
No 152
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=1e-08 Score=108.57 Aligned_cols=145 Identities=21% Similarity=0.343 Sum_probs=85.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----ccc-----------ch----HHHHh-cCc--chh
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV-----------WE----DEFRD-LGL--EGC 161 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~-----------~~----~~l~~-~~~--~~~ 161 (476)
...+||+|||+|.|||+||+.+++.|.+|+||||......+ -|+ +. +.+.. -++ +..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 34589999999999999999999999999999996432211 011 00 00110 011 111
Q ss_pred hhhh---------c-ccceeeeC--CCCCEE---ec-c-------Ccce------ecHHHHHHHHHHHHHHCCCeEE-EE
Q 011835 162 IEHV---------W-RDTVVYID--EDEPIL---IG-R-------AYGR------VSRHLLHEELLRRCVESGVSYL-SS 211 (476)
Q Consensus 162 ~~~~---------~-~~~~~~~~--~~~~~~---~~-~-------~~~~------i~r~~l~~~L~~~~~~~gv~i~-~~ 211 (476)
+... | ....+.++ ...... .+ . +... -....+...|.+.+.+.|++++ ++
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~ 169 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEW 169 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCc
Confidence 1100 0 11111111 010000 00 0 0000 1235688888888888999999 99
Q ss_pred EEEEEEEcC-CceEEEEe---cCce--EEECceEEEccCCCCCC
Q 011835 212 KVESITEST-SGHRLVAC---EHDM--IVPCRLATVASGAASGK 249 (476)
Q Consensus 212 ~v~~i~~~~-~~~~~v~~---~~g~--~i~a~~vV~A~G~~S~~ 249 (476)
.++++..++ +.+.+|.+ .+|+ .+.++.||+|||..+..
T Consensus 170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 999998764 43566654 2443 67899999999998854
No 153
>PRK06370 mercuric reductase; Validated
Probab=98.98 E-value=1.8e-09 Score=111.46 Aligned_cols=35 Identities=49% Similarity=0.678 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.+|||+||||||||+++|+.|++.|++|+|||+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45999999999999999999999999999999864
No 154
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=7e-09 Score=109.78 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC---CcEEEECCCCCCCCCc-----ccch-----------HHH----Hh-cCc--
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLG---LNVGLIGPDLPFTNNY-----GVWE-----------DEF----RD-LGL-- 158 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G---~~V~liE~~~~~~~~~-----G~~~-----------~~l----~~-~~~-- 158 (476)
..++||+|||+|+|||+||+.+++.| .+|+|+||......+. |++. ..+ .. -++
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 34589999999999999999999998 8999999976433211 2110 000 00 011
Q ss_pred chhhhh---------hc-ccceeeeC---CCCCE--Eec-cCccee------cHHHHHHHHHHHHHH-CCCeEE-EEEEE
Q 011835 159 EGCIEH---------VW-RDTVVYID---EDEPI--LIG-RAYGRV------SRHLLHEELLRRCVE-SGVSYL-SSKVE 214 (476)
Q Consensus 159 ~~~~~~---------~~-~~~~~~~~---~~~~~--~~~-~~~~~i------~r~~l~~~L~~~~~~-~gv~i~-~~~v~ 214 (476)
...+.. .| ....+.+. ++... ..+ ..+..+ ....+...|.+.+.+ .||+++ ++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 011110 01 11111111 11100 000 011111 224577778887765 699999 99999
Q ss_pred EEEEcCCceEEEEe---cCce--EEECceEEEccCCCCC
Q 011835 215 SITESTSGHRLVAC---EHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 215 ~i~~~~~~~~~v~~---~~g~--~i~a~~vV~A~G~~S~ 248 (476)
++..+++.+.+|.. .+++ .+.|+.||+|||..+.
T Consensus 163 ~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 163 SLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 99876654555543 3553 5899999999999874
No 155
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=8.8e-09 Score=109.00 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC----CceEEEEe---cCce--EEECceEEEccCCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITEST----SGHRLVAC---EHDM--IVPCRLATVASGAASGK 249 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~----~~~~~v~~---~~g~--~i~a~~vV~A~G~~S~~ 249 (476)
...+...|.+.+.+.||+++ ++.|+++..++ +.+.+|.. .+++ .+.|+.||+|||..+..
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35688889998988999999 99999998765 44555544 3453 67899999999998854
No 156
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=7.9e-09 Score=109.26 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=84.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCCC-C----cccc------------hHHH----H-hcCc--ch
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTN-N----YGVW------------EDEF----R-DLGL--EG 160 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~-~----~G~~------------~~~l----~-~~~~--~~ 160 (476)
++||+|||||+|||+||+.|++.| .+|+|+||...... . -|+. ...+ . ..++ ..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 479999999999999999999874 89999999764331 1 1221 0000 0 0011 11
Q ss_pred hhhh---------hc-ccceeeeC---CCCCE--Ee-ccCcce------ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEE
Q 011835 161 CIEH---------VW-RDTVVYID---EDEPI--LI-GRAYGR------VSRHLLHEELLRRCVESGVSYL-SSKVESIT 217 (476)
Q Consensus 161 ~~~~---------~~-~~~~~~~~---~~~~~--~~-~~~~~~------i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~ 217 (476)
.+.. .| ....+.++ ++... .. +..+.. .....+...|.+.+.+.||+++ ++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 1110 01 11111111 11000 00 000001 1235688888888888999999 99999998
Q ss_pred EcCCceEEEE---ecCce--EEECceEEEccCCCCCC
Q 011835 218 ESTSGHRLVA---CEHDM--IVPCRLATVASGAASGK 249 (476)
Q Consensus 218 ~~~~~~~~v~---~~~g~--~i~a~~vV~A~G~~S~~ 249 (476)
.+++.+.++. ..+++ .+.|+.||+|||.++..
T Consensus 163 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 163 LEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 7655455444 23553 68999999999998854
No 157
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.98 E-value=2.6e-07 Score=96.55 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..+.+.|.+.+++.|++|+ ++.|+++..++++.+.|.+.+|+++.||.||.|.+...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 5678888888999999999 99999999877656788888888899999999988644
No 158
>PTZ00058 glutathione reductase; Provisional
Probab=98.97 E-value=2.3e-09 Score=111.95 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=33.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+.+|||+||||||||+++|+.|++.|.+|+|||+..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 356899999999999999999999999999999863
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=5e-09 Score=108.11 Aligned_cols=133 Identities=16% Similarity=0.209 Sum_probs=70.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC---cc-cchHHHHhc-Ccchhhhh-hcccceeeeCCCCCEE
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YG-VWEDEFRDL-GLEGCIEH-VWRDTVVYIDEDEPIL 180 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~---~G-~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 180 (476)
+|||+||||||||++||..|++.|++|+|||+....+.. +| ++.+.+-.. .+...+.. ......+.. .
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~------~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV------K 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc------c
Confidence 489999999999999999999999999999974333322 22 222211110 00000000 000000000 0
Q ss_pred eccCcce-ec-----HHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 181 IGRAYGR-VS-----RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 181 ~~~~~~~-i~-----r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
....+.. +. ...+...+...++..||+++.... .+.. +..+.|...+| .++++|.||+|||+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc--CCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 0001110 00 112233444455667899884333 2222 22456666666 36999999999998653
No 160
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.97 E-value=1.2e-08 Score=107.74 Aligned_cols=144 Identities=20% Similarity=0.233 Sum_probs=84.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCCCc-----ccc---------hHHHHhc-----Cc--chhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY-----GVW---------EDEFRDL-----GL--EGCI 162 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~-----G~~---------~~~l~~~-----~~--~~~~ 162 (476)
.++||+|||+|.|||+||+.+++. |.+|+|+||......+. |+. ...+.++ ++ ...+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 357999999999999999999987 48999999976433221 110 0011110 11 1111
Q ss_pred hhh---------c-ccceeeeCC--CCCEE---ec-cCcce------ecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEE
Q 011835 163 EHV---------W-RDTVVYIDE--DEPIL---IG-RAYGR------VSRHLLHEELLRRCVES-GVSYL-SSKVESITE 218 (476)
Q Consensus 163 ~~~---------~-~~~~~~~~~--~~~~~---~~-~~~~~------i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~ 218 (476)
... | ....+.++. ..... .+ ....+ -....+...|.+.+.+. +|+++ ++.++++..
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 162 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILV 162 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEE
Confidence 100 1 111122211 10000 00 00000 12345777788777664 89999 999999998
Q ss_pred cCCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 219 STSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 219 ~~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
+++.+.+|.. .+| ..+.|+.||+|||.++..
T Consensus 163 ~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 163 DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 7664555433 455 478999999999999854
No 161
>PLN02546 glutathione reductase
Probab=98.96 E-value=3.3e-09 Score=110.89 Aligned_cols=131 Identities=12% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCc-chhhhhhc-----------cc---c
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGL-EGCIEHVW-----------RD---T 169 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~-~~~~~~~~-----------~~---~ 169 (476)
..+|||+||||||+|+.+|..|++.|.+|+|+|+..+....- -...+...|+ .+|++... .. .
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~--~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSD--TLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccc--cCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence 346899999999999999999999999999999631000000 0000112233 23333111 00 0
Q ss_pred eeeeCCCCCEEeccCcce-ec-----HHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEcc
Q 011835 170 VVYIDEDEPILIGRAYGR-VS-----RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~-i~-----r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.+...... ...+.. +. ...+...+.+.+++.||+++..+++.++.. . |.+ +|+++.+|.||+|+
T Consensus 155 g~~~~~~~----~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~---~--V~v-~G~~~~~D~LVIAT 224 (558)
T PLN02546 155 GWKYETEP----KHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH---T--VDV-DGKLYTARNILIAV 224 (558)
T ss_pred CcccCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC---E--EEE-CCEEEECCEEEEeC
Confidence 00000000 011111 11 133556666777788999996666666542 2 333 57789999999999
Q ss_pred CCCC
Q 011835 244 GAAS 247 (476)
Q Consensus 244 G~~S 247 (476)
|+..
T Consensus 225 Gs~p 228 (558)
T PLN02546 225 GGRP 228 (558)
T ss_pred CCCC
Confidence 9766
No 162
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.96 E-value=1.7e-09 Score=114.15 Aligned_cols=151 Identities=15% Similarity=0.225 Sum_probs=103.1
Q ss_pred ccCCCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHH
Q 011835 39 DCNHSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPA 118 (476)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~a 118 (476)
-.+++.||||.+ |++ +|.+.-.+++|.+-..+...++...... +....||.. .....|+|||.|||
T Consensus 1731 fpeftgrvcpap--ceg----actlgiie~pv~iksie~aiid~af~eg------wm~p~pp~~--rtg~~vaiigsgpa 1796 (2142)
T KOG0399|consen 1731 FPEFTGRVCPAP--CEG----ACTLGIIEPPVGIKSIECAIIDKAFEEG------WMKPCPPAF--RTGKRVAIIGSGPA 1796 (2142)
T ss_pred CccccCccCCCC--cCc----ceeeecccCCccccchhhHHHHHHHHhc------CCccCCccc--ccCcEEEEEccCch
Confidence 346779999886 888 9999988999988887776665433222 333344443 45679999999999
Q ss_pred HHHHHHHHHHcCCcEEEECCCCCCC--CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHH
Q 011835 119 GLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEE 196 (476)
Q Consensus 119 Gl~~A~~La~~G~~V~liE~~~~~~--~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~ 196 (476)
||+||-.|-|.|+.|+|+||....+ -.||+. .-.++...+++.
T Consensus 1797 glaaadqlnk~gh~v~vyer~dr~ggll~ygip-----------------------------------nmkldk~vv~rr 1841 (2142)
T KOG0399|consen 1797 GLAAADQLNKAGHTVTVYERSDRVGGLLMYGIP-----------------------------------NMKLDKFVVQRR 1841 (2142)
T ss_pred hhhHHHHHhhcCcEEEEEEecCCcCceeeecCC-----------------------------------ccchhHHHHHHH
Confidence 9999999999999999999976433 233432 112333322222
Q ss_pred HHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 197 LLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 197 L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
.+.+.+.||++. |+++-. .|.. |+-.-+.|+||+|+|+.-++
T Consensus 1842 -v~ll~~egi~f~tn~eigk---------~vs~-d~l~~~~daiv~a~gst~pr 1884 (2142)
T KOG0399|consen 1842 -VDLLEQEGIRFVTNTEIGK---------HVSL-DELKKENDAIVLATGSTTPR 1884 (2142)
T ss_pred -HHHHHhhCceEEeeccccc---------cccH-HHHhhccCeEEEEeCCCCCc
Confidence 566788899999 877621 1221 22223579999999976543
No 163
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.96 E-value=9.1e-09 Score=78.81 Aligned_cols=79 Identities=29% Similarity=0.298 Sum_probs=65.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCccee
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRV 188 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 188 (476)
.|+|||||+.|+-+|..|++.|.+|+|+++.+.+... +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------~ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------F 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT------------------------------------------S
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh------------------------------------------c
Confidence 4899999999999999999999999999987753311 2
Q ss_pred cHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc
Q 011835 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD 231 (476)
Q Consensus 189 ~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g 231 (476)
+ ..+...+.+.+++.||+++ ++.++.++.++++ +.|+++||
T Consensus 39 ~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 39 D-PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp S-HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence 2 3366666788888999999 9999999999886 55888776
No 164
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.95 E-value=1.8e-08 Score=102.03 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 181 IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 181 ~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
+.+..|.++...+...|...+.+.|+.|+ ++.|+++....++...|.+..|. |++..||.|+|.|.+..-
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg 247 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVG 247 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHHHhh
Confidence 44566789999999999999999999999 99999999887777888888874 899999999999996433
No 165
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.95 E-value=8.7e-09 Score=110.01 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cce--EEECceEEEccCCCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HDM--IVPCRLATVASGAASGK 249 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g~--~i~a~~vV~A~G~~S~~ 249 (476)
..+...|.+.+.+.||+++ ++.|+++..+++.+.++.+. +|+ .+.|+.||+|||.++..
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 4466678888888999999 99999999876655555543 453 56899999999988854
No 166
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.5e-08 Score=107.21 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc-----------hHHHHhc-----Cc--chhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW-----------EDEFRDL-----GL--EGCI 162 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~-----------~~~l~~~-----~~--~~~~ 162 (476)
.++||+|||+|.|||+||+.+++.|.+|+|+||......+. |++ ...+.++ ++ .+.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 35899999999999999999999999999999975432211 110 0011110 11 1111
Q ss_pred hh---------hc-ccceeeeCCC--CCEE---ecc--------Ccce------ecHHHHHHHHHHHHHHCCCeEE-EEE
Q 011835 163 EH---------VW-RDTVVYIDED--EPIL---IGR--------AYGR------VSRHLLHEELLRRCVESGVSYL-SSK 212 (476)
Q Consensus 163 ~~---------~~-~~~~~~~~~~--~~~~---~~~--------~~~~------i~r~~l~~~L~~~~~~~gv~i~-~~~ 212 (476)
.. .| ....+.++.. .... ++. .+.+ -....|...|.+.+.+.||+++ ++.
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 10 01 1111111110 0000 000 0000 1235688888888888899999 999
Q ss_pred EEEEEEc-CCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 213 VESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 213 v~~i~~~-~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
++++..+ ++.+++|.. .+| ..+.|+.||+|||..+..
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 9999875 444666654 245 367899999999998854
No 167
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.95 E-value=7.8e-09 Score=106.12 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=69.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC-CCCC---ccc-chHHHHhcCcchhhhhhcccceeeeCCCCCEEe
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTNN---YGV-WEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~-~~~~---~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
.|||+||||||||+++|+.|++.|++|+|||+... .+.. .|. ....+.. ....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~------------~~~~---------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVH------------DAQQ---------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHH------------Hhcc----------
Confidence 48999999999999999999999999999998642 2211 111 1111100 0000
Q ss_pred ccCcc-eecH-HHHHHH----HHHHH-HHCCCeEEEEEEEEEEEcCCceEEEEecCce-EEECceEEEccCCCC
Q 011835 182 GRAYG-RVSR-HLLHEE----LLRRC-VESGVSYLSSKVESITESTSGHRLVACEHDM-IVPCRLATVASGAAS 247 (476)
Q Consensus 182 ~~~~~-~i~r-~~l~~~----L~~~~-~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~-~i~a~~vV~A~G~~S 247 (476)
...+. .+.+ ..+... ..+.+ +..|++++..++..++. + .+.|...++. ++.+|.||+|||+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~-~~~v~~~~g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 61 HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINN--H-SLRVHRPEGNLEIHGEKIFINTGAQT 131 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecC--C-EEEEEeCCCeEEEEeCEEEEcCCCcC
Confidence 00010 0111 111111 22233 33499999656766643 2 5667776774 799999999999765
No 168
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1e-08 Score=106.80 Aligned_cols=140 Identities=24% Similarity=0.290 Sum_probs=82.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc---------hHHHHhc-----Cc--chhhhh-
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW---------EDEFRDL-----GL--EGCIEH- 164 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~---------~~~l~~~-----~~--~~~~~~- 164 (476)
.+||+|||+|.|||+||+.+++ |.+|+|+||......+. |++ ...+.++ ++ .+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4799999999999999999986 99999999976433211 111 1111111 11 111110
Q ss_pred ---------hcccceeeeC--CCCCEEec----cCc-------ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC
Q 011835 165 ---------VWRDTVVYID--EDEPILIG----RAY-------GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS 221 (476)
Q Consensus 165 ---------~~~~~~~~~~--~~~~~~~~----~~~-------~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~ 221 (476)
.+....+.++ ........ ... +......+.+.|.+.+. .||+++ ++.|+++..+++
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence 0111111221 11111110 000 11223457777777775 699999 999999987665
Q ss_pred ceEEEEecC--c--eEEECceEEEccCCCCC
Q 011835 222 GHRLVACEH--D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 222 ~~~~v~~~~--g--~~i~a~~vV~A~G~~S~ 248 (476)
.+.+|.+.+ + ..+.|+.||+|+|..+.
T Consensus 161 ~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 161 RCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 455565543 3 26899999999999885
No 169
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=1.3e-08 Score=108.28 Aligned_cols=143 Identities=24% Similarity=0.296 Sum_probs=83.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----ccc------------chHHHHh-----cCc--chh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV------------WEDEFRD-----LGL--EGC 161 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~------------~~~~l~~-----~~~--~~~ 161 (476)
..+||||||+|.|||+||+.+++.|.+|+||||......+ -|+ +...+.+ -++ ...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 4589999999999999999999999999999997543211 111 0111110 011 111
Q ss_pred hh----------hhcccceeeeC--CCCCEE---e-ccCcce------ecHHHHHHHHHHHHHHC--------C-----C
Q 011835 162 IE----------HVWRDTVVYID--EDEPIL---I-GRAYGR------VSRHLLHEELLRRCVES--------G-----V 206 (476)
Q Consensus 162 ~~----------~~~~~~~~~~~--~~~~~~---~-~~~~~~------i~r~~l~~~L~~~~~~~--------g-----v 206 (476)
+. ..+....+.++ ...... . +..+.. -....+...|.+.+.+. | |
T Consensus 87 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v 166 (626)
T PRK07803 87 AELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARI 166 (626)
T ss_pred HHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCce
Confidence 11 00011111111 111110 0 011111 12356777788877665 6 9
Q ss_pred eEE-EEEEEEEEEcCCceEEEEe---cCce--EEECceEEEccCCCCC
Q 011835 207 SYL-SSKVESITESTSGHRLVAC---EHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 207 ~i~-~~~v~~i~~~~~~~~~v~~---~~g~--~i~a~~vV~A~G~~S~ 248 (476)
+++ ++.|+++..+++.+.++.. .+++ .+.|+.||+|||..+.
T Consensus 167 ~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 167 KVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred EEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 999 9999999876554555443 3453 6899999999998664
No 170
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.93 E-value=9.2e-09 Score=106.49 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=73.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCC------CCCCCC---ccc-chHHHH-hcCcchhhhhhcccceeeeC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD------LPFTNN---YGV-WEDEFR-DLGLEGCIEHVWRDTVVYID 174 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~------~~~~~~---~G~-~~~~l~-~~~~~~~~~~~~~~~~~~~~ 174 (476)
..|||+||||||||+++|+.|++.|.+|+|||+. ...+.. +|. ....+- ...+.....+......+...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 3589999999999999999999999999999981 111111 111 111110 00000000000000000000
Q ss_pred CCCCEEeccCcce-ecH-----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCc-eEEEEecCceEEECceEEEccCCCC
Q 011835 175 EDEPILIGRAYGR-VSR-----HLLHEELLRRCVESGVSYLSSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 175 ~~~~~~~~~~~~~-i~r-----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.....+.. +.+ ..+...+.+.++..||+++..++..+..+++. .+.+...++.++++|.||+|||+..
T Consensus 83 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 83 -----GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred -----CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 00001110 111 12333455556678999996677777654432 2333323456899999999999776
Q ss_pred C
Q 011835 248 G 248 (476)
Q Consensus 248 ~ 248 (476)
.
T Consensus 158 ~ 158 (475)
T PRK06327 158 R 158 (475)
T ss_pred C
Confidence 4
No 171
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.93 E-value=5.7e-09 Score=108.34 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=83.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHH-hcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFR-DLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.|+|||||++||++|..|.+.|++|+++|+....+..|-.....-. ...+.+.+..........+.+. +..-..+. .
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdf-p~p~~~p~-f 80 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDF-PFPEDYPD-F 80 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS--HCCCCSS-S
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCc-CCCCCCCC-C
Confidence 6999999999999999999999999999998876654421000000 0000000000000000001100 00000111 3
Q ss_pred ecHHHHHHHHHHHHHHCCCe--EE-EEEEEEEEEcCC----ceEEEEecC-c--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVS--YL-SSKVESITESTS----GHRLVACEH-D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~--i~-~~~v~~i~~~~~----~~~~v~~~~-g--~~i~a~~vV~A~G~~S~ 248 (476)
.++..+.+.|...++..++. |. +++|+++...++ +.+.|++.+ | ++-..|.||+|+|.++.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 78899999999999988864 77 999999998653 367777754 3 34468999999998884
No 172
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.4e-09 Score=92.24 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=89.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
..+|+|||.|||+.++|++++++.++.+|+|-.......-|- .......-....+.|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGG---------------------QLtTTT~veNfPGFPdg 66 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGG---------------------QLTTTTDVENFPGFPDG 66 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCc---------------------eeeeeeccccCCCCCcc
Confidence 358999999999999999999999999999964422211110 00000000011233444
Q ss_pred eecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
+...+|.+.++++.++.|.+++...|.+++.+.. ...+.+ |.+.+.+|.||+|+|+.. +++.++..+.
T Consensus 67 -i~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~ssk-pF~l~t-d~~~v~~~avI~atGAsA-kRl~~pg~ge 134 (322)
T KOG0404|consen 67 -ITGPELMDKMRKQSERFGTEIITETVSKVDLSSK-PFKLWT-DARPVTADAVILATGASA-KRLHLPGEGE 134 (322)
T ss_pred -cccHHHHHHHHHHHHhhcceeeeeehhhccccCC-CeEEEe-cCCceeeeeEEEecccce-eeeecCCCCc
Confidence 6778899999999999999999888999998877 555555 456799999999999554 6666665433
No 173
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.93 E-value=2.4e-08 Score=105.36 Aligned_cols=143 Identities=20% Similarity=0.228 Sum_probs=84.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCCCc-----ccc---------hHHHHhc-----Cc--chhhh
Q 011835 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNY-----GVW---------EDEFRDL-----GL--EGCIE 163 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~~-----G~~---------~~~l~~~-----~~--~~~~~ 163 (476)
++||+|||||+|||+||+.+++. |.+|+|+||......+. |+. ...+.++ ++ ...+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 47999999999999999999987 58999999976533221 110 1111111 11 11111
Q ss_pred h---------hc-ccceeeeC---CCCCEE--ec-cCcce------ecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEc
Q 011835 164 H---------VW-RDTVVYID---EDEPIL--IG-RAYGR------VSRHLLHEELLRRCVE-SGVSYL-SSKVESITES 219 (476)
Q Consensus 164 ~---------~~-~~~~~~~~---~~~~~~--~~-~~~~~------i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~ 219 (476)
. .| ....+.+. ++.... .+ ..+.+ -....+...|.+.+.+ .||+++ ++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 0 00 11111111 111000 00 00000 1345688888888766 489999 9999999987
Q ss_pred CCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 220 TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 220 ~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
++.+.+|.. .+| ..+.|+.||+|||..+..
T Consensus 163 ~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 665555543 355 468999999999998853
No 174
>PRK08275 putative oxidoreductase; Provisional
Probab=98.93 E-value=7e-09 Score=109.24 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=84.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCC-C--c---ccch----------HHHHhc-----Cc--ch
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTN-N--Y---GVWE----------DEFRDL-----GL--EG 160 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~-~--~---G~~~----------~~l~~~-----~~--~~ 160 (476)
..+||+|||||.|||+||+.+++. |.+|+|+||...... . . |+.. ..+..+ ++ ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999987 789999999764211 1 1 1100 001000 11 11
Q ss_pred hhhhh---------c-ccceeeeC--CCCCEEecc-----Cc--ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc-
Q 011835 161 CIEHV---------W-RDTVVYID--EDEPILIGR-----AY--GRVSRHLLHEELLRRCVESGVSYL-SSKVESITES- 219 (476)
Q Consensus 161 ~~~~~---------~-~~~~~~~~--~~~~~~~~~-----~~--~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~- 219 (476)
.+... | ....+.+. ......... .+ ..-....+.+.|.+.+++.||+++ ++.|+++..+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 11100 0 01111111 011110000 00 001234678888898988999999 9999999886
Q ss_pred CCceEEEEe---cCce--EEECceEEEccCCCCC
Q 011835 220 TSGHRLVAC---EHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 220 ~~~~~~v~~---~~g~--~i~a~~vV~A~G~~S~ 248 (476)
++.+.+|.. .+|+ .+.|+.||+|||..+.
