Query 011836
Match_columns 476
No_of_seqs 289 out of 3324
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 4E-97 9E-102 714.6 41.5 423 41-470 3-427 (428)
2 PLN00043 elongation factor 1-a 100.0 8.7E-86 1.9E-90 674.9 51.4 429 41-474 3-434 (447)
3 PTZ00141 elongation factor 1- 100.0 3.4E-84 7.3E-89 663.7 53.0 428 41-473 3-433 (446)
4 KOG0459 Polypeptide release fa 100.0 1.3E-84 2.8E-89 619.2 31.7 429 38-471 72-501 (501)
5 KOG0458 Elongation factor 1 al 100.0 2.7E-83 5.9E-88 638.5 35.8 429 37-470 169-602 (603)
6 PRK12317 elongation factor 1-a 100.0 3.6E-79 7.7E-84 628.9 51.2 417 41-472 2-423 (425)
7 TIGR00483 EF-1_alpha translati 100.0 3.6E-78 7.7E-83 621.2 51.2 421 41-472 3-425 (426)
8 PRK05124 cysN sulfate adenylyl 100.0 8.1E-75 1.8E-79 598.7 49.1 410 41-470 23-438 (474)
9 COG2895 CysN GTPases - Sulfate 100.0 6.6E-76 1.4E-80 552.2 36.7 410 41-471 2-417 (431)
10 TIGR02034 CysN sulfate adenyly 100.0 7.2E-75 1.6E-79 590.9 45.9 400 46-466 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 2.9E-71 6.4E-76 594.6 50.5 414 38-472 17-436 (632)
12 PLN03126 Elongation factor Tu; 100.0 3.2E-67 6.8E-72 539.5 46.1 389 41-470 77-477 (478)
13 CHL00071 tufA elongation facto 100.0 4.3E-66 9.3E-71 527.4 46.7 391 40-471 7-409 (409)
14 PRK12735 elongation factor Tu; 100.0 6.8E-66 1.5E-70 523.8 47.5 380 40-470 7-395 (396)
15 PRK00049 elongation factor Tu; 100.0 2E-65 4.3E-70 519.9 47.3 379 41-470 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 4.1E-65 9E-70 517.7 47.1 378 40-470 7-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 3.3E-64 7.2E-69 511.8 47.0 377 41-470 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 9.7E-64 2.1E-68 511.6 46.3 381 39-470 55-446 (447)
19 COG0050 TufB GTPases - transla 100.0 1.2E-61 2.6E-66 445.0 31.8 380 38-470 5-393 (394)
20 KOG0460 Mitochondrial translat 100.0 2.2E-61 4.7E-66 451.1 25.0 381 39-471 48-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 5.3E-56 1.2E-60 453.2 40.1 346 41-468 30-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 2.3E-53 4.9E-58 449.9 39.5 337 47-473 2-344 (614)
23 PRK04000 translation initiatio 100.0 7.4E-52 1.6E-56 421.8 40.2 345 40-467 4-411 (411)
24 COG5258 GTPBP1 GTPase [General 100.0 1.4E-52 3E-57 397.5 31.6 365 37-469 109-526 (527)
25 TIGR03680 eif2g_arch translati 100.0 1.1E-51 2.4E-56 420.9 40.4 341 43-466 2-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 8.9E-50 1.9E-54 421.6 40.4 335 46-469 1-338 (581)
27 COG3276 SelB Selenocysteine-sp 100.0 1.1E-48 2.5E-53 381.0 30.8 296 47-403 2-300 (447)
28 KOG0463 GTP-binding protein GP 100.0 2.1E-49 4.6E-54 374.4 21.8 380 43-475 131-552 (641)
29 KOG1143 Predicted translation 100.0 3.8E-44 8.3E-49 338.6 25.0 374 43-472 165-585 (591)
30 COG5257 GCD11 Translation init 100.0 7.9E-42 1.7E-46 318.0 32.7 343 43-468 8-413 (415)
31 KOG0052 Translation elongation 100.0 3.3E-45 7.1E-50 352.9 9.6 371 41-475 3-377 (391)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 9.5E-41 2E-45 352.0 29.5 280 45-359 1-290 (594)
33 KOG0461 Selenocysteine-specifi 100.0 2.1E-39 4.6E-44 303.7 22.0 346 45-444 7-380 (522)
34 COG1217 TypA Predicted membran 100.0 1.4E-38 3E-43 309.2 28.2 281 43-359 3-294 (603)
35 KOG0462 Elongation factor-type 100.0 7.1E-39 1.5E-43 316.9 22.2 266 43-357 58-332 (650)
36 PRK10218 GTP-binding protein; 100.0 5.2E-38 1.1E-42 330.7 30.1 279 43-358 3-293 (607)
37 cd01883 EF1_alpha Eukaryotic e 100.0 2.5E-38 5.5E-43 297.1 24.2 218 47-267 1-218 (219)
38 TIGR01393 lepA GTP-binding pro 100.0 1.6E-37 3.4E-42 328.5 30.5 267 44-359 2-279 (595)
39 PRK05433 GTP-binding protein L 100.0 1.2E-37 2.6E-42 329.7 29.0 269 42-359 4-283 (600)
40 COG0481 LepA Membrane GTPase L 100.0 1.5E-37 3.2E-42 302.9 25.6 268 41-357 5-283 (603)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 2.2E-36 4.8E-41 281.8 22.0 207 47-267 1-207 (208)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.7E-34 3.7E-39 265.1 20.7 192 44-266 1-193 (195)
43 PRK07560 elongation factor EF- 100.0 1.8E-33 3.9E-38 306.3 28.3 289 41-357 16-375 (731)
44 COG0480 FusA Translation elong 100.0 2.7E-33 5.9E-38 296.5 27.9 273 42-357 7-392 (697)
45 PRK00007 elongation factor G; 100.0 8.7E-33 1.9E-37 299.2 30.0 281 42-357 7-394 (693)
46 TIGR00487 IF-2 translation ini 100.0 7E-33 1.5E-37 291.6 28.1 251 41-355 83-340 (587)
47 PRK05306 infB translation init 100.0 5.2E-33 1.1E-37 298.8 27.6 251 41-356 286-543 (787)
48 PRK12739 elongation factor G; 100.0 1.5E-32 3.3E-37 297.6 27.6 272 42-357 5-391 (691)
49 PRK00741 prfC peptide chain re 100.0 3.9E-32 8.4E-37 283.3 28.9 276 43-357 8-380 (526)
50 TIGR00484 EF-G translation elo 100.0 2.2E-31 4.8E-36 288.7 30.2 282 41-357 6-392 (689)
51 TIGR00503 prfC peptide chain r 100.0 2.9E-31 6.4E-36 276.8 27.9 275 43-357 9-381 (527)
52 KOG1145 Mitochondrial translat 100.0 4.7E-32 1E-36 268.4 19.1 262 32-357 140-408 (683)
53 PF00009 GTP_EFTU: Elongation 100.0 2.3E-31 5.1E-36 244.1 19.3 175 43-243 1-178 (188)
54 PRK13351 elongation factor G; 100.0 1.5E-30 3.3E-35 282.7 29.1 273 42-357 5-390 (687)
55 CHL00189 infB translation init 100.0 7E-31 1.5E-35 279.9 25.1 252 41-356 240-501 (742)
56 COG4108 PrfC Peptide chain rel 100.0 3.3E-31 7.1E-36 256.7 16.1 278 44-357 11-382 (528)
57 TIGR00490 aEF-2 translation el 100.0 3E-30 6.4E-35 280.4 23.8 289 41-357 15-374 (720)
58 COG0532 InfB Translation initi 100.0 4.3E-30 9.4E-35 257.5 21.6 233 44-337 4-245 (509)
59 KOG0465 Mitochondrial elongati 100.0 7.7E-31 1.7E-35 262.6 15.6 276 42-357 36-421 (721)
60 KOG0466 Translation initiation 100.0 3.3E-31 7.2E-36 245.1 10.8 348 42-468 35-458 (466)
61 PRK12740 elongation factor G; 100.0 2.7E-29 5.8E-34 272.7 27.4 264 51-357 1-373 (668)
62 PRK04004 translation initiatio 100.0 3.2E-29 7E-34 264.6 25.9 260 43-354 4-326 (586)
63 PLN00116 translation elongatio 100.0 3.9E-29 8.5E-34 275.3 24.3 156 40-218 14-191 (843)
64 TIGR00491 aIF-2 translation in 100.0 1.6E-28 3.4E-33 258.2 25.8 259 44-354 3-324 (590)
65 PTZ00416 elongation factor 2; 100.0 3.6E-28 7.8E-33 267.2 26.1 153 42-217 16-184 (836)
66 cd01885 EF2 EF2 (for archaea a 100.0 1.8E-27 4E-32 222.2 16.2 173 46-241 1-201 (222)
67 cd01886 EF-G Elongation factor 99.9 3.1E-26 6.7E-31 220.6 15.4 174 47-251 1-175 (270)
68 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.6E-25 3.6E-30 210.0 17.5 192 47-267 1-224 (224)
69 PRK14845 translation initiatio 99.9 2.1E-24 4.6E-29 236.9 24.9 227 105-356 490-783 (1049)
70 cd01888 eIF2_gamma eIF2-gamma 99.9 4.7E-25 1E-29 204.7 16.7 157 46-243 1-190 (203)
71 KOG0469 Elongation factor 2 [T 99.9 1E-25 2.2E-30 220.6 12.4 294 39-357 13-474 (842)
72 cd01889 SelB_euk SelB subfamil 99.9 1.1E-24 2.4E-29 200.5 18.0 163 46-243 1-177 (192)
73 cd04168 TetM_like Tet(M)-like 99.9 1.8E-24 3.9E-29 204.8 16.6 143 47-211 1-143 (237)
74 cd01891 TypA_BipA TypA (tyrosi 99.9 9E-24 1.9E-28 194.8 18.5 171 45-243 2-173 (194)
75 KOG0464 Elongation factor G [T 99.9 1.9E-25 4.1E-30 214.5 7.5 271 43-357 35-419 (753)
76 KOG0467 Translation elongation 99.9 6.5E-23 1.4E-27 210.3 22.6 134 39-195 3-136 (887)
77 cd04167 Snu114p Snu114p subfam 99.9 3.7E-23 8E-28 193.5 18.6 165 46-232 1-176 (213)
78 cd01890 LepA LepA subfamily. 99.9 6E-23 1.3E-27 186.5 17.6 163 46-243 1-168 (179)
79 KOG1144 Translation initiation 99.9 1.8E-23 3.8E-28 213.1 14.1 246 42-337 472-793 (1064)
80 cd04169 RF3 RF3 subfamily. Pe 99.9 9E-23 1.9E-27 196.4 17.9 150 45-216 2-151 (267)
81 cd04171 SelB SelB subfamily. 99.9 5.8E-22 1.3E-26 176.9 18.0 155 47-243 2-157 (164)
82 cd03704 eRF3c_III This family 99.9 2.3E-22 5E-27 167.0 12.6 107 362-469 2-108 (108)
83 cd04093 HBS1_C HBS1_C: this fa 99.9 2.2E-21 4.8E-26 160.9 14.2 106 362-469 2-107 (107)
84 cd00881 GTP_translation_factor 99.9 1.2E-20 2.7E-25 172.3 18.1 170 47-243 1-178 (189)
85 cd03705 EF1_alpha_III Domain I 99.8 6E-21 1.3E-25 157.5 11.4 102 362-466 2-104 (104)
86 cd04170 EF-G_bact Elongation f 99.8 1.5E-20 3.3E-25 182.1 15.9 144 47-216 1-144 (268)
87 COG1160 Predicted GTPases [Gen 99.8 4.7E-20 1E-24 182.7 15.7 158 43-245 176-344 (444)
88 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.8E-19 8.2E-24 159.5 16.2 151 47-243 2-157 (168)
89 cd04095 CysN_NoDQ_III TCysN_No 99.8 1.8E-19 3.8E-24 148.3 12.0 100 362-466 2-103 (103)
90 PF03143 GTP_EFTU_D3: Elongati 99.8 3.1E-19 6.7E-24 145.3 13.0 98 359-469 1-98 (99)
91 COG1160 Predicted GTPases [Gen 99.8 2.1E-19 4.5E-24 178.1 13.1 144 46-243 4-156 (444)
92 PRK00093 GTP-binding protein D 99.8 4.5E-19 9.7E-24 183.8 16.1 156 43-245 171-337 (435)
93 COG1159 Era GTPase [General fu 99.8 3E-19 6.5E-24 168.0 12.6 153 43-244 4-164 (298)
94 KOG0468 U5 snRNP-specific prot 99.8 5.6E-18 1.2E-22 171.5 21.3 134 40-195 123-261 (971)
95 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-19 3.6E-24 157.9 8.7 144 46-243 1-152 (156)
96 TIGR03594 GTPase_EngA ribosome 99.8 2.6E-18 5.7E-23 177.8 16.3 158 42-245 169-337 (429)
97 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1E-18 2.3E-23 156.6 11.2 156 47-243 1-160 (167)
98 TIGR00436 era GTP-binding prot 99.8 7.1E-18 1.5E-22 163.5 17.1 147 47-244 2-156 (270)
99 cd01895 EngA2 EngA2 subfamily. 99.8 1E-17 2.2E-22 150.5 16.3 154 45-243 2-166 (174)
100 cd01513 Translation_factor_III 99.8 6E-18 1.3E-22 139.1 12.3 101 362-466 2-102 (102)
101 cd01894 EngA1 EngA1 subfamily. 99.7 2.2E-17 4.8E-22 146.0 14.4 141 49-243 1-149 (157)
102 TIGR03598 GTPase_YsxC ribosome 99.7 3E-17 6.5E-22 149.3 15.5 153 41-241 14-179 (179)
103 PRK15494 era GTPase Era; Provi 99.7 5.3E-17 1.1E-21 161.9 17.1 151 43-244 50-208 (339)
104 TIGR03594 GTPase_EngA ribosome 99.7 2.5E-17 5.5E-22 170.5 14.3 143 47-243 1-151 (429)
105 cd01864 Rab19 Rab19 subfamily. 99.7 3.1E-17 6.8E-22 146.9 12.9 150 45-243 3-157 (165)
106 cd03693 EF1_alpha_II EF1_alpha 99.7 2.8E-17 6.1E-22 131.7 11.2 87 272-358 2-90 (91)
107 PRK03003 GTP-binding protein D 99.7 3.6E-17 7.8E-22 170.6 14.7 155 44-245 210-375 (472)
108 PRK03003 GTP-binding protein D 99.7 1.2E-16 2.6E-21 166.7 17.1 147 44-244 37-191 (472)
109 cd04089 eRF3_II eRF3_II: domai 99.7 9E-17 1.9E-21 126.2 11.4 82 274-355 1-82 (82)
110 cd01879 FeoB Ferrous iron tran 99.7 8.3E-17 1.8E-21 142.6 12.3 140 50-243 1-148 (158)
111 cd04154 Arl2 Arl2 subfamily. 99.7 8E-17 1.7E-21 145.5 12.2 150 44-243 13-166 (173)
112 PRK00089 era GTPase Era; Revie 99.7 3.2E-16 6.8E-21 153.9 17.0 153 43-244 3-163 (292)
113 cd04124 RabL2 RabL2 subfamily. 99.7 3.2E-16 6.9E-21 139.9 14.9 148 46-244 1-150 (161)
114 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.4E-16 5.3E-21 140.6 14.1 150 45-243 2-155 (164)
115 cd04157 Arl6 Arl6 subfamily. 99.7 2.4E-16 5.1E-21 140.4 13.7 149 47-243 1-155 (162)
116 cd03698 eRF3_II_like eRF3_II_l 99.7 2.2E-16 4.7E-21 124.3 11.3 82 274-355 1-83 (83)
117 cd04151 Arl1 Arl1 subfamily. 99.7 1.5E-16 3.3E-21 141.4 11.5 147 47-243 1-151 (158)
118 cd01898 Obg Obg subfamily. Th 99.7 4.5E-16 9.8E-21 139.8 14.7 147 47-243 2-162 (170)
119 PRK00093 GTP-binding protein D 99.7 5.4E-16 1.2E-20 160.8 17.0 144 46-243 2-153 (435)
120 PRK09518 bifunctional cytidyla 99.7 9.6E-16 2.1E-20 167.3 19.5 164 27-244 256-428 (712)
121 cd04113 Rab4 Rab4 subfamily. 99.7 2.1E-16 4.6E-21 140.7 11.3 148 46-243 1-153 (161)
122 cd04149 Arf6 Arf6 subfamily. 99.7 3.5E-16 7.6E-21 140.7 12.2 150 44-243 8-161 (168)
123 cd01860 Rab5_related Rab5-rela 99.7 6.3E-16 1.4E-20 137.8 13.5 150 46-243 2-154 (163)
124 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.8E-16 6.2E-21 143.4 11.5 159 45-245 3-163 (183)
125 PRK09518 bifunctional cytidyla 99.7 3.9E-16 8.4E-21 170.4 14.6 155 44-245 449-614 (712)
126 PF10662 PduV-EutP: Ethanolami 99.7 3.9E-16 8.5E-21 133.6 11.3 132 46-243 2-137 (143)
127 PRK09554 feoB ferrous iron tra 99.7 7.6E-16 1.6E-20 167.5 16.5 147 44-244 2-160 (772)
128 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.6E-16 9.9E-21 140.8 12.5 150 44-243 14-167 (174)
129 PLN00223 ADP-ribosylation fact 99.7 6.9E-16 1.5E-20 140.5 13.7 152 43-244 15-170 (181)
130 cd01861 Rab6 Rab6 subfamily. 99.7 4.2E-16 9.1E-21 138.7 11.9 147 47-243 2-153 (161)
131 cd04158 ARD1 ARD1 subfamily. 99.7 2.8E-16 6.1E-21 141.5 10.3 149 47-244 1-153 (169)
132 cd01897 NOG NOG1 is a nucleola 99.7 8.6E-16 1.9E-20 137.8 13.4 149 46-244 1-160 (168)
133 PRK15467 ethanolamine utilizat 99.7 7.6E-16 1.7E-20 137.0 12.9 133 47-244 3-139 (158)
134 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.1E-15 2.5E-20 135.7 13.9 148 46-243 2-153 (162)
135 smart00175 RAB Rab subfamily o 99.7 5.6E-16 1.2E-20 138.2 11.8 147 46-243 1-153 (164)
136 cd01867 Rab8_Rab10_Rab13_like 99.7 7.1E-16 1.5E-20 138.5 12.1 151 45-243 3-156 (167)
137 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.7E-15 3.7E-20 133.8 14.4 138 46-243 2-148 (157)
138 TIGR02528 EutP ethanolamine ut 99.7 5.6E-16 1.2E-20 135.1 11.1 131 47-243 2-136 (142)
139 COG2229 Predicted GTPase [Gene 99.7 1.5E-15 3.3E-20 132.6 13.5 162 41-243 6-169 (187)
140 cd01866 Rab2 Rab2 subfamily. 99.7 5.5E-16 1.2E-20 139.4 11.1 151 45-243 4-157 (168)
141 cd01863 Rab18 Rab18 subfamily. 99.7 9.1E-16 2E-20 136.6 12.4 149 46-243 1-153 (161)
142 TIGR00231 small_GTP small GTP- 99.7 2E-15 4.4E-20 132.7 14.4 152 46-243 2-155 (161)
143 cd04122 Rab14 Rab14 subfamily. 99.7 6.6E-16 1.4E-20 138.4 11.4 150 46-243 3-155 (166)
144 PRK04213 GTP-binding protein; 99.7 1.6E-15 3.5E-20 140.4 14.3 154 44-243 8-183 (201)
145 cd04156 ARLTS1 ARLTS1 subfamil 99.7 8.6E-16 1.9E-20 136.6 11.8 148 47-243 1-153 (160)
146 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 6.8E-16 1.5E-20 138.3 11.2 150 45-244 2-156 (166)
147 cd04106 Rab23_lke Rab23-like s 99.7 2E-15 4.3E-20 134.5 14.2 148 46-243 1-154 (162)
148 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.4E-15 3E-20 135.5 12.9 147 47-243 2-152 (159)
149 PRK12298 obgE GTPase CgtA; Rev 99.7 8.7E-16 1.9E-20 155.2 13.0 156 44-245 158-326 (390)
150 cd01865 Rab3 Rab3 subfamily. 99.7 6.5E-16 1.4E-20 138.4 10.7 151 46-244 2-155 (165)
151 cd04114 Rab30 Rab30 subfamily. 99.6 1.8E-15 3.8E-20 135.9 13.6 151 43-243 5-160 (169)
152 smart00173 RAS Ras subfamily o 99.6 1E-15 2.2E-20 136.8 11.6 147 47-243 2-153 (164)
153 smart00177 ARF ARF-like small 99.6 1E-15 2.2E-20 138.7 11.7 151 44-244 12-166 (175)
154 cd04116 Rab9 Rab9 subfamily. 99.6 5.9E-15 1.3E-19 132.7 16.5 150 44-243 4-162 (170)
155 cd03694 GTPBP_II Domain II of 99.6 1.3E-15 2.8E-20 120.9 10.6 81 275-355 1-87 (87)
156 cd00879 Sar1 Sar1 subfamily. 99.6 9.6E-16 2.1E-20 140.6 11.4 152 43-243 17-182 (190)
157 cd00154 Rab Rab family. Rab G 99.6 2.4E-15 5.1E-20 132.7 13.5 150 46-243 1-153 (159)
158 cd04121 Rab40 Rab40 subfamily. 99.6 5.6E-15 1.2E-19 135.3 16.0 152 44-245 5-160 (189)
159 cd04120 Rab12 Rab12 subfamily. 99.6 1.6E-15 3.4E-20 140.3 12.4 151 46-245 1-156 (202)
160 cd01862 Rab7 Rab7 subfamily. 99.6 4.2E-15 9.1E-20 133.7 14.9 150 46-244 1-159 (172)
161 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 3E-15 6.5E-20 138.7 14.3 151 46-245 1-161 (201)
162 cd01878 HflX HflX subfamily. 99.6 1E-15 2.3E-20 142.1 11.2 146 43-243 39-196 (204)
163 cd04163 Era Era subfamily. Er 99.6 9E-15 2E-19 130.0 16.7 150 45-243 3-160 (168)
164 cd01868 Rab11_like Rab11-like. 99.6 2.3E-15 5E-20 134.6 12.8 149 45-243 3-156 (165)
165 cd04140 ARHI_like ARHI subfami 99.6 6.1E-15 1.3E-19 132.1 15.4 148 46-243 2-156 (165)
166 cd04127 Rab27A Rab27a subfamil 99.6 3.4E-15 7.4E-20 135.6 13.8 152 44-245 3-170 (180)
167 cd04112 Rab26 Rab26 subfamily. 99.6 1.4E-15 3E-20 139.8 11.3 150 46-244 1-155 (191)
168 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.9E-15 4E-20 134.2 11.7 147 47-243 1-151 (158)
169 PRK00454 engB GTP-binding prot 99.6 6.8E-15 1.5E-19 135.5 15.8 151 43-243 22-185 (196)
170 cd04119 RJL RJL (RabJ-Like) su 99.6 2.9E-15 6.3E-20 133.9 12.8 148 46-244 1-159 (168)
171 PRK12299 obgE GTPase CgtA; Rev 99.6 4.1E-15 8.9E-20 147.4 15.0 153 43-245 156-321 (335)
172 PRK12296 obgE GTPase CgtA; Rev 99.6 3.9E-15 8.5E-20 153.0 15.2 158 43-245 157-333 (500)
173 cd04115 Rab33B_Rab33A Rab33B/R 99.6 6.9E-15 1.5E-19 132.5 15.1 149 45-243 2-160 (170)
174 cd03697 EFTU_II EFTU_II: Elong 99.6 1.7E-15 3.6E-20 120.4 9.5 83 275-357 1-87 (87)
175 cd04175 Rap1 Rap1 subgroup. T 99.6 2.5E-15 5.5E-20 134.3 11.8 146 46-243 2-154 (164)
176 smart00178 SAR Sar1p-like memb 99.6 4.7E-15 1E-19 135.5 13.7 153 43-243 15-176 (184)
177 PTZ00133 ADP-ribosylation fact 99.6 2.4E-15 5.2E-20 137.1 11.8 153 43-245 15-171 (182)
178 PLN03118 Rab family protein; P 99.6 5E-15 1.1E-19 138.3 13.7 154 43-245 12-170 (211)
179 TIGR03156 GTP_HflX GTP-binding 99.6 2.4E-15 5.2E-20 150.3 12.2 144 44-243 188-343 (351)
180 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 7.3E-15 1.6E-19 132.4 14.2 152 47-245 2-158 (170)
181 PF00025 Arf: ADP-ribosylation 99.6 4.4E-15 9.6E-20 134.4 12.7 152 43-243 12-167 (175)
182 cd04136 Rap_like Rap-like subf 99.6 4.8E-15 1E-19 132.1 12.7 149 46-243 2-154 (163)
183 KOG0092 GTPase Rab5/YPT51 and 99.6 4.5E-15 9.7E-20 130.3 12.1 149 44-243 4-158 (200)
184 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.7E-15 8E-20 133.9 11.9 149 47-242 1-159 (167)
185 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 5.1E-15 1.1E-19 132.6 12.7 146 48-243 2-157 (164)
186 cd04142 RRP22 RRP22 subfamily. 99.6 9.5E-15 2.1E-19 134.9 14.8 151 46-245 1-167 (198)
187 cd01882 BMS1 Bms1. Bms1 is an 99.6 5.4E-14 1.2E-18 132.4 20.1 166 42-266 36-201 (225)
188 cd04135 Tc10 TC10 subfamily. 99.6 2.4E-15 5.2E-20 135.8 10.4 156 46-243 1-165 (174)
189 PRK05291 trmE tRNA modificatio 99.6 3.3E-15 7.1E-20 154.4 12.6 143 43-245 213-363 (449)
190 COG0486 ThdF Predicted GTPase 99.6 3.4E-15 7.4E-20 148.7 12.1 152 38-245 210-369 (454)
191 cd04155 Arl3 Arl3 subfamily. 99.6 4.8E-15 1E-19 133.7 12.1 151 43-243 12-166 (173)
192 cd00877 Ran Ran (Ras-related n 99.6 5E-15 1.1E-19 132.9 12.1 148 46-245 1-152 (166)
193 cd04159 Arl10_like Arl10-like 99.6 9E-15 2E-19 129.0 13.6 147 48-243 2-152 (159)
194 TIGR02729 Obg_CgtA Obg family 99.6 7.9E-15 1.7E-19 145.3 14.4 153 43-243 155-320 (329)
195 cd04139 RalA_RalB RalA/RalB su 99.6 5.7E-15 1.2E-19 131.5 12.0 152 47-244 2-154 (164)
196 cd04109 Rab28 Rab28 subfamily. 99.6 1.7E-14 3.7E-19 135.1 15.7 151 46-245 1-159 (215)
197 cd04128 Spg1 Spg1p. Spg1p (se 99.6 2.1E-14 4.6E-19 130.8 15.9 154 46-245 1-159 (182)
198 PTZ00369 Ras-like protein; Pro 99.6 9.8E-15 2.1E-19 133.9 13.7 153 44-245 4-160 (189)
199 cd04144 Ras2 Ras2 subfamily. 99.6 6.4E-15 1.4E-19 135.3 12.4 150 47-245 1-156 (190)
200 cd04126 Rab20 Rab20 subfamily. 99.6 5.5E-15 1.2E-19 138.3 11.9 159 46-245 1-183 (220)
201 PRK12297 obgE GTPase CgtA; Rev 99.6 1.3E-14 2.9E-19 147.3 15.5 152 43-245 156-320 (424)
202 cd04110 Rab35 Rab35 subfamily. 99.6 1.4E-14 3E-19 134.1 14.3 152 44-245 5-160 (199)
203 cd04147 Ras_dva Ras-dva subfam 99.6 5.7E-15 1.2E-19 136.5 11.7 149 47-244 1-155 (198)
204 cd04118 Rab24 Rab24 subfamily. 99.6 1.1E-14 2.4E-19 133.9 13.5 155 46-245 1-159 (193)