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 443555543 3453 5799999999998874
No 175
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.8e-08 Score=105.98 Aligned_cols=142 Identities=21% Similarity=0.250 Sum_probs=84.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC-CC-CC-c---ccc---------hHHHHhc-----Cc--chhhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FT-NN-Y---GVW---------EDEFRDL-----GL--EGCIE 163 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~-~~-~~-~---G~~---------~~~l~~~-----~~--~~~~~ 163 (476)
..+||+|||+|.|||+||+.+ +.|.+|+|+||... .. ++ + |++ ...+.++ ++ ...+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 457999999999999999999 99999999999753 22 11 1 110 0111111 11 11111
Q ss_pred h---------hc-ccceeeeCC--CCCEE---ec-cCcce------ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC
Q 011835 164 H---------VW-RDTVVYIDE--DEPIL---IG-RAYGR------VSRHLLHEELLRRCVESGVSYL-SSKVESITEST 220 (476)
Q Consensus 164 ~---------~~-~~~~~~~~~--~~~~~---~~-~~~~~------i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~ 220 (476)
. .| ....+.+.. ..... ++ ..+.. .....+...|.+.+++.||+++ ++.++++..++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~ 164 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDE 164 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC
Confidence 0 01 111111110 00000 00 00000 1235677888888888999999 99999998876
Q ss_pred Cc-eEEEEe---cCc--eEEECceEEEccCCCCC
Q 011835 221 SG-HRLVAC---EHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 221 ~~-~~~v~~---~~g--~~i~a~~vV~A~G~~S~ 248 (476)
++ +++|.. .++ ..+.|+.||+|||..+.
T Consensus 165 ~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 165 NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 65 555543 345 36899999999998874
No 176
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.93 E-value=1.1e-08 Score=104.92 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=68.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC-CCCC---cc-cchHHHHhcCcchhhhhhcccceeeeCCCCCEEe
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP-FTNN---YG-VWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~-~~~~---~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
.|||+||||||||+++|..|++.|++|+|||+... ++.. .| +....+-.. .. .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~------------~~----------~ 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVA------------AE----------K 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhh------------hh----------c
Confidence 48999999999999999999999999999998752 2211 11 111110000 00 0
Q ss_pred ccCccee--cH----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecC-ceEEECceEEEccCCCC
Q 011835 182 GRAYGRV--SR----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAAS 247 (476)
Q Consensus 182 ~~~~~~i--~r----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~-g~~i~a~~vV~A~G~~S 247 (476)
+..+..+ .+ ..+.....+.+.+.||+++...+..++ +. .+.+...+ ..++.+|.||+|||+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~-~v~v~~~~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 61 NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVS--NK-VIEVQAGDEKIELTAETIVINTGAVS 130 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEeeCCCcEEEEcCEEEEeCCCCC
Confidence 0011101 11 112333345567789999955554432 22 44444322 35799999999999876
No 177
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.93 E-value=1.1e-06 Score=90.64 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=33.7
Q ss_pred eEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 207 SYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 207 ~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+|+ +++|+.|+.+++ .+.|.+.+|+++.+|.||.|.-...
T Consensus 235 ~i~~~~~V~~i~~~~~-~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 235 TIHKGTPVTKIDKSGD-GYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred eEEeCCEEEEEEEcCC-eEEEEECCCCEEEcCEEEECCCHHH
Confidence 688 999999998877 5677888888899999999987544
No 178
>PLN02815 L-aspartate oxidase
Probab=98.92 E-value=1.2e-08 Score=107.62 Aligned_cols=143 Identities=24% Similarity=0.320 Sum_probs=84.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc---------hHHHHhc-----Cc--chhhh
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFRDL-----GL--EGCIE 163 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~---------~~~l~~~-----~~--~~~~~ 163 (476)
..++||+|||+|.|||+||+.+++.| +|+|+||......+ -|++ ...+.++ ++ ...+.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 34589999999999999999999999 99999997653321 1111 0111111 11 11111
Q ss_pred h---------hc-ccceeeeCC--CCCEEe---c-cCc------ceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEc
Q 011835 164 H---------VW-RDTVVYIDE--DEPILI---G-RAY------GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITES 219 (476)
Q Consensus 164 ~---------~~-~~~~~~~~~--~~~~~~---~-~~~------~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~ 219 (476)
. .| ....+.++. ...... + ... +......+...|.+.+.+. ||+++ ++.++++..+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 0 01 111111211 000000 0 000 0113456778888888654 89999 9999999875
Q ss_pred CCc----eEEEEec---Cc--eEEECceEEEccCCCCC
Q 011835 220 TSG----HRLVACE---HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 220 ~~~----~~~v~~~---~g--~~i~a~~vV~A~G~~S~ 248 (476)
+++ +++|.+. +| ..+.|+.||+|||....
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 432 4566542 45 36789999999998875
No 179
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.92 E-value=5.6e-08 Score=96.02 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=118.4
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccce
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQ 263 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~ 263 (476)
.+.++...+...|.+.+.+.|++++ +++|+++..+++++..|.+.+| +++||.||+|+|.++..+..+ ...
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~~-------~~~ 202 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLPL-------PLR 202 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhcccC-------Ccc
Confidence 3578999999999999999999999 9999999987765566777777 799999999999999766541 122
Q ss_pred eEEEEEEEeeCCCCC-CCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCCCC-CChHHHHHHHHHH
Q 011835 264 TAYGVEVEVENNPYD-PSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASKDG-LPFDILKKKLMAR 341 (476)
Q Consensus 264 ~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 341 (476)
...+..+.++..... ....... . .. ....|+.|..++++.+|.+....... ....+..+.+.+.
T Consensus 203 ~~~g~~~~~~~~~~~~~~~~~~~-~-----------~~--~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~ 268 (337)
T TIGR02352 203 PVRGQPLRLEAPAVPLLNRPLRA-V-----------VY--GRRVYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRD 268 (337)
T ss_pred ccCceEEEeeccccccCCcccce-E-----------EE--cCCEEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHH
Confidence 233444433322110 0000000 0 00 11257889888888888654322211 1223334445554
Q ss_pred HHHcCCcccceeEEEEEEeeCCCCCCCCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHHHHH
Q 011835 342 LERLGIQVLKTYEEEWSYIPVGGSLPNTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYASAIA 406 (476)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~~l~ 406 (476)
+..+-+.+.... ....+.+..+.+.++.++||.. ......+.|.|+..+...|..+|+.|.
T Consensus 269 ~~~~~P~l~~~~----~~~~~~g~r~~t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 269 AYTILPALKEAR----LLETWAGLRPGTPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred HHHhCCCcccCc----HHHheecCCCCCCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 444433322111 1112344555566777777742 334556677888887777777777765
No 180
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.92 E-value=6.4e-07 Score=92.63 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccC
Q 011835 193 LHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASG 244 (476)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G 244 (476)
|.+.|.+.+.+ ++|+ +++|+.|+.+++ .+.|.+.+|+++.+|.||.|.-
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGD-RYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCC-EEEEEECCCCEEEeCEEEECCC
Confidence 33444444422 5788 999999998877 5678787888899999999985
No 181
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.92 E-value=1.1e-08 Score=103.58 Aligned_cols=139 Identities=20% Similarity=0.232 Sum_probs=75.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHHHhcCcchhhhhhcccc----eeeeCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFRDLGLEGCIEHVWRDT----VVYIDEDE 177 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (476)
.+||++|||+||||..+|+.+++.|.+|+|+|+....+..| | ++.+.|-... .+...+... .+.....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a---~~~~~~~~~~~~~Gi~~~~~- 78 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAA---EVIEEARHAAKEYGISAEVP- 78 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHH---HHHHHHhhcccccceecCCC-
Confidence 46999999999999999999999999999999985433322 2 1211111100 000001100 0000000
Q ss_pred CEEeccCcceec--HHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCcc
Q 011835 178 PILIGRAYGRVS--RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLL 251 (476)
Q Consensus 178 ~~~~~~~~~~i~--r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~ 251 (476)
.+.+..-..+.+ -..+...+...++.+||+++......+. ++ .+.|...+.++++++.+|+|||+......
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~-~v~V~~~~~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PH-TVEVTGEDKETITADNIIIATGSRPRIPP 151 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CC-EEEEcCCCceEEEeCEEEEcCCCCCcCCC
Confidence 000100000000 1223344444556679999955555444 22 44554433478999999999998875443
No 182
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.91 E-value=1.5e-08 Score=107.12 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec--Cce-EEEC-ceEEEccCCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HDM-IVPC-RLATVASGAASG 248 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~--~g~-~i~a-~~vV~A~G~~S~ 248 (476)
..|...|.+.+++.|++++ +++|+++..+++++++|... ++. ++++ +.||+|+|.++.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4466788889999999999 99999998765545556543 333 5788 999999999985
No 183
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.91 E-value=6.6e-09 Score=94.60 Aligned_cols=109 Identities=25% Similarity=0.282 Sum_probs=70.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC-CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
||+||||||||+++|..|++.|++|+|+|+..... ....++...+.. ..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~------------------------------~~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVE------------------------------IA 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHH------------------------------HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccc------------------------------cc
Confidence 79999999999999999999999999998755211 001110000000 00
Q ss_pred ecHHHHH--H--HHHHHHHHCCCeEE-EEEEEEEEEcCCc----eEEE---EecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLH--E--ELLRRCVESGVSYL-SSKVESITESTSG----HRLV---ACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~--~--~L~~~~~~~gv~i~-~~~v~~i~~~~~~----~~~v---~~~~g~~i~a~~vV~A~G~~S 247 (476)
.....+. + .+.+.+...+++++ ++++.+++..... .+.+ ...++.++.+|.||+|+|..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 51 PHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred ccccccccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 0011111 1 44555667899998 9999999887762 1122 233557899999999999654
No 184
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.5e-09 Score=100.21 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=85.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEE-CCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLI-GPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~li-E~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
..|||+||||||||.++|++.+|+|++.-|+ ||-- -+.++.++++..|. -+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG---------GQvldT~~IENfIs-------------------v~ 261 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG---------GQVLDTMGIENFIS-------------------VP 261 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC---------Ceeccccchhheec-------------------cc
Confidence 5699999999999999999999999999887 5421 12233333332221 11
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc--CCceEEEEecCceEEECceEEEccCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITES--TSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
......|...|.++.++..|++. -.+++.+++. +++...|.+.+|-.++++-||+|||+.=
T Consensus 262 --~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 262 --ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred --cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 13556789999999999999999 7789998874 2337889999999999999999999754
No 185
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=1e-08 Score=103.31 Aligned_cols=135 Identities=18% Similarity=0.100 Sum_probs=86.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEE----ec
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPIL----IG 182 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 182 (476)
..+|+|||||||||++|..|.+.|++|+++||...++.-|......- ......++......+..-... +.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~------~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE------VVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc------ccccchhhhhhccCChhhhcCCCCCCc
Confidence 35999999999999999999999999999999887665443210000 000011111111111000000 00
Q ss_pred --cCcceecHHHHHHHHHHHHHHCCC--eEE-EEEEEEEEEcCCceEEEEecCc----eEEECceEEEccCCCC
Q 011835 183 --RAYGRVSRHLLHEELLRRCVESGV--SYL-SSKVESITESTSGHRLVACEHD----MIVPCRLATVASGAAS 247 (476)
Q Consensus 183 --~~~~~i~r~~l~~~L~~~~~~~gv--~i~-~~~v~~i~~~~~~~~~v~~~~g----~~i~a~~vV~A~G~~S 247 (476)
.+....++..+.+.|...+++.++ .|. +++|..++...++.+.|.+.++ ++.-+|.||+|+|-+.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 011124667899999999998886 466 8888888887734677777654 3566999999999875
No 186
>PLN02487 zeta-carotene desaturase
Probab=98.90 E-value=1.7e-06 Score=90.55 Aligned_cols=209 Identities=11% Similarity=-0.037 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcC--Cc---eEEEEe---cCceEEECceEEEccCCCCCC-ccccccCC----
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITEST--SG---HRLVAC---EHDMIVPCRLATVASGAASGK-LLEYEVGG---- 257 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~---~~~v~~---~~g~~i~a~~vV~A~G~~S~~-~~~~~~~~---- 257 (476)
.|.+.+.+.+++.|++|+ ++.|..|..+. ++ +..|.+ .+++++.+|.||.|.+.+... +..-....
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~ 375 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFF 375 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHH
Confidence 366777888899999999 99999999873 32 456666 334578999999999977531 11110000
Q ss_pred ---CcccceeEEEEEEEeeCCCCCCCc-------eeeeccCCCCCCCccccCCCCCeEEEEE----Ec-----CCceEEE
Q 011835 258 ---PKVSVQTAYGVEVEVENNPYDPSL-------MVFMDYRDCTKQEVPSFESDNPTFLYVM----PM-----SSTRVFF 318 (476)
Q Consensus 258 ---~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~-----~~~~~~~ 318 (476)
..........+...++.+...+.. ..+...... -+.......|+..+ |. ..+. .+
T Consensus 376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~-----~~~~~~~~~f~~di~l~~~~~~~~~~~g~-~l 449 (569)
T PLN02487 376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNL-----LYSADADFSCFADLALTSPEDYYKEGEGS-LI 449 (569)
T ss_pred hHHhcCCCeeEEEEEEEeccccccccccccccccccccccccc-----ccccCCCcceEeeeecCCHHHHcccCCce-EE
Confidence 001123334444443321111110 001000000 00000001111111 10 0111 12
Q ss_pred Eeecc--cCCCCCChHHHHHHHHHHHHHcCCcccc--ee-----EEEEEEeeC----CCCCCC---CCCCeeEeccccCc
Q 011835 319 EETCL--ASKDGLPFDILKKKLMARLERLGIQVLK--TY-----EEEWSYIPV----GGSLPN---TEQRNLAFGAAASM 382 (476)
Q Consensus 319 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-----~~~~~~~p~----~~~~~~---~~~rv~liGDAAh~ 382 (476)
..... .....++.+++.+.+.+.+..+.+.... +. .+....+.. ....|. .-.|+++.||--..
T Consensus 450 ~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~ 529 (569)
T PLN02487 450 QAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQ 529 (569)
T ss_pred EEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCccccc
Confidence 22111 1223456788888887777665443221 12 111111111 111121 12799999998877
Q ss_pred cCCcchHHHHHHHHhHHHHHHHHHHHh
Q 011835 383 VHPATGYSVVRSLSEAPNYASAIAYIL 409 (476)
Q Consensus 383 ~~P~~G~G~~~Al~da~~la~~l~~~l 409 (476)
-.|. ++.-|+.++..+|+.|.+..
T Consensus 530 ~yPa---t~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 530 DYID---SMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCcc---hHHHHHHHHHHHHHHHHHHh
Confidence 7774 88889999999999887765
No 187
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.89 E-value=1.2e-08 Score=106.88 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=82.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc---------hHHHHhc-----Cc--chhhh
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW---------EDEFRDL-----GL--EGCIE 163 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~---------~~~l~~~-----~~--~~~~~ 163 (476)
+.++||||||+|.|||+||+.++ .|.+|+||||......+. |++ ...+.++ ++ ...+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 45689999999999999999997 499999999976433211 221 1111111 11 11111
Q ss_pred h---------hc-ccceeeeCC-CCCEEe----ccCcce------ecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcC
Q 011835 164 H---------VW-RDTVVYIDE-DEPILI----GRAYGR------VSRHLLHEELLRRCVE-SGVSYL-SSKVESITEST 220 (476)
Q Consensus 164 ~---------~~-~~~~~~~~~-~~~~~~----~~~~~~------i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~ 220 (476)
. .| ....+.++. ...... +..... -....+...|.+.+.+ .||+++ ++.++++..++
T Consensus 86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~ 165 (553)
T PRK07395 86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence 0 01 111111211 100000 000000 1235677788888765 499999 99999998763
Q ss_pred --CceEEEEec-Cce--EEECceEEEccCCCCC
Q 011835 221 --SGHRLVACE-HDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 221 --~~~~~v~~~-~g~--~i~a~~vV~A~G~~S~ 248 (476)
+.+++|... +|. .+.|+.||+|||..+.
T Consensus 166 ~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 166 ETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 335555443 443 4789999999999764
No 188
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.89 E-value=2.7e-09 Score=110.32 Aligned_cols=147 Identities=16% Similarity=0.275 Sum_probs=91.3
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
..|+|++ .|+. +|.....++++.++..+.+......... ......+. .....+|+||||||+|+++
T Consensus 93 ~grvC~~--~Ce~----~C~~~~~~~~v~I~~l~r~~~~~~~~~~------~~~~~~~~--~~~~~~V~IIGaG~aGl~a 158 (485)
T TIGR01317 93 TGRVCPA--PCEG----ACTLGISEDPVGIKSIERIIIDKGFQEG------WVQPRPPS--KRTGKKVAVVGSGPAGLAA 158 (485)
T ss_pred HhCcCCh--hhHH----hccCCCCCCCcchhHHHHHHHHHHHHcC------CCCCCCCc--CCCCCEEEEECCcHHHHHH
Confidence 3688887 4877 9999988889999876665432111100 00000011 1234699999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|..|++.|++|+|+|+....... ..++.+...++...+. ...+.++
T Consensus 159 A~~L~~~g~~V~v~e~~~~~gG~---------------------------------l~~gip~~~~~~~~~~-~~~~~~~ 204 (485)
T TIGR01317 159 ADQLNRAGHTVTVFEREDRCGGL---------------------------------LMYGIPNMKLDKAIVD-RRIDLLS 204 (485)
T ss_pred HHHHHHcCCeEEEEecCCCCCce---------------------------------eeccCCCccCCHHHHH-HHHHHHH
Confidence 99999999999999986632210 0011111123333333 3356677
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+.||+++ ++.+. .+.. .++....+|.||+|+|++.
T Consensus 205 ~~Gv~~~~~~~v~-~~~~---------~~~~~~~~d~VilAtGa~~ 240 (485)
T TIGR01317 205 AEGIDFVTNTEIG-VDIS---------ADELKEQFDAVVLAGGATK 240 (485)
T ss_pred hCCCEEECCCEeC-CccC---------HHHHHhhCCEEEEccCCCC
Confidence 7899999 87763 1110 0112356899999999874
No 189
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.89 E-value=5.4e-07 Score=93.09 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCeEE-EEEEEEEEEcC--Cc---eEEEEecCc---eEEECceEEEccCCCC
Q 011835 193 LHEELLRRCVESGVSYL-SSKVESITEST--SG---HRLVACEHD---MIVPCRLATVASGAAS 247 (476)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~--~~---~~~v~~~~g---~~i~a~~vV~A~G~~S 247 (476)
+.+.|.+.+++.|++|+ +++|++|..++ ++ ++.|.+.+| +++.+|.||.|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 55667788888999999 99999998754 22 445556544 5689999999999776
No 190
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.88 E-value=4.7e-08 Score=102.97 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec-Cc--eEEECc-eEEEccCCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPCR-LATVASGAASG 248 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-~g--~~i~a~-~vV~A~G~~S~ 248 (476)
.+...|.+.+++.|++++ +++|+.+..+++++++|... ++ ..+.++ .||+|+|....
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 356677788888999999 99999999876656666553 34 357886 69999998875
No 191
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.88 E-value=9e-07 Score=91.29 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecCce-----EEECceEEEccCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDM-----IVPCRLATVASGAAS 247 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~g~-----~i~a~~vV~A~G~~S 247 (476)
.+.+.|.+.+++.|++|+ +++|++|...+++ +++|.+.+++ ++.+|.||.|...+.
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 355667777777899999 9999999875554 5567776654 789999999997654
No 192
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.3e-09 Score=105.64 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=92.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC----CC-------CcccchHHHHhcCcchhhhhhcccc----ee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF----TN-------NYGVWEDEFRDLGLEGCIEHVWRDT----VV 171 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~----~~-------~~G~~~~~l~~~~~~~~~~~~~~~~----~~ 171 (476)
.|||+|||||.||+.||++++|.|.+++|+--.... .+ .-|....+++.||= ......+.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG--~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGG--LMGKAADKAGIQFRM 81 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccc--hHHHhhhhcCCchhh
Confidence 489999999999999999999999999999432211 11 11233444444432 111111111 11
Q ss_pred eeCCCCCEEeccCcceecHHHHHHHHHHHHHH-CCCeEEEEEEEEEEEcCC-ceEEEEecCceEEECceEEEccCCCCC
Q 011835 172 YIDEDEPILIGRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESITESTS-GHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~i~~~~v~~i~~~~~-~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.-....+.. ..+-..+++..+.+.+.+.++. .+++++...|+++..+++ .+++|.+.+|..+.|+.||++||.+-.
T Consensus 82 LN~sKGPAV-ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 82 LNSSKGPAV-RAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred ccCCCcchh-cchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 111111111 1122357888888888888854 478888889999988666 489999999999999999999997664
No 193
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.87 E-value=4.4e-08 Score=103.20 Aligned_cols=35 Identities=40% Similarity=0.469 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.++||||||+|.|||+||+.+++.|++|+||||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35899999999999999999999999999999977
No 194
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.86 E-value=2.8e-08 Score=105.13 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC--ce-EEECc-eEEEccCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--DM-IVPCR-LATVASGAAS 247 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~--g~-~i~a~-~vV~A~G~~S 247 (476)
.+...|.+.+++.|++++ ++.|+++..+++.+++|.+.+ +. .+.++ .||+|+|.++
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 466678888888999999 999999998766556666543 33 47775 7999999988
No 195
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=4.6e-08 Score=103.58 Aligned_cols=142 Identities=17% Similarity=0.137 Sum_probs=81.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc------------hHHHHhc-----Cc--chhh
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW------------EDEFRDL-----GL--EGCI 162 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~------------~~~l~~~-----~~--~~~~ 162 (476)
.+||||||+|+|||+||+.+++.|++|+||||......+. |++ ...+.++ ++ ...+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 3599999999999999999999999999999866432111 110 0111110 11 1111
Q ss_pred hhh---------c-ccceeeeCC--CCCEEe---c-cCc------ceecHHHHHHHHHHHHHHCC----CeEE-EEEEEE
Q 011835 163 EHV---------W-RDTVVYIDE--DEPILI---G-RAY------GRVSRHLLHEELLRRCVESG----VSYL-SSKVES 215 (476)
Q Consensus 163 ~~~---------~-~~~~~~~~~--~~~~~~---~-~~~------~~i~r~~l~~~L~~~~~~~g----v~i~-~~~v~~ 215 (476)
... | ....+.++. ...... + ... +......+...|.+.+.+.+ |+++ ++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 100 1 111122211 000000 0 000 01134557777777776543 8888 999999
Q ss_pred EEEcC-CceEEEEec---Cc--eEEECceEEEccCCCCC
Q 011835 216 ITEST-SGHRLVACE---HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 216 i~~~~-~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~ 248 (476)
+..++ +.+++|... ++ ..+.|+.||+|||..+.
T Consensus 163 Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 163 AVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 98754 446666653 23 35789999999999885
No 196
>PRK13748 putative mercuric reductase; Provisional
Probab=98.86 E-value=1.7e-08 Score=106.98 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=32.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
...|||+||||||+|+++|..|++.|.+|+|||+.
T Consensus 96 ~~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 96 ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 35699999999999999999999999999999986
No 197
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.85 E-value=4.1e-08 Score=85.61 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=74.7
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCcEEEECCCCCC-CCCcccc--hHHHHhcCcchhhhhhc----ccceeeeCCCCC
Q 011835 111 VVIGCGPAGLALAAESAKL-----GLNVGLIGPDLPF-TNNYGVW--EDEFRDLGLEGCIEHVW----RDTVVYIDEDEP 178 (476)
Q Consensus 111 vIIGgG~aGl~~A~~La~~-----G~~V~liE~~~~~-~~~~G~~--~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~ 178 (476)
+||||||+|++++..|.+. ..+|+|||+.... +..|.-. ...+-+.... .+...- ....-|......
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~-~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPAD-QMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhccccc-ccccccccCCCCHHHHHHhcCc
Confidence 6999999999999999988 5789999995432 1222211 1111111000 000000 000001111110
Q ss_pred --EEeccCcceecHHHHHHHHHHHHH------HCCCeEE--EEEEEEEEEcCCceEEEEecCceEEECceEEEccCC
Q 011835 179 --ILIGRAYGRVSRHLLHEELLRRCV------ESGVSYL--SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (476)
Q Consensus 179 --~~~~~~~~~i~r~~l~~~L~~~~~------~~gv~i~--~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~ 245 (476)
.....+...+.|..+-+.|.+.+. ..|+++. ..+|+++...++ ...|.+.+|..+.+|.||+|+|.
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~-~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD-GYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC-cEEEEECCCCEEEeCEEEECCCC
Confidence 000111123566544444443332 2466655 789999999888 46788899999999999999993
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.84 E-value=4e-08 Score=101.55 Aligned_cols=130 Identities=20% Similarity=0.290 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---cc-chHHHH-hcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---GV-WEDEFR-DLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G~-~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
|||+||||||||+++|..|++.|++|+|||+ ...+..| |. ....+. ...+...+.. .....+.. . .. .