205 cd01893 Miro1 Miro1 subfamily. 99.6 2.3E-14 5E-19 128.5 15.2 152 46-243 1-155 (166)
206 cd03696 selB_II selB_II: this 99.6 8.1E-15 1.7E-19 115.5 10.3 80 275-354 1-82 (83)
207 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.2E-14 2.7E-19 129.7 12.8 152 46-243 1-155 (164)
208 cd04176 Rap2 Rap2 subgroup. T 99.6 1.4E-14 2.9E-19 129.4 13.0 149 46-243 2-154 (163)
209 cd01871 Rac1_like Rac1-like su 99.6 2.4E-14 5.2E-19 129.6 14.7 153 46-243 2-166 (174)
210 cd04123 Rab21 Rab21 subfamily. 99.6 5.4E-15 1.2E-19 131.3 10.1 147 46-243 1-153 (162)
211 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 9.6E-15 2.1E-19 131.9 11.7 148 46-245 3-157 (172)
212 PLN03071 GTP-binding nuclear p 99.6 1.4E-14 3.1E-19 136.0 13.1 153 43-245 11-165 (219)
213 cd04177 RSR1 RSR1 subgroup. R 99.6 9.3E-15 2E-19 131.3 11.3 150 46-243 2-155 (168)
214 cd00157 Rho Rho (Ras homology) 99.6 1.2E-14 2.7E-19 130.5 12.1 157 46-243 1-164 (171)
215 COG0218 Predicted GTPase [Gene 99.6 2.6E-14 5.7E-19 127.8 13.8 153 44-243 23-188 (200)
216 cd03695 CysN_NodQ_II CysN_NodQ 99.6 1.7E-14 3.7E-19 112.7 11.1 79 275-355 1-81 (81)
217 smart00174 RHO Rho (Ras homolo 99.6 1.7E-14 3.7E-19 130.2 12.7 154 48-244 1-164 (174)
218 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.9E-14 4E-19 148.0 14.3 146 41-244 199-352 (442)
219 cd01874 Cdc42 Cdc42 subfamily. 99.6 3.3E-14 7.2E-19 128.7 14.3 153 46-243 2-166 (175)
220 KOG1423 Ras-like GTPase ERA [C 99.6 1.3E-14 2.9E-19 135.8 11.7 188 23-253 50-277 (379)
221 PLN03110 Rab GTPase; Provision 99.6 1.9E-14 4.1E-19 134.8 13.0 151 44-245 11-167 (216)
222 cd04137 RheB Rheb (Ras Homolog 99.6 1.8E-14 4E-19 130.8 11.9 149 46-245 2-156 (180)
223 cd00876 Ras Ras family. The R 99.6 1.2E-14 2.7E-19 128.7 10.3 146 47-243 1-152 (160)
224 cd00880 Era_like Era (E. coli 99.6 5.5E-14 1.2E-18 123.6 14.3 147 50-243 1-155 (163)
225 cd01892 Miro2 Miro2 subfamily. 99.6 2.8E-14 6.1E-19 128.4 12.5 155 43-244 2-158 (169)
226 cd04125 RabA_like RabA-like su 99.6 1.7E-14 3.7E-19 132.1 11.2 151 46-245 1-155 (188)
227 PLN03108 Rab family protein; P 99.6 1.7E-14 3.7E-19 134.6 11.2 152 45-244 6-160 (210)
228 PRK11058 GTPase HflX; Provisio 99.6 1.6E-14 3.5E-19 147.7 11.7 149 45-244 197-354 (426)
229 cd04132 Rho4_like Rho4-like su 99.6 4.1E-14 8.8E-19 129.4 13.3 153 46-245 1-160 (187)
230 cd04117 Rab15 Rab15 subfamily. 99.6 3.8E-14 8.3E-19 126.5 12.7 147 47-243 2-153 (161)
231 cd04143 Rhes_like Rhes_like su 99.6 3.2E-14 6.9E-19 135.7 12.9 146 47-243 2-162 (247)
232 cd01875 RhoG RhoG subfamily. 99.6 1.3E-13 2.7E-18 126.8 15.8 155 45-244 3-169 (191)
233 cd04111 Rab39 Rab39 subfamily. 99.5 3.5E-14 7.6E-19 132.6 11.9 152 45-245 2-159 (211)
234 cd04146 RERG_RasL11_like RERG/ 99.5 2.6E-14 5.7E-19 127.9 10.5 148 47-243 1-155 (165)
235 cd04134 Rho3 Rho3 subfamily. 99.5 8.8E-14 1.9E-18 127.6 13.9 154 46-244 1-166 (189)
236 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.1E-14 4.5E-19 129.7 9.5 158 46-244 1-166 (173)
237 cd01881 Obg_like The Obg-like 99.5 6.9E-14 1.5E-18 126.1 12.8 147 50-243 1-168 (176)
238 cd01876 YihA_EngB The YihA (En 99.5 1.9E-13 4.2E-18 121.8 15.4 148 48-243 2-162 (170)
239 cd03706 mtEFTU_III Domain III 99.5 1.3E-13 2.8E-18 111.1 12.3 88 363-469 3-93 (93)
240 TIGR00437 feoB ferrous iron tr 99.5 8.3E-14 1.8E-18 148.2 13.9 140 52-245 1-148 (591)
241 cd04133 Rop_like Rop subfamily 99.5 5.1E-14 1.1E-18 127.5 10.3 154 46-244 2-165 (176)
242 cd01870 RhoA_like RhoA-like su 99.5 1.4E-13 3.1E-18 124.3 12.8 156 46-243 2-166 (175)
243 cd04105 SR_beta Signal recogni 99.5 2.7E-13 5.8E-18 125.8 14.7 133 46-216 1-142 (203)
244 cd03708 GTPBP_III Domain III o 99.5 1.3E-13 2.8E-18 109.7 10.7 85 362-469 2-87 (87)
245 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 3.7E-13 8E-18 118.3 13.6 161 32-243 9-176 (221)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 5.5E-13 1.2E-17 121.4 15.4 156 42-243 2-171 (182)
247 smart00176 RAN Ran (Ras-relate 99.5 2.8E-13 6.1E-18 125.1 13.4 141 51-245 1-147 (200)
248 PRK09866 hypothetical protein; 99.5 1E-12 2.2E-17 135.9 18.4 110 122-244 229-345 (741)
249 cd03707 EFTU_III Domain III of 99.5 2.8E-13 6.1E-18 108.5 11.0 85 363-466 3-90 (90)
250 cd01896 DRG The developmentall 99.5 3E-13 6.4E-18 128.0 12.8 82 47-159 2-90 (233)
251 KOG0084 GTPase Rab1/YPT1, smal 99.5 2.7E-13 5.8E-18 119.6 11.4 153 45-243 9-163 (205)
252 COG0370 FeoB Fe2+ transport sy 99.5 3.3E-13 7.2E-18 140.1 13.8 146 45-244 3-156 (653)
253 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 7.9E-13 1.7E-17 124.5 15.1 158 43-245 11-181 (232)
254 KOG0073 GTP-binding ADP-ribosy 99.5 8.5E-13 1.8E-17 112.7 13.4 150 45-243 16-169 (185)
255 cd04148 RGK RGK subfamily. Th 99.5 3.8E-13 8.3E-18 126.5 12.0 151 46-245 1-156 (221)
256 KOG0078 GTP-binding protein SE 99.5 4E-13 8.8E-18 120.3 11.1 154 43-243 10-165 (207)
257 PF01926 MMR_HSR1: 50S ribosom 99.5 3.9E-13 8.6E-18 113.0 10.3 107 47-192 1-116 (116)
258 cd04131 Rnd Rnd subfamily. Th 99.5 9.8E-13 2.1E-17 119.4 13.7 152 46-243 2-167 (178)
259 cd00882 Ras_like_GTPase Ras-li 99.5 6.5E-13 1.4E-17 115.3 11.7 143 50-243 1-151 (157)
260 PF00071 Ras: Ras family; Int 99.4 3.9E-13 8.5E-18 119.7 9.8 150 47-243 1-152 (162)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.9E-12 4E-17 119.5 13.5 138 46-220 1-153 (196)
262 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 2E-12 4.3E-17 121.1 13.5 151 46-244 2-168 (222)
263 COG2262 HflX GTPases [General 99.4 5.4E-13 1.2E-17 130.8 9.2 164 27-245 174-349 (411)
264 KOG1489 Predicted GTP-binding 99.4 1.3E-12 2.8E-17 123.4 11.2 150 42-243 193-358 (366)
265 KOG1191 Mitochondrial GTPase [ 99.4 3.9E-13 8.5E-18 133.7 7.3 169 32-246 255-444 (531)
266 KOG0098 GTPase Rab2, small G p 99.4 1E-12 2.2E-17 114.6 8.7 153 45-244 6-160 (216)
267 cd04129 Rho2 Rho2 subfamily. 99.4 2.1E-12 4.6E-17 118.2 11.5 156 46-245 2-166 (187)
268 PTZ00132 GTP-binding nuclear p 99.4 6.5E-12 1.4E-16 117.6 14.9 153 41-243 5-159 (215)
269 PF09439 SRPRB: Signal recogni 99.4 2.2E-12 4.8E-17 115.5 10.6 112 45-199 3-128 (181)
270 KOG0075 GTP-binding ADP-ribosy 99.4 1.7E-12 3.7E-17 108.6 8.6 149 44-243 19-173 (186)
271 cd04103 Centaurin_gamma Centau 99.4 2.4E-12 5.1E-17 114.6 10.2 144 46-243 1-150 (158)
272 KOG0394 Ras-related GTPase [Ge 99.4 2.2E-12 4.7E-17 112.4 9.3 157 41-243 5-169 (210)
273 cd04104 p47_IIGP_like p47 (47- 99.4 5.8E-12 1.3E-16 116.3 12.9 154 46-242 2-174 (197)
274 KOG1532 GTPase XAB1, interacts 99.4 7E-13 1.5E-17 122.4 6.3 203 39-244 13-256 (366)
275 COG1163 DRG Predicted GTPase [ 99.4 1.6E-12 3.4E-17 123.3 8.8 87 43-160 61-154 (365)
276 KOG0070 GTP-binding ADP-ribosy 99.4 3.6E-12 7.7E-17 111.8 9.5 153 41-243 13-169 (181)
277 COG1084 Predicted GTPase [Gene 99.3 1.2E-11 2.5E-16 118.0 12.4 152 44-243 167-327 (346)
278 KOG0076 GTP-binding ADP-ribosy 99.3 5.9E-12 1.3E-16 108.6 7.8 164 42-243 14-178 (197)
279 COG3596 Predicted GTPase [Gene 99.3 3.6E-11 7.9E-16 112.1 13.2 160 39-243 33-213 (296)
280 cd01873 RhoBTB RhoBTB subfamil 99.3 5.1E-11 1.1E-15 109.7 14.0 108 121-243 64-187 (195)
281 KOG0095 GTPase Rab30, small G 99.3 2.8E-11 6E-16 101.5 10.3 152 43-243 5-160 (213)
282 cd04102 RabL3 RabL3 (Rab-like3 99.3 1.1E-10 2.3E-15 107.9 15.2 114 46-195 1-141 (202)
283 PF08477 Miro: Miro-like prote 99.3 9.9E-12 2.2E-16 104.7 7.6 114 47-194 1-119 (119)
284 PLN00023 GTP-binding protein; 99.3 7.7E-11 1.7E-15 114.5 14.1 148 39-222 15-190 (334)
285 KOG0087 GTPase Rab11/YPT3, sma 99.3 8.8E-12 1.9E-16 111.2 6.7 151 45-244 14-168 (222)
286 cd01850 CDC_Septin CDC/Septin. 99.3 1.2E-10 2.6E-15 112.9 15.1 143 45-221 4-177 (276)
287 KOG0090 Signal recognition par 99.2 8.1E-11 1.8E-15 105.3 12.3 130 45-216 38-178 (238)
288 COG0536 Obg Predicted GTPase [ 99.2 3.5E-11 7.5E-16 115.2 10.1 154 43-245 157-326 (369)
289 KOG0086 GTPase Rab4, small G p 99.2 2.7E-11 5.9E-16 102.0 8.1 149 46-243 10-162 (214)
290 KOG0080 GTPase Rab18, small G 99.2 2E-11 4.3E-16 103.8 7.1 151 45-243 11-165 (209)
291 cd03688 eIF2_gamma_II eIF2_gam 99.2 1.5E-10 3.3E-15 93.3 11.6 86 271-356 2-112 (113)
292 COG1100 GTPase SAR1 and relate 99.2 2.2E-10 4.7E-15 107.4 14.5 160 45-244 5-177 (219)
293 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2.8E-10 6.2E-15 106.5 14.2 153 47-236 1-161 (232)
294 cd04094 selB_III This family r 99.2 3.1E-10 6.7E-15 92.1 11.5 95 350-466 1-97 (97)
295 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 3.9E-10 8.5E-15 88.7 11.3 76 277-354 3-83 (84)
296 cd01853 Toc34_like Toc34-like 99.2 9.3E-10 2E-14 104.8 15.6 140 40-215 26-187 (249)
297 KOG0093 GTPase Rab3, small G p 99.1 6.1E-11 1.3E-15 99.4 6.1 155 46-245 22-176 (193)
298 KOG0088 GTPase Rab21, small G 99.1 2.6E-10 5.7E-15 96.7 7.8 153 45-245 13-168 (218)
299 PRK09435 membrane ATPase/prote 99.1 1.6E-09 3.4E-14 106.9 14.4 107 120-245 146-253 (332)
300 COG4917 EutP Ethanolamine util 99.1 3.3E-10 7.2E-15 92.6 7.9 132 46-243 2-137 (148)
301 cd01899 Ygr210 Ygr210 subfamil 99.1 2.4E-09 5.1E-14 105.5 15.6 36 123-158 69-111 (318)
302 PTZ00099 rab6; Provisional 99.1 3.6E-10 7.8E-15 102.3 8.6 106 121-245 27-135 (176)
303 PF03029 ATP_bind_1: Conserved 99.1 1.2E-10 2.6E-15 110.2 4.9 113 123-243 91-228 (238)
304 KOG0071 GTP-binding ADP-ribosy 99.1 3.3E-09 7.2E-14 88.4 12.4 149 44-242 16-168 (180)
305 KOG0079 GTP-binding protein H- 99.0 5.6E-10 1.2E-14 93.7 7.7 150 47-244 10-161 (198)
306 KOG0077 Vesicle coat complex C 99.0 2.1E-09 4.6E-14 92.3 11.0 123 43-207 18-144 (193)
307 KOG0097 GTPase Rab14, small G 99.0 2.3E-09 5E-14 89.2 10.7 150 45-243 11-164 (215)
308 COG5192 BMS1 GTP-binding prote 99.0 1.5E-08 3.3E-13 102.1 18.5 145 42-236 66-210 (1077)
309 PRK13768 GTPase; Provisional 99.0 2.1E-09 4.6E-14 103.0 11.3 109 122-243 96-238 (253)
310 KOG0395 Ras-related GTPase [Ge 99.0 2E-09 4.3E-14 98.8 9.6 151 44-243 2-156 (196)
311 KOG0074 GTP-binding ADP-ribosy 99.0 3.3E-09 7E-14 88.5 8.6 153 41-243 13-170 (185)
312 PF03144 GTP_EFTU_D2: Elongati 98.9 5E-09 1.1E-13 80.4 8.4 68 287-354 1-74 (74)
313 PF04548 AIG1: AIG1 family; I 98.9 1.5E-08 3.3E-13 94.6 13.1 147 46-235 1-163 (212)
314 PF05049 IIGP: Interferon-indu 98.9 4.5E-09 9.8E-14 104.4 9.9 151 42-236 32-200 (376)
315 PRK09602 translation-associate 98.9 2.6E-08 5.7E-13 101.1 15.5 35 123-157 72-113 (396)
316 KOG0091 GTPase Rab39, small G 98.9 5.4E-09 1.2E-13 89.4 8.5 150 45-245 8-166 (213)
317 PTZ00258 GTP-binding protein; 98.9 3E-08 6.4E-13 99.7 15.2 84 43-157 19-126 (390)
318 TIGR00073 hypB hydrogenase acc 98.9 1.1E-08 2.3E-13 95.3 11.1 97 122-243 102-198 (207)
319 TIGR00750 lao LAO/AO transport 98.9 2.9E-08 6.3E-13 97.7 14.1 103 120-245 124-231 (300)
320 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.9E-08 8.5E-13 95.2 13.7 118 43-196 36-166 (313)
321 TIGR02836 spore_IV_A stage IV 98.9 4.4E-08 9.5E-13 97.1 14.2 137 39-195 11-192 (492)
322 KOG0083 GTPase Rab26/Rab37, sm 98.8 3.5E-10 7.6E-15 93.1 -0.7 105 120-243 44-151 (192)
323 smart00053 DYNc Dynamin, GTPas 98.8 1.1E-08 2.4E-13 96.4 9.0 67 123-197 125-206 (240)
324 cd01342 Translation_Factor_II_ 98.8 3.9E-08 8.4E-13 76.3 10.6 78 275-354 1-82 (83)
325 KOG0072 GTP-binding ADP-ribosy 98.8 6.8E-09 1.5E-13 86.9 6.5 150 44-243 17-170 (182)
326 KOG0081 GTPase Rab27, small G 98.8 1.5E-09 3.3E-14 92.2 2.6 105 123-245 67-174 (219)
327 PF00350 Dynamin_N: Dynamin fa 98.8 9.8E-09 2.1E-13 92.0 7.4 66 121-193 99-168 (168)
328 PRK10463 hydrogenase nickel in 98.8 1.1E-08 2.4E-13 98.3 6.6 29 40-68 99-127 (290)
329 PF14578 GTP_EFTU_D4: Elongati 98.7 2E-07 4.3E-12 71.4 10.9 76 273-354 3-80 (81)
330 KOG3886 GTP-binding protein [S 98.7 3.5E-08 7.6E-13 89.5 7.7 153 45-236 4-163 (295)
331 PF03308 ArgK: ArgK protein; 98.7 4E-07 8.6E-12 85.3 13.8 170 43-245 27-223 (266)
332 PF00735 Septin: Septin; Inte 98.7 3.2E-07 7E-12 89.0 13.3 143 45-222 4-177 (281)
333 KOG0410 Predicted GTP binding 98.7 5.7E-08 1.2E-12 92.4 7.6 147 38-243 171-332 (410)
334 TIGR00101 ureG urease accessor 98.6 3.3E-07 7.1E-12 84.6 11.7 97 122-243 91-187 (199)
335 cd04092 mtEFG2_II_like mtEFG2_ 98.6 3.6E-07 7.9E-12 71.7 9.7 75 277-355 3-83 (83)
336 COG1703 ArgK Putative periplas 98.6 2.1E-07 4.6E-12 88.2 9.8 103 121-245 142-247 (323)
337 cd03690 Tet_II Tet_II: This su 98.6 3.1E-07 6.6E-12 72.5 9.2 77 273-354 2-84 (85)
338 cd04088 EFG_mtEFG_II EFG_mtEFG 98.6 4.9E-07 1.1E-11 71.0 9.9 75 277-355 3-83 (83)
339 KOG2486 Predicted GTPase [Gene 98.6 3.3E-07 7.2E-12 85.7 9.9 160 43-244 134-308 (320)
340 KOG4252 GTP-binding protein [S 98.6 1.2E-08 2.5E-13 88.6 -0.0 154 43-244 18-173 (246)
341 cd03699 lepA_II lepA_II: This 98.6 9.1E-07 2E-11 70.0 10.7 79 276-355 2-86 (86)
342 cd01900 YchF YchF subfamily. 98.6 1.5E-07 3.3E-12 90.6 7.4 80 48-158 1-104 (274)
343 TIGR00993 3a0901s04IAP86 chlor 98.5 1.4E-06 3.1E-11 91.3 14.4 117 45-197 118-250 (763)
344 PRK09601 GTP-binding protein Y 98.5 2.9E-07 6.2E-12 91.6 8.8 82 46-158 3-108 (364)
345 cd03691 BipA_TypA_II BipA_TypA 98.5 1.2E-06 2.7E-11 69.2 10.6 76 275-354 1-85 (86)
346 KOG1486 GTP-binding protein DR 98.5 3.6E-07 7.7E-12 84.0 8.2 86 44-160 61-153 (364)
347 COG0378 HypB Ni2+-binding GTPa 98.5 6.9E-07 1.5E-11 79.8 9.4 94 123-243 97-192 (202)
348 cd04091 mtEFG1_II_like mtEFG1_ 98.5 1.7E-06 3.7E-11 67.6 10.2 64 286-354 13-80 (81)
349 cd03689 RF3_II RF3_II: this su 98.4 1.2E-06 2.6E-11 69.0 8.6 67 285-355 14-84 (85)
350 KOG0448 Mitofusin 1 GTPase, in 98.4 3.4E-06 7.4E-11 87.8 13.5 100 124-235 207-309 (749)
351 KOG1707 Predicted Ras related/ 98.4 1.1E-06 2.4E-11 89.8 8.8 157 41-243 5-166 (625)
352 KOG1673 Ras GTPases [General f 98.4 2.3E-06 5E-11 72.8 9.0 157 41-243 16-177 (205)
353 KOG1547 Septin CDC10 and relat 98.4 8.6E-06 1.9E-10 74.6 13.1 143 45-222 46-219 (336)
354 COG5019 CDC3 Septin family pro 98.3 1.2E-05 2.6E-10 78.5 14.0 146 43-221 21-196 (373)
355 KOG1490 GTP-binding protein CR 98.3 3.1E-06 6.8E-11 85.1 9.4 152 43-243 166-332 (620)
356 cd01851 GBP Guanylate-binding 98.3 1.4E-05 3E-10 75.2 13.3 94 41-159 3-104 (224)
357 PRK10416 signal recognition pa 98.3 1.5E-05 3.2E-10 78.8 14.0 94 121-243 195-301 (318)
358 PRK14974 cell division protein 98.3 3.8E-05 8.2E-10 76.2 16.8 94 121-243 221-321 (336)
359 KOG3883 Ras family small GTPas 98.3 3E-05 6.5E-10 66.1 13.6 148 44-242 8-165 (198)
360 cd01858 NGP_1 NGP-1. Autoanti 98.3 9.6E-07 2.1E-11 78.3 5.0 24 44-67 101-124 (157)
361 COG0012 Predicted GTPase, prob 98.3 1.1E-05 2.4E-10 79.3 12.3 91 45-158 2-109 (372)
362 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 3.9E-06 8.5E-11 74.1 7.7 148 43-243 8-160 (216)
363 TIGR01425 SRP54_euk signal rec 98.2 1.1E-05 2.3E-10 82.2 11.7 64 121-195 181-251 (429)
364 cd04178 Nucleostemin_like Nucl 98.2 1.7E-06 3.6E-11 77.9 5.0 58 43-133 115-172 (172)
365 TIGR00064 ftsY signal recognit 98.2 5.6E-05 1.2E-09 73.2 15.5 64 121-195 153-229 (272)
366 KOG0393 Ras-related small GTPa 98.2 5.8E-06 1.3E-10 74.8 8.0 156 44-243 3-170 (198)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 1.6E-05 3.4E-10 69.2 10.2 80 138-239 3-84 (141)
368 cd01859 MJ1464 MJ1464. This f 98.2 1.5E-05 3.3E-10 70.4 10.3 80 142-243 8-87 (156)
369 cd03700 eEF2_snRNP_like_II EF2 98.1 2.1E-05 4.5E-10 63.1 9.7 66 285-354 14-92 (93)
370 smart00275 G_alpha G protein a 98.1 2.8E-05 6E-10 77.8 10.9 88 107-195 168-263 (342)
371 PF00448 SRP54: SRP54-type pro 98.1 2.9E-05 6.3E-10 71.4 10.1 66 121-196 82-153 (196)
372 cd01849 YlqF_related_GTPase Yl 98.0 5.6E-06 1.2E-10 73.2 5.1 58 43-133 98-155 (155)
373 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.7E-05 5.8E-10 69.0 9.5 83 140-243 2-86 (157)
374 KOG1487 GTP-binding protein DR 98.0 4.7E-06 1E-10 77.1 4.2 85 45-160 59-150 (358)
375 cd01856 YlqF YlqF. Proteins o 98.0 3E-05 6.4E-10 69.8 9.3 91 130-244 2-93 (171)
376 cd01855 YqeH YqeH. YqeH is an 98.0 3E-05 6.5E-10 71.0 9.4 94 135-243 23-116 (190)
377 PF03193 DUF258: Protein of un 97.9 4.6E-06 1E-10 73.4 2.5 22 46-67 36-57 (161)
378 cd03115 SRP The signal recogni 97.9 7.1E-05 1.5E-09 67.4 10.3 65 121-196 81-152 (173)
379 KOG2655 Septin family protein 97.9 0.00011 2.4E-09 72.5 12.1 142 45-221 21-192 (366)
380 cd01855 YqeH YqeH. YqeH is an 97.9 1E-05 2.3E-10 74.0 4.8 64 45-133 127-190 (190)
381 cd04090 eEF2_II_snRNP Loc2 eEF 97.9 0.00013 2.8E-09 58.7 10.3 66 277-344 3-84 (94)
382 PRK11889 flhF flagellar biosyn 97.9 6.9E-05 1.5E-09 74.9 9.8 64 122-195 320-389 (436)
383 KOG3905 Dynein light intermedi 97.9 0.00019 4.1E-09 68.8 12.2 55 181-242 221-280 (473)
384 PRK14722 flhF flagellar biosyn 97.9 5.7E-05 1.2E-09 75.8 8.8 66 120-195 213-293 (374)
385 TIGR03596 GTPase_YlqF ribosome 97.9 6.5E-05 1.4E-09 73.1 9.0 90 131-244 5-95 (276)
386 TIGR00487 IF-2 translation ini 97.8 0.0003 6.6E-09 75.2 14.5 181 126-355 390-576 (587)
387 COG1161 Predicted GTPases [Gen 97.8 1.8E-05 3.8E-10 78.5 4.7 58 42-132 129-186 (322)
388 cd03114 ArgK-like The function 97.8 1.9E-05 4.2E-10 69.2 4.4 59 121-194 90-148 (148)
389 PF05783 DLIC: Dynein light in 97.8 0.00011 2.3E-09 76.1 10.4 55 181-242 195-254 (472)
390 PRK05306 infB translation init 97.8 0.00044 9.5E-09 76.0 15.6 180 127-355 593-778 (787)
391 cd01849 YlqF_related_GTPase Yl 97.8 0.00012 2.5E-09 64.7 9.3 76 148-244 1-77 (155)
392 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.2E-05 4.8E-10 68.2 4.3 20 47-66 85-104 (141)
393 PRK12288 GTPase RsgA; Reviewed 97.8 2.4E-05 5.1E-10 78.3 5.0 21 47-67 207-227 (347)
394 TIGR00157 ribosome small subun 97.8 5.5E-05 1.2E-09 72.2 7.1 84 142-244 32-115 (245)
395 KOG1954 Endocytosis/signaling 97.8 0.00014 3E-09 70.9 9.6 131 46-195 59-223 (532)
396 CHL00189 infB translation init 97.8 0.00052 1.1E-08 74.8 15.2 182 125-355 546-732 (742)
397 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.7E-05 8.1E-10 75.2 5.9 58 43-133 119-176 (287)
398 PRK12289 GTPase RsgA; Reviewed 97.8 0.00011 2.4E-09 73.5 9.2 81 144-244 87-167 (352)
399 KOG0082 G-protein alpha subuni 97.7 0.00027 5.9E-09 69.7 11.4 87 106-195 178-274 (354)
400 TIGR03596 GTPase_YlqF ribosome 97.7 3.9E-05 8.4E-10 74.6 5.5 23 44-66 117-139 (276)
401 TIGR00157 ribosome small subun 97.7 4E-05 8.7E-10 73.1 5.2 22 46-67 121-142 (245)
402 cd01856 YlqF YlqF. Proteins o 97.7 4.9E-05 1.1E-09 68.4 5.2 57 44-133 114-170 (171)
403 PRK05703 flhF flagellar biosyn 97.7 0.00052 1.1E-08 70.7 13.4 65 121-195 298-369 (424)
404 PRK12727 flagellar biosynthesi 97.7 0.00069 1.5E-08 70.4 14.2 64 121-195 427-496 (559)
405 cd03112 CobW_like The function 97.7 7.2E-05 1.6E-09 66.4 6.0 22 47-68 2-23 (158)
406 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00015 3.2E-09 71.0 8.6 91 130-244 7-98 (287)
407 PRK12724 flagellar biosynthesi 97.7 0.00036 7.7E-09 70.7 11.2 65 121-195 298-371 (432)
408 PRK00098 GTPase RsgA; Reviewed 97.7 0.00014 3.1E-09 71.4 8.2 81 144-243 78-158 (298)
409 PRK00771 signal recognition pa 97.7 0.00029 6.3E-09 72.4 10.7 62 123-195 176-244 (437)
410 PRK12723 flagellar biosynthesi 97.6 0.0003 6.5E-09 71.2 10.4 65 121-195 253-324 (388)