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~-~~~~g~~~--~-~~--~ 74 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKH-AKDYGIEV--E-NV--S 74 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHH-HHhcCCCC--C-CC--c
Confidence 7999999999999999999999999999998 4333222 21 111111 0000000000 00000000 0 00 0
Q ss_pred cCccee-c-----HHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCC
Q 011835 183 RAYGRV-S-----RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAAS 247 (476)
Q Consensus 183 ~~~~~i-~-----r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S 247 (476)
.++..+ . ...+...+...+++.|++++..++..++ .. .+.|...+| .++++|.||+|+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~-~~~v~~~~g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PG-TVLVTGENGEETLTAKNIIIATGSRP 143 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CC-EEEEecCCCcEEEEeCEEEEcCCCCC
Confidence 000001 0 1122333445566789999855555443 22 456665554 5799999999999765
No 199
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.84 E-value=7.7e-08 Score=101.08 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec-Cce--EEEC-ceEEEccCCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HDM--IVPC-RLATVASGAASG 248 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-~g~--~i~a-~~vV~A~G~~S~ 248 (476)
.|...|.+.+++.||+++ +++|+++..+++.+++|... ++. .+.+ +.||+|+|.++.
T Consensus 218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 355677888888999999 99999998765546666443 342 4566 689999999985
No 200
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.84 E-value=1.3e-08 Score=105.05 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
|||+||||||||+++|..|++.|++|+|||++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 201
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.84 E-value=2.6e-08 Score=103.83 Aligned_cols=59 Identities=14% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecC-c--eEEECceEEEccCCCCC
Q 011835 190 RHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH-D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 190 r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~-g--~~i~a~~vV~A~G~~S~ 248 (476)
...+...|.+.+.+. ||+++ ++.|+++..+++.+++|.+.+ + ..+.|+.||+|+|..+.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 356788888888764 89999 999999876655455665533 2 26899999999999874
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.83 E-value=1.2e-08 Score=105.29 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=71.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--CCcc-cchHHHHh-cCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYG-VWEDEFRD-LGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~~~G-~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
+|+||||||||+++|..|++.|.+|+|||+....+ -+.| +..+.+-. ..+...+.. .....+....... ..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~---~~~ 77 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKK-ANHFGITLPNGSI---SID 77 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHH-HHhcCccccCCCC---ccC
Confidence 79999999999999999999999999999864221 1112 12111110 000000000 0000000000000 001
Q ss_pred ccee-c-H----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCC
Q 011835 185 YGRV-S-R----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i-~-r----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~ 248 (476)
+..+ . + ..+.+.+...++..|++++..++..++. . .+.|...++ .++++|.||+|||+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~-~v~v~~~~~~~~~~~d~lviATGs~p~ 145 (458)
T PRK06912 78 WKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--H-RVRVEYGDKEEVVDAEQFIIAAGSEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--C-EEEEeeCCCcEEEECCEEEEeCCCCCC
Confidence 1101 1 1 1122333444566799999666655542 2 456665555 47999999999998763
No 203
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.83 E-value=5.6e-08 Score=101.92 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=83.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----cccc---------hHHHHhc-----Cc--chhhhh
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFRDL-----GL--EGCIEH 164 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~~---------~~~l~~~-----~~--~~~~~~ 164 (476)
..+||+|||+|+|||+||+.+++. .+|+|+||......+ -|++ ...+.++ ++ ...+..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 458999999999999999999987 899999997643221 1111 1111111 11 111110
Q ss_pred h---------c-ccceeeeCCCC------CEEe----ccCcce------ecHHHHHHHHHHHHHHC-CCeEE-EEEEEEE
Q 011835 165 V---------W-RDTVVYIDEDE------PILI----GRAYGR------VSRHLLHEELLRRCVES-GVSYL-SSKVESI 216 (476)
Q Consensus 165 ~---------~-~~~~~~~~~~~------~~~~----~~~~~~------i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i 216 (476)
. | ....+.+.... .... +..... -....+...|.+.+.+. ||+++ ++.++++
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 0 1 11111111100 0000 000000 12356778888888654 89999 9999998
Q ss_pred EEcC------CceEEEEec---Cc--eEEECceEEEccCCCCCC
Q 011835 217 TEST------SGHRLVACE---HD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 217 ~~~~------~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~~ 249 (476)
..++ +.+++|.+. ++ ..+.++.||+|||.++..
T Consensus 166 i~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 166 ITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred eecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 8653 445666543 34 368999999999998854
No 204
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=2.7e-08 Score=102.87 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
.|||+||||||||++||+.|++.|.+|+|||+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 489999999999999999999999999999985
No 205
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=4.6e-08 Score=102.93 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec-Cc--eEEEC-ceEEEccCCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-HD--MIVPC-RLATVASGAASG 248 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-~g--~~i~a-~~vV~A~G~~S~ 248 (476)
.|...|.+.+++.|++++ +++|+++..+++.+++|... +| ..+.+ +.||+|+|..+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 456677788888999999 99999999876656666553 34 35778 479999999985
No 206
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.82 E-value=5.7e-08 Score=102.52 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=78.9
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCcEEEECCCCCCCCCc---c---cch------------HHHHh-----cCc--c
Q 011835 109 DLVVIGCGPAGLALAAESA----KLGLNVGLIGPDLPFTNNY---G---VWE------------DEFRD-----LGL--E 159 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La----~~G~~V~liE~~~~~~~~~---G---~~~------------~~l~~-----~~~--~ 159 (476)
||||||+|.|||+||+.++ +.|.+|+|+||......+. | +.. +.++. .++ .
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~ 80 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE 80 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence 8999999999999999998 7899999999965432221 2 110 00100 011 0
Q ss_pred hhhhhh---------c-ccceeeeC----CCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC---C
Q 011835 160 GCIEHV---------W-RDTVVYID----EDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITEST---S 221 (476)
Q Consensus 160 ~~~~~~---------~-~~~~~~~~----~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~---~ 221 (476)
..+... | ....+.++ .+....-+..........+.+.+...+.+.+++++ ++.++++..++ +
T Consensus 81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G 160 (614)
T TIGR02061 81 DLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN 160 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC
Confidence 011000 0 01111110 11000000000001123445555556666778999 99999999764 3
Q ss_pred ceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 222 GHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 222 ~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
.+++|.. .+| ..+.|+.||+|||.++..
T Consensus 161 rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 161 RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred eEEEEEEEEeCCCcEEEEECCEEEECCCccccc
Confidence 4556554 344 367999999999998753
No 207
>PRK12839 hypothetical protein; Provisional
Probab=98.81 E-value=7.2e-08 Score=101.58 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC-CceEEEEec--Cce-EE-ECceEEEccCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACE--HDM-IV-PCRLATVASGAASG 248 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~v~~~--~g~-~i-~a~~vV~A~G~~S~ 248 (476)
...|...|.+.+++.|++++ ++.|+++..++ +++++|... +++ .+ .++.||+|+|.++.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 44567778888999999999 99999998753 446666543 343 34 45899999999985
No 208
>PLN02268 probable polyamine oxidase
Probab=98.80 E-value=3e-06 Score=86.93 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=34.9
Q ss_pred CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 204 SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
.+++++ +++|+.|...++ .+.|++.+|+++.||.||+|.-..
T Consensus 209 ~~~~i~~~~~V~~i~~~~~-~v~v~~~~g~~~~ad~VIva~P~~ 251 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYN-GVKVTVEDGTTFVADAAIIAVPLG 251 (435)
T ss_pred ccCceeCCCeeEEEEEcCC-cEEEEECCCcEEEcCEEEEecCHH
Confidence 356788 999999998877 577888888889999999998544
No 209
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.80 E-value=6.6e-09 Score=111.24 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=88.3
Q ss_pred CccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHHH
Q 011835 44 SYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLALA 123 (476)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~A 123 (476)
.|+||+ .|+. .|.....++++.++..+.+......... ....+... .....+|+|||||||||++|
T Consensus 144 grvC~~--~Ce~----~C~r~~~~~~v~i~~l~r~~~~~~~~~~-------~~~~~~~~-~~~~k~VaIIGaGpAGl~aA 209 (652)
T PRK12814 144 GRICPA--PCEE----ACRRHGVDEPVSICALKRYAADRDMESA-------ERYIPERA-PKSGKKVAIIGAGPAGLTAA 209 (652)
T ss_pred eCCcCc--hhhH----HHcCCCCCCCcchhHHHHHHHHHHHhcC-------cccCCCCC-CCCCCEEEEECCCHHHHHHH
Confidence 789998 4886 7887777777777755554322111000 00011111 12346999999999999999
Q ss_pred HHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHHH
Q 011835 124 AESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCVE 203 (476)
Q Consensus 124 ~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~ 203 (476)
+.|++.|++|+|||+....+... .++.+...+... +.+...+.+.+
T Consensus 210 ~~La~~G~~Vtv~e~~~~~GG~l---------------------------------~~gip~~~~~~~-~~~~~~~~l~~ 255 (652)
T PRK12814 210 YYLLRKGHDVTIFDANEQAGGMM---------------------------------RYGIPRFRLPES-VIDADIAPLRA 255 (652)
T ss_pred HHHHHCCCcEEEEecCCCCCcee---------------------------------eecCCCCCCCHH-HHHHHHHHHHH
Confidence 99999999999999876432110 001111112233 33444566778
Q ss_pred CCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 204 SGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 204 ~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.|++++ ++.+. . .+.+.+. ...+|.||+|+|++..
T Consensus 256 ~Gv~i~~~~~v~-~--------dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 256 MGAEFRFNTVFG-R--------DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred cCCEEEeCCccc-C--------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 899998 66441 1 1112221 1358999999998754
No 210
>PRK07208 hypothetical protein; Provisional
Probab=98.80 E-value=2.6e-06 Score=88.51 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceE-EEEec--Cc--eEEECceEEEccCCCC
Q 011835 192 LLHEELLRRCVESGVSYL-SSKVESITESTSGHR-LVACE--HD--MIVPCRLATVASGAAS 247 (476)
Q Consensus 192 ~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~-~v~~~--~g--~~i~a~~vV~A~G~~S 247 (476)
.|.+.|.+.+.+.|++|+ +++|+.|..++++.+ .+... +| .++.||.||.|.-...
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 466677788888899999 999999999877533 33332 34 3689999999887553
No 211
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.80 E-value=3.6e-08 Score=101.75 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCC---Cccc-chHHHH-hcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN---NYGV-WEDEFR-DLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~---~~G~-~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
.||+||||||+|+.+|..|++.|.+|+|+|+.. .+. ++|. +.+.+- ...+...+.. .....+........ .
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~--~ 77 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRR-AAELGIRFIDDGEA--R 77 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHH-HHhCCcccccCccc--c
Confidence 389999999999999999999999999999864 222 2222 111111 0000000000 00000000000000 0
Q ss_pred cCcceec------HHHHHHHHHHHHHHCCCeEEEEEEEEEE--EcCCceEEEEecCce--EEECceEEEccCCCCC
Q 011835 183 RAYGRVS------RHLLHEELLRRCVESGVSYLSSKVESIT--ESTSGHRLVACEHDM--IVPCRLATVASGAASG 248 (476)
Q Consensus 183 ~~~~~i~------r~~l~~~L~~~~~~~gv~i~~~~v~~i~--~~~~~~~~v~~~~g~--~i~a~~vV~A~G~~S~ 248 (476)
..+..+. ...+.+.+.+.++..||+++..+++.++ .+++ .+.|...+|+ ++.+|.||+|||+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~-~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPH-RVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCC-EEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 0111010 0122344556677789999966666654 3333 5667766664 7999999999998764
No 212
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.80 E-value=3.3e-08 Score=102.31 Aligned_cols=135 Identities=23% Similarity=0.185 Sum_probs=71.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCc-chhhhhh--------------ccccee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGL-EGCIEHV--------------WRDTVV 171 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~-~~~~~~~--------------~~~~~~ 171 (476)
+|||+|||+||+|+.+|+.|++.|.+|+|||+..+..... ...+...|+ .+|++.. .....+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~---~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGT---RWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCc---ceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 4899999999999999999999999999999743210000 000111122 1222210 000000
Q ss_pred eeCCCCCEEeccCcceec--HHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCC
Q 011835 172 YIDEDEPILIGRAYGRVS--RHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAAS 247 (476)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~--r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S 247 (476)
.........+..-....+ ...+.+.+...++..||+++......++. . .+.|...+| .++++|.||+|||+..
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~-~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--H-RIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--C-EEEEeccCCCceEEEeCEEEEecCCCC
Confidence 000000000000000000 02234445556677899999666655543 2 355544344 4799999999999765
No 213
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=2.3e-08 Score=103.21 Aligned_cols=33 Identities=48% Similarity=0.736 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
.|||+||||||+|+++|..|++.|++|+|||++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 489999999999999999999999999999983
No 214
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.80 E-value=3.9e-08 Score=101.62 Aligned_cols=34 Identities=38% Similarity=0.540 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEECCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 139 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~liE~~ 139 (476)
.+|||+||||||+|+.+|+.+++. |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 358999999999999999999997 9999999974
No 215
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.80 E-value=4.8e-08 Score=101.95 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
.++||||||+| |||++|+.+++.|.+|+||||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999 999999999999999999998764
No 216
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=91.29 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=73.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc------------cc------------chHHHHhcCcchhhhh
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY------------GV------------WEDEFRDLGLEGCIEH 164 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~------------G~------------~~~~l~~~~~~~~~~~ 164 (476)
+|+|||+||||++||+.|+..|++|+|+||......+. |- +.+.+.+-|+ -.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl----V~ 78 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL----VD 78 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc----ee
Confidence 79999999999999999999999999999976544221 10 1111212122 12
Q ss_pred hcccceeeeCCCC--CEEeccCcceec-HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceE
Q 011835 165 VWRDTVVYIDEDE--PILIGRAYGRVS-RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLA 239 (476)
Q Consensus 165 ~~~~~~~~~~~~~--~~~~~~~~~~i~-r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~v 239 (476)
.|......+.... ......+|.... -..|.+. + ....++. +++|+.+...++ .+.+++++| +...+|.|
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~----L-AtdL~V~~~~rVt~v~~~~~-~W~l~~~~g~~~~~~d~v 152 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKF----L-ATDLTVVLETRVTEVARTDN-DWTLHTDDGTRHTQFDDV 152 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHH----H-hccchhhhhhhhhhheecCC-eeEEEecCCCcccccceE
Confidence 2211111111110 000001121111 1123222 2 2356777 999999998855 899999776 56689999
Q ss_pred EEccC
Q 011835 240 TVASG 244 (476)
Q Consensus 240 V~A~G 244 (476)
|+|-=
T Consensus 153 vla~P 157 (331)
T COG3380 153 VLAIP 157 (331)
T ss_pred EEecC
Confidence 99864
No 217
>PLN02576 protoporphyrinogen oxidase
Probab=98.78 E-value=2.9e-06 Score=88.57 Aligned_cols=38 Identities=32% Similarity=0.340 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCcEEEECCCCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFT 143 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~liE~~~~~~ 143 (476)
..+||+|||||++||++|+.|+++ |++|+|+|+....+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 457999999999999999999999 99999999876443
No 218
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.77 E-value=1e-07 Score=99.15 Aligned_cols=33 Identities=45% Similarity=0.605 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
.|||+||||||||+++|..|+++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 219
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.77 E-value=1.5e-07 Score=99.59 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCeEE-EEEEEEEEEcC-CceEEEEec-Cc--eEEECc-eEEEccCCCCC
Q 011835 193 LHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACE-HD--MIVPCR-LATVASGAASG 248 (476)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~v~~~-~g--~~i~a~-~vV~A~G~~S~ 248 (476)
+...|.+.+++.|++|+ +++++.+..++ +++++|... ++ ..+.|+ .||+|+|.++.
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 44456777888899999 99999999864 346666553 33 357887 69999999984
No 220
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.76 E-value=6.7e-08 Score=102.56 Aligned_cols=35 Identities=34% Similarity=0.537 Sum_probs=32.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
..+|||+||||||+|+++|+.+++.|.+|+|||++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45799999999999999999999999999999974
No 221
>PRK14727 putative mercuric reductase; Provisional
Probab=98.75 E-value=6.3e-08 Score=100.36 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~ 143 (476)
..++||+||||||+|+++|..|++.|.+|+|+|+....+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G 52 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG 52 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence 345899999999999999999999999999999875444
No 222
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.75 E-value=5.4e-08 Score=98.42 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--cEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~--~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.+|||||||+||+++|..|++.|. +|+|+++.....- ...+....+.. ... ..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~--------------------~~~----~~ 59 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLE--------------------DSP----QL 59 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCC--------------------CCc----cc
Confidence 479999999999999999999987 7999987653221 11111000000 000 00
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
..+.. .+...+.||+++ ++.|+.++.+.. .|.+.+|.++.+|.||+|||+...
T Consensus 60 -~~~~~-------~~~~~~~~i~~~~g~~V~~id~~~~---~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 60 -QQVLP-------ANWWQENNVHLHSGVTIKTLGRDTR---ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred -cccCC-------HHHHHHCCCEEEcCCEEEEEECCCC---EEEECCCCEEEcCEEEEccCCCCC
Confidence 00111 122345799999 889999987653 456678888999999999998864
No 223
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.75 E-value=5.8e-08 Score=108.64 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=71.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
..+||+|||||||||+||+.|++.|++|+|+|+........- . ... ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~--~-----------------------~~~-------~~ 209 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL--S-----------------------EAE-------TI 209 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee--c-----------------------ccc-------cc
Confidence 358999999999999999999999999999998764321110 0 000 00
Q ss_pred ceecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEE-e--------c---Cc--eEEECceEEEccCCCCC
Q 011835 186 GRVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVA-C--------E---HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~-~--------~---~g--~~i~a~~vV~A~G~~S~ 248 (476)
...+...+...+.+++... +++++ +++|.++..... +..+. . . .+ .++.+|.||+|||+...
T Consensus 210 ~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~-v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 210 DGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNT-VGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCe-EEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 0123344545566666655 59999 899988754221 11111 0 0 01 26899999999998753
No 224
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.75 E-value=1e-07 Score=100.80 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC-ce--EEEC-ceEEEccCCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH-DM--IVPC-RLATVASGAASG 248 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-g~--~i~a-~~vV~A~G~~S~ 248 (476)
..|...|.+.+++.||+++ ++.|+++..+++.+++|.+.+ ++ ++.+ +.||+|+|.++.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 3467778899999999999 999999987655566666543 32 5776 789999999986
No 225
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.74 E-value=5e-08 Score=96.98 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=62.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC------cc-----c---chHHHHhcCcchhhhhhcccceeee
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN------YG-----V---WEDEFRDLGLEGCIEHVWRDTVVYI 173 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~------~G-----~---~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (476)
.||+|||||++|+.+|+.|++.|++|+|+|+.+..... ++ . ....+...|+...-...+.... +
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~--~ 80 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLI--M 80 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchh--e
Confidence 48999999999999999999999999999975443110 10 0 0111222232211111111111 1
Q ss_pred CCCCCEEe-ccCcceecHHHHHHHHHHHHHH-CCCeEEEEEEEEEE
Q 011835 174 DEDEPILI-GRAYGRVSRHLLHEELLRRCVE-SGVSYLSSKVESIT 217 (476)
Q Consensus 174 ~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~-~gv~i~~~~v~~i~ 217 (476)
........ ...+-.++|..+.+.|.+.+++ .+++++..+|+++.
T Consensus 81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 11100000 0111257999999999999865 47888866777664
No 226
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.74 E-value=5.7e-08 Score=99.08 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=75.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
+..+|||||||.||+.+|..|.+.+++|+|||+...+.-. ..+... ..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~-----~~l~~~---------------------------~~ 56 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFT-----PLLPQT---------------------------TT 56 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchh-----hhHHHh---------------------------cc
Confidence 4469999999999999999998878999999986532110 001000 00
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEe--------cCceEEECceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVAC--------EHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~--------~~g~~i~a~~vV~A~G~~S 247 (476)
+..+...+..-+.+.+...|++++..+|++|+.+++ .+.+.. .+|.++.+|.+|+|+|+..
T Consensus 57 g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~-~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 57 GTLEFRSICEPVRPALAKLPNRYLRAVVYDVDFEEK-RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred cCCChHHhHHHHHHHhccCCeEEEEEEEEEEEcCCC-EEEEecccccccccCCceEecCCEEEECCCccc
Confidence 123334444445666666788888889999998776 444421 3567899999999999875
No 227
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=6.7e-08 Score=100.07 Aligned_cols=55 Identities=13% Similarity=0.024 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGA 245 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~ 245 (476)
..|.+.|.+.+++.|++|+ +++|+.|..++++.+++...+|..+++|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 5688999999999999999 999999999988667788777767899999988775
No 228
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.74 E-value=6.1e-08 Score=96.96 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=73.9
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 109 DLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~---G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
+|||||||+||+.+|..|.++ +++|+|||+.....-.. .....+ .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~~~-------------------------------~ 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPGMI-------------------------------A 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhHHH-------------------------------h
Confidence 489999999999999999644 68999999865321100 000000 0
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
+.+....+...+.+.+++.|++++..+|+.++.+++ .|.+.+|+++++|.||+|+|+...
T Consensus 49 g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~---~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 49 GHYSLDEIRIDLRRLARQAGARFVIAEATGIDPDRR---KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred eeCCHHHhcccHHHHHHhcCCEEEEEEEEEEecccC---EEEECCCCcccccEEEEccCCCCC
Confidence 123334444445666777899999778999988765 577778888999999999997763
No 229
>PRK13984 putative oxidoreductase; Provisional
Probab=98.74 E-value=2e-08 Score=107.07 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=90.0
Q ss_pred CCCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHH
Q 011835 42 HSSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLA 121 (476)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~ 121 (476)
.-.|+||+ .|+. +|++...++++.++..+.+..+...... ........ ......+|+|||+||||++
T Consensus 231 ~~g~vC~~--~Ce~----~C~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~v~IIGaG~aGl~ 297 (604)
T PRK13984 231 VCGRVCTH--KCET----VCSIGHRGEPIAIRWLKRYIVDNVPVEK------YSEILDDE-PEKKNKKVAIVGSGPAGLS 297 (604)
T ss_pred hhhCcCCc--hHHH----hhcccCCCCCeEeCcHHHHHHhHHHHcC------cccccCCC-cccCCCeEEEECCCHHHHH
Confidence 34689987 4887 9999877778888755543322110000 00000000 0134568999999999999
Q ss_pred HHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHH
Q 011835 122 LAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRC 201 (476)
Q Consensus 122 ~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~ 201 (476)
+|..|++.|++|+|||+........ .++.+...+... +.....+.+
T Consensus 298 aA~~L~~~G~~v~vie~~~~~gG~~---------------------------------~~~i~~~~~~~~-~~~~~~~~~ 343 (604)
T PRK13984 298 AAYFLATMGYEVTVYESLSKPGGVM---------------------------------RYGIPSYRLPDE-ALDKDIAFI 343 (604)
T ss_pred HHHHHHHCCCeEEEEecCCCCCceE---------------------------------eecCCcccCCHH-HHHHHHHHH
Confidence 9999999999999999866322110 001111112222 233335667
Q ss_pred HHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 202 VESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 202 ~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
++.|++++ ++.|.. + +...+ ....+|.||+|+|++...
T Consensus 344 ~~~gv~~~~~~~v~~-----~----~~~~~-~~~~yD~vilAtGa~~~r 382 (604)
T PRK13984 344 EALGVKIHLNTRVGK-----D----IPLEE-LREKHDAVFLSTGFTLGR 382 (604)
T ss_pred HHCCcEEECCCEeCC-----c----CCHHH-HHhcCCEEEEEcCcCCCc
Confidence 78899999 877631 0 11111 124799999999986433
No 230
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.74 E-value=1.1e-07 Score=108.13 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~ 142 (476)
..++||||||+|.||++||+.+++.|.+|+|+||....
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 34689999999999999999999999999999997644
No 231
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.73 E-value=1.5e-07 Score=99.78 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=29.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
|+|||+|+|||+||+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999976
No 232
>PRK07846 mycothione reductase; Reviewed
Probab=98.73 E-value=3.6e-08 Score=101.22 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC--CCccc-chHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGV-WEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~--~~~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
|||+||||||+|.++|.. +.|.+|+|||++.-.+ -++|. +.+.+.... ..+........+-..... . ...
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a--~~~~~~~~~~~~g~~~~~-~--~~~ 74 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAA--DVARTIREAARLGVDAEL-D--GVR 74 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHH--HHHHHHHHHHhCCccCCC-C--cCC
Confidence 899999999999998876 4699999999854211 12222 222211100 000000000000000000 0 001
Q ss_pred cce-ecH-HHHHHHH-----HHH-HHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 185 YGR-VSR-HLLHEEL-----LRR-CVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~-i~r-~~l~~~L-----~~~-~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+.. +.+ ....+.+ ... ++..||+++..++..++ + ..|.+.+|+++++|.||+|||+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~---~~V~v~~g~~~~~d~lViATGs~p 140 (451)
T PRK07846 75 WPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--P---KTLRTGDGEEITADQVVIAAGSRP 140 (451)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--C---CEEEECCCCEEEeCEEEEcCCCCC
Confidence 110 111 1111122 222 55679999955555542 2 245556677899999999999765
No 233
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.73 E-value=8.3e-08 Score=95.23 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecC---c--eEEECceEEEccCCCCCCccccccCCCccc
Q 011835 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEH---D--MIVPCRLATVASGAASGKLLEYEVGGPKVS 261 (476)
Q Consensus 189 ~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~---g--~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~ 261 (476)
+-..+.-.+.--+..+|..+. ..+|.++..++++ +.++.+.| | .+|+|+.||.|||..+-.++.+.......-
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i 301 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPI 301 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCce
Confidence 344555666666677899999 6699999888775 44555544 3 478999999999999976776664433323
Q ss_pred ceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc---CCCCCChHHHHHHH
Q 011835 262 VQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA---SKDGLPFDILKKKL 338 (476)
Q Consensus 262 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 338 (476)
.....|+.+.++. -|.|+.+.+++.... .+..++.+|.... ...|.+-.. ...+.|.++-.+.+
T Consensus 302 ~~pSsGvHIVlP~-yY~P~~mGlldP~Ts-----------DgRViFflPWqg~-TIaGTTD~pt~v~~~P~PtE~dIqfI 368 (680)
T KOG0042|consen 302 CVPSSGVHIVLPG-YYCPENMGLLDPKTS-----------DGRVIFFLPWQGK-TIAGTTDIPTSVTHSPTPTEDDIQFI 368 (680)
T ss_pred eccCCceeEEccc-ccCCcccccccCCCC-----------CCcEEEEeccCCc-eeeccCCCCCCCCCCCCCCHHHHHHH
Confidence 4455777776653 567777777765432 2345777888653 455554222 12334444444444
Q ss_pred HHHHHH
Q 011835 339 MARLER 344 (476)
Q Consensus 339 ~~~~~~ 344 (476)
.+.+..