411 TIGR00092 GTP-binding protein 97.6 0.00016 3.6E-09 72.1 8.3 36 123-158 67-109 (368)
412 PRK14721 flhF flagellar biosyn 97.6 0.00021 4.6E-09 72.8 9.2 66 120-195 267-338 (420)
413 KOG2485 Conserved ATP/GTP bind 97.6 7.2E-05 1.6E-09 71.5 5.2 66 42-132 140-205 (335)
414 COG1162 Predicted GTPases [Gen 97.6 6.4E-05 1.4E-09 72.4 4.6 21 46-66 165-185 (301)
415 COG1419 FlhF Flagellar GTP-bin 97.6 0.00027 5.9E-09 70.6 9.1 132 43-196 201-351 (407)
416 TIGR03597 GTPase_YqeH ribosome 97.6 7.4E-05 1.6E-09 75.4 5.3 89 46-162 155-253 (360)
417 PRK13796 GTPase YqeH; Provisio 97.6 6.9E-05 1.5E-09 75.8 4.9 60 46-133 161-220 (365)
418 PF00503 G-alpha: G-protein al 97.5 0.00045 9.8E-09 70.7 10.2 86 107-195 219-315 (389)
419 PRK12726 flagellar biosynthesi 97.5 0.00041 8.9E-09 69.3 9.4 64 122-195 285-354 (407)
420 COG3640 CooC CO dehydrogenase 97.5 0.00067 1.5E-08 62.6 10.0 65 121-195 132-197 (255)
421 PRK10867 signal recognition pa 97.5 0.00039 8.5E-09 71.3 9.6 64 121-195 182-252 (433)
422 PRK06731 flhF flagellar biosyn 97.5 0.00029 6.2E-09 67.9 8.1 64 122-195 154-223 (270)
423 PRK12289 GTPase RsgA; Reviewed 97.5 9.5E-05 2.1E-09 74.0 4.9 21 47-67 174-194 (352)
424 TIGR00959 ffh signal recogniti 97.5 0.00021 4.6E-09 73.2 7.2 64 121-195 181-251 (428)
425 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00014 3.1E-09 71.0 5.4 22 46-67 162-183 (287)
426 KOG1534 Putative transcription 97.5 0.00023 5.1E-09 64.2 6.1 72 122-196 97-177 (273)
427 cd02036 MinD Bacterial cell di 97.5 0.00095 2.1E-08 60.0 10.4 63 124-195 64-126 (179)
428 TIGR03597 GTPase_YqeH ribosome 97.4 0.00067 1.5E-08 68.5 9.6 97 133-245 50-146 (360)
429 COG0541 Ffh Signal recognition 97.4 0.00093 2E-08 67.1 10.3 138 38-195 93-251 (451)
430 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.0005 1.1E-08 67.2 8.4 80 144-243 76-155 (287)
431 cd03111 CpaE_like This protein 97.4 0.0014 3.1E-08 53.8 9.7 60 124-192 44-106 (106)
432 KOG1533 Predicted GTPase [Gene 97.4 0.001 2.2E-08 61.2 8.9 72 121-196 95-176 (290)
433 KOG3887 Predicted small GTPase 97.4 0.00031 6.8E-09 64.6 5.6 153 46-235 28-186 (347)
434 cd01859 MJ1464 MJ1464. This f 97.4 0.00025 5.4E-09 62.6 5.0 23 44-66 100-122 (156)
435 cd02038 FleN-like FleN is a me 97.4 0.0013 2.9E-08 56.9 9.4 64 123-195 45-109 (139)
436 KOG0780 Signal recognition par 97.3 0.0011 2.3E-08 65.3 8.8 66 118-195 179-252 (483)
437 KOG1491 Predicted GTP-binding 97.3 0.00054 1.2E-08 66.3 6.5 37 123-159 84-127 (391)
438 PRK12288 GTPase RsgA; Reviewed 97.3 0.0011 2.3E-08 66.5 8.9 82 144-243 118-199 (347)
439 cd03702 IF2_mtIF2_II This fami 97.3 0.0024 5.2E-08 51.1 9.1 75 277-356 3-80 (95)
440 PRK06995 flhF flagellar biosyn 97.3 0.00033 7.2E-09 72.6 5.2 66 120-195 332-403 (484)
441 PRK01889 GTPase RsgA; Reviewed 97.2 0.0012 2.5E-08 66.6 8.6 79 144-243 110-188 (356)
442 PRK11537 putative GTP-binding 97.2 0.0041 8.8E-08 61.6 11.8 25 44-68 3-27 (318)
443 COG0532 InfB Translation initi 97.2 0.012 2.6E-07 60.7 15.3 77 277-355 416-497 (509)
444 PRK13796 GTPase YqeH; Provisio 97.2 0.0021 4.6E-08 65.0 9.8 94 135-245 58-152 (365)
445 KOG4423 GTP-binding protein-li 97.2 6.3E-05 1.4E-09 66.3 -1.1 151 45-243 25-185 (229)
446 KOG4181 Uncharacterized conser 97.1 0.0085 1.8E-07 58.2 12.9 25 42-66 185-209 (491)
447 PRK08099 bifunctional DNA-bind 97.1 0.0028 6E-08 64.8 10.0 33 41-73 215-247 (399)
448 cd03110 Fer4_NifH_child This p 97.1 0.0033 7.1E-08 56.8 9.4 65 121-195 91-155 (179)
449 PRK00098 GTPase RsgA; Reviewed 97.1 0.00061 1.3E-08 67.0 4.8 21 46-66 165-185 (298)
450 PRK14723 flhF flagellar biosyn 97.1 0.0034 7.3E-08 68.4 10.6 23 45-67 185-207 (767)
451 TIGR00491 aIF-2 translation in 97.0 0.014 3.1E-07 62.5 14.9 76 281-356 473-550 (590)
452 cd00066 G-alpha G protein alph 97.0 0.0013 2.9E-08 65.1 6.7 86 107-195 145-240 (317)
453 PF02492 cobW: CobW/HypB/UreG, 97.0 0.0018 4E-08 58.5 7.0 65 122-195 84-153 (178)
454 KOG0447 Dynamin-like GTP bindi 97.0 0.0024 5.2E-08 65.2 8.2 85 107-197 393-493 (980)
455 COG1162 Predicted GTPases [Gen 97.0 0.0031 6.7E-08 60.9 8.6 81 145-243 78-158 (301)
456 PF09547 Spore_IV_A: Stage IV 97.0 0.021 4.5E-07 57.5 14.5 30 39-68 11-40 (492)
457 COG0552 FtsY Signal recognitio 96.9 0.013 2.8E-07 57.2 12.3 27 42-68 136-162 (340)
458 TIGR02475 CobW cobalamin biosy 96.9 0.01 2.3E-07 59.3 11.5 24 45-68 4-27 (341)
459 cd03703 aeIF5B_II aeIF5B_II: T 96.8 0.012 2.6E-07 48.2 9.4 77 277-355 3-94 (110)
460 cd02042 ParA ParA and ParB of 96.8 0.0069 1.5E-07 49.3 8.0 36 123-160 40-75 (104)
461 cd03701 IF2_IF5B_II IF2_IF5B_I 96.8 0.0079 1.7E-07 48.3 8.0 73 277-354 3-78 (95)
462 KOG2484 GTPase [General functi 96.7 0.0011 2.4E-08 65.5 3.1 60 41-133 248-307 (435)
463 KOG1424 Predicted GTP-binding 96.7 0.0015 3.2E-08 66.6 3.7 27 41-67 310-336 (562)
464 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.024 5.3E-07 44.7 9.9 70 48-160 2-72 (99)
465 KOG2423 Nucleolar GTPase [Gene 96.5 0.0017 3.6E-08 64.0 3.0 38 29-66 291-328 (572)
466 CHL00175 minD septum-site dete 96.5 0.014 3E-07 56.8 9.4 65 122-195 126-190 (281)
467 TIGR03348 VI_IcmF type VI secr 96.4 0.0047 1E-07 71.7 6.3 19 46-64 112-130 (1169)
468 COG0523 Putative GTPases (G3E 96.4 0.021 4.4E-07 56.6 9.9 91 123-234 85-184 (323)
469 PRK10751 molybdopterin-guanine 96.3 0.014 3E-07 52.3 7.0 25 43-67 4-28 (173)
470 KOG2743 Cobalamin synthesis pr 96.2 0.045 9.9E-07 52.4 10.5 27 41-67 53-79 (391)
471 PRK04004 translation initiatio 96.2 0.097 2.1E-06 56.3 14.2 75 281-355 475-551 (586)
472 PRK14845 translation initiatio 96.2 0.099 2.1E-06 59.4 14.7 76 281-356 931-1008(1049)
473 PF06858 NOG1: Nucleolar GTP-b 96.1 0.015 3.3E-07 41.4 5.2 48 139-194 5-58 (58)
474 cd04178 Nucleostemin_like Nucl 95.9 0.025 5.5E-07 50.8 7.0 40 148-195 1-42 (172)
475 PRK13695 putative NTPase; Prov 95.7 0.023 5E-07 51.0 6.2 21 47-67 2-22 (174)
476 KOG1707 Predicted Ras related/ 95.7 0.048 1.1E-06 56.7 9.0 150 36-235 416-567 (625)
477 KOG1144 Translation initiation 95.7 0.096 2.1E-06 55.9 11.0 69 274-342 935-1008(1064)
478 PF13555 AAA_29: P-loop contai 95.7 0.012 2.6E-07 43.0 3.2 21 47-67 25-45 (62)
479 PF13207 AAA_17: AAA domain; P 95.6 0.013 2.8E-07 49.0 3.8 24 47-70 1-24 (121)
480 PRK01889 GTPase RsgA; Reviewed 95.6 0.0093 2E-07 60.1 3.4 22 46-67 196-217 (356)
481 cd02037 MRP-like MRP (Multiple 95.6 0.035 7.5E-07 49.6 6.8 66 121-195 66-133 (169)
482 PF09173 eIF2_C: Initiation fa 95.6 0.19 4.1E-06 39.4 9.8 74 365-466 3-88 (88)
483 KOG3859 Septins (P-loop GTPase 95.6 0.061 1.3E-06 50.9 8.2 137 44-221 41-210 (406)
484 PHA00729 NTP-binding motif con 95.3 0.019 4E-07 53.6 3.9 26 44-69 16-41 (226)
485 cd03116 MobB Molybdenum is an 95.2 0.053 1.2E-06 48.0 6.5 21 46-66 2-22 (159)
486 PF00437 T2SE: Type II/IV secr 95.2 0.029 6.2E-07 54.3 5.1 24 44-67 126-149 (270)
487 COG0563 Adk Adenylate kinase a 95.2 0.02 4.2E-07 51.8 3.6 25 47-71 2-26 (178)
488 PRK08118 topology modulation p 95.0 0.022 4.8E-07 50.9 3.5 25 46-70 2-26 (167)
489 PRK07261 topology modulation p 95.0 0.022 4.7E-07 51.2 3.5 21 47-67 2-22 (171)
490 PRK13833 conjugal transfer pro 95.0 0.066 1.4E-06 53.0 7.0 23 45-67 144-166 (323)
491 PF13671 AAA_33: AAA domain; P 95.0 0.022 4.8E-07 49.0 3.4 23 48-70 2-24 (143)
492 cd02019 NK Nucleoside/nucleoti 95.0 0.021 4.6E-07 42.8 2.7 19 48-66 2-20 (69)
493 TIGR02782 TrbB_P P-type conjug 94.9 0.065 1.4E-06 52.7 6.8 24 44-67 131-154 (299)
494 TIGR00235 udk uridine kinase. 94.9 0.029 6.4E-07 51.9 4.2 28 42-69 3-30 (207)
495 cd03238 ABC_UvrA The excision 94.9 0.022 4.7E-07 51.4 3.1 24 45-68 21-44 (176)
496 PF03205 MobB: Molybdopterin g 94.8 0.031 6.6E-07 48.4 3.7 22 46-67 1-22 (140)
497 COG1763 MobB Molybdopterin-gua 94.7 0.051 1.1E-06 48.0 5.0 22 45-66 2-23 (161)
498 KOG1424 Predicted GTP-binding 94.7 0.14 2.9E-06 52.7 8.5 81 135-236 163-244 (562)
499 COG1618 Predicted nucleotide k 94.7 0.099 2.1E-06 45.8 6.5 24 43-66 3-26 (179)
500 PRK08233 hypothetical protein; 94.6 0.033 7.1E-07 50.1 3.6 26 45-70 3-28 (182)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-97 Score=714.64 Aligned_cols=423 Identities=45% Similarity=0.799 Sum_probs=409.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..|+++|++++||+|||||||+|+|+|.+|.++.+.|+++++++.+.|+.||+++|+||.+++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
+.+.++|+|||||.+|+++|+.|+++||+|||||||..+.||+||..++||+||+.+++.+|+.++||++||||. .+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 779
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 280 (476)
++++|+++++++..+++.+||++. +++|+|+||++|+|+.+..+ .+|||+||||++.|+.+..|.+..++|||++|.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999853 79999999999999999774 699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 281 ~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
++| .+.|++..|||++|.|++||+|++.|++...+|+||++++++++.|.|||.|++++++++..||++|++++++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011836 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
++..+..|.|++.+++. +..|.+||+|++|+|+...+|++.+|.+++|+.+|+..+++|.++++|+.+.|.+++.+|+
T Consensus 318 ~~t~s~~f~a~i~vl~~--p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 318 PPTVSPEFTAQIIVLWH--PGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred CcccccceEEEEEEEec--CccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCce
Confidence 99999999999999542 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 439 ~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
|++++++++.||||+|||.|+|||+|+|.++.
T Consensus 396 ~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 396 CLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred EeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 99999999999999999999999999999875
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=8.7e-86 Score=674.90 Aligned_cols=429 Identities=36% Similarity=0.652 Sum_probs=404.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+|+++||+++||+|||||||+++|++.+|.++.+.+.++++++.+.|+.++.|+|++|..++||+||+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 36889999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.++|+|||||.+|+++|+.+++.+|++||||||.+|.||+++...+||++|+.++..+|+|++||++||||+...+|
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999999999987899999999999999998999999999865578
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 280 (476)
++++|+++.++++.++++.||+. .+++++|+||++|+|+.+... .++||+|++|++.|+.++.|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~--~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERST--NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEecccccccccccc--CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 89999999999999999999863 357999999999999988655 389999999999999998888888999999999
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCC-
Q 011836 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 357 (476)
Q Consensus 281 ~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~- 357 (476)
++| ++.|+|++|+|.+|.|++||.|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|+||+++.
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~ 319 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKD 319 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCC
Confidence 999 57899999999999999999999999999999999999999999999999999999999889999999999974
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011836 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
+|+..+++|+|+|.||+. ..++..||++.+|+++.+++|+|.+|.+++|+++|+..+++|++|++|+.|.|+|++.+|
T Consensus 320 ~p~~~~~~F~A~i~~l~~--~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 320 DPAKEAANFTSQVIIMNH--PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred CCCccccEEEEEEEEECC--CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 677889999999999542 278999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 011836 438 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 438 i~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~~~ 474 (476)
+|+|+|++++.||||+||++|.|+|+|.|+++...++
T Consensus 398 i~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 9999999999999999999999999999999887544
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.4e-84 Score=663.71 Aligned_cols=428 Identities=39% Similarity=0.708 Sum_probs=403.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++.+|.+++++++++++++.+.|+.++.|+|++|..++|++||+|++.+...|++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
+++.++|||||||.+|+++|+++++.+|++||||||.+|+||++|+..+||++|+.++..+|+|++||++||||++.++|
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999999999987789999999999999999999999999766889
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 280 (476)
++++|+++.+++..+|+.+|++. .++++||+|+++|+|+.+... .++||+|++|++.|+.++.|.+..++|+||+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 99999999999999999999862 368999999999999987654 489999999999999988888888899999999
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCC-
Q 011836 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 357 (476)
Q Consensus 281 ~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~- 357 (476)
++| ++.|++++|+|.+|.|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++||+|++++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~ 319 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKN 319 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCC
Confidence 999 57899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011836 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
.|+..+++|+|+|.||+. ..+|+.||++++|+++.+++|+|..|.+++|+++++..+++|++|++|+.+.|+|++++|
T Consensus 320 ~p~~~~~~f~a~i~~l~~--~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 397 (446)
T PTZ00141 320 DPAKECADFTAQVIVLNH--PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKP 397 (446)
T ss_pred CCCccceEEEEEEEEECC--CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCc
Confidence 566789999999999552 268999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCC
Q 011836 438 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 473 (476)
Q Consensus 438 i~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~~ 473 (476)
+|+++|++|+.+|||+||++|.|+|+|.|+++...+
T Consensus 398 i~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~ 433 (446)
T PTZ00141 398 MCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE 433 (446)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEEecCC
Confidence 999999999999999999999999999999988654
No 4
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-84 Score=619.21 Aligned_cols=429 Identities=60% Similarity=0.993 Sum_probs=416.0
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
....++.+.|++++||+++||||+-+.+++.+|.++.+.+++|.+++++.+|.+++++|.||+..+||..|-|+..+..+
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~ 151 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY 151 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE
Confidence 33456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
|++..++++++|+|||..|..+|+.|+++||.++||++|..|.||++|+.++||++|..+++.+++.|+||++||||-+.
T Consensus 152 FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 152 FETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred EEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceE
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 277 (476)
++|++++|+++++++..+|+.+||+...+..++|+|+++|.++.+..+ ..||||.|++|++.|+.++...+..+.|+++
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~ 310 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRC 310 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEe
Confidence 999999999999999999999999988899999999999999999887 6899999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 278 PIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 278 ~i~~~~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
+|.+-|++.|+|+.|+|.||++++||.++++|.+..+.|.+|+.....++.+.||+.+-+.|+|+...+|..|.+||++.
T Consensus 311 pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~ 390 (501)
T KOG0459|consen 311 PVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPN 390 (501)
T ss_pred ehhhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 358 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
++..+.+.|.|+|.++ .+ ..|.+||.+++|+|+...+|.| .+++.+|++||...|.+|+|++.|+.+.++++...
T Consensus 391 n~~~s~~~F~aqi~Il---E~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~ 466 (501)
T KOG0459|consen 391 NPCKSGRTFDAQIVIL---EHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEG 466 (501)
T ss_pred CccccccEEEEEEEEE---ecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCC
Confidence 9999999999999994 45 6899999999999999999999 67889999999999999999999999999999999
Q ss_pred eEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011836 437 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~ 471 (476)
|||+++|.++|.+|||.||++|.|||+|+|+++.+
T Consensus 467 ~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 467 PICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred cEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999999999999999999999999999753
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-83 Score=638.47 Aligned_cols=429 Identities=37% Similarity=0.692 Sum_probs=409.4
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
+.+...+.+++.+++||+|+|||||.|+|||..|.++.+.|.++++++...|+.||.|+|++|.+.+||+||+|++....
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 117 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.|++..+.++|+|+|||.+|+++|++|+.+||+++|||||+.|.||+||+..+||+||+.+++.+|+.++||++||||+
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~- 327 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL- 327 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHH-HhcCCCccCCeeEEEeecccCccccccc-cCCCCCCCChhhHHHHHhhCCCCCCCCCCC
Q 011836 197 TVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRV-DKSLCPWWNGPCLFEALDRIEITPRDPNGP 274 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~iipiSa~~g~~i~~~~-~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~ 274 (476)
++|+++||+++++.+..+| +.+||. ..++.|+|||+++|+|+.... +..+..||+||+|++.|+.+..|.+..++|
T Consensus 328 -V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kP 405 (603)
T KOG0458|consen 328 -VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKP 405 (603)
T ss_pred -cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCC
Confidence 9999999999999999999 888998 467899999999999998863 346788999999999999998888889999
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeE
Q 011836 275 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 275 ~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 352 (476)
|++.|.++++ +.|..++|+|++|.|++||+|+++|+...+.|++|.+++++...|.|||.|.+.|.++..+.++.|++
T Consensus 406 l~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i 485 (603)
T KOG0458|consen 406 LRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDI 485 (603)
T ss_pred eEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhccccee
Confidence 9999999995 56778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011836 353 LS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 353 l~-~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
++ .+..+.+.+..|.+++.+|+. +.|+..|.+..+|+|+..++|++.++...+++.||+..++.|++|..|+.|.++
T Consensus 486 ~~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ve 563 (603)
T KOG0458|consen 486 ADSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVE 563 (603)
T ss_pred eecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeee
Confidence 99 777888888999999999764 478889999999999999999999999999999999999999999999999999
Q ss_pred EEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
++...|||+++|.+|+++|||++|..|+|||+|+|+++.
T Consensus 564 le~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 564 LETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred ccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999999999999999999999999999874
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.6e-79 Score=628.89 Aligned_cols=417 Identities=38% Similarity=0.706 Sum_probs=391.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+|+++||+++||+|||||||+++|++..|.++.+.++++++++.+.|+.++.++|++|..++|+++|+|++.....+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCC--CccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~--g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
++++++|+|||||.+|.+++..+++.+|++|+|||+.+ +. ..++++|+.++..+++++++|++||||+ .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~ 152 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--V 152 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--c
Confidence 99999999999999999999999999999999999998 54 2799999999999998779999999999 4
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
++++++++++.+++..+++.+++.. ..++++|+||++|.|+.++.+ .++||+|++|+++|+.++.|.+..++||+|+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~--~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~ 229 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSE--NMPWYNGPTLLEALDNLKPPEKPTDKPLRIP 229 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCcccccc--CCCcccHHHHHHHHhcCCCCccccCCCcEEE
Confidence 4667788889999999999888752 247899999999999999876 4899999999999999988888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
|+++| ++.|+|++|+|.+|+|++||+|+++|++..++|++|++++.+++.|.|||+|+++|++++..++++||+|+++
T Consensus 230 i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 230 IQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred EEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999 5889999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEc
Q 011836 357 AKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 435 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~ 435 (476)
++++..+++|+|++.|++ + .+++.||++.+|+++.+++|+|..|.+.+|+++++..+++|++|++|+.|.|+|+|.
T Consensus 310 ~~~~~~~~~f~a~v~~l~---~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~ 386 (425)
T PRK12317 310 DNPPTVAEEFTAQIVVLQ---HPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPT 386 (425)
T ss_pred CCCCCcccEEEEEEEEEC---CCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEEC
Confidence 888888999999999954 4 689999999999999999999999999999999998889999999999999999999
Q ss_pred ceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 436 NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 436 ~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
+|+|+++|++++.||||+||++|+|+|+|+|+++.+.
T Consensus 387 ~p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 387 KPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred CeeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 9999999999999999999999999999999998764
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.6e-78 Score=621.24 Aligned_cols=421 Identities=38% Similarity=0.693 Sum_probs=392.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++.+|.++.+.+.++++++...|+.++.|+|++|..++|+++|+|++.....+.+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++..++|+|||||.+|.+++..++..+|++|||||+.++.++ ...|+.+|+.++..++++++||++||+|+ .++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~ 156 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNY 156 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCc
Confidence 999999999999999999999999999999999999998542 23789999988888898779999999999 556
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 280 (476)
++++++++.+++..+++..++.. ..++++|+||++|.|+.++... +|||+|++|++.|+.+++|.+..++||+|+|+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~ 233 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQ 233 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCc-ccceEEEeeccccccccccccC--CccccchHHHHHHhcCCCCCCccCCCcEEEEE
Confidence 77889999999999999988752 3579999999999999987664 79999999999999998888888899999999
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 281 ~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
++| ++.|+|++|+|.+|.|++||.|+++|++..++|++|++++.++++|.|||+|+++|++++..++++||+|++++.
T Consensus 234 ~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 234 DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999 588999999999999999999999999999999999999999999999999999999999899999999999988
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011836 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
+++.+++|+|++.||+. ..++..||++++|+++.+++|+|..|.+.+|+++++..+++|++|++|+.+.|+|+|++|+
T Consensus 314 ~~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 391 (426)
T TIGR00483 314 PPKVAKEFTAQIVVLQH--PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM 391 (426)
T ss_pred CCceeeEEEEEEEEECC--CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCee
Confidence 88889999999999542 2689999999999999999999999999999999998899999999999999999999999
Q ss_pred EeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 439 ~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
|+++|++++.+|||+||++|+|||+|.|+++..+
T Consensus 392 ~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 392 VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999999988643
No 8
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=8.1e-75 Score=598.73 Aligned_cols=410 Identities=28% Similarity=0.443 Sum_probs=376.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCcc--chhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..++.++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ++.++|++|..++|++||+|++..+..|
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35778999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
++++++++|+|||||.+|.+++..++..+|++|||||+..|+. .||++|+.++..++++++||++||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999974 799999999999998889999999999 5
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
++++++++++.+++..+++.+++. ...+++|+||++|+|+..+.. .++||+|++|+++|+.++.+.+..+.|+||+
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 567788999999998888887742 257999999999999998765 4899999999999999988878888999999
Q ss_pred EEEEEcc--CCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 279 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 i~~~~~~--~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
|+++++. ....+.|+|.+|.|++||+|+++|++..++|++|++++.+++.|.|||+|+++|++ ..++++||||+++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9998742 12237899999999999999999999999999999999999999999999999985 4679999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+.++.++++|+|++.||+ ..+|..||++.+|+|+.+++|+|..|.+++|++||+. .+|.+|++|+.+.|+|++++
T Consensus 328 ~~~~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECC
Confidence 888888999999999954 4679999999999999999999999999999999874 46889999999999999999
Q ss_pred eEEeeeccCccccceEEEE--eCCcEEEEEEEEEcC
Q 011836 437 SICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 470 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr--~~~~tvg~G~V~~~~ 470 (476)
|+|+++|.+++.||||+|| +++.|||+|.|+++.
T Consensus 403 pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 403 PLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999994 679999999999876
No 9
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-76 Score=552.20 Aligned_cols=410 Identities=31% Similarity=0.504 Sum_probs=381.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcC--ccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g--~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..+..+++..+|++|.|||||+|+|||++..+.+.++...++.+...| ...+.++.++|..+.||++||||++++.+|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 456789999999999999999999999999999999998888775333 456889999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
.+++++|++.|||||+.|.++|..|++.||.+|++|||..|+. .||++|..++..+|++|++|++||||+ +
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--v 152 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--V 152 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--c
Confidence 9999999999999999999999999999999999999999986 699999999999999999999999999 9
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
+|++++|+++..+...+.+++|+. ...+||+||+.|+|+...++ .+|||+||+|++.|+.+........++||||
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfP 227 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFP 227 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeec
Confidence 999999999999999999999987 56999999999999998765 5999999999999999988777788899999
Q ss_pred EEEEEc-cC-CeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 279 IIDKFK-DM-GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 i~~~~~-~~-G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
|+.+.+ +. =+-+.|+|.+|++++||+|++.|+++..+|++|..+..++++|.+|+.|++.|. +..|++||++|+..