T Consensus 369 L~ev~~ 374 (680)
T KOG0042|consen 369 LKEVQH 374 (680)
T ss_pred HHHHHH
Confidence 444433
No 234
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.72 E-value=3.1e-08 Score=104.68 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=88.9
Q ss_pred CCccceeeecccCCCCccccccccccchhcCCcceeeeccccCcchhhhhhhccCCCCCCCCCCcccEEEECCCHHHHHH
Q 011835 43 SSYKVTARATSNNAGSESCVAVKEEDYIKAGGSQLVFVQMQQNKSMDKQSKLADKLPPISIGNGILDLVVIGCGPAGLAL 122 (476)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~~ 122 (476)
-.|+|++ .|+. .|.......++.+.+.+....+...... ..++........+|+|||+||+||++
T Consensus 88 ~grvc~~--~ce~----~C~r~~~~~~v~i~~l~r~~~~~~~~~~---------~~~~~~~~~~g~~V~VIGaGpaGL~a 152 (564)
T PRK12771 88 MGRVCYH--PCES----GCNRGQVDDAVGINAVERFLGDYAIANG---------WKFPAPAPDTGKRVAVIGGGPAGLSA 152 (564)
T ss_pred hhCcCCc--hhHH----hccCCCCCCCcCHHHHHHHHHHHHHHcC---------CCCCCCCCCCCCEEEEECCCHHHHHH
Confidence 3689988 5887 8988877777777755443221110000 00010001234589999999999999
Q ss_pred HHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcceecHHHHHHHHHHHHH
Q 011835 123 AAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV 202 (476)
Q Consensus 123 A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~ 202 (476)
|..|++.|++|+|+|+....+.. ..++.+...+.+..+... .+.+.
T Consensus 153 A~~l~~~G~~V~v~e~~~~~GG~---------------------------------l~~gip~~~~~~~~~~~~-l~~~~ 198 (564)
T PRK12771 153 AYHLRRMGHAVTIFEAGPKLGGM---------------------------------MRYGIPAYRLPREVLDAE-IQRIL 198 (564)
T ss_pred HHHHHHCCCeEEEEecCCCCCCe---------------------------------eeecCCCccCCHHHHHHH-HHHHH
Confidence 99999999999999987643211 011112223444444444 45567
Q ss_pred HCCCeEE-EEEE-EEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 203 ESGVSYL-SSKV-ESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 203 ~~gv~i~-~~~v-~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
+.|+++. ++.+ .++..+. ....+|+||+|+|+...
T Consensus 199 ~~Gv~~~~~~~~~~~~~~~~-----------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 199 DLGVEVRLGVRVGEDITLEQ-----------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred HCCCEEEeCCEECCcCCHHH-----------HHhhCCEEEEeeCCCCC
Confidence 7899988 7655 3322110 01247999999998764
No 235
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.72 E-value=1.2e-07 Score=95.39 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=78.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||+.|+.+|..|++.|.+|+|+++.......
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence 47999999999999999999999999999886532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.....+...+.+.+++.||+++ +++++++..+++ .+.+.+.+|+++.+|.||.|+|..+.
T Consensus 180 ~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 180 LMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS-GIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred hCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC-EEEEEEcCCcEEECCEEEECcCCCcc
Confidence 1112355666777888999999 999999987655 56778888989999999999997663
No 236
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.71 E-value=5.3e-06 Score=83.48 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLP 141 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~ 141 (476)
.|+|||||++||++|+.|+|.+ .+|+|+|++..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 5999999999999999999999 99999999753
No 237
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.71 E-value=1.1e-06 Score=88.56 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=56.9
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
.+.++...+...|.+.+.+ |++++ +++|++++.+++ .+.|.+.+|.+++||.||+|+|.++..+..
T Consensus 129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~ 195 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-GWQLLDANGEVIAASVVVLANGAQAGQLAQ 195 (381)
T ss_pred CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-eEEEEeCCCCEEEcCEEEEcCCcccccccc
Confidence 3578999999999999988 99999 999999998766 577888888779999999999999976544
No 238
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.70 E-value=5.4e-07 Score=83.32 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=98.2
Q ss_pred ecHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCCCcccceeEEE
Q 011835 188 VSRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGGPKVSVQTAYG 267 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~~~~~~~~~~g 267 (476)
.....+...|.+++.+.|+++...+|++++.-.+ -.+|+||.|+|-++.++.+-. ...+..|
T Consensus 148 sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~------------~~~DVivNCtGL~a~~L~gDd------~~yPiRG 209 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTENGVEFVQRRVESLEEVAR------------PEYDVIVNCTGLGAGKLAGDD------DLYPIRG 209 (342)
T ss_pred ccchhhhHHHHHHHHhcCcEEEEeeeccHHHhcc------------CCCcEEEECCccccccccCCc------ceeeccc
Confidence 4557788999999999999999888888765321 358999999999997776433 2445677
Q ss_pred EEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeeccc--CCCCCChHHHHHHHHHHHHHc
Q 011835 268 VEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLA--SKDGLPFDILKKKLMARLERL 345 (476)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 345 (476)
....++.+ .- ..+ .+.+ ... -|++|..+. +.+|.+... +......++. ..+.+++..+
T Consensus 210 qVl~V~Ap-Wv---khf-~~~D------------~~~-ty~iP~~~~-V~lGg~~Q~g~w~~ei~~~D~-~dIl~rc~aL 269 (342)
T KOG3923|consen 210 QVLKVDAP-WV---KHF-IYRD------------FSR-TYIIPGTES-VTLGGTKQEGNWNLEITDEDR-RDILERCCAL 269 (342)
T ss_pred eEEEeeCC-ce---eEE-EEec------------CCc-cEEecCCce-EEEccccccCcccCcCChhhH-HHHHHHHHHh
Confidence 77777632 11 111 1111 111 277887764 555543222 2222223333 3333333344
Q ss_pred CCcc--cceeEEEEEEeeCCCCCC------CCC-CCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHh
Q 011835 346 GIQV--LKTYEEEWSYIPVGGSLP------NTE-QRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYIL 409 (476)
Q Consensus 346 ~~~~--~~~~~~~~~~~p~~~~~~------~~~-~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l 409 (476)
.|.+ .+++.+..++.|...... ... .+..+|=+-. ++|.|++.+-..|.-++..+..++
T Consensus 270 ~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYG-----HgG~G~Tl~wGtAlea~~Lv~~~l 337 (342)
T KOG3923|consen 270 EPSLRHAEIIREWVGLRPGRKQVRLEAELRTRGGKRLTVVHNYG-----HGGNGFTLGWGTALEAAKLVLDAL 337 (342)
T ss_pred CcccccceehhhhhcccCCCCceeeeeeeecCCCccceeEeecc-----CCCCceecccchHHHHHHHHHHHh
Confidence 3333 355665566666543321 112 2333454433 446666555555555555554443
No 239
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.69 E-value=2.1e-07 Score=88.70 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=79.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc---c-cchHHH-HhcCcchhhhh-hcccceeeeCCCCCE
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEF-RDLGLEGCIEH-VWRDTVVYIDEDEPI 179 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~---G-~~~~~l-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 179 (476)
.++||+|||+||+|..||+.+++.|++.+.+|++...+.+| | +..+.| ....+.....+ ..... + +
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~r------G--i 109 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASR------G--I 109 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhc------C--c
Confidence 46999999999999999999999999999999977655443 1 121111 11111111100 00000 0 0
Q ss_pred EeccCcceecH-----------HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCC
Q 011835 180 LIGRAYGRVSR-----------HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAA 246 (476)
Q Consensus 180 ~~~~~~~~i~r-----------~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~ 246 (476)
... ...+++ ..|...+....++++|+++......+.+ . .+.+.-.|| .+++++.+|+|||+-
T Consensus 110 ~vs--~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p--~-~V~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 110 DVS--SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP--N-KVSVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred ccc--ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCC--c-eEEEeccCCCceEEeeeeEEEEeCCc
Confidence 000 001222 3455555556677788887333333332 2 466666666 578999999999975
Q ss_pred CCCccccc
Q 011835 247 SGKLLEYE 254 (476)
Q Consensus 247 S~~~~~~~ 254 (476)
-..+.++.
T Consensus 185 V~~~PGI~ 192 (506)
T KOG1335|consen 185 VTPFPGIT 192 (506)
T ss_pred cCCCCCeE
Confidence 54444443
No 240
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.68 E-value=4.2e-07 Score=90.60 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCC-CCCc
Q 011835 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAA-SGKL 250 (476)
Q Consensus 189 ~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~-S~~~ 250 (476)
....|.+.|.+.+++.|++++ +++|+++..+++++..|.+.++ .+++||.||+|+|++ |..+
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence 346788889999999999999 8899999988775666666665 479999999999999 8544
No 241
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.68 E-value=1.7e-07 Score=94.78 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=77.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||+.|+.+|..|++.|.+|+|+|+.......
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR------------------------------------------ 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh------------------------------------------
Confidence 47999999999999999999999999999986532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.....+.+.+.+.+++.||+++ ++++++++. ++ .+.+.+.+|+++.+|.||.|+|....
T Consensus 183 ~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~-~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 183 NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GE-KVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CC-EEEEEECCCCEEECCEEEECCCCChh
Confidence 1122355666777788999999 999999876 33 46677888889999999999997663
No 242
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.67 E-value=1.2e-07 Score=97.13 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=66.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHH--cCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEecc
Q 011835 106 GILDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~--~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
...+|+||||||||++||..|++ .|++|+|||+.+.. +|.. .++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p---gGlv------------------------------r~gv 71 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP---FGLV------------------------------RSGV 71 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC---cceE------------------------------eecc
Confidence 34689999999999999999997 79999999987632 2210 0010
Q ss_pred -CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 184 -AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 184 -~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
|.. -....+...+.+.+...+++++ +..+- ..+.+.+-. ..+|.||+|+|+.....+.++
T Consensus 72 aP~~-~~~k~v~~~~~~~~~~~~v~~~~nv~vg---------~dvtl~~L~-~~yDaVIlAtGa~~~~~l~Ip 133 (491)
T PLN02852 72 APDH-PETKNVTNQFSRVATDDRVSFFGNVTLG---------RDVSLSELR-DLYHVVVLAYGAESDRRLGIP 133 (491)
T ss_pred CCCc-chhHHHHHHHHHHHHHCCeEEEcCEEEC---------ccccHHHHh-hhCCEEEEecCCCCCCCCCCC
Confidence 001 1112234444555666889988 76551 123333322 368999999998754444443
No 243
>PLN02676 polyamine oxidase
Probab=98.66 E-value=9.4e-06 Score=84.09 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=36.2
Q ss_pred CeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 206 VSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 206 v~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
..|+ +++|++|..+++ .+.|.+.+|++++||.||+|......
T Consensus 245 ~~I~l~~~V~~I~~~~~-gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 245 PRLKLNKVVREISYSKN-GVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred CceecCCEeeEEEEcCC-cEEEEECCCCEEEeCEEEEccChHHh
Confidence 5688 999999999877 67888999989999999999986553
No 244
>PRK09897 hypothetical protein; Provisional
Probab=98.66 E-value=3.2e-07 Score=95.12 Aligned_cols=137 Identities=13% Similarity=0.186 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCCCC--ccc-c-hHH-HHhc---Cc--chhhhhhcccce--eee
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNN--YGV-W-EDE-FRDL---GL--EGCIEHVWRDTV--VYI 173 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~--~G~-~-~~~-l~~~---~~--~~~~~~~~~~~~--~~~ 173 (476)
.+|+||||||+|+++|..|.+.+ ++|+|||+....+.. |.. . ... +-.. .+ .......|.... .++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999999865 589999996544322 221 0 010 1010 00 011111221110 000
Q ss_pred C--CCCCEEec-cCcc--eecHHHHH---HHHHHHHHHCC--CeEE-EEEEEEEEEcCCceEEEEecC-ceEEECceEEE
Q 011835 174 D--EDEPILIG-RAYG--RVSRHLLH---EELLRRCVESG--VSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATV 241 (476)
Q Consensus 174 ~--~~~~~~~~-~~~~--~i~r~~l~---~~L~~~~~~~g--v~i~-~~~v~~i~~~~~~~~~v~~~~-g~~i~a~~vV~ 241 (476)
. ........ ..+. .+....|. ..+.+.+.+.| ++++ +++|+++..+++ .+.|.+.+ +..+.+|.||+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~-g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA-GVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC-EEEEEECCCCeEEEcCEEEE
Confidence 0 00000000 0110 11111122 22344455666 6787 889999988776 56677655 47899999999
Q ss_pred ccCC
Q 011835 242 ASGA 245 (476)
Q Consensus 242 A~G~ 245 (476)
|+|.
T Consensus 161 AtGh 164 (534)
T PRK09897 161 ATGH 164 (534)
T ss_pred CCCC
Confidence 9994
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.66 E-value=1e-07 Score=98.03 Aligned_cols=107 Identities=18% Similarity=0.299 Sum_probs=69.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 109 DLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
+|||||||+||+++|..|++.+ .+|+|||+.....- .+++ . + ... ..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~----------~------------~-------~~~-~~ 51 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGL----------P------------Y-------FVG-GF 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCC----------c------------e-------Eec-cc
Confidence 6999999999999999999985 58999998763210 0000 0 0 000 00
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe-cCceEEE--CceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC-EHDMIVP--CRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~-~~g~~i~--a~~vV~A~G~~S 247 (476)
.-....+.....+.+.+.|++++ +++|+.++.+++ .+.+.. .++.+++ +|.+|+|+|+..
T Consensus 52 -~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~-~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 52 -FDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK-TITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred -cCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC-EEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 00111222223445667899998 999999988765 444432 2255566 999999999765
No 246
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.65 E-value=1.9e-07 Score=93.47 Aligned_cols=34 Identities=32% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
.||+|||||++|+.+|+.|++.|++|+|||+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3899999999999999999999999999997554
No 247
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.64 E-value=2.2e-07 Score=95.14 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEc--CCceEEEEecC-ceEEECceEEEccCCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITES--TSGHRLVACEH-DMIVPCRLATVASGAASG 248 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~--~~~~~~v~~~~-g~~i~a~~vV~A~G~~S~ 248 (476)
..+.+.|.+.+++.|++++ +++|+++..+ ++.+++|...+ +.++.++.||+|+|.++.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 4688889999999999999 9999999876 33345555443 358999999999998774
No 248
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.63 E-value=9.9e-07 Score=86.50 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccCC---CcccceeEE
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVGG---PKVSVQTAY 266 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~~---~~~~~~~~~ 266 (476)
..+.+.+.+.+++.|++++ +++|++++..++....|.+++|.++.+|.||+|.|..++.+....... ....-....
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~dI 252 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPFDI 252 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccccCCeeE
Confidence 5677888999999999999 999999999887678899999999999999999995555433222111 011112356
Q ss_pred EEEEEeeCCCCCC
Q 011835 267 GVEVEVENNPYDP 279 (476)
Q Consensus 267 g~~~~~~~~~~~~ 279 (476)
|+.++.+..-.++
T Consensus 253 GVRvE~p~~vmd~ 265 (486)
T COG2509 253 GVRVEHPQSVMDP 265 (486)
T ss_pred EEEEecchHhhCc
Confidence 7777766544444
No 249
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=4.7e-07 Score=100.58 Aligned_cols=36 Identities=36% Similarity=0.340 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
..+||+|||||.|||+||+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 458999999999999999999999999999999764
No 250
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.60 E-value=7.9e-07 Score=90.15 Aligned_cols=96 Identities=26% Similarity=0.350 Sum_probs=80.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.++|||||+.|+-.|..+++.|.+|+|+|+...+...
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~------------------------------------------ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG------------------------------------------ 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc------------------------------------------
Confidence 47999999999999999999999999999997743221
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCce--EEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDM--IVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~--~i~a~~vV~A~G~~S 247 (476)
.++ ++.+.+.+.+++.|++++ +++++.++..+++ +.+.+++|. ++++|.|+.|+|...
T Consensus 212 ~D~-ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 212 EDP-EISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred CCH-HHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 233 467777888877889999 9999999998874 888888775 789999999999665
No 251
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.3e-07 Score=92.48 Aligned_cols=141 Identities=21% Similarity=0.279 Sum_probs=89.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-C-----CCcc-----cchHHHHhcCcchhhhhhcccc----
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-T-----NNYG-----VWEDEFRDLGLEGCIEHVWRDT---- 169 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-~-----~~~G-----~~~~~l~~~~~~~~~~~~~~~~---- 169 (476)
...|||||||||-||.-+|.++++.|.+.+|+-..... + ..+| ....+++.+ .+......+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDAL--dGl~~rvcD~s~vq~ 103 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL--DGLCSRVCDQSGVQY 103 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhh--cchHhhhhhhhhhhH
Confidence 35689999999999999999999999999999653211 1 1121 222223322 11111111111
Q ss_pred eeeeCCCCCEEeccCcceecHHHHHHHHHHHHH-HCCCeEEEEEEEEEEEcCCc-----eEEEEecCceEEECceEEEcc
Q 011835 170 VVYIDEDEPILIGRAYGRVSRHLLHEELLRRCV-ESGVSYLSSKVESITESTSG-----HRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~i~~~~v~~i~~~~~~-----~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.+.-...++..++.. ..++|..+...+.+.+. ..+.+|+...|.++...+.+ +.+|.+.||..+.|+.||+.|
T Consensus 104 k~LNrs~GPAVwg~R-AQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTT 182 (679)
T KOG2311|consen 104 KVLNRSKGPAVWGLR-AQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTT 182 (679)
T ss_pred HHhhccCCCcccChH-HhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEee
Confidence 111111222222221 25888888888888773 34788887788887665432 578889999999999999999
Q ss_pred CCCCC
Q 011835 244 GAASG 248 (476)
Q Consensus 244 G~~S~ 248 (476)
|.+-+
T Consensus 183 GTFL~ 187 (679)
T KOG2311|consen 183 GTFLR 187 (679)
T ss_pred cccee
Confidence 97653
No 252
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.58 E-value=3.1e-07 Score=91.00 Aligned_cols=141 Identities=23% Similarity=0.294 Sum_probs=86.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC-CCCc----ccc---------hHHHHh-----cCc--chhhhhh--
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF-TNNY----GVW---------EDEFRD-----LGL--EGCIEHV-- 165 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~-~~~~----G~~---------~~~l~~-----~~~--~~~~~~~-- 165 (476)
||+|||+|.|||++|+.|++. ++|+|+-|.... .+++ |+. ...+.+ -|+ +..+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999775533 2221 331 111111 122 1111110
Q ss_pred --------cccceeeeCCCCC--EEeccCcc----------eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCc-
Q 011835 166 --------WRDTVVYIDEDEP--ILIGRAYG----------RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSG- 222 (476)
Q Consensus 166 --------~~~~~~~~~~~~~--~~~~~~~~----------~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~- 222 (476)
.-...+.|+.... ..++...+ --....+...|.+++.+ .+|+++ ++.+.++..+++.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 1112233332221 22221111 02346788888888865 799999 8899999888773
Q ss_pred eEEEEecCc----eEEECceEEEccCCCCCCc
Q 011835 223 HRLVACEHD----MIVPCRLATVASGAASGKL 250 (476)
Q Consensus 223 ~~~v~~~~g----~~i~a~~vV~A~G~~S~~~ 250 (476)
..+|.+.+. .++.++.||+|||..+...
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 336665432 5789999999999888543
No 253
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.57 E-value=6.7e-07 Score=92.42 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
..|+|||||+.|+.+|..|++.|.+|+|+|+.......
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------------------------------ 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 58999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++. .+...|.+.+++.||+++ +++|+.++.+++ .+.+.+.+|+++++|.||.|+|..+.
T Consensus 214 ~d~-~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 214 LDD-EISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred CCH-HHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eEEEEECCCCEEEeCEEEEeecCCcc
Confidence 222 245566777788899999 999999987655 46666777888999999999997763
No 254
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.57 E-value=5.2e-07 Score=90.68 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCCC-CcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTN-NYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.+|||||||+||+.+|..|.+.+ .+|+||+++....- ...+ ...+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l-~~~~~------------------------------ 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDL-SHVFS------------------------------ 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcC-cHHHh------------------------------
Confidence 38999999999999999998864 57999987653211 1000 00000
Q ss_pred cceecHHHHHH-HHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 185 YGRVSRHLLHE-ELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 185 ~~~i~r~~l~~-~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+......+.. ...+.+++.|++++ +++|++++.+.. .|.+ ++.++.+|.||+|+|+..
T Consensus 52 -~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~---~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 -QGQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ---VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred -CCCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC---EEEE-CCeEEeCCEEEECCCCCC
Confidence 0122222222 23344567899999 999999987654 3333 567899999999999765
No 255
>PRK06116 glutathione reductase; Validated
Probab=98.56 E-value=6.8e-07 Score=92.05 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=78.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+-+|..|++.|.+|+++++...+...
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------------------------------ 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------------------------------
Confidence 48999999999999999999999999999876532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|++++.++++.+.+.+.+|+++.+|.||+|+|....
T Consensus 206 ~~-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 206 FD-PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred cC-HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 12 2345566777888999999 999999987665446677788888999999999997653
No 256
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.56 E-value=4.4e-07 Score=92.99 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=68.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCC-CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 109 DLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
+|||||||+||+.+|..|++. +++|+|||++.... ..+++.. .+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~-~~~------------------------------- 50 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY-YIG------------------------------- 50 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcch-hhc-------------------------------
Confidence 799999999999999999987 68899999875322 1111100 000
Q ss_pred cee-cHHHHHHHH-HHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC-c--eEEECceEEEccCCCCC
Q 011835 186 GRV-SRHLLHEEL-LRRCVESGVSYL-SSKVESITESTSGHRLVACEH-D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 186 ~~i-~r~~l~~~L-~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-g--~~i~a~~vV~A~G~~S~ 248 (476)
+.+ .+..+.... .+...+.|++++ +++|++++.+++ .+.+...+ + .++.+|.+|+|+|+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 51 EVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQ-TVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CccCCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCCC-EEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 000 111111111 122345799998 899999998776 45444322 2 24689999999998763
No 257
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.55 E-value=4e-07 Score=94.81 Aligned_cols=143 Identities=27% Similarity=0.350 Sum_probs=83.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-----ccc--------------hHHHHhc-----Cc--
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVW--------------EDEFRDL-----GL-- 158 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~-----G~~--------------~~~l~~~-----~~-- 158 (476)
..++||||||||.|||.||+.+++.|++|+|+||..+...+. |++ ......+ ++
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 456899999999999999999999999999999976543210 110 0011111 11
Q ss_pred chhhhhhccc----------ceee---eCCCCC--EEec-----c-Ccc-eecHHHHHHHHHHHHHH-CCCeEE-EEEEE
Q 011835 159 EGCIEHVWRD----------TVVY---IDEDEP--ILIG-----R-AYG-RVSRHLLHEELLRRCVE-SGVSYL-SSKVE 214 (476)
Q Consensus 159 ~~~~~~~~~~----------~~~~---~~~~~~--~~~~-----~-~~~-~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~ 214 (476)
++.+....+. .... ..++.. ..++ + .+. .-.-..+...|.+++.+ .+++++ +..++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 1122111111 0001 111100 0000 0 110 11235577777888866 677888 99999
Q ss_pred EEEEcCCc-eEEE---EecCc--eEEECceEEEccCCCC
Q 011835 215 SITESTSG-HRLV---ACEHD--MIVPCRLATVASGAAS 247 (476)
Q Consensus 215 ~i~~~~~~-~~~v---~~~~g--~~i~a~~vV~A~G~~S 247 (476)
++..++++ +.++ ...+| ..+.++.||+|||...
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 99877554 3333 34455 3678999999999877
No 258
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.55 E-value=9.5e-07 Score=90.79 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=77.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||..|+-+|..|++.|.+|+|+++.......
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------------------------------ 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------------------------------
Confidence 48999999999999999999999999999986532211
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~ 248 (476)
++. .+.+.+.+.+++.||+++ ++.|+.+..++++.+.+.+.+| +++.+|.||.|+|....
T Consensus 205 ~d~-~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 205 FDS-MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred cCH-HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 222 245566777788999999 9999999876543466777777 67999999999997764
No 259
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=7.7e-07 Score=91.98 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=76.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||++|+.+|..|++.|.+|+|+|+.......
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 208 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------------------------------ 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------------------------------
Confidence 58999999999999999999999999999986532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|++++.+++ .+.+.+.+| .++.+|.||+|+|..+.
T Consensus 209 ~~-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 209 ED-AEVSKVVAKALKKKGVKILTNTKVTAVEKNDD-QVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 12 2345556677788899999 999999987665 455666666 57999999999997663
No 260
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.55 E-value=3.1e-05 Score=81.13 Aligned_cols=206 Identities=14% Similarity=0.072 Sum_probs=115.1
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---Cc--eEEECceEEEccCCCCCCccccccCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HD--MIVPCRLATVASGAASGKLLEYEVGGP 258 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g--~~i~a~~vV~A~G~~S~~~~~~~~~~~ 258 (476)
.+.++...+...+.+.+.+.|++++ +++|+++..++++++.|.+. +| .+++|+.||.|+|.++..+......