T Consensus 228 VQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~ 305 (431)
T COG2895 228 VQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAA 305 (431)
T ss_pred eEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEcc
Confidence 999984 22 233899999999999999999999999999999999999999999999999998 77899999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+.+|..+..|.|.+.| +...++.+|..+.+.+++..+.++|..|.+.+|.++..+. ..+.|..|+.+.|++.++.
T Consensus 306 ~~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~ 380 (431)
T COG2895 306 DAPPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDK 380 (431)
T ss_pred CCCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCC
Confidence 9999999999999999 4557899999999999999999999999999999988755 7788999999999999999
Q ss_pred eEEeeeccCccccceEEEEeC--CcEEEEEEEEEcCC
Q 011836 437 SICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELPT 471 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~~--~~tvg~G~V~~~~~ 471 (476)
|++++.|.+++.+|+|||.|. |.|+|+|+|.+-..
T Consensus 381 pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~ 417 (431)
T COG2895 381 PIAFDAYAENRATGSFILIDRLTNGTVGAGMILASLS 417 (431)
T ss_pred ceeecccccCcccccEEEEEcCCCCceeceeeechhh
Confidence 999999999999999999885 78999999997553
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=7.2e-75 Score=590.89 Aligned_cols=400 Identities=29% Similarity=0.496 Sum_probs=370.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCcc--chhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
++|+++||+|||||||+++||+.+|.++.+.+.++++++...|.+ +|.|+|++|..++|++||+|++.....++++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
+++|+|||||.+|.++|..++..+|++|||||+.+|+. +||++|+.++..++++++||++||||+ .+++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999974 799999999999999889999999999 556678
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 283 (476)
+++++.+++..+++.+++. +++++|+||++|.|+.++.+ .++||.|++|.++|+.++.|.+..++|+|++|++++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8899999999999888874 67899999999999998765 489999999999999998888888899999999987
Q ss_pred c--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcc
Q 011836 284 K--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 361 (476)
Q Consensus 284 ~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~ 361 (476)
+ ..+.-+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++ ..++++||+|+++++++.
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 4 223447899999999999999999999999999999999999999999999999984 467999999999998888
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~ 441 (476)
.+..|+|++.++ .+.+|+.||++.+|+|+.+++|+|..|...+|++||+. .++++|++|+.+.|+|++++|+|++
T Consensus 305 ~~~~f~a~i~~l---~~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~ 379 (406)
T TIGR02034 305 VADQFAATLVWM---AEEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFD 379 (406)
T ss_pred cceEEEEEEEEe---ChhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccC
Confidence 899999999994 45689999999999999999999999999999999874 4678899999999999999999999
Q ss_pred eccCccccceEEE--EeCCcEEEEEEE
Q 011836 442 KFADFAQLGRFTL--RTEGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfil--r~~~~tvg~G~V 466 (476)
+|++++.||||+| |++|+|||+|+|
T Consensus 380 ~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 380 PYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9999999999999 668999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.9e-71 Score=594.60 Aligned_cols=414 Identities=29% Similarity=0.460 Sum_probs=379.3
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhhcccEEEeee
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
.....++.++|+++||+|||||||+|+|++..|.++.+.+.++++++...|. .++.++|++|..++|+++|+|++.++
T Consensus 17 ~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~ 96 (632)
T PRK05506 17 AQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAY 96 (632)
T ss_pred hhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeee
Confidence 3346667789999999999999999999999999999999999999999997 78999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 116 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
..+++++.+++|+|||||.+|.++|..++..+|++|||||+..|.. +|+++|+.++..++++++||++||||+
T Consensus 97 ~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 97 RYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred eEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999864 799999999999998889999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~ 275 (476)
.+|++++++++..++..+++.++|. +++++|+||++|.|+.++.+ .++||.|++|.++|+.++.+.+..++|+
T Consensus 170 --~~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~l~~~~~~~~~~~~p~ 242 (632)
T PRK05506 170 --VDYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYEGPSLLEHLETVEIASDRNLKDF 242 (632)
T ss_pred --ccchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCcccHhHHHHHHhcCCCCCCcCCCCc
Confidence 5567788999999999999988884 57899999999999998765 3799999999999999988777788999
Q ss_pred eEEEEEEEcc--CCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 276 RMPIIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 276 ~~~i~~~~~~--~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
|++|.++++. .+..+.|+|.+|+|++||+|.++|++..++|+||++++.++++|.|||+|+++|++ ..++++|++|
T Consensus 243 r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL 320 (632)
T PRK05506 243 RFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDML 320 (632)
T ss_pred eeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEE
Confidence 9999998752 22337899999999999999999999999999999999999999999999999984 4679999999
Q ss_pred ecCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEE
Q 011836 354 SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 433 (476)
Q Consensus 354 ~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~ 433 (476)
++++++++.+..|+|++.||+ +.++..||++++|+|+.+++|+|..|.+++|+++++ +++|.+|++|+.+.|+|+
T Consensus 321 ~~~~~~~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~--~~~p~~l~~g~~~~v~l~ 395 (632)
T PRK05506 321 ARADNRPEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLE--RLAAKTLELNEIGRCNLS 395 (632)
T ss_pred ecCCCCCcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCc--cCCcceeCCCCEEEEEEE
Confidence 999988888999999999954 556779999999999999999999999999999887 378999999999999999
Q ss_pred EcceEEeeeccCccccceEEEEe--CCcEEEEEEEEEcCCC
Q 011836 434 VNNSICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTV 472 (476)
Q Consensus 434 ~~~pi~~~~~~~~~~lgrfilr~--~~~tvg~G~V~~~~~~ 472 (476)
+++|+|+++|++|+.||||+||+ +|+|||+|+|++..+.
T Consensus 396 ~~~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 396 TDAPIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred ECCEEeeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 99999999999999999999955 8999999999987764
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.2e-67 Score=539.51 Aligned_cols=389 Identities=28% Similarity=0.468 Sum_probs=340.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|+|||||+++|++..|.+..+...+ ...+|..++|+++|+|++.....|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 578899999999999999999999998888665432111 23689999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++++++|||||||.+|+++|+++++.+|+++|||||.+|+. +||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999964 799999999999999989999999999 43
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc---ccCCCCCCCC-hhhHHHHHhhC-CCCCCCCCCCc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 275 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~---~~~~~~~w~~-g~~L~~~l~~l-~~~~~~~~~~~ 275 (476)
.++.++.+.+++..+|+.+||+. .+++++|+|+++|.|+... ......+||+ +++|++.|+.+ +.|.++.++||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 35568888889999999999863 4789999999999877421 1112358997 57899888874 55777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
+|+|+++| ++.|+|++|+|.+|.|++||.|+++|.+ ..++|++|++++.+++.|.|||+|+++|++++..++++|+
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 5889999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEE
Q 011836 352 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 428 (476)
Q Consensus 352 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a 428 (476)
+|++++. +++++.|+|++.||+... +.+|..||++.+|+++.+++|+|..|....+ ++|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999874 556899999999966321 3589999999999999999999999865432 457889999999
Q ss_pred EEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 429 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 429 ~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
.|+|+|.+|+|++. ++||+||++|+|+|+|+|+++.
T Consensus 442 ~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 442 KMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 99999999999987 5899999999999999999876
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.3e-66 Score=527.37 Aligned_cols=391 Identities=30% Similarity=0.466 Sum_probs=340.8
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..+++++||+++||+|||||||+++|++..|.++.... .. ...+|..++|+++|+|++.....|+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~-~~~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KK-YDEIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cc-cccccCChhhhcCCEeEEccEEEEc
Confidence 45788999999999999999999999988877653321 11 1268999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+++++++|+|||||.+|++++++++..+|++++|||+..|.. .|+++|+.++..+++|++|+++||||+ .+
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~ 142 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VD 142 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CC
Confidence 999999999999999999999999999999999999999864 799999999999999988899999999 43
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccC---CCCCCCCh-hhHHHHHhh-CCCCCCCCCCC
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGP 274 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~---~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~ 274 (476)
.++.++.+.+++..+|+.++++. ..++++|+||++|+|+...... ...+||++ ++|++.|+. ++.|.++.+.|
T Consensus 143 -~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p 220 (409)
T CHL00071 143 -DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKP 220 (409)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCC
Confidence 24567888889999999998863 3589999999999988754322 12589985 899998887 56677778899
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
|+++|+++| ++.|+|++|+|.+|+|++||.|++.|. +..++|++|+++++++++|.|||+|+++|++++..++++|
T Consensus 221 ~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G 300 (409)
T CHL00071 221 FLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERG 300 (409)
T ss_pred EEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCe
Confidence 999999999 688999999999999999999998774 5779999999999999999999999999999988899999
Q ss_pred eEEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCE
Q 011836 351 FVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAI 427 (476)
Q Consensus 351 ~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~ 427 (476)
|+|++++. ++++++|+|++.+|+... ..+|..||++.+|+|+.+++|+|..|... + .++|++|++|+.
T Consensus 301 ~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~ 371 (409)
T CHL00071 301 MVLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDR 371 (409)
T ss_pred EEEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCE
Confidence 99999874 567899999999976421 25799999999999999999999988643 1 257889999999
Q ss_pred EEEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011836 428 VVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 428 a~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~ 471 (476)
+.|+|+|++|+|++++ |||+||+.|+|+|+|+|+++.+
T Consensus 372 a~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 372 IKMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 9999999999999985 7999999999999999998753
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.8e-66 Score=523.77 Aligned_cols=380 Identities=30% Similarity=0.433 Sum_probs=332.2
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
+++++++||+++||+|||||||+++|++..+ ..|+.++...+.+|..++|+++|+|++.....++
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 4567889999999999999999999986432 2344444444689999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+++.+++|+|||||.+|++++.+++..+|+++||||+.+|.. +|+++|+.++..+++|++||++||||+. +
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl~--~ 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDMV--D 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCCc--c
Confidence 999999999999999999999999999999999999999864 7999999999999999776789999993 3
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhh-CCCCCCCCCCCceE
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRM 277 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~ 277 (476)
.++.++.+.+++..+++.+++.. .+++++|+||++|.|... .++||.+ ++|++.|+. ++.|.+..++||++
T Consensus 143 -~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~ 215 (396)
T PRK12735 143 -DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLM 215 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEE
Confidence 34567778888999999988752 358999999999999643 3789965 889998886 56677788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
+|+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|+++++++++|.|||+|+++|+|++..++++|+||
T Consensus 216 ~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl 295 (396)
T PRK12735 216 PIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVL 295 (396)
T ss_pred EEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEE
Confidence 999999 688999999999999999999999987 4789999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEE
Q 011836 354 SSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 430 (476)
Q Consensus 354 ~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v 430 (476)
++++ ++++++.|+|++.+|+... +.+|..||++.+|+++.+++|+|.. .++|++|++|+.+.|
T Consensus 296 ~~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 361 (396)
T PRK12735 296 AKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKM 361 (396)
T ss_pred EcCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEE
Confidence 9987 4567899999999966321 2578999999999999999999852 235678999999999
Q ss_pred EEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 431 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 431 ~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
+|+|++|+|++++ |||+||++|+|+|+|+|+++.
T Consensus 362 ~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 362 TVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 9999999999985 799999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2e-65 Score=519.90 Aligned_cols=379 Identities=31% Similarity=0.453 Sum_probs=330.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
+.++++||+++||+|||||||+++|++... +.|+......+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 457889999999999999999999986431 12222222334799999999999999999999988
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++++++|+|||||.+|++++.+++..+|++++|||+..|.. +|+++|+.++..+++|.+||++||||+ .+
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~~~~~~g~p~iiVvvNK~D~--~~- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHHHHHHcCCCEEEEEEeecCC--cc-
Confidence 99999999999999999999999999999999999999864 799999999999999966679999999 33
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhh-CCCCCCCCCCCceEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 278 (476)
.++.++.+.+++..+++.+++. ..+++++|+||++|.+-. ..++||++ ++|+++|+. ++.|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~~-----~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGD-----DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCCC-----CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3456777888999999999885 246899999999998732 24789975 899999887 677777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||+|.+.|. +..++|+||++++.++++|.|||+|+++|++++..++++|++|+
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 99999 588999999999999999999999986 68899999999999999999999999999999989999999999
Q ss_pred cCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011836 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++. +++++.|+|++.+|+... +.++..||++.+|+++.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 9874 556799999999966311 368899999999999999999983 2 2357889999999999
Q ss_pred EEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
|+|++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.1e-65 Score=517.69 Aligned_cols=378 Identities=29% Similarity=0.455 Sum_probs=329.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...++++||+++||+|||||||+++|+...+ +.|+..+...+.+|..++|+++|+|++.....|+
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~ 71 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEec
Confidence 3478899999999999999999999974321 2344444445589999999999999999999998
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+++++++|+|||||.+|+++++++++.+|++++|||+.+|+. +|+++|+.++..+++|++||++||||+. +
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~~--~ 142 (394)
T PRK12736 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDLV--D 142 (394)
T ss_pred CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCCc--c
Confidence 899999999999999999999999999999999999999864 7999999999999999888999999983 2
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhh-CCCCCCCCCCCceE
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRM 277 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~ 277 (476)
+++.++.+.+++..+++.+++.. .+++++|+||++|.+. ..+||.+ ++|++.|+. ++.|.++.++||++
T Consensus 143 -~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~ 213 (394)
T PRK12736 143 -DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLM 213 (394)
T ss_pred -hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEE
Confidence 34566777889999999998852 3579999999998642 2479964 788887775 67777788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
+|+++| ++.|+|++|+|.+|+|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|++|
T Consensus 214 ~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl 293 (394)
T PRK12736 214 PVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVL 293 (394)
T ss_pred EEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEE
Confidence 999999 588999999999999999999999997 6789999999999999999999999999999998899999999
Q ss_pred ecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEE
Q 011836 354 SSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 430 (476)
Q Consensus 354 ~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v 430 (476)
++++. +.+++.|+|++.+|+... ..++..||++.+|+++.+++|+|.. .++|++|++|+.+.|
T Consensus 294 ~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 359 (394)
T PRK12736 294 AKPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTI 359 (394)
T ss_pred ecCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEE
Confidence 99874 456799999999965321 2578999999999999999999852 235678999999999
Q ss_pred EEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 431 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 431 ~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
+|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 360 ~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 360 TVELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 9999999999986 699999999999999999875
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.3e-64 Score=511.84 Aligned_cols=377 Identities=30% Similarity=0.465 Sum_probs=327.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 467889999999999999999999975321 23444444557899999999999999999999988
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++++++|+|||||++|.++++++++.+|+++||||+.+|+. +|+++|+.++..+++|++|+++||||+ .+
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~- 142 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CC-
Confidence 89999999999999999999999999999999999999864 799999999999999977789999999 43
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhhC-CCCCCCCCCCceEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDRI-EITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~l-~~~~~~~~~~~~~~ 278 (476)
.++.++.+.+++..+++.+++.. .+++++|+||++|.+. ..+||.+ ++|++.|+.+ +.|.++.++||+++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 143 DEELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 23456777788999999988752 3589999999998642 2469974 8888888764 66777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||+|++.|. +..++|++|++++.++++|.|||+|+++|++++..++++|++|+
T Consensus 215 V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 215 IEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 99999 588999999999999999999999984 57899999999999999999999999999999888999999999
Q ss_pred cCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011836 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++. +++++.|+|++.+|+... +.++..||++.+|+++.+++|+|.. .++|.+|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL-------------PEGVEMVMPGDNVKMT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 9864 556799999999965311 2578999999999999999999873 2357789999999999
Q ss_pred EEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999876
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=9.7e-64 Score=511.57 Aligned_cols=381 Identities=28% Similarity=0.437 Sum_probs=324.0
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhh-hcCCchhhhhcccEEEeeeEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY-IMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~-~~d~~~~e~~~g~ti~~~~~~ 117 (476)
....++++||+++||+|||||||+++|+... .+.|+.. ..+| .+|..++|+++|+|++.....