T Consensus 122 dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~-- 199 (516)
T TIGR03377 122 DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL-- 199 (516)
T ss_pred CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC--
Confidence 3578999999999999999999999 99999999877655556553 23 3789999999999999766543321
Q ss_pred cccceeEEEEEEEeeCCCCCCCceeeeccCCCCCCCccccCCCCCeEEEEEEcCCceEEEEeecccCC---CCCChHHHH
Q 011835 259 KVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPMSSTRVFFEETCLASK---DGLPFDILK 335 (476)
Q Consensus 259 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~ 335 (476)
........|..+.++.. ... ..+... ...... .+++|. ++...+|.+..... +.....+..
T Consensus 200 ~~~i~p~kG~~lv~~~~-~~~--~~~~~~----------~~~~~g--~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~v 263 (516)
T TIGR03377 200 DIRMFPAKGALLIMNHR-INN--TVINRC----------RKPSDA--DILVPG-DTISIIGTTSERIDDPDDLPVTQEEV 263 (516)
T ss_pred CCceecceEEEEEECCc-ccc--cccccc----------cCCCCC--cEEEEC-CCeEEEecCCCCCCCCCCCCCCHHHH
Confidence 12334455666655421 111 111000 011111 246786 45667776543211 111222333
Q ss_pred HHHHHHHHHcCCc--ccceeEEEEEEeeCCCCCC-----CCCCCeeEeccc-----cCccCCcchHHHHHHHHhHHHHHH
Q 011835 336 KKLMARLERLGIQ--VLKTYEEEWSYIPVGGSLP-----NTEQRNLAFGAA-----ASMVHPATGYSVVRSLSEAPNYAS 403 (476)
Q Consensus 336 ~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~-----~~~~rv~liGDA-----Ah~~~P~~G~G~~~Al~da~~la~ 403 (476)
+.+.+.+..+-+. ..+++....+..|+..... ......++++++ .++++-++|. .+.+-.-|..+.+
T Consensus 264 ~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk-ltt~r~~Ae~~~d 342 (516)
T TIGR03377 264 DVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK-LTTYRLMAEWATD 342 (516)
T ss_pred HHHHHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch-HHHHHHHHHHHHH
Confidence 4444444444332 3455555666667533211 112244555532 4455555554 5555555555566
Q ss_pred HHHHHh
Q 011835 404 AIAYIL 409 (476)
Q Consensus 404 ~l~~~l 409 (476)
.+.+.+
T Consensus 343 ~~~~~l 348 (516)
T TIGR03377 343 VVCKKL 348 (516)
T ss_pred HHHHHc
Confidence 665554
No 261
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.55 E-value=5.5e-07 Score=84.44 Aligned_cols=35 Identities=37% Similarity=0.466 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..+||+|||+|.|||.+|.+|+..|.+|+|+|+..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 45899999999999999999999999999998754
No 262
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.54 E-value=1.1e-06 Score=86.93 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred eecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecC-----ceEEECceEEEccCCCCCCccc
Q 011835 187 RVSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~-----g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
.|+-..|.+.|.+.+.+. |++++ +++|+++...+++.+.|.+.| ..+++|+.|++..|++|..+++
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLq 249 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQ 249 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHH
Confidence 467788999999998766 99999 999999999988767777642 3689999999999999965554
No 263
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.54 E-value=2e-07 Score=95.85 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=27.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|||+|||+||+|..+|.. +.|.+|+|||++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999998654 4799999999854
No 264
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.53 E-value=1.4e-05 Score=78.93 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...||||||+|.+||++|+.|.|.|++|+|+|.+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~ 40 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD 40 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccC
Confidence 45799999999999999999999999999999654
No 265
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.53 E-value=9.1e-07 Score=91.48 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+-+|..|++.|.+|+|+++.+.....
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------------------------------ 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc---eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g---~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|++++.+++ .+.+.+.++ +++.+|.||.|+|..+.
T Consensus 211 ~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 211 ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 12 2345566677788999999 999999987665 456666555 67999999999997663
No 266
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.53 E-value=1.2e-06 Score=90.19 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEc-CC--c-eEEEEec-Cc--e---EEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITES-TS--G-HRLVACE-HD--M---IVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~--~-~~~v~~~-~g--~---~i~a~~vV~A~G~~S 247 (476)
..|..-|.+.+++.||+++ +++|+++..+ ++ + +.+|.+. +| + ....|+||+|+|+..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 5677888888999999999 9999999985 22 2 4556554 22 2 346899999999776
No 267
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.52 E-value=4.2e-07 Score=99.48 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=70.9
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCcEEEECCCCCCC-CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 110 LVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~---G~~V~liE~~~~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
|||||||+||+.+|..|.+. +++|+|||+.+... +..++ ...+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L-~~~l~------------------------------- 48 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILL-SSVLQ------------------------------- 48 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccc-cHHHC-------------------------------
Confidence 69999999999999998875 47899998766422 11111 00000
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
+..+...+.....+.+++.||+++ +++|+.++.+.. .|.+.+|.++.+|.||+|||+..
T Consensus 49 g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k---~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 49 GEADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQK---QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCC---EEEECCCcEeeCCEEEECCCCCc
Confidence 011222222223445567899999 999999987654 56677888899999999999765
No 268
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=5.6e-07 Score=89.12 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=79.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
..|||||||.+|+.+|..|.+.- .+|+|||+..-..- ...+ +....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~-----~plL---------------------------~eva~ 51 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF-----TPLL---------------------------YEVAT 51 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc-----chhh---------------------------hhhhc
Confidence 47999999999999999999985 89999998763211 1111 11112
Q ss_pred ceecHHHHHHHHHHHHHHCC-CeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESG-VSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~g-v~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
|.++...+..-+.+.+...+ |+++..+|++|+.+.. .|.+.++.++.+|.+|+|.|+...
T Consensus 52 g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k---~V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 52 GTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAK---KVTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred CCCChhheeccHHHHhcccCceEEEEEEEEEEcccCC---EEEeCCCccccccEEEEecCCcCC
Confidence 34556666666677776455 9999999999999876 666777778999999999998774
No 269
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=1.5e-06 Score=90.11 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+.+|..|++.|.+|+|+|+.......
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------ 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence 48999999999999999999999999999886532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc-CCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|+.+... +++...+.+.+| +++.+|.||+|+|....
T Consensus 219 ~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 219 ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 12 2345556677788899999 9999999852 333444445566 47999999999997653
No 270
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.46 E-value=1.9e-06 Score=88.49 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=74.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+.+|..|++.|.+|+|+|+.......
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------------------------------ 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------------------------------
Confidence 47999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|+.++.+++ .+.+. .+++++.+|.||+|+|....
T Consensus 196 ~~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~-~v~v~-~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 196 EE-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGD-QVLVV-TEDETYRFDALLYATGRKPN 254 (438)
T ss_pred CC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCC-EEEEE-ECCeEEEcCEEEEeeCCCCC
Confidence 11 2344556677788999999 999999987554 34444 35678999999999997663
No 271
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.45 E-value=1e-06 Score=96.53 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCcEEEECCCCCCC-CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 108 LDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPFT-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~----G~~V~liE~~~~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
.+|||||+|+||+.+|..|.+. +++|+||++.+... +...++. .+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~-~~~~--------------------------- 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSS-YFSH--------------------------- 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchH-hHcC---------------------------
Confidence 3799999999999999999764 47999998765322 1111100 0000
Q ss_pred cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 183 ~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
-....+.....+.+++.||+++ +++|+.++.+. ..|.+.+|+++.+|.||+|||+..
T Consensus 56 -----~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~---~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 56 -----HTAEELSLVREGFYEKHGIKVLVGERAITINRQE---KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred -----CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC---cEEEECCCcEEECCEEEECCCCCc
Confidence 0111122222344566899999 88999998754 356677888899999999999765
No 272
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.45 E-value=2e-06 Score=88.95 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc---CCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 108 LDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~---G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
-+|+|||||+.|+-+|..++.. |.+|+|+|+.......
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence 4799999999999999766554 9999999986532111
Q ss_pred cceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++ ..+.+.+.+.+++.||+++ ++.++.+..++++...+.+.++.++.+|.||.|+|....
T Consensus 229 ---~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 229 ---FD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred ---cC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 23 3455667777888999999 999999987655445667777788999999999997764
No 273
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.45 E-value=4.1e-06 Score=84.52 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAAS 247 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S 247 (476)
...+.+.|.+.+++.|++++ +++|++++.+++++..+...++ ..+++|.||+|+|...
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 34678888998989999999 9999999987664444444444 4689999999999765
No 274
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.45 E-value=2.1e-06 Score=88.23 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+.+|..|++.|.+|+|+++.......
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------ 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence 47999999999999999999999999999875532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
++ ..+.+.+.+.+++.||+++ +++|+.++.+++ ...+.+.+|+++.+|.||.|+|...
T Consensus 205 ~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 205 FD-DDMRALLARNMEGRGIRIHPQTSLTSITKTDD-GLKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-eEEEEEcCCcEeecCEEEEeeCCCc
Confidence 22 2344556677788999999 999999987655 4566677788899999999999765
No 275
>PLN02507 glutathione reductase
Probab=98.45 E-value=2.2e-06 Score=89.15 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+++...... .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~ 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------------G 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------------c
Confidence 4799999999999999999999999999987552111 1
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|++++.+++ .+.+.+.+|+++.+|.||.|.|..+.
T Consensus 242 ~d-~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 242 FD-DEMRAVVARNLEGRGINLHPRTNLTQLTKTEG-GIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC-eEEEEECCCcEEEcCEEEEeecCCCC
Confidence 22 2345556677788999999 999999987655 45677777888999999999997663
No 276
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.44 E-value=9.1e-07 Score=88.04 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=65.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
..+|+|||||++|+.+|..|++.|++|+|||+......... .+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~---------------------------------~~~~~~ 64 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML---------------------------------FGIPEF 64 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee---------------------------------ecCccc
Confidence 45899999999999999999999999999998664321100 000000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEE---cCCceEEEEec--CceEEECceEEEccCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITE---STSGHRLVACE--HDMIVPCRLATVASGAA 246 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~---~~~~~~~v~~~--~g~~i~a~~vV~A~G~~ 246 (476)
......+.. ..+.+.+.|++++ ++.+..+.. ..+........ ++..+.+|.||+|+|+.
T Consensus 65 ~~~~~~~~~-~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 65 RIPIERVRE-GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred ccCHHHHHH-HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 112222332 3445566799999 877765432 11111211111 12247899999999974
No 277
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.44 E-value=1.7e-06 Score=88.60 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=74.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+.+|..|++.|.+|+++++....... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~-----------------------------------------~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK-----------------------------------------L 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-----------------------------------------c
Confidence 47999999999999999999999999999876532100 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|++++.++. + +.+.+|+++.+|.||.|+|....
T Consensus 177 ~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 177 FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEER--V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC--E-EEEcCCCEEEeCEEEECCCccCC
Confidence 22 2345566777788999999 999999976433 3 55667888999999999997753
No 278
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.44 E-value=2.4e-06 Score=88.25 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=77.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||+|+.|+-+|..|++.|.+|+|+++.......
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 47999999999999999999999999999875532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+. .+...+.+.+++.||+++ +++++.++.+++ .+.+.+.+|+++.+|.||.|+|....
T Consensus 216 ~d~-~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 216 EDA-DAAEVLEEVFARRGMTVLKRSRAESVERTGD-GVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred CCH-HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EEEEEECCCcEEEecEEEEeecCCcC
Confidence 122 244566777788999999 999999987655 45677778888999999999997764
No 279
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=2.5e-06 Score=88.40 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+.+|..|++.|.+|+|+++.+.....
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------------------------------ 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------------------------------
Confidence 48999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC--c--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~--g--~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|+.++.+++ .+.+.+.+ | .++.+|.||+|+|..+.
T Consensus 222 ~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 222 AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 22 3355566677778999999 999999987665 45555544 3 57999999999997663
No 280
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.43 E-value=2.9e-07 Score=67.82 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=28.7
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEECCCCCCC
Q 011835 112 VIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (476)
Q Consensus 112 IIGgG~aGl~~A~~La~~G~~V~liE~~~~~~ 143 (476)
|||||++||++|+.|++.|++|+|+|+.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999987544
No 281
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.43 E-value=2.7e-06 Score=87.71 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||++|+.+|..|++.|.+|+|+++.......
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------ 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------ 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence 47999999999999999999999999999886532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|+.++.+++ .+.+...++ .++.+|.||+|+|..+.
T Consensus 209 ~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~-~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 209 ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKK-QALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCC-EEEEEECCceEEEEeCEEEEecCCccC
Confidence 12 2355666777888999999 999999986654 344433222 46899999999997663
No 282
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.43 E-value=1.3e-06 Score=81.54 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=80.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC-----ccc---chHHHHhcCcchhhh-----------------
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGV---WEDEFRDLGLEGCIE----------------- 163 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~-----~G~---~~~~l~~~~~~~~~~----------------- 163 (476)
.|||||+|.|||+++..+...|-.|+|+|+...++.+ .|| ..+....+.+.+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999988789999997765532 232 122222222211111
Q ss_pred ------------hhcccceeeeC--------CCCCEEeccCccee-c----HHHHHHHHHHHHHHC--CCeEE-EEEEEE
Q 011835 164 ------------HVWRDTVVYID--------EDEPILIGRAYGRV-S----RHLLHEELLRRCVES--GVSYL-SSKVES 215 (476)
Q Consensus 164 ------------~~~~~~~~~~~--------~~~~~~~~~~~~~i-~----r~~l~~~L~~~~~~~--gv~i~-~~~v~~ 215 (476)
-.|-...+-.. ........+..+-+ . -..|...|.+.+.+. -++|. +++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 11211111000 00000000100101 1 122444444444332 27788 999999
Q ss_pred EEEcCCceEEEEecC--c--eEEECceEEEccCCCCC
Q 011835 216 ITESTSGHRLVACEH--D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 216 i~~~~~~~~~v~~~~--g--~~i~a~~vV~A~G~~S~ 248 (476)
+..+++.+.+|.+.| | ..+.++.||.|+|.++.
T Consensus 171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 998877677777654 3 36789999999999884
No 283
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.43 E-value=1.5e-06 Score=95.06 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=77.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+..... .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~-----------------------------------------~ 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK-----------------------------------------Q 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------h
Confidence 47999999999999999999999999999976521100 1
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++. .+...+.+.+++.||+++ ++.++.+..++. ...|.+.||+++.+|.||.|+|....
T Consensus 180 ld~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 180 LDQ-TAGRLLQRELEQKGLTFLLEKDTVEIVGATK-ADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred cCH-HHHHHHHHHHHHcCCEEEeCCceEEEEcCCc-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 222 244556677788999999 999998876543 66788889999999999999997763
No 284
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=2.5e-06 Score=88.18 Aligned_cols=97 Identities=23% Similarity=0.259 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+.+|..|++.|.+|+|+|+.......
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------------------------------ 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 48999999999999999999999999999875521111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec--Cc--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE--HD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~--~g--~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|+.++.+++ .+.+.+. +| +++.+|.||.|+|..+.
T Consensus 211 ~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 211 ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGS-KVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-eEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 22 2355566777888999999 999999987654 4444443 55 47999999999997663
No 285
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.42 E-value=2.5e-06 Score=88.18 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||+|++|+.+|..|++.|.+|+|+++.......
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------ 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence 58999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---CceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---HDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|+.++.+++ ...+.+. +++++.+|.||+|+|..+.
T Consensus 205 ~d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 205 EE-PEISAAVEEALAEEGIEVVTSAQVKAVSVRGG-GKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 12 2244556677778899999 999999987655 4444443 2367999999999997663
No 286
>PRK06370 mercuric reductase; Validated
Probab=98.40 E-value=3.4e-06 Score=87.20 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=73.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+.+|..|++.|.+|+|+++.......
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------ 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence 48999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe--c-CceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--E-HDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~--~-~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|+.++.+++ ...+.+ . ++.++.+|.||.|+|....
T Consensus 210 ~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 210 ED-EDVAAAVREILEREGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 11 2244556677788999999 999999987665 333333 2 3467999999999997663
No 287
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=3.8e-06 Score=86.78 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.......
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------------------------------ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------------------------------ 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999985532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec---C--ceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE---H--DMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~---~--g~~i~a~~vV~A~G~~S 247 (476)
.+. .+.+.+.+.+++.||+++ +++|++++.+++ .+.+.+. + ++++.+|.||.|+|..+
T Consensus 213 ~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 213 TDT-ETAKTLQKALTKQGMKFKLGSKVTGATAGAD-GVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred CCH-HHHHHHHHHHHhcCCEEEECcEEEEEEEcCC-eEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 222 244566777788899999 999999987655 3444332 2 35799999999999765
No 288
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.39 E-value=1.3e-06 Score=88.45 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHH-HHcCCcEEEECCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAES-AKLGLNVGLIGPDLP 141 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~L-a~~G~~V~liE~~~~ 141 (476)
...|+||||||||+.+|..| ++.|++|+|+|+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35799999999999999975 467999999999764
No 289
>PLN02976 amine oxidase
Probab=98.38 E-value=0.00026 Score=79.52 Aligned_cols=35 Identities=29% Similarity=0.541 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...+|+|||||++|+++|+.|++.|++|+|||+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 35799999999999999999999999999999854
No 290
>PRK07846 mycothione reductase; Reviewed
Probab=98.38 E-value=3.7e-06 Score=86.44 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=73.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+.+|..|++.|.+|+|+++.......
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------------------------------ 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------------------------------
Confidence 48999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+.. +.+.+.+. .+.|++++ ++++++++.+++ .+.+.+.+|+++.+|.||.|+|..+.
T Consensus 205 ~d~~-~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~-~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 205 LDDD-ISERFTEL-ASKRWDVRLGRNVVGVSQDGS-GVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred cCHH-HHHHHHHH-HhcCeEEEeCCEEEEEEEcCC-EEEEEECCCcEeecCEEEEEECCccC
Confidence 1221 23333333 34689999 999999987655 56677778888999999999997763
No 291
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=5.7e-06 Score=77.88 Aligned_cols=44 Identities=39% Similarity=0.578 Sum_probs=38.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEC--CCCCCCCCccc
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIG--PDLPFTNNYGV 148 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE--~~~~~~~~~G~ 148 (476)
+.+||++|||||-+||+||-+++..|.+|.++| +..|.+..||+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl 62 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL 62 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc
Confidence 567999999999999999999999999999998 45566777874
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.38 E-value=2.6e-06 Score=93.45 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+..... .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------------------------------------~ 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------------------------------------Q 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------h
Confidence 36999999999999999999999999999885521100 1
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcC-CceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITEST-SGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~-~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++. .....+.+.+++.||+++ ++.++.+..++ +....+.+.+|+++.+|.||.|+|....
T Consensus 185 ld~-~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 185 LDQ-MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred cCH-HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 222 244566777788999999 99999997643 2256778889999999999999998774
No 293
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.37 E-value=7.5e-06 Score=83.26 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC-ceEEEEecCceEEECceEEEccCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
..|.+.|.+.+...|.+++ +++|+.|..+++ ..+.|++.+|++++|+.||......
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 4577777777888999999 999999988754 3578899899999999999865544
No 294
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.37 E-value=2.4e-06 Score=80.19 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASG 248 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~ 248 (476)
.-.+++.|..+.+..|.-+. +-+|.+.+..++++..|.+.+. ..+++|..|+|+|+.-.
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccccc
Confidence 34578888888999999999 8899999999887778887765 35789999999997653
No 295
>PLN03000 amine oxidase
Probab=98.36 E-value=0.00018 Score=77.93 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
...+|+|||||++||++|..|++.|++|+|+|+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 457999999999999999999999999999998553
No 296
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.36 E-value=8.5e-07 Score=87.30 Aligned_cols=138 Identities=23% Similarity=0.206 Sum_probs=73.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCCCcccch--HHHHhcCcchhhhhhcccce----eeeCCCCC-
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNYGVWE--DEFRDLGLEGCIEHVWRDTV----VYIDEDEP- 178 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~G~~~--~~l~~~~~~~~~~~~~~~~~----~~~~~~~~- 178 (476)
.+|+|+||.||++|++|+.|...+ .++..||+.+.+.=+-|... ..++---+.+++...-+... .+....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 489999999999999999999887 89999998775432212100 00000000111100000000 00000000
Q ss_pred EE-eccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc---eEEEEec----CceEEECceEEEccC
Q 011835 179 IL-IGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG---HRLVACE----HDMIVPCRLATVASG 244 (476)
Q Consensus 179 ~~-~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~---~~~v~~~----~g~~i~a~~vV~A~G 244 (476)
.. +..++....|.++.+.|...+.+.+-.+. +++|++|...+++ .+.|.+. ++.++.|+.||+|+|
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 00 01122347899999999888877775576 9999999987653 4677763 347899999999999
No 297
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.35 E-value=4.4e-06 Score=85.95 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||++|+.+|..|++.|.+|+++++....... .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------~ 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD-----------------------------------------S 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch-----------------------------------------h
Confidence 47999999999999999999999999999875421100 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
++ ..+.+.+.+.+++.||+++ +++|+++..+++ ...+.+++ .++.+|.||.|+|..+
T Consensus 189 ~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~-~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 189 FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDK-VEGVVTDK-GEYEADVVIVATGVKP 246 (444)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCc-EEEEEeCC-CEEEcCEEEECcCCCc
Confidence 12 3355667777888999999 999999965433 44555544 4699999999999765
No 298
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=5.7e-06 Score=85.00 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+-+|..|++.|.+|+|+++.......
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence 48999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+...+.+.+++.||+++ +++|++++.+++ .+.+...++ ++.+|.||+|+|..+.
T Consensus 197 ~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~-~v~v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 197 ED-RDIADNIATILRDQGVDIILNAHVERISHHEN-QVQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEEcCC-eEEeCEEEEeecCCcC
Confidence 12 2345567778888999999 999999987655 455655555 5899999999997764
No 299
>PTZ00058 glutathione reductase; Provisional
Probab=98.34 E-value=5.5e-06 Score=86.88 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||..|+-+|..|++.|.+|+|+++.......
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------------------------------ 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------------------------------ 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------------------------------
Confidence 47999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC-ceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH-DMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-g~~i~a~~vV~A~G~~S 247 (476)
++. .+.+.+.+.+++.||+++ ++.|.+++.++++.+.+.+.+ ++++.+|.||.|+|..+
T Consensus 276 ~d~-~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 276 FDE-TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred CCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence 232 344566777788999999 999999987544334444444 45799999999999665
No 300
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.33 E-value=5.5e-06 Score=86.24 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+++... ...
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~-l~~------------------------------------------ 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP-LRG------------------------------------------ 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc-ccc------------------------------------------
Confidence 3799999999999999999999999999976321 110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+. .+.+.+.+.+++.||+++ ++.++.+...++ ...+.+.+|+++.+|.||.|.|..+.
T Consensus 220 ~d~-~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 220 FDR-QCSEKVVEYMKEQGTLFLEGVVPINIEKMDD-KIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred CCH-HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC-eEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 222 244566777788999999 999998887654 45677778888999999999997763
No 301
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.32 E-value=4e-06 Score=85.12 Aligned_cols=98 Identities=27% Similarity=0.334 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||+|++|+.+|..|++.|++|+++|+........
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~----------------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL----------------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-----------------------------------------
Confidence 599999999999999999999999999999876422110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEE--EEecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRL--VACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~--v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.. ..+.+.+.+.+++.||+++ +..+..++...+.... +...++..+++|.++.+.|...
T Consensus 176 ~~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 176 LD-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred hh-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 11 5678888888999999998 9999999987663232 5667788899999999999665
No 302
>PRK14694 putative mercuric reductase; Provisional
Probab=98.31 E-value=6.7e-06 Score=85.11 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=73.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||+|+.|+-+|..|++.|.+|+|+++..... .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~ 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-------------------------------------------Q 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-------------------------------------------C
Confidence 479999999999999999999999999998632110 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++++.++.+++ .+.+.+.++ ++.+|.||+|+|..+.
T Consensus 216 ~~-~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~-~~~v~~~~~-~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 216 ED-PAVGEAIEAAFRREGIEVLKQTQASEVDYNGR-EFILETNAG-TLRAEQLLVATGRTPN 274 (468)
T ss_pred CC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-EEEEEECCC-EEEeCEEEEccCCCCC
Confidence 12 2355667777888999999 899999987655 455555544 6999999999998774
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.31 E-value=4.3e-06 Score=85.71 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+++.......
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~------------------------------------------ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------ 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh------------------------------------------
Confidence 47999999999999999999999999999986532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
++ ..+.+.+.+.+++.||+++ +++|++++. + .+.+.+|+++.+|.||.|+|...
T Consensus 187 ~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 187 MD-ADMNQPILDELDKREIPYRLNEEIDAING--N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C---EEEECCCCEEEeCEEEECcCCCc
Confidence 12 2355566777888999999 999999863 2 45667788899999999999766
No 304
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.29 E-value=5e-06 Score=77.56 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=90.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCC-----CCc-----cc--chHHH-HhcCcchh--------
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFT-----NNY-----GV--WEDEF-RDLGLEGC-------- 161 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~-----~~~-----G~--~~~~l-~~~~~~~~-------- 161 (476)
...+|+||||||+.|++.|.+|.-. +.+|.|+|+...+. .+. || ....+ .++|.++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 3569999999999999999998866 99999999876443 122 22 01111 12332211
Q ss_pred ---hhhh----------------------------cccceeeeCCCC----------CEEeccCcceecHHHHHHHHHHH
Q 011835 162 ---IEHV----------------------------WRDTVVYIDEDE----------PILIGRAYGRVSRHLLHEELLRR 200 (476)
Q Consensus 162 ---~~~~----------------------------~~~~~~~~~~~~----------~~~~~~~~~~i~r~~l~~~L~~~ 200 (476)
|++. ..+.+......- ...+.+..|.++-..+...+.+.
T Consensus 126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed 205 (453)
T KOG2665|consen 126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED 205 (453)
T ss_pred hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence 1000 000000000000 00123345678888888888888
Q ss_pred HHHCCCeEE-EEEEEEEEEcCCc----eEEEEecCceEEECceEEEccCCCCC
Q 011835 201 CVESGVSYL-SSKVESITESTSG----HRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 201 ~~~~gv~i~-~~~v~~i~~~~~~----~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+..|-+++ +-++..+....+. .++|.-..+++++++.||-|+|..|.
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh
Confidence 888999999 9999999876553 13333333578999999999998774
No 305
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.29 E-value=4.7e-05 Score=75.34 Aligned_cols=195 Identities=15% Similarity=0.149 Sum_probs=100.0
Q ss_pred EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC-----cc--ccccCC----CcccceeEEEEEEEeeCCCCC
Q 011835 210 SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK-----LL--EYEVGG----PKVSVQTAYGVEVEVENNPYD 278 (476)
Q Consensus 210 ~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~-----~~--~~~~~~----~~~~~~~~~g~~~~~~~~~~~ 278 (476)
+++|..+...+++.+.+.+.||+.+.||.||...--.-.+ +. +++..+ ....+...-.+.++++.+..+
T Consensus 249 ~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp 328 (498)
T KOG0685|consen 249 NTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWP 328 (498)
T ss_pred cccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCC
Confidence 5899999988766899999999999999999864322111 00 011000 111222334455667766555
Q ss_pred CCce----eeeccCCCCCCCccccCCCCCeEEEEEEcCCc-eEEEEeecc---cCCCCCChHHHHHHHHHHHHHc-C-Cc
Q 011835 279 PSLM----VFMDYRDCTKQEVPSFESDNPTFLYVMPMSST-RVFFEETCL---ASKDGLPFDILKKKLMARLERL-G-IQ 348 (476)
Q Consensus 279 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~-~~ 348 (476)
++.. .+.+...........++... ++...|.+.. ++..++-.- .--..++.+++.+.+...+.++ + +.
T Consensus 329 ~~~~~i~~lw~~e~l~e~r~~~~~w~~~--~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~ 406 (498)
T KOG0685|consen 329 SDWNGIQLLWLDEDLEELRSTLDAWEED--IMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPE 406 (498)
T ss_pred CCCceeEEEEecCcHHHHhhhhHHHHhh--ceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCC
Confidence 5422 22222101010000111111 1222333321 233332110 1113466788888888877765 2 33
Q ss_pred cc---ceeEE----------EEEEeeCCCC----------CCC----CCCCeeEeccccCccCCcchHHHHHHHHhHHHH
Q 011835 349 VL---KTYEE----------EWSYIPVGGS----------LPN----TEQRNLAFGAAASMVHPATGYSVVRSLSEAPNY 401 (476)
Q Consensus 349 ~~---~~~~~----------~~~~~p~~~~----------~~~----~~~rv~liGDAAh~~~P~~G~G~~~Al~da~~l 401 (476)
+. ++++. .+.+++++.. .|. ..+.|.+.|.|-|..+--+-.| |++++..-
T Consensus 407 iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthG---A~~SG~RE 483 (498)
T KOG0685|consen 407 IPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHG---AVLSGWRE 483 (498)
T ss_pred CCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhh---hHHhhHHH
Confidence 32 33332 2333333211 111 2357999999999877766666 57777777
Q ss_pred HHHHHHHh
Q 011835 402 ASAIAYIL 409 (476)
Q Consensus 402 a~~l~~~l 409 (476)
|+.|.+..
T Consensus 484 A~RL~~~y 491 (498)
T KOG0685|consen 484 ADRLLEHY 491 (498)
T ss_pred HHHHHHHH
Confidence 77777644
No 306
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.27 E-value=1e-05 Score=83.31 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+.+|..|++.|.+|+|+++.......
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------ 207 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH------------------------------------------ 207 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc------------------------------------------
Confidence 47999999999999999999999999999986532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++. .+...+.+. .+.|++++ +++|+.++.+++ .+.+.+.+|+++.+|.||.|+|....
T Consensus 208 ~d~-~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 208 LDE-DISDRFTEI-AKKKWDIRLGRNVTAVEQDGD-GVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred cCH-HHHHHHHHH-HhcCCEEEeCCEEEEEEEcCC-eEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 121 122333332 34689999 999999987665 45667777888999999999997663
No 307
>PLN02546 glutathione reductase
Probab=98.26 E-value=1.1e-05 Score=84.77 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+++.......
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------ 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence 48999999999999999999999999999875532111
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++ ..+.+.+.+.+++.||+++ +++++.+...+++.+.+...+++...+|.||.|.|....
T Consensus 291 ~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 291 FD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred cC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence 22 2344556677788999999 999999987555455566655554558999999997764
No 308
>PRK14727 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.2e-05 Score=83.31 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+-+|..|++.|.+|+|+++... .. .
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-l~------------------------------------------~ 225 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL-LF------------------------------------------R 225 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC-CC------------------------------------------c
Confidence 4799999999999999999999999999986421 00 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ +++|+.++.+++ .+.+...++ ++.+|.||+|+|..+.
T Consensus 226 ~d-~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~~v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 226 ED-PLLGETLTACFEKEGIEVLNNTQASLVEHDDN-GFVLTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred ch-HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EEEEEEcCC-eEEeCEEEEccCCCCC
Confidence 12 2355667777888999999 999999987655 455665555 5899999999998774
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=1.1e-05 Score=83.37 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.......
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------ 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence 48999999999999999999999999999986632211
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC--c--eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~--g--~~i~a~~vV~A~G~~S~ 248 (476)
.+. .+.+.+.+.+++. ++++ ++.|+.++..++ .+.+.+.+ + +++.+|.||.|+|..+.
T Consensus 213 ~d~-~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 213 ADK-DIVKVFTKRIKKQ-FNIMLETKVTAVEAKED-GIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred CCH-HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCC-EEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 222 2445556666666 9999 999999987665 45555443 2 46999999999997764
No 310
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.24 E-value=1.2e-05 Score=83.41 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||+.|+-+|..|++.|.+|+|+++.. ... .
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~------------------------------------------~ 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLR------------------------------------------G 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-ccc------------------------------------------c
Confidence 369999999999999999999999999998632 110 1
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc---eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD---MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g---~~i~a~~vV~A~G~~S 247 (476)
.+ ..+.+.+.+.+++.||+++ ++.++.+...++ .+.|.+.++ +++.+|.||.|.|...
T Consensus 218 ~d-~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 218 FD-QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-KVKVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred cC-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEecCCcceEEEeCEEEEEecCCc
Confidence 22 2345566777788899999 999988887655 455665554 4799999999999665
No 311
>PRK13748 putative mercuric reductase; Provisional
Probab=98.19 E-value=1.6e-05 Score=84.35 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=73.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+++.... . .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-~------------------------------------------~ 307 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF-F------------------------------------------R 307 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc-c------------------------------------------c
Confidence 47999999999999999999999999999874310 0 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
.+ ..+.+.+.+.+++.||+++ ++.|+.++.+++ .+.+.+.++ ++.+|.||.|+|....
T Consensus 308 ~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~v~~~~~-~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 308 ED-PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDG-EFVLTTGHG-ELRADKLLVATGRAPN 366 (561)
T ss_pred cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-EEEEEecCC-eEEeCEEEEccCCCcC
Confidence 11 2345566777788999999 999999987655 455665555 5999999999997664
No 312
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.19 E-value=1.5e-05 Score=81.33 Aligned_cols=91 Identities=23% Similarity=0.347 Sum_probs=71.2
Q ss_pred cEEEECCCHHHHHHHHHHHH--------------cCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeC
Q 011835 109 DLVVIGCGPAGLALAAESAK--------------LGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYID 174 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~--------------~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (476)
.|+|||||++|+-+|..|+. .+.+|+|+++.......
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999886 47899999876532111
Q ss_pred CCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 175 EDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 175 ~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
++. .+.+.+.+.+++.||+++ +++|+.+.. + .|.+++|+++.+|.||.|.|...
T Consensus 226 -------------~~~-~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~---~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 226 -------------FDQ-ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K---EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred -------------CCH-HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C---EEEECCCCEEEccEEEEccCCCC
Confidence 222 355666777888999999 999998864 2 35678888999999999999654
No 313
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.16 E-value=1.6e-05 Score=78.75 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=81.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+++|+|..|+-+|..|...+.+|++|++.+.....
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------ 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------ 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence 46999999999999999999999999999886621110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecCceEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
+--..+.+.+.+..++.||+++ ++.+.+++..++| +..|.+.||.++.||+||..+|+.+.
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 1223456667778888999999 9999999987744 78899999999999999999998773
No 314
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.14 E-value=8.8e-06 Score=80.73 Aligned_cols=96 Identities=26% Similarity=0.314 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-------------CcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLG-------------LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYI 173 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G-------------~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (476)
..+|+|||||+.|.-+|-+|+..- ++|+|+|+.+.....
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~---------------------------- 206 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM---------------------------- 206 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC----------------------------
Confidence 357999999999999999988642 388888887743332
Q ss_pred CCCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCce-EEECceEEEccCCCCCCc
Q 011835 174 DEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDM-IVPCRLATVASGAASGKL 250 (476)
Q Consensus 174 ~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~-~i~a~~vV~A~G~~S~~~ 250 (476)
+ ...+.....+.+++.||+++ ++.|++++.+ .|++++|. +|.++.+|-|.|...+.+
T Consensus 207 --------------~-~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 207 --------------F-PPKLSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTVVWAAGVRASPL 265 (405)
T ss_pred --------------C-CHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEEccCCeeEecCEEEEcCCCcCChh
Confidence 1 23355566777889999999 9999999874 46666676 599999999999877543
No 315
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=3.5e-05 Score=79.64 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+.+|..|++.|.+|+|+++.......
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------ 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence 48999999999999999999999999999986532110
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S 247 (476)
.+ ..+...+.+.+++. |+++ ++++++++.+++..+.+...++ .++.+|.||.|+|...
T Consensus 208 ~d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 208 ED-PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred hh-HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 12 23555666777778 9999 9999999865432233333333 5799999999999765
No 316
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.10 E-value=5.6e-06 Score=81.57 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN 145 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~ 145 (476)
.-+++|||||+||++||+.|++.|++|+|+||.+..+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 357999999999999999999999999999998865543
No 317
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=1.9e-05 Score=77.61 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||+|..|+-+|..|++.|.+|+++++...+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------------------------------------------- 182 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------------------------------- 182 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--------------------------------------------
Confidence 489999999999999999999999999998755210
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc------eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD------MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g------~~i~a~~vV~A~G~~S 247 (476)
.+ ..+.+.+.+.+++.||+++ ++.++++..++++...|.+.++ +++.+|.||.|.|..+
T Consensus 183 ~~-~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 183 AE-KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred CC-HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 11 1234556677788899999 9999999876543445555432 4799999999999544
No 318
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=5e-05 Score=75.72 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC---CcEEEECCCCCCCCCcccchH----HHH--h--cCcc-h---hhhhhcccceee
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG---LNVGLIGPDLPFTNNYGVWED----EFR--D--LGLE-G---CIEHVWRDTVVY 172 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G---~~V~liE~~~~~~~~~G~~~~----~l~--~--~~~~-~---~~~~~~~~~~~~ 172 (476)
++|+|||||++|+.+|.+|.+.- ..+.|+|+...++.......+ .+. . +.+. + .-...|-... .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~-~ 80 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ-L 80 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhc-c
Confidence 58999999999999999999862 239999998766543211100 000 0 0110 1 1111221111 0
Q ss_pred eCCCCCEEecc-CcceecHHHHHHHHHHH----HHHCC---CeEEEEEEEEEEEcCC-ceEEEEecCceEEECceEEEcc
Q 011835 173 IDEDEPILIGR-AYGRVSRHLLHEELLRR----CVESG---VSYLSSKVESITESTS-GHRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 173 ~~~~~~~~~~~-~~~~i~r~~l~~~L~~~----~~~~g---v~i~~~~v~~i~~~~~-~~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.....+...+. +.....|..+-+.|.++ ++..- +.++.++++++...++ +...+...+|.+..||.+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00010100110 00013444443333333 22222 4455778888877633 3677888899989999999999
Q ss_pred CCCC
Q 011835 244 GAAS 247 (476)
Q Consensus 244 G~~S 247 (476)
| |+
T Consensus 161 g-h~ 163 (474)
T COG4529 161 G-HS 163 (474)
T ss_pred c-CC
Confidence 9 55
No 319
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.02 E-value=5.3e-05 Score=80.77 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.......
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~------------------------------------------ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL------------------------------------------ 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc------------------------------------------
Confidence 37999999999999999999999999999986532111
Q ss_pred ecHHHHHHHHHHHH-HHCCCeEE-EEEEEEEEEcCCc-eEEEEecC-------c--------eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRC-VESGVSYL-SSKVESITESTSG-HRLVACEH-------D--------MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~-~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~-------g--------~~i~a~~vV~A~G~~S~ 248 (476)
++. .+.+.+.+.+ ++.||+++ ++.|+.++.++++ .+.+.+.+ + +++.+|.||.|+|....
T Consensus 351 ~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 351 LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 222 2344444443 56899999 9999999876542 24444321 1 37999999999997763
No 320
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.01 E-value=1.4e-05 Score=76.66 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCC-C-CCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEecc
Q 011835 108 LDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPF-T-NNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGR 183 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~-~-~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
..|+|||+||||+.+|..|.++ +++|.|+|+.+.. + -+||+.++.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDH------------------------------- 69 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDH------------------------------- 69 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCC-------------------------------
Confidence 4899999999999999998884 7999999987632 1 234442221
Q ss_pred CcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccccC
Q 011835 184 AYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVG 256 (476)
Q Consensus 184 ~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~~~ 256 (476)
-.-....+.+.+.+++....++ |.+| ...|.+.+ -+-..|+||+|.|+...+.++++..
T Consensus 70 ----pEvKnvintFt~~aE~~rfsf~gNv~v---------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe 129 (468)
T KOG1800|consen 70 ----PEVKNVINTFTKTAEHERFSFFGNVKV---------GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGE 129 (468)
T ss_pred ----cchhhHHHHHHHHhhccceEEEeccee---------cccccHHH-HhhcccEEEEEecCCCCcccCCCCc
Confidence 1112244445566666666777 6555 11122211 1235799999999999888888765
No 321
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=2.9e-05 Score=73.57 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=77.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCc-chhhhhh--cccc----------ee
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGL-EGCIEHV--WRDT----------VV 171 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~-~~~~~~~--~~~~----------~~ 171 (476)
...+|.+|||||-.|+++|..++..|.+|.|+|-....+.+| . .+|++.. |... ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTC-----------Vn~GCVPKKvm~~~a~~~~~~~da~~y 86 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTC-----------VNVGCVPKKVMWYAADYSEEMEDAKDY 86 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceE-----------EeeccccceeEEehhhhhHHhhhhhhc
Confidence 467999999999999999999999999999999764333222 1 1222111 0000 00
Q ss_pred eeCCCCCEEeccCcceec--H----HHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCce--EEECceEEEcc
Q 011835 172 YIDEDEPILIGRAYGRVS--R----HLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDM--IVPCRLATVAS 243 (476)
Q Consensus 172 ~~~~~~~~~~~~~~~~i~--r----~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~--~i~a~~vV~A~ 243 (476)
-++... .....+..+. | ..|...+.+.+.+.+|+++..+...+.. +.+.|...||. .++++.+.+|+
T Consensus 87 G~~~~~--~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~---~~v~V~~~d~~~~~Ytak~iLIAt 161 (478)
T KOG0405|consen 87 GFPINE--EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSP---GEVEVEVNDGTKIVYTAKHILIAT 161 (478)
T ss_pred CCcccc--ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCC---CceEEEecCCeeEEEecceEEEEe
Confidence 000000 0001111111 1 2355666666777889988555544433 25778888884 46899999999
Q ss_pred CCCCC
Q 011835 244 GAASG 248 (476)
Q Consensus 244 G~~S~ 248 (476)
|.+..
T Consensus 162 Gg~p~ 166 (478)
T KOG0405|consen 162 GGRPI 166 (478)
T ss_pred CCccC
Confidence 98773
No 322
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.99 E-value=4e-05 Score=73.55 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=77.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
+...+|||||..||-.+---.+.|.+|+++|-......
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~------------------------------------------ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG------------------------------------------ 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc------------------------------------------
Confidence 35899999999999999999999999999986442211
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC---c--eEEECceEEEccCCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g--~~i~a~~vV~A~G~~S 247 (476)
.++. ++...+.+.+.+.|+++. +++|...+.+.++.+.|.+.+ + ++++||++.+|.|...
T Consensus 249 ~mD~-Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 249 VMDG-EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred ccCH-HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 1332 355555666677999999 999999999988767776654 2 5899999999999765
No 323
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.95 E-value=4.3e-05 Score=80.03 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=67.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||+.|+-+|..|++.|.+|+|+++....
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l--------------------------------------------- 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL--------------------------------------------- 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC---------------------------------------------
Confidence 48999999999999999999999999999864421
Q ss_pred ecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecC---c--eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g--~~i~a~~vV~A~G~~S 247 (476)
.. ...+.+.+++ .||+++ ++.++.+..++++...|.+.+ + +++.+|.||.|.|...
T Consensus 388 -~~---~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 388 -KA---DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -Ch---hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 00 1123445554 699999 999999987655344566543 2 4789999999999554
No 324
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=9.8e-06 Score=83.41 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
....+|||||||+|||+||..|...|++|+|+|....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 3457999999999999999999999999999996553
No 325
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.93 E-value=1.1e-05 Score=80.03 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~ 142 (476)
+||+|||||++|+++|..|++.|.+|+|+|+....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999986533
No 326
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.91 E-value=4.4e-05 Score=72.45 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=29.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...+|+|||+|++||+||+.|++. ++|+|+|.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccc
Confidence 346899999999999999999987 6999999754
No 327
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.91 E-value=4.9e-05 Score=74.49 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..+...+.+.+++.|.+|+ +..|.+|..+++..++|.+.||+++.++.||-=.+.+-
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHH
Confidence 4577788888999999999 99999999988778999999999999988886555443
No 328
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.88 E-value=1.4e-05 Score=83.44 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-----eEEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-----MIVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-----~~i~a~~vV~A~G~~S 247 (476)
..|.+.|.+.+++.|++|+ +++|++|..++++...|.+.++ +++.||.||.+...+.
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 5577888888888999999 9999999988764455555454 5789999999987543
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.84 E-value=0.00013 Score=73.08 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHHH----cC--CcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEe
Q 011835 108 LDLVVIGCGPAGLALAAESAK----LG--LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~----~G--~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
.+|+|||||++|+.+|..|++ .| .+|+|+.. .....
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l~------------------------------------- 187 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLLP------------------------------------- 187 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Ccccc-------------------------------------
Confidence 489999999999999999985 35 47888832 21100
Q ss_pred ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 182 ~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.++ ..+...+.+.+++.||+++ +++++.++. + .|.+.+|+++.+|.||.|+|...
T Consensus 188 -----~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 188 -----GFP-AKVRRLVLRLLARRGIEVHEGAPVTRGPD--G---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred -----cCC-HHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C---eEEeCCCCEEecCEEEEccCCCh
Confidence 011 2244556777788999999 899988853 2 46667888999999999999654
No 330
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.84 E-value=0.00014 Score=70.41 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=66.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||+|+.|+-+|..|++.+.+|+++++.....
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------------------------------------------- 177 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------------------------------------------- 177 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--------------------------------------------
Confidence 489999999999999999999999999998754210
Q ss_pred ecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEec---C--ceEEECceEEEccCCC
Q 011835 188 VSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACE---H--DMIVPCRLATVASGAA 246 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~---~--g~~i~a~~vV~A~G~~ 246 (476)
. ...+.+.+.+. ||+++ ++++++++.++. ...+.+. + +.++.+|.||.|+|..
T Consensus 178 ~-----~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~-~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 A-----EKILLDRLRKNPNIEFLWNSTVKEIVGDNK-VEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred c-----CHHHHHHHHhCCCeEEEeccEEEEEEccCc-EEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 0 11233445556 99999 999999986543 4444442 2 3579999999999944
No 331
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.83 E-value=7.3e-05 Score=74.39 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=64.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
-.|+|||+|+.|+-+|..|++.|.+ |+|+++......
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~------------------------------------------ 210 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA------------------------------------------ 210 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC------------------------------------------
Confidence 4799999999999999999999997 999986541000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe--------------------cCceEEECceEEEccCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC--------------------EHDMIVPCRLATVASGA 245 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~--------------------~~g~~i~a~~vV~A~G~ 245 (476)
.... .+.+.+++.||+++ ++.+++++.++. ...|.+ .++.++.+|.||.|.|.
T Consensus 211 ~~~~-----~~~~~l~~~gi~i~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 211 PAGK-----YEIERLIARGVEFLELVTPVRIIGEGR-VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred CCCH-----HHHHHHHHcCCEEeeccCceeeecCCc-EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 0111 12344677899999 888888875432 333332 12357899999999996
Q ss_pred CC
Q 011835 246 AS 247 (476)
Q Consensus 246 ~S 247 (476)
.+
T Consensus 285 ~p 286 (352)
T PRK12770 285 IP 286 (352)
T ss_pred CC
Confidence 43
No 332
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.7e-05 Score=79.79 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 142 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~ 142 (476)
.|+|+|||+|||+||+.|+++|++|+|+|.....
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 6999999999999999999999999999986643
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.82 E-value=9.1e-05 Score=76.16 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-.|+|||||..|+-+|..|.+.|.+|+|+++..... . .
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~--~----------------------------------------~ 310 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED--M----------------------------------------T 310 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc--C----------------------------------------C
Confidence 489999999999999999999999999998754200 0 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec---------Cc-----------eEEECceEEEccCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------HD-----------MIVPCRLATVASGA 245 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~---------~g-----------~~i~a~~vV~A~G~ 245 (476)
... ...+.+++.||+++ ++.++.+..++++ +..|.+. +| .++.+|.||.|.|.
T Consensus 311 ~~~-----~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 311 ARV-----EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred CCH-----HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 111 11345677899999 9999888765433 3344432 22 36899999999995
Q ss_pred C
Q 011835 246 A 246 (476)
Q Consensus 246 ~ 246 (476)
.
T Consensus 386 ~ 386 (449)
T TIGR01316 386 G 386 (449)
T ss_pred C
Confidence 3
No 334
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=4.2e-05 Score=72.01 Aligned_cols=32 Identities=38% Similarity=0.325 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
..|-|||||.||.-+|+.+++.|++|.|+|-.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999843
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.77 E-value=0.00012 Score=75.55 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=65.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
-+|+|||||..|+-+|..|++.|. +|+++++..... ..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~--~~--------------------------------------- 312 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE--MP--------------------------------------- 312 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc--CC---------------------------------------
Confidence 489999999999999999999998 899998743100 00
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec-------------------CceEEECceEEEccCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-------------------HDMIVPCRLATVASGAA 246 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-------------------~g~~i~a~~vV~A~G~~ 246 (476)
.... ..+.+.+.||+++ ++.++.+..++++...|.+. ++.++.+|.||.|.|..
T Consensus 313 -~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 313 -ASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred -CCHH-----HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 0111 1355677899999 99999988665432233321 23578999999999844
No 336
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.70 E-value=3.1e-05 Score=75.09 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~ 140 (476)
||+||||+|++|+.+|..|++.| .+|+|||+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 79999999999999999999997 7999999854
No 337
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.70 E-value=0.00016 Score=71.75 Aligned_cols=110 Identities=16% Similarity=0.302 Sum_probs=73.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--cEEEECC--CCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEe
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGL--NVGLIGP--DLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILI 181 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~--~V~liE~--~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
....++|||+|++|..|+..+.+.|. +.+|+-+ ..+..+. .|.++ ..
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~------~Ls~~-------------~~---------- 123 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA------RLSKF-------------LL---------- 123 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch------hcccc-------------ee----------
Confidence 35689999999999999999999985 4666632 2222211 00000 00
Q ss_pred ccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccccc
Q 011835 182 GRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYE 254 (476)
Q Consensus 182 ~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~~~ 254 (476)
..-..+.....+..++.|++++ ++.|+.++.... .+.+.+|++++.+.+|+|||. +.+.++.+
T Consensus 124 ------~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K---~l~~~~Ge~~kys~LilATGs-~~~~l~~p 187 (478)
T KOG1336|consen 124 ------TVGEGLAKRTPEFYKEKGIELILGTSVVKADLASK---TLVLGNGETLKYSKLIIATGS-SAKTLDIP 187 (478)
T ss_pred ------eccccccccChhhHhhcCceEEEcceeEEeecccc---EEEeCCCceeecceEEEeecC-ccccCCCC
Confidence 0011112222344577899999 999999998765 788899999999999999997 54444444
No 338
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.68 E-value=0.00019 Score=75.17 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=67.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||..|+-+|..|+..|.+|+|+++.....
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------------------- 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------------------- 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc--------------------------------------------
Confidence 489999999999999999999999999998654210
Q ss_pred ecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecC---c--eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEH---D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g--~~i~a~~vV~A~G~~S 247 (476)
.. ..+.+.+.+ .||+++ ++.++++..+++....+.+.+ + .++.+|.|+.|.|...
T Consensus 388 ~~-----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 388 AD-----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred cc-----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 01 123344443 699999 999999987655444555542 3 4689999999999554
No 339
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=5.5e-05 Score=71.13 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN 145 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~ 145 (476)
+|++|||+|.+|+.+|..|+++|.+|+|+||+..++.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 69999999999999999999999999999998776543
No 340
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.62 E-value=5.6e-05 Score=66.68 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCcEEEECCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLP 141 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~ 141 (476)
..||+|||+|-+||++|+..++. .++|.|||....
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 35999999999999999999865 689999998643
No 341
>PLN02568 polyamine oxidase
Probab=97.62 E-value=7e-05 Score=78.40 Aligned_cols=51 Identities=12% Similarity=-0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCC
Q 011835 193 LHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 193 l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~ 246 (476)
|.+.|.+.+. +-.|+ +++|+.|..+++ .+.|++.+|+++.||.||+|.=..
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~-~v~V~~~dG~~~~aD~VIvTvPl~ 295 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDE-PVKLHFADGSTMTADHVIVTVSLG 295 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCC-eEEEEEcCCCEEEcCEEEEcCCHH
Confidence 4555555442 23577 999999998877 678888898889999999987643
No 342
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.62 E-value=2.4e-05 Score=73.29 Aligned_cols=105 Identities=18% Similarity=0.355 Sum_probs=61.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CC-cEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKL-GL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~-G~-~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
...++|+|||||-+|++.|..+.+. |. +|.|+|.... +| +.........+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~---Hy-------------------YQPgfTLvGgG------ 88 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED---HY-------------------YQPGFTLVGGG------ 88 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh---cc-------------------cCcceEEeccc------
Confidence 3568999999999999999988865 43 6999986431 11 00000000000
Q ss_pred cCccee--cHHHHHHHHHHHHHHCCCeEEEEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 183 RAYGRV--SRHLLHEELLRRCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 183 ~~~~~i--~r~~l~~~L~~~~~~~gv~i~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.-.+ +|+.+ ..+.-.|++++..+|..+..+.+ .|.+.+|++|..|++|+|.|.+-
T Consensus 89 --l~~l~~srr~~-----a~liP~~a~wi~ekv~~f~P~~N---~v~t~gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 89 --LKSLDSSRRKQ-----ASLIPKGATWIKEKVKEFNPDKN---TVVTRGGEEISYDYLVIAMGIQL 145 (446)
T ss_pred --hhhhhhccCcc-----cccccCCcHHHHHHHHhcCCCcC---eEEccCCcEEeeeeEeeeeecee
Confidence 0000 01000 00111233333445556666555 67788999999999999999876
No 343
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.61 E-value=0.00019 Score=69.60 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCcEEEE-CCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 108 LDLVVIGCGPAGLALAAESAKL----GLNVGLI-GPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~----G~~V~li-E~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
-.|-|||+|.-|.-+|+.|++. |.+|.-+ +...+
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------------------------------------- 386 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------------------------------------- 386 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC-----------------------------------------
Confidence 4799999999999999999874 4455433 22111
Q ss_pred cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 183 ~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.+-|-...|.++-.+.+++.||.++ +..|.++..... .+.+.++||.+++.|+||.|+|...
T Consensus 387 --m~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-nl~lkL~dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 387 --MEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-NLVLKLSDGSELRTDLVVVAVGEEP 449 (659)
T ss_pred --hhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-ceEEEecCCCeeeeeeEEEEecCCC
Confidence 0124566677777888899999999 999999988766 6889999999999999999999765
No 344
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.61 E-value=6.8e-05 Score=77.92 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN 145 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~ 145 (476)
+||+|||+||+|+++|..|++.|++|+|||+.......
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 69999999999999999999999999999987655533
No 345
>PRK02106 choline dehydrogenase; Validated
Probab=97.57 E-value=7.9e-05 Score=78.91 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHH-cCCcEEEECCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL 140 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~-~G~~V~liE~~~ 140 (476)
...+|+||||+|++|+.+|..|++ .|++|+|||+..
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 345899999999999999999999 899999999864
No 346
>PRK12831 putative oxidoreductase; Provisional
Probab=97.56 E-value=0.0004 Score=71.66 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=63.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||..|+-+|..|.+.|.+|+|+.+.... .. .
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~--~m---------------------------------------~- 319 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE--EL---------------------------------------P- 319 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc--cC---------------------------------------C-
Confidence 48999999999999999999999999999764310 00 0
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec------------------Cc--eEEECceEEEccCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE------------------HD--MIVPCRLATVASGA 245 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~------------------~g--~~i~a~~vV~A~G~ 245 (476)
-.... .+.+.+.||+++ ++.++.+..++++ +..|.+. +| .++.+|.||.|.|.
T Consensus 320 a~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 320 ARVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred CCHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 01111 233566899999 8888888765433 3333321 12 26889999999994
Q ss_pred C
Q 011835 246 A 246 (476)
Q Consensus 246 ~ 246 (476)
.
T Consensus 395 ~ 395 (464)
T PRK12831 395 S 395 (464)
T ss_pred C
Confidence 3
No 347
>PLN02529 lysine-specific histone demethylase 1
Probab=97.56 E-value=0.00011 Score=79.01 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=32.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...||+|||||++||++|..|++.|++|+|+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 45799999999999999999999999999999854
No 348
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.49 E-value=0.00074 Score=66.61 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=67.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--cEEEECCCCCCCCC----cc---cchHHHHhc-CcchhhhhhcccceeeeCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLPFTNN----YG---VWEDEFRDL-GLEGCIEHVWRDTVVYIDE 175 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~--~V~liE~~~~~~~~----~G---~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 175 (476)
....|+|||||.++..++..|.+.+. +|+++=|...+... ++ ..++..+.+ .+........-.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~------- 261 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLR------- 261 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHH-------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHH-------
Confidence 45689999999999999999999875 79888775543211 10 001111000 000000000000
Q ss_pred CCCEEec-cCcceecHHHHHHHHH----HHH-HHCCCeEE-EEEEEEEEEcCCceEEEEecC-----ceEEECceEEEcc
Q 011835 176 DEPILIG-RAYGRVSRHLLHEELL----RRC-VESGVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVAS 243 (476)
Q Consensus 176 ~~~~~~~-~~~~~i~r~~l~~~L~----~~~-~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-----g~~i~a~~vV~A~ 243 (476)
... ..++.|+...+.+... +.+ .+..++++ +++|++++..+++.+.+.+.+ ..++.+|+||+||
T Consensus 262 ----~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilAT 337 (341)
T PF13434_consen 262 ----EQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILAT 337 (341)
T ss_dssp ----HTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE--
T ss_pred ----HhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcC
Confidence 000 1234566654433322 233 22348899 999999999885567777665 2578999999999
Q ss_pred CC
Q 011835 244 GA 245 (476)
Q Consensus 244 G~ 245 (476)
|.
T Consensus 338 Gy 339 (341)
T PF13434_consen 338 GY 339 (341)
T ss_dssp -E
T ss_pred Cc
Confidence 93
No 349
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.49 E-value=0.00018 Score=74.94 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=75.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCccee
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRV 188 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 188 (476)
.-+|||||.-||-+|..|...|.+|.|++=.+. .+.. ++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------lMer-------------------------------QL 185 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------LMER-------------------------------QL 185 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecch----------HHHH-------------------------------hh
Confidence 479999999999999999999999999954321 0100 23
Q ss_pred cHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCC
Q 011835 189 SRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASG 248 (476)
Q Consensus 189 ~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~ 248 (476)
++. -.+.|.+.+++.|++++ +...+.+..++. +..+.++||..+.+|.||.|+|....
T Consensus 186 D~~-ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~-~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 186 DRT-AGRLLRRKLEDLGIKVLLEKNTEEIVGEDK-VEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred hhH-HHHHHHHHHHhhcceeecccchhhhhcCcc-eeeEeecCCCcccceeEEEecccccc
Confidence 332 33456667788999999 887777776444 88999999999999999999998774
No 350
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.48 E-value=0.00092 Score=69.23 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=64.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
-.|+|||||..|+-+|..+.+.|. +|++++......... ...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------~~~------------------------------- 324 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------NKN------------------------------- 324 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------ccc-------------------------------
Confidence 479999999999999999999986 688776433111000 000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec-----C-------c--eEEECceEEEccCCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE-----H-------D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-----~-------g--~~i~a~~vV~A~G~~S 247 (476)
...+........+.+.+.||+++ ++.++.+..+++.+..|.+. + | .++.+|.||.|.|...
T Consensus 325 ~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 325 NPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred cCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 00000001112445667899999 99999997544434444332 2 1 5789999999999543
No 351
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.41 E-value=0.0002 Score=77.41 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...+|+|||||++||++|+.|++.|++|+|+|+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45799999999999999999999999999999864
No 352
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.38 E-value=0.0014 Score=73.88 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=67.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
-+|+|||+|+.|+.+|..|++.|.+ |+|+|....
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~--------------------------------------------- 352 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD--------------------------------------------- 352 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc---------------------------------------------
Confidence 4799999999999999999999964 788876431
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEec----CceEEECceEEEccCCCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACE----HDMIVPCRLATVASGAASG 248 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~----~g~~i~a~~vV~A~G~~S~ 248 (476)
+ ...+.+.+++.||+++ ++.++.+..++. ...|.+. +++++.+|.|+++.|....
T Consensus 353 -~-----~~~l~~~L~~~GV~i~~~~~v~~i~g~~~-v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 353 -V-----SPEARAEARELGIEVLTGHVVAATEGGKR-VSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred -h-----hHHHHHHHHHcCCEEEcCCeEEEEecCCc-EEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 1 1123456678899999 999999876543 4444443 4568999999999997663
No 353
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.29 E-value=0.0023 Score=70.30 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=62.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
-+|+|||||..|+-+|..|.+.|.+ |+|+++.... .+.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~--~~~--------------------------------------- 609 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE--EMP--------------------------------------- 609 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc--cCC---------------------------------------
Confidence 4799999999999999999999997 9999865420 000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec---------C---------c--eEEECceEEEccC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------H---------D--MIVPCRLATVASG 244 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~---------~---------g--~~i~a~~vV~A~G 244 (476)
-.... .+.+.+.||+++ ++.++.+..++++ +..|.+. + | .++.+|.||.|.|
T Consensus 610 -~~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G 683 (752)
T PRK12778 610 -ARLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683 (752)
T ss_pred -CCHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC
Confidence 01111 134567899998 8888888765443 3333331 1 1 3688999999999
Q ss_pred CC
Q 011835 245 AA 246 (476)
Q Consensus 245 ~~ 246 (476)
..
T Consensus 684 ~~ 685 (752)
T PRK12778 684 VS 685 (752)
T ss_pred CC
Confidence 54
No 354
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.15 E-value=0.0015 Score=63.85 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCCCcccc-------hHHHHhcCcchhhhhhcccce----ee
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNYGVW-------EDEFRDLGLEGCIEHVWRDTV----VY 172 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~G~~-------~~~l~~~~~~~~~~~~~~~~~----~~ 172 (476)
...+|+|.||-||+-|++|+.|...+ .+++.+||.+.+.=+-|.. ...+++| +.-.-+... .+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDL-----VTl~~PTs~ySFLNY 77 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDL-----VTLVDPTSPYSFLNY 77 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhh-----ccccCCCCchHHHHH
Confidence 45689999999999999999999876 7799999988765333321 0111111 100000000 00
Q ss_pred eCCCCCE--EeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCC-ceEE--EEecCceEEECceEEEccCCC
Q 011835 173 IDEDEPI--LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTS-GHRL--VACEHDMIVPCRLATVASGAA 246 (476)
Q Consensus 173 ~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~-~~~~--v~~~~g~~i~a~~vV~A~G~~ 246 (476)
....+.+ .+......+.|.++.+.+...+... -.++ +++|++|...+. .... +.+.++.+++|+.||+++|..
T Consensus 78 L~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~ 156 (436)
T COG3486 78 LHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQ 156 (436)
T ss_pred HHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCC
Confidence 0111110 0111223588999999988888776 4566 999997743322 1333 566677789999999999966
Q ss_pred C
Q 011835 247 S 247 (476)
Q Consensus 247 S 247 (476)
.
T Consensus 157 P 157 (436)
T COG3486 157 P 157 (436)
T ss_pred c
Confidence 5
No 355
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.09 E-value=0.003 Score=65.33 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=63.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
..|+|||+|..|+-+|..+.+.|. +|+|+++.....-.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~----------------------------------------- 321 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMP----------------------------------------- 321 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCC-----------------------------------------
Confidence 589999999999999999999996 69999875421000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec---------C-----------ceEEECceEEEccC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------H-----------DMIVPCRLATVASG 244 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~---------~-----------g~~i~a~~vV~A~G 244 (476)
-... ..+.+.+.||+++ ++.++.+..++++ +..|.+. + ..++.+|.||.|.|
T Consensus 322 -~~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G 395 (467)
T TIGR01318 322 -GSRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFG 395 (467)
T ss_pred -CCHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCc
Confidence 0111 1234567899999 8888888764433 3333321 1 23688999999999
Q ss_pred CCC
Q 011835 245 AAS 247 (476)
Q Consensus 245 ~~S 247 (476)
...
T Consensus 396 ~~p 398 (467)
T TIGR01318 396 FQP 398 (467)
T ss_pred CCC
Confidence 543
No 356
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.08 E-value=0.0059 Score=64.74 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEc-CCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITES-TSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~-~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
...+...|.+.+.+.||+++ ++.++++..+ ++.+++|.. .+| ..+.|+.||+|||..+..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 46788889998888999999 9999999875 444666654 345 367899999999998853
No 357
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.07 E-value=0.0015 Score=63.97 Aligned_cols=97 Identities=27% Similarity=0.356 Sum_probs=70.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--------------CCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceee
Q 011835 107 ILDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVY 172 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~--------------G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (476)
-..+|||||||.|.-.|.+|+.. -++|+|+|..+...+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m--------------------------- 270 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM--------------------------- 270 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH---------------------------
Confidence 36899999999999999999852 3678888775532111
Q ss_pred eCCCCCEEeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc--eEEECceEEEccCCCCCC
Q 011835 173 IDEDEPILIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 173 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
+ -..|.+.-.++..+.|+++. ++.|..+..+ ...+.+.|| ++|..-.+|-|+|...+.
T Consensus 271 ---------------F-dkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 271 ---------------F-DKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred ---------------H-HHHHHHHHHHHhhhccceeecccEEEeecCc---EEEEEcCCCceeeecceEEEecCCCCCch
Confidence 1 22355555666677899999 8899888754 345555566 578899999999977753
No 358
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.07 E-value=0.0028 Score=67.07 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=62.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
-+|+|||||+.|+-+|..|++.|.+|+++++...+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-------------------------------------------- 179 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-------------------------------------------- 179 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc--------------------------------------------
Confidence 589999999999999999999999999998755210
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEE---ecCceE--E--ECce----EEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVA---CEHDMI--V--PCRL----ATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~---~~~g~~--i--~a~~----vV~A~G~~S~ 248 (476)
..+. +... .....||+++ ++.|+.+..++. ...+. ..+|++ + .+|. ||.|.|....
T Consensus 180 ~~~~-~~~~---~~~~~gV~i~~~~~V~~i~~~~~-v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn 247 (555)
T TIGR03143 180 CAKL-IAEK---VKNHPKIEVKFNTELKEATGDDG-LRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPS 247 (555)
T ss_pred cCHH-HHHH---HHhCCCcEEEeCCEEEEEEcCCc-EEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCC
Confidence 1111 1111 1234699999 999999975432 33332 234543 2 3666 9999997763
No 359
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.02 E-value=0.0044 Score=69.21 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
-+|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 47999999999999999999999999999764
No 360
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.01 E-value=0.00054 Score=72.14 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~ 140 (476)
|+||||||.||+.+|..|++.| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999864
No 361
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.99 E-value=0.0077 Score=59.88 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=46.9
Q ss_pred ecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCc-eEEECceEEEccCCCCC
Q 011835 188 VSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHD-MIVPCRLATVASGAASG 248 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g-~~i~a~~vV~A~G~~S~ 248 (476)
..-..+.+.|.+.+++.||+++ +++|+++ +++ ...+.+.++ .+++||.||+|+|..|.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-~~~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-TLRFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-cEEEEECCCceEEecCEEEEcCCCccc
Confidence 3557899999999999999999 9999999 233 366666543 56999999999998874
No 362
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.99 E-value=0.003 Score=68.21 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=62.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
.+|+|||||..|+-+|..+.+.|. +|+++.+..... +.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~--~~--------------------------------------- 507 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN--MP--------------------------------------- 507 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC--CC---------------------------------------
Confidence 479999999999999999999997 699987643110 00
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec---------Cc-----------eEEECceEEEccC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE---------HD-----------MIVPCRLATVASG 244 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~---------~g-----------~~i~a~~vV~A~G 244 (476)
.... ..+.+.+.||+++ ++.++.+..++++ +..|.+. +| .++.+|.||+|.|
T Consensus 508 -~~~~-----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG 581 (654)
T PRK12769 508 -GSKK-----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG 581 (654)
T ss_pred -CCHH-----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECcc
Confidence 0111 1345677899999 8888888754332 3334331 11 2588999999988
Q ss_pred CC
Q 011835 245 AA 246 (476)
Q Consensus 245 ~~ 246 (476)
..
T Consensus 582 ~~ 583 (654)
T PRK12769 582 FN 583 (654)
T ss_pred CC
Confidence 43
No 363
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00066 Score=71.30 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=33.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..++|+||||+|.+|.++|..|+..|++|+|+|...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 356899999999999999999999999999999763
No 364
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.94 E-value=0.00093 Score=65.44 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcE--EEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNV--GLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V--~liE~~~ 140 (476)
..+|+|+|||++||++|++|++.+-+| +|+|..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 469999999999999999999998876 4478755
No 365
>PLN02785 Protein HOTHEAD
Probab=96.90 E-value=0.00098 Score=70.58 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...||+||||||.||+.+|..|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 346999999999999999999999 69999999864
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.90 E-value=0.0087 Score=64.54 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
-.|+|||||..|+-+|..|.+.|. +|+|+.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 589999999999999999999997 599997644
No 367
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.86 E-value=0.016 Score=58.60 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEecCceEEECceEEEcc
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACEHDMIVPCRLATVAS 243 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~~g~~i~a~~vV~A~ 243 (476)
.+|-+.+.+.+.-.|..+. +..|.++..++++ ..+|. .+|++++|+.||+..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECC
Confidence 4677888888877888888 9999999886554 44455 478899999999643
No 368
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.84 E-value=0.011 Score=59.70 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc----eEEEEe-cCc--eEE---ECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSG----HRLVAC-EHD--MIV---PCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~----~~~v~~-~~g--~~i---~a~~vV~A~G~~S 247 (476)
..+..=|.+.+++.||++. +++|++++.+.++ ...+.+ .+| ++| .-|+|++..|+-.
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4455667788999999999 9999999876332 122322 344 233 4689999888543
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.0034 Score=65.30 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|||+|++|+++|..|++.|++|+++|+..
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999998654
No 370
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.82 E-value=0.0094 Score=58.62 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRA 184 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (476)
.....|||+|.|.+|.++.-.|-..-++|+|+.+..-+.-+. .....+
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP--------------------------------LLpS~~ 100 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP--------------------------------LLPSTT 100 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEee--------------------------------ccCCcc
Confidence 455789999999999999999988899999998754221100 001112
Q ss_pred cceecHHHHHHHHHHHHHHC--CCeEEEEEEEEEEEcCCce-EEEEecCc----eEEECceEEEccCCCCC
Q 011835 185 YGRVSRHLLHEELLRRCVES--GVSYLSSKVESITESTSGH-RLVACEHD----MIVPCRLATVASGAASG 248 (476)
Q Consensus 185 ~~~i~r~~l~~~L~~~~~~~--gv~i~~~~v~~i~~~~~~~-~~v~~~~g----~~i~a~~vV~A~G~~S~ 248 (476)
-|.+.-+.+.+=+...+... ++.++.+..+.++.+.+.+ ....+.++ ..+..|++|+|+|+...
T Consensus 101 vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 101 VGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred ccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCC
Confidence 23344444444445555333 5777788888888877631 22233444 47899999999998874
No 371
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.75 E-value=0.012 Score=65.20 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc-C-CcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKL-G-LNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~-G-~~V~liE~~~ 140 (476)
-+|+|||||..|+-+|..+.+. | .+|+|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4899999999999999998887 5 3899997754
No 372
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.73 E-value=0.15 Score=51.74 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 191 HLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 191 ~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
..+.+.|.+.+++.|++|+ +++|++|+.+++++..+...+|+++.||.||.|.-...
T Consensus 197 ~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 197 ELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 3345557777878899999 99999999987743322234677899999999877554
No 373
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.73 E-value=0.0082 Score=60.74 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=64.6
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCcEEEECCCCCCCCC-cccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 110 LVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNN-YGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~--G~~V~liE~~~~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
++|||+|++|+++|..|.+. +.+++++......... ++++......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGG------------------------------- 49 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcc-------------------------------
Confidence 58999999999999998885 4577777554322211 1111100000
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
......+....... .+.++++. +++|++++.... .|.+.+| ++..|.+|+|+|+....
T Consensus 50 ~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~id~~~~---~v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 50 IASLEDLRYPPRFN-RATGIDVRTGTEVTSIDPENK---VVLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred cCCHHHhcccchhH-HhhCCEEeeCCEEEEecCCCC---EEEECCC-cccccEEEEcCCCcccC
Confidence 00011111100112 45689999 999999998765 5666677 78999999999987743
No 374
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.69 E-value=0.011 Score=62.05 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHH---cCCcEEEE--CCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEec
Q 011835 108 LDLVVIGCGPAGLALAAESAK---LGLNVGLI--GPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIG 182 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~---~G~~V~li--E~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (476)
..++|||-|+||..+.-.+.+ .-++++++ |+.....+. .+...+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri-----------~Ls~vl~------------------- 53 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRI-----------LLSSVLA------------------- 53 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccce-----------eeccccC-------------------
Confidence 479999999999999998888 34789999 443322111 0000000
Q ss_pred cCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCC
Q 011835 183 RAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGK 249 (476)
Q Consensus 183 ~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~ 249 (476)
+.-+..++.-.-.+..+++||+++ +.+|+.++.+.. .|+.+.|.++.+|-+|+|||+....
T Consensus 54 ---~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k---~V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 54 ---GEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANK---VVTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred ---CCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcc---eEEccCCcEeecceeEEecCccccc
Confidence 001112222222455688999999 999999998764 7778889999999999999977643
No 375
>PRK13984 putative oxidoreductase; Provisional
Probab=96.69 E-value=0.0076 Score=64.59 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.2
Q ss_pred CCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhcc
Q 011835 370 EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 411 (476)
Q Consensus 370 ~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~ 411 (476)
.++|+.+||+++ |..+..|+.+|..+|..|.+.|.+
T Consensus 568 ~~gVfAaGD~~~------~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 568 IPWLFAGGDIVH------GPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCCEEEecCcCC------chHHHHHHHHHHHHHHHHHHHhcc
Confidence 457899999984 334678999999999999988753
No 376
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.65 E-value=0.086 Score=53.33 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 194 HEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 194 ~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
...+...+...|.+|+ +++|+.|+.+++ .+.|.+.+|+++.||.||.|.....
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~~-~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIEREDG-GVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEESS-EEEEEETTSSEEEESEEEE-S-HHH
T ss_pred hHHHHHHHhhcCceeecCCcceecccccc-ccccccccceEEecceeeecCchhh
Confidence 3344444455677999 999999999987 7889999999999999999998655
No 377
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.53 E-value=0.012 Score=66.42 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=62.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
.-+|+|||||..|+-+|..+.+.|.+ |+++.+..... . +
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e--m-------------------------------------~- 610 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE--A-------------------------------------P- 610 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc--C-------------------------------------C-
Confidence 35899999999999999999999985 77776533100 0 0
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCc-eEEEEec-----------------Cc--eEEECceEEEccC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSG-HRLVACE-----------------HD--MIVPCRLATVASG 244 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~-~~~v~~~-----------------~g--~~i~a~~vV~A~G 244 (476)
-.... .+.+.+.||+++ ++.++.+..++++ +..|.+. +| .++.+|.||.|.|
T Consensus 611 --a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG 683 (1006)
T PRK12775 611 --ARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALG 683 (1006)
T ss_pred --CCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCC
Confidence 01111 234667899999 8888888654433 3333321 12 3689999999999
Q ss_pred CCC
Q 011835 245 AAS 247 (476)
Q Consensus 245 ~~S 247 (476)
...
T Consensus 684 ~~p 686 (1006)
T PRK12775 684 TKA 686 (1006)
T ss_pred cCC
Confidence 654
No 378
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.011 Score=56.60 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=75.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
.+..++|||||-.++-.|--++-.|-++.|+=|.....+.
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~---------------------------------------- 227 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG---------------------------------------- 227 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc----------------------------------------
Confidence 3468999999999999999999999999988554422111
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAAS 247 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S 247 (476)
.+ ..+...+.+.++..|++++ ++.++.+....++...+....|..-..|.|+-|+|...
T Consensus 228 --FD-~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 228 --FD-EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred --hh-HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 11 2345556677788899999 99999999988765666666665556999999999553
No 379
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.33 E-value=0.0049 Score=63.43 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..+|+|||+|..|+-.|..|++.+.+|+|+.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3579999999999999999999999999997754
No 380
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.31 E-value=0.038 Score=59.56 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..+|+|||+|..|+-+|..+.+.|. +|+++.+..
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999999999996 799997643
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.28 E-value=0.032 Score=62.20 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=29.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHc-CC-cEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKL-GL-NVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~-G~-~V~liE~~~ 140 (476)
.-+|+|||||..|+-+|..+.+. |. +|+|+++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35899999999999999998886 86 799998754
No 382
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.28 E-value=0.016 Score=56.68 Aligned_cols=133 Identities=22% Similarity=0.238 Sum_probs=78.4
Q ss_pred CcccEEEECCCHHHHHHHHHHH--HcCCcEEEEC--CCCCCCCCcccchHHHHhcCcchhhhhhccc--ceeeeCCCCCE
Q 011835 106 GILDLVVIGCGPAGLALAAESA--KLGLNVGLIG--PDLPFTNNYGVWEDEFRDLGLEGCIEHVWRD--TVVYIDEDEPI 179 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La--~~G~~V~liE--~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 179 (476)
....-+|||+|.+..+++.+.. +.+.+|.+|- ...|..+.- + -++|...+- +..... ..-|......+
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPP-L----SKELW~~~d-pn~~k~lrfkqwsGkeRsi 250 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPP-L----SKELWWYGD-PNSAKKLRFKQWSGKERSI 250 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCC-c----chhceecCC-CChhhheeecccCCcccee
Confidence 4567899999998877765444 4578898883 333322110 0 001111000 000000 00111112223
Q ss_pred EeccCcceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecCceEEECceEEEccCCCCCCccc
Q 011835 180 LIGRAYGRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLE 252 (476)
Q Consensus 180 ~~~~~~~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vV~A~G~~S~~~~~ 252 (476)
.+.++...++..+|.. +..-||-+. +-+|+.++..+. .|.++||.+|.+|-.++|||....++.-
T Consensus 251 ffepd~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~~ 316 (659)
T KOG1346|consen 251 FFEPDGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEEDK---KVILNDGTTIGYDKCLIATGVRPKKLQV 316 (659)
T ss_pred EecCCcceeChhHCcc-----cccCceEEEeccceEEeecccC---eEEecCCcEeehhheeeecCcCcccchh
Confidence 3344444577766544 345689999 889999988765 7888999999999999999988755443
No 383
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.029 Score=54.27 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcce
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGR 187 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (476)
.+|+|||||.+.+-.|+.|++.+-+|+|+=|...+.
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 399999999999999999999999999996544211
Q ss_pred ecHHHHHHHHHHHHHHC-CCeEE-EEEEEEEEEcCCceEEEEecC--c--eEEECceEEEccCCCC
Q 011835 188 VSRHLLHEELLRRCVES-GVSYL-SSKVESITESTSGHRLVACEH--D--MIVPCRLATVASGAAS 247 (476)
Q Consensus 188 i~r~~l~~~L~~~~~~~-gv~i~-~~~v~~i~~~~~~~~~v~~~~--g--~~i~a~~vV~A~G~~S 247 (476)
. ...+.+++.+. +++++ ++.+..+.-++ +..|.+.+ + .++..|.|+.+.|...
T Consensus 180 --a---~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 180 --A---EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred --c---CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCCCC
Confidence 1 23445555544 79998 99999988765 33444443 2 3677888888888443
No 384
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.15 E-value=0.025 Score=60.07 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=60.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAY 185 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (476)
...|+|||+|..|+-+|..+.+.| .+|+|+.+..... .
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~--~--------------------------------------- 305 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRED--M--------------------------------------- 305 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCccc--C---------------------------------------
Confidence 357999999999999999999998 5688886643100 0
Q ss_pred ceecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe---------c-------Cc--eEEECceEEEccCC
Q 011835 186 GRVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---------E-------HD--MIVPCRLATVASGA 245 (476)
Q Consensus 186 ~~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~---------~-------~g--~~i~a~~vV~A~G~ 245 (476)
...... .+.+.+.||+++ ++.++.+..++++.+.+.+ . +| .++.+|.||.|.|.
T Consensus 306 -~~~~~~-----~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 306 -PAHDEE-----IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred -CCCHHH-----HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 001111 223456799999 8889888766554433321 1 12 36888999988883
No 385
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.07 E-value=0.68 Score=48.29 Aligned_cols=34 Identities=44% Similarity=0.517 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
.||||||||++||++|..|+++|++|+|+|+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4899999999999999999999999999998753
No 386
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.02 E-value=0.049 Score=56.64 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
-.|+|||||..|+-+|..+.+.|. +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 479999999999999888888875 699998654
No 387
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.95 E-value=0.0099 Score=51.68 Aligned_cols=32 Identities=47% Similarity=0.513 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||||..|.++|..|+++|++|.|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999998765
No 388
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.61 E-value=0.02 Score=52.66 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=25.3
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCcEEEECCC
Q 011835 110 LVVIGCGPAGLALAAESAKL--GLNVGLIGPD 139 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~--G~~V~liE~~ 139 (476)
.+|||||+||.+||-.|+.. ..+++|+-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 58999999999999999976 5678888543
No 389
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.43 E-value=0.014 Score=60.72 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCcEEEECCCC
Q 011835 105 NGILDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDL 140 (476)
Q Consensus 105 ~~~~dVvIIGgG~aGl~~A~~La~~-G~~V~liE~~~ 140 (476)
...||.||||||-||+.+|..|++. ..+|+|+|+..
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 4679999999999999999999987 68999999854
No 390
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.042 Score=52.51 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=73.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
+-+-+|||||-.+|.||-.|+-.|++|+|.=|... |+
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~-----------Lr-------------------------------- 234 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL-----------LR-------------------------------- 234 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee-----------cc--------------------------------
Confidence 35789999999999999999999999999855331 10
Q ss_pred eecHHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEecC---ce--EEECceEEEccCCCC
Q 011835 187 RVSRHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVACEH---DM--IVPCRLATVASGAAS 247 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~~---g~--~i~a~~vV~A~G~~S 247 (476)
.++|. +.+.+.+.+++.|+.+. .+..+.++.-+++...|...+ ++ +-..|-|+.|-|..+
T Consensus 235 GFDqd-mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 235 GFDQD-MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred cccHH-HHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcccc
Confidence 14554 66777888999999999 778888888777655554432 22 335899999999776
No 391
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.42 E-value=0.021 Score=50.78 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999865
No 392
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.39 E-value=0.074 Score=54.39 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHCCCeEE-EEEEEEEEEcCCceEEEEec-CceEEE--CceEEEccCCCC
Q 011835 200 RCVESGVSYL-SSKVESITESTSGHRLVACE-HDMIVP--CRLATVASGAAS 247 (476)
Q Consensus 200 ~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~~-~g~~i~--a~~vV~A~G~~S 247 (476)
.+.+.|++++ +++|+.++.++. .+.+... +++++. +|.||+|+|+..
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~-~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQ-TVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCC-EEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 3467899998 999999987665 4444433 245677 999999999755
No 393
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.38 E-value=0.05 Score=56.98 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..+|+|||+|.+|.=.|..|++...+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3589999999999999999999999999987754
No 394
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.29 E-value=0.23 Score=51.35 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--------------------CCc-EEEECCCCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKL--------------------GLN-VGLIGPDLPFT 143 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~--------------------G~~-V~liE~~~~~~ 143 (476)
-.|+|||+|..|+-+|..|.+. |.+ |.|+-|..+..
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~ 223 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQ 223 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHh
Confidence 4799999999999999998876 764 88887655433
No 395
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.022 Score=52.69 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
+++|||+|..|.+.|..|.+.|+.|+++|++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 699999999999999999999999999998653
No 396
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.19 E-value=0.022 Score=50.97 Aligned_cols=32 Identities=41% Similarity=0.428 Sum_probs=26.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||.|-.||.+|..|++.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 69999999999999999999999999998765
No 397
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.03 Score=57.88 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|+|||.|++|+++|..|++.|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999765
No 398
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.92 E-value=0.038 Score=47.53 Aligned_cols=30 Identities=33% Similarity=0.560 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
|+|+|+|-.|+..|..|++.|++|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999763
No 399
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.46 E-value=0.056 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=31.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...+|+|||+|-.|.+.|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34589999999999999999999999999998754
No 400
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.41 E-value=0.068 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
...|+|||||..|+.-|..|.+.|++|+||.++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 458999999999999999999999999999543
No 401
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.35 E-value=0.054 Score=52.11 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999866
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.32 E-value=0.073 Score=48.42 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|||||..|+..+..|.+.|.+|+|++++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999997754
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.28 E-value=0.032 Score=44.63 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3589999999999999999999999999997653
No 404
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.20 E-value=0.053 Score=52.82 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999865
No 405
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.18 E-value=0.069 Score=55.03 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999998864
No 406
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.18 Score=48.52 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=54.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccchHHHHhcCcchhhhhhcccceeeeCCCCCEEeccCcc
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYG 186 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (476)
..||+|||||-+|.-+|+-|+--=-.|+|+|=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e--------------------------------------------- 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE--------------------------------------------- 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh---------------------------------------------
Confidence 46999999999999999999877678999975441
Q ss_pred eecHHHHHHHHHHHHHH-CCCeEE-EEEEEEEEEcCCceEEEEecC
Q 011835 187 RVSRHLLHEELLRRCVE-SGVSYL-SSKVESITESTSGHRLVACEH 230 (476)
Q Consensus 187 ~i~r~~l~~~L~~~~~~-~gv~i~-~~~v~~i~~~~~~~~~v~~~~ 230 (476)
+ .-+..|.+++.. .+|+++ +..-+.+.-+++++.++.+.|
T Consensus 389 -L---kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d 430 (520)
T COG3634 389 -L---KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD 430 (520)
T ss_pred -h---hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence 1 123344455533 589999 888888887766566666554
No 407
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.92 E-value=0.23 Score=52.74 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEEEEEEcCCceEEEEe---cCc--eEEECceEEEccCCCCCC
Q 011835 190 RHLLHEELLRRCVESGVSYL-SSKVESITESTSGHRLVAC---EHD--MIVPCRLATVASGAASGK 249 (476)
Q Consensus 190 r~~l~~~L~~~~~~~gv~i~-~~~v~~i~~~~~~~~~v~~---~~g--~~i~a~~vV~A~G~~S~~ 249 (476)
...+...|.+.+.+.||+++ ++.++++..+++.++++.. .+| ..+.|+.||+|||..+..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 35688888998988999999 9999999876655666654 245 367999999999998853
No 408
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.72 E-value=0.092 Score=46.15 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|+|+|.+|..||..|...|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3689999999999999999999999999998754
No 409
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.64 E-value=0.11 Score=47.03 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 358999999999999999999999999999764
No 410
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.41 E-value=0.13 Score=46.64 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999999 599999874
No 411
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.39 E-value=0.097 Score=50.90 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.+|+|||+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999998853
No 412
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.38 E-value=0.1 Score=50.22 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999998765
No 413
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.36 E-value=0.096 Score=51.04 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999865
No 414
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.35 E-value=0.1 Score=50.69 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGP 138 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~ 138 (476)
+|+|||+|..|.+.|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 415
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.30 E-value=0.089 Score=44.36 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
++|+|+|+.+.++|..++..|++|+|+|.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 68999999999999999999999999986643
No 416
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.28 E-value=0.09 Score=54.37 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.-.|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999999999999999999998765
No 417
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.10 E-value=0.12 Score=49.79 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999998865
No 418
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.10 E-value=0.13 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999998865
No 419
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.97 E-value=0.12 Score=50.03 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999998743
No 420
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.91 E-value=0.19 Score=42.43 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~ 140 (476)
...|+|||+|-+|-+++..|++.|.+ |+|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45899999999999999999999998 99998754
No 421
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.83 E-value=0.12 Score=50.69 Aligned_cols=32 Identities=38% Similarity=0.438 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||.|-.||+.|..|++.|++|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 69999999999999999999999999998765
No 422
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.82 E-value=0.14 Score=49.44 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999865
No 423
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.78 E-value=0.18 Score=41.07 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 110 LVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
|+|+|.|..|..+|..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999875
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.76 E-value=0.14 Score=51.68 Aligned_cols=33 Identities=27% Similarity=0.184 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
-.|+|+|+|+.|+.+|..|+..|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 479999999999999999999999999998865
No 425
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.69 E-value=0.15 Score=49.22 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999865
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.55 E-value=0.18 Score=42.40 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 479999999999999999999998 589998765
No 427
>PLN02529 lysine-specific histone demethylase 1
Probab=92.47 E-value=11 Score=41.25 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhcc
Q 011835 370 EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKH 411 (476)
Q Consensus 370 ~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~ 411 (476)
.++++++||+.+..+|-+=+| |++++..+|+.|.+.+..
T Consensus 562 ~grL~FAGEaTs~~~pgtVeG---Ai~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHG---AFLSGLREASRILHVARS 600 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHH---HHHHHHHHHHHHHHHHhh
Confidence 479999999988878866555 789999999888887754
No 428
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.35 E-value=0.46 Score=46.95 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=34.6
Q ss_pred HCCCeEE-EEEEEEEEEcCCceEEEEecC-----ceEEECceEEEccCCC
Q 011835 203 ESGVSYL-SSKVESITESTSGHRLVACEH-----DMIVPCRLATVASGAA 246 (476)
Q Consensus 203 ~~gv~i~-~~~v~~i~~~~~~~~~v~~~~-----g~~i~a~~vV~A~G~~ 246 (476)
+..+.++ +++|..++..++|.+.+.+.. .++++.|+||+|||-+
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3468899 999999999988645555442 2588999999999976
No 429
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.29 E-value=0.18 Score=48.42 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||+|..|...|..+++.|++|+++|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999998765
No 430
>PRK04148 hypothetical protein; Provisional
Probab=92.20 E-value=0.12 Score=43.12 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 479999999 999999999999999999997663
No 431
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.17 E-value=0.19 Score=48.89 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEECCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLP 141 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~--~V~liE~~~~ 141 (476)
+|.|||+|..|.++|+.|+..|+ .|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999998653
No 432
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.17 E-value=0.14 Score=46.11 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=28.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..+|+|||+|.++.-+|..|++.|.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3689999999999999999999999999997654
No 433
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.11 E-value=0.14 Score=51.80 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=25.8
Q ss_pred CCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHH
Q 011835 371 QRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIA 406 (476)
Q Consensus 371 ~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~ 406 (476)
+|+.++||..+..++ .|+..|+.+|..+|+.|.
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHhC
Confidence 599999998754333 589999999999998873
No 434
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.99 E-value=0.23 Score=48.89 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 789999876
No 435
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.98 E-value=0.51 Score=47.96 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=30.3
Q ss_pred CcccEEEECC-CHHHHHHHHHHHHc-------CC--cEEEECCCCC
Q 011835 106 GILDLVVIGC-GPAGLALAAESAKL-------GL--NVGLIGPDLP 141 (476)
Q Consensus 106 ~~~dVvIIGg-G~aGl~~A~~La~~-------G~--~V~liE~~~~ 141 (476)
...+|.|||+ |..|.++|+.|+.. |+ +++++|....
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~ 144 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQ 144 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcc
Confidence 3479999999 99999999999988 66 6888887553
No 436
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.86 E-value=0.26 Score=46.64 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
...|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3589999999999999999999995 799998765
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.73 E-value=0.29 Score=44.41 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
...|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3589999999999999999999998 799999875
No 438
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.69 E-value=0.22 Score=49.25 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999874
No 439
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.55 E-value=0.24 Score=48.64 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||+|..|.+.|..|++.|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999998754
No 440
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.26 E-value=0.24 Score=50.30 Aligned_cols=33 Identities=30% Similarity=0.198 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||.|..|+.+|..|++.|++|+++|++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 469999999999999999999999999999765
No 441
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=91.25 E-value=15 Score=40.63 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCCeeEeccccCccCCcchHHHHHHHHhHHHHHHHHHHHhccCC
Q 011835 370 EQRNLAFGAAASMVHPATGYSVVRSLSEAPNYASAIAYILKHDH 413 (476)
Q Consensus 370 ~~rv~liGDAAh~~~P~~G~G~~~Al~da~~la~~l~~~l~~~~ 413 (476)
.+|++++|++.+...|-+ |.-|+++|..+|+.|...++...
T Consensus 643 ~GRL~FAGEaTs~~~~Gt---VhGAi~SGlRAA~eIl~~~~~~~ 683 (808)
T PLN02328 643 DGRVFFAGEATNKQYPAT---MHGAFLSGMREAANILRVARRRS 683 (808)
T ss_pred CCCEEEEEhhHhCCCCeE---hHHHHHHHHHHHHHHHHHHhhcc
Confidence 369999999987766644 45589999999999988876653
No 442
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.21 E-value=0.94 Score=50.36 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=24.0
Q ss_pred ccEEEECCCHHHHHHHHHHHH---cCCcEEEECC
Q 011835 108 LDLVVIGCGPAGLALAAESAK---LGLNVGLIGP 138 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~---~G~~V~liE~ 138 (476)
..|||||||..|+-+|..+.. .+..+.+.+.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 479999999999999986654 4666666654
No 443
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.18 E-value=0.34 Score=42.84 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCc-EEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~ 140 (476)
.|+|||+|-.|...|..|++.|.. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99998865
No 444
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.11 E-value=0.22 Score=50.60 Aligned_cols=32 Identities=44% Similarity=0.505 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||.|..|+.+|..|++.|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 59999999999999999999999999998765
No 445
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.04 E-value=0.29 Score=47.69 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999998755
No 446
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.04 E-value=0.33 Score=47.86 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 799999865
No 447
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.03 E-value=0.23 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..-+|+|||||.+|.-+|.-+...|.+|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 45689999999999999999999999999999865
No 448
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.02 E-value=0.39 Score=40.79 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~ 141 (476)
.|+|||+|-.|...|..|++.|. +++|+|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999988763
No 449
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.94 E-value=0.31 Score=47.31 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
.+|.|||+|..|..+|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999999887 899998743
No 450
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.92 E-value=0.37 Score=45.14 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
...++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 35899999999999999999999999999986654
No 451
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.89 E-value=0.35 Score=47.55 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..|++.|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999998854
No 452
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.88 E-value=0.34 Score=46.54 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-+|-++|..|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999998 699998865
No 453
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.62 E-value=0.35 Score=46.74 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..|++.|++|+++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999865
No 454
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.56 E-value=0.34 Score=50.08 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|+|+|++|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999998765
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.50 E-value=0.41 Score=44.68 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~ 141 (476)
..|+|||+|..|..+|..|++.|. +++|+|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 5788888663
No 456
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.46 E-value=0.42 Score=46.48 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.+|.|||+|-.|.+.|..|++.|++|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999998865
No 457
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.43 E-value=0.34 Score=48.67 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|||.|+.|..+|..|+..|.+|+++|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3489999999999999999999999999998765
No 458
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.41 E-value=0.45 Score=43.51 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|.. ++|+|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5899999999999999999999986 89998865
No 459
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.14 E-value=0.93 Score=47.52 Aligned_cols=33 Identities=27% Similarity=0.174 Sum_probs=28.5
Q ss_pred ccEEEECC-CHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGC-GPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGg-G~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.-|+|.|| |-.|..++..|++.|++|+++.|+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 35889997 8899999999999999999987643
No 460
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.09 E-value=0.4 Score=46.93 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999998854
No 461
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.07 E-value=0.53 Score=45.94 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--cEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGL--NVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~--~V~liE~~~ 140 (476)
...+|+|||+|-.|.++|+.|+..|+ ++.|+|...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34689999999999999999999998 799998754
No 462
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.03 E-value=0.53 Score=40.01 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=28.6
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--cEEEECCCC
Q 011835 109 DLVVIGC-GPAGLALAAESAKLGL--NVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGg-G~aGl~~A~~La~~G~--~V~liE~~~ 140 (476)
+|.|||+ |..|.++|+.|...++ ++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 7999999 9999999999999875 688998764
No 463
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.92 E-value=0.5 Score=44.30 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
...|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3589999999999999999999997 688888765
No 464
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.87 E-value=0.46 Score=48.84 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 369999999999999999999999999998654
No 465
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.84 E-value=0.5 Score=44.02 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=30.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC-----------CcEEEECCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLG-----------LNVGLIGPDL 140 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G-----------~~V~liE~~~ 140 (476)
....|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999974 3889998865
No 466
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.81 E-value=0.39 Score=45.98 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||.|..|.+.|..|++.|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998754
No 467
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.64 E-value=0.49 Score=45.71 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|||.|.+|..+|..|.+.|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999998864
No 468
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.60 E-value=0.44 Score=43.72 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
....|+|||||..++.=+..|.+.|.+|+|+-+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4468999999999999999999999999999553
No 469
>PRK08328 hypothetical protein; Provisional
Probab=89.58 E-value=0.55 Score=43.57 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 588888765
No 470
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.53 E-value=0.48 Score=46.05 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--cEEEECCCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGL--NVGLIGPDLP 141 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~--~V~liE~~~~ 141 (476)
+|+|||+|-+|.++|+.|+..|+ ++.|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 59999999999999999999994 7999998653
No 471
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.38 E-value=0.57 Score=48.20 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|+|.|.+|+++|..|++.|++|+++|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999998654
No 472
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.35 E-value=0.6 Score=43.26 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|..|...|..|++.|. +++|+|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 688888765
No 473
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.32 E-value=0.53 Score=45.75 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~ 141 (476)
.+|+|||+|..|...|..++..|+ +|.|+|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 8999998553
No 474
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.29 E-value=0.57 Score=40.84 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=28.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.+|.|||-|-.|...|..|.++|++|.++++..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 379999999999999999999999999999764
No 475
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.28 E-value=0.47 Score=49.40 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
..|.|||+|..|...|..|++.|++|+++|+...
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998654
No 476
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.22 E-value=0.52 Score=47.69 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 479999999999999999999999999999765
No 477
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.17 E-value=0.63 Score=40.82 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=29.9
Q ss_pred CcccEEEECCCH-HHHHHHHHHHHcCCcEEEECCC
Q 011835 106 GILDLVVIGCGP-AGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 106 ~~~dVvIIGgG~-aGl~~A~~La~~G~~V~liE~~ 139 (476)
...+|+|||+|- +|..+|..|.+.|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 346899999996 6999999999999999999874
No 478
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.14 E-value=0.45 Score=49.04 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG--LNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G--~~V~liE~~~ 140 (476)
++|.|||.|-.|+.+|..|++.| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 46999999999999999999985 7799998654
No 479
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.08 E-value=0.54 Score=46.82 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC-CcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G-~~V~liE~~~ 140 (476)
.+|+|||+|-.|..+|..|++.| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999864
No 480
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.08 E-value=0.59 Score=43.23 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc---EEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~---V~liE~~~ 140 (476)
..|+|+|+|-+|..+|..|.+.|.+ +.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4799999999999999999999985 88998864
No 481
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.96 E-value=0.64 Score=45.48 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~~ 141 (476)
.+|+|||+|-.|.++|+.++..|+ +++|+|.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 8999987664
No 482
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.86 E-value=0.73 Score=41.73 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|+|+|.|-.|..+|..|.+.|++|+++|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 479999999999999999999999999998753
No 483
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.81 E-value=0.47 Score=49.46 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|||+|..|...|..|++.|++|+|+|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999865
No 484
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.67 E-value=0.74 Score=41.39 Aligned_cols=32 Identities=41% Similarity=0.538 Sum_probs=29.3
Q ss_pred ccEEEECC-CHHHHHHHHHHHHcCCcEEEECCC
Q 011835 108 LDLVVIGC-GPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 108 ~dVvIIGg-G~aGl~~A~~La~~G~~V~liE~~ 139 (476)
..++|+|| |..|..+|..|++.|.+|+++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999997 999999999999999999999775
No 485
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=0.76 Score=44.77 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCC
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~ 143 (476)
+.|||+|+|-|+.=+.++..|+..|.+|+.||++.-.+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 46999999999999999999999999999999977544
No 486
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.62 E-value=0.6 Score=42.91 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.9
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIG-CGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIG-gG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.||| +|..|.++|..|++.|++|+++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999997754
No 487
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.61 E-value=0.55 Score=47.23 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
+|.|||.|..|+.+|..++. |++|+++|++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 59999999999999988885 99999999865
No 488
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.59 E-value=0.72 Score=48.17 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
..|.|||+|..|...|..|++.|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998653
No 489
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.52 E-value=0.58 Score=48.71 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 139 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~ 139 (476)
..|+|+|.|+.|++++..|.+.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999964
No 490
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.50 E-value=0.76 Score=42.58 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 688888765
No 491
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.41 E-value=0.66 Score=44.70 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc-EEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLN-VGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~-V~liE~~~ 140 (476)
..++|+|+|-+|.++|..|++.|++ |+|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4699999999999999999999997 99998754
No 492
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.32 E-value=0.58 Score=46.07 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=36.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCCCCCCc
Q 011835 106 GILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY 146 (476)
Q Consensus 106 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~ 146 (476)
+.+||||||-|..=..+|.+.++.|.+|+=+|++.-.+.+|
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~w 47 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNW 47 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcc
Confidence 56999999999999999999999999999999987666555
No 493
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.27 E-value=0.55 Score=51.25 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 494
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.14 E-value=0.56 Score=45.52 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 109 dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
.|.|+|+|-.|...|+.|++.|.+|+++-|..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999998888886644
No 495
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=88.06 E-value=0.66 Score=40.11 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=27.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 479999999999999999999999999999977
No 496
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.01 E-value=0.62 Score=45.15 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 110 LVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 110 VvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
|.|||+|-.|..+|..|+..|+ +|+|+|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999865
No 497
>PRK08223 hypothetical protein; Validated
Probab=87.99 E-value=0.78 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-cEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGL-NVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~-~V~liE~~~ 140 (476)
..|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 589999999999999999999998 578888765
No 498
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.85 E-value=0.62 Score=50.82 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 499
>PLN02494 adenosylhomocysteinase
Probab=87.78 E-value=0.75 Score=46.91 Aligned_cols=34 Identities=26% Similarity=0.164 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCcEEEECCCC
Q 011835 107 ILDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140 (476)
Q Consensus 107 ~~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~ 140 (476)
...|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999998865
No 500
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.67 E-value=0.59 Score=49.61 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCcEEEECCCCC
Q 011835 108 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLP 141 (476)
Q Consensus 108 ~dVvIIGgG~aGl~~A~~La~~G~~V~liE~~~~ 141 (476)
-+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5799999999999999999999999999998763
Done!