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~ 118 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVE 118 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEE
Confidence 3457889999999999999999999995221 1123221 1222 689999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
|++++++++|+|||||.+|+++|++++..+|+++||||+.+|+. +|+++|+.++..+++|++|+++||||+
T Consensus 119 ~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl-- 189 (447)
T PLN03127 119 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV-- 189 (447)
T ss_pred EcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc--
Confidence 99999999999999999999999999999999999999999864 799999999999999977889999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhh-CCCCCCCCCCCce
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFR 276 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~-l~~~~~~~~~~~~ 276 (476)
.+ .++.++.+.+++..+++.++|+ ..+++++|+|++++..-... ...|+.+++|++.|+. ++.|.+..++||+
T Consensus 190 v~-~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~----~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr 263 (447)
T PLN03127 190 VD-DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTND----EIGKNAILKLMDAVDEYIPEPVRVLDKPFL 263 (447)
T ss_pred CC-HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCc----ccccchHHHHHHHHHHhCCCCCcccccceE
Confidence 43 3445666777888888888875 24689999998754311111 1346677889988876 5777778889999
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC----CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~----~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
|+|+++| ++.|+|++|+|.+|.|++||.|++.|. +..++|++|+++++++++|.|||+|+++|++++..++++|
T Consensus 264 ~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG 343 (447)
T PLN03127 264 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRG 343 (447)
T ss_pred eeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCc
Confidence 9999999 588999999999999999999999865 4689999999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCE
Q 011836 351 FVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAI 427 (476)
Q Consensus 351 ~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~ 427 (476)
|||++++ ++.++++|+|++.+|+... +.+|..||++++|+++.+++|+|.. .++|++|++|+.
T Consensus 344 ~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~gd~ 409 (447)
T PLN03127 344 QVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPGDN 409 (447)
T ss_pred cEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCCCE
Confidence 9999985 5678999999999965321 3678999999999999999999852 245778999999
Q ss_pred EEEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 428 VVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 428 a~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
+.|+|+|.+|+|++.+ +||+||++|+|+|+|+|+++.
T Consensus 410 a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 410 VTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred EEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 9999999999999975 899999999999999999875
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-61 Score=444.99 Aligned_cols=380 Identities=30% Similarity=0.462 Sum_probs=325.2
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
...+.|++.||+.+||+|||||||..++..... ..|...+....-.|..++|++||+||+.+...
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahve 69 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeE
Confidence 346789999999999999999999999843211 11111111122357789999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
+++.++++..+|||||.||++||+.+++++|++||||+|.+|.+ +||++|+.+++..|+|+++|++||+|+
T Consensus 70 yet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm-- 140 (394)
T COG0050 70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM-- 140 (394)
T ss_pred EecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--
Confidence 99999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhh-CCCCCCCCCCCc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPF 275 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~ 275 (476)
++ +++..+.+..+++.+|..++|. ..+.|++.-||+....-. .+|... ..|+++++. +|.|.++.++||
T Consensus 141 vd-d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPf 211 (394)
T COG0050 141 VD-DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPF 211 (394)
T ss_pred cC-cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCcccccc
Confidence 54 5788999999999999999997 467899888886543322 224432 346676665 789999999999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
+++|.++| .++|+|++|||.+|+|++|+.+.+.... ++..|++++++++..+++.||++|++.|+|+...++.||+
T Consensus 212 lmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGq 291 (394)
T COG0050 212 LMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQ 291 (394)
T ss_pred cccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecce
Confidence 99999999 5899999999999999999999987654 5678999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEE
Q 011836 352 VLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 428 (476)
Q Consensus 352 vl~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a 428 (476)
+|+.|+ ...+.++|+|+++++.+- .|+++-.||.|.+|+++..+++.+.- .+...++.+|+.+
T Consensus 292 vLakpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l-------------~eg~emvmpgdnv 357 (394)
T COG0050 292 VLAKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITL-------------PEGVEMVMPGDNV 357 (394)
T ss_pred EeecCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEec-------------cCCcceecCCCce
Confidence 999988 366789999999997531 24788899999999999998885541 2345679999999
Q ss_pred EEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 429 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 429 ~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
.+.++|..||++|.+ -||.+|..|+|+|.|.|+++.
T Consensus 358 ~~~veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 358 KMVVELIHPIAMEEG------LRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred EEEEEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeec
Confidence 999999999999998 499999999999999999875
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-61 Score=451.07 Aligned_cols=381 Identities=31% Similarity=0.453 Sum_probs=327.9
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
-.++|++.||+.+||+|||||||..++.... .+.|...+....-.|.-++|+.|||||+.....+
T Consensus 48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkil---------------a~~g~A~~~kydeID~APEEkaRGITIn~aHveY 112 (449)
T KOG0460|consen 48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEY 112 (449)
T ss_pred cccCCCcccccccccccCCchhHHHHHHHHH---------------HhccccccccHhhhhcChhhhhccceEeeeeeee
Confidence 3578999999999999999999999884211 1122222333334688899999999999999999
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
++.++++.-+|||||.||+++|+.|+++.|++||||.|.+|.+ +||+||+.+++..|+++++|++||.|+ +
T Consensus 113 eTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~--V 183 (449)
T KOG0460|consen 113 ETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL--V 183 (449)
T ss_pred eccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--c
Confidence 9999999999999999999999999999999999999999986 899999999999999999999999999 4
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCC--hhhHHHHHhh-CCCCCCCCCCCc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN--GPCLFEALDR-IEITPRDPNGPF 275 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~--g~~L~~~l~~-l~~~~~~~~~~~ 275 (476)
+ +++.++-+.-+++++|..+||+ .++.|+|.-||+....-.++ .+.. -.-|++.++. +|.|.++.++||
T Consensus 184 ~-d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~p------eig~~aI~kLldavDsyip~P~R~~~~pF 255 (449)
T KOG0460|consen 184 D-DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQP------EIGLEAIEKLLDAVDSYIPTPERDLDKPF 255 (449)
T ss_pred C-CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCc------cccHHHHHHHHHHHhccCCCcccccCCCc
Confidence 3 4677888889999999999998 57899999988764321111 1111 1236777776 899999999999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
.++|.++| .|+|+|++|++++|.|++|+++.+...+ .+..|+.|++|++.+++|.|||.+++-|+|++..+++|||
T Consensus 256 l~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGm 335 (449)
T KOG0460|consen 256 LLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGM 335 (449)
T ss_pred eeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhccc
Confidence 99999999 6999999999999999999999988765 5678999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEE
Q 011836 352 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 428 (476)
Q Consensus 352 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a 428 (476)
+++.|+. ..+.+.|+|+++++..-. +.++..+|.+.+++.+-.++|++.... ..+++.+|+.+
T Consensus 336 vl~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~~ 401 (449)
T KOG0460|consen 336 VLAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGENV 401 (449)
T ss_pred EEecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCCe
Confidence 9999996 778999999999975322 378899999999999999999987421 13569999999
Q ss_pred EEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011836 429 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 429 ~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~ 471 (476)
.+++.|.+|+++++. .||.||+.|+|||.|.|+++++
T Consensus 402 ~~~~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 402 KVEVTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EEEEEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 999999999999997 5999999999999999999876
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.3e-56 Score=453.17 Aligned_cols=346 Identities=22% Similarity=0.384 Sum_probs=289.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|||||||+++|. |. -+|..++|.+||+|++.++..+.+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLt---g~-------------------------~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALS---GV-------------------------KTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHh---CC-------------------------CcccchhhHHhCCchhcccccccc
Confidence 45778999999999999999999994 21 135567889999999988875421
Q ss_pred ---------------C------------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCC
Q 011836 121 ---------------E------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 167 (476)
Q Consensus 121 ---------------~------------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~ 167 (476)
. .+.++|+|||||++|+++|+++++.+|+++|||||.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~------ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCP------ 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCcc------
Confidence 0 2479999999999999999999999999999999998621
Q ss_pred CCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCC
Q 011836 168 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 247 (476)
Q Consensus 168 ~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~ 247 (476)
++||++|+..+..++++++|||+||||+.. .+.+++..+++..+++.... .+.+++|+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~----~~~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVK----EAQAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccC----HHHHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 279999999999999998999999999943 33455556666666655432 367999999999999976
Q ss_pred CCCCCChhhHHHHHh-hCCCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEeeeecCCCEEEEecCC-----
Q 011836 248 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 311 (476)
Q Consensus 248 ~~~w~~g~~L~~~l~-~l~~~~~~~~~~~~~~i~~~~--~~--------~G~v~~G~v~sG~l~~g~~v~~~p~~----- 311 (476)
|.+.|. .++.|.++.+.|++++|+++| ++ +|+|++|+|.+|+|++||+|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 677777 678887888899999999887 22 69999999999999999999999975
Q ss_pred --------ceEEEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEcccc----
Q 011836 312 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 376 (476)
Q Consensus 312 --------~~~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---- 376 (476)
..++|+||++++.++++|.|||+|+++|. +++..++.|||||++++.+++.++.|+|++.|++..
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 36799999999999999999999999988 788889999999999987777888999999996542
Q ss_pred -------c-cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccc
Q 011836 377 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQ 448 (476)
Q Consensus 377 -------~-~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~ 448 (476)
. ..+++.||++.+|+++.++.|+|..|. . .. .++|+|++|+|+..+
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~---------------~~--~~~l~l~~P~~~~~g----- 428 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D---------------DG--IAKLELTTPVCTSVG----- 428 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C---------------Ce--EEEEEECccEeccCC-----
Confidence 0 157999999999999999999999752 1 01 678999999999887
Q ss_pred cceEEEEeC----CcEEEEEEEEE
Q 011836 449 LGRFTLRTE----GKTVAVGKVTE 468 (476)
Q Consensus 449 lgrfilr~~----~~tvg~G~V~~ 468 (476)
.||+||+. .+|+|+|.|..
T Consensus 429 -dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 429 -EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -CEEEEEeccCCCcEEEEEEEEcC
Confidence 49999963 37999999974
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2.3e-53 Score=449.89 Aligned_cols=337 Identities=26% Similarity=0.389 Sum_probs=291.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CCeEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 125 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 125 (476)
.|+++||+|||||||+++|. |. -+|..++|+++|+|++.++..+.. ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~-------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV-------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC-------------------------CCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 68999999999999999993 21 145667889999999999888766 45789
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
+|||||||++|+++|+.++..+|++++|||+++|++ +||++|+.++..+++|++|||+||+|+ + +++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDl--v--~~~~~ 122 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADR--V--DEARI 122 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCcc--C--CHHHH
Confidence 999999999999999999999999999999999974 799999999999999988899999999 3 35667
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE--
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~-- 283 (476)
+++.+++..+++..++. +.+++|+||++|.|+++ |.+.|..++.+....+.|+|++|+++|
T Consensus 123 ~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 78888888888887764 56899999999999987 667777776666667899999999999
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEecc-CCccccceeeEEecCCCCccc
Q 011836 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVAA 362 (476)
Q Consensus 284 ~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~-~~~~~i~~G~vl~~~~~~~~~ 362 (476)
++.|+|++|+|.+|+|++||+|.+.|.+..++|++|++++.++++|.||++|+++|+| ++..++++||+|++++ ++.+
T Consensus 186 ~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~~ 264 (614)
T PRK10512 186 KGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPEP 264 (614)
T ss_pred CCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCcc
Confidence 6899999999999999999999999999999999999999999999999999999997 8888999999999874 4555
Q ss_pred ccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeee
Q 011836 363 VTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEK 442 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~ 442 (476)
+..+.+.+.. ..+++.|+.+.+|+|+.++.|+|..+ +.+.+++.|++|+++..
T Consensus 265 ~~~~~~~l~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~ 317 (614)
T PRK10512 265 FTRVIVELQT-----HTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLAD 317 (614)
T ss_pred ceeEEEEEcC-----CccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccC
Confidence 5665443321 25788999999999999999999965 12579999999999888
Q ss_pred ccCccccceEEEEe--CCcEEEEEEEEEcCCCC
Q 011836 443 FADFAQLGRFTLRT--EGKTVAVGKVTELPTVS 473 (476)
Q Consensus 443 ~~~~~~lgrfilr~--~~~tvg~G~V~~~~~~~ 473 (476)
+ .||+||+ ..+|+|+|.|+++.++.
T Consensus 318 g------dr~ilr~~s~~~tigGg~Vld~~~~~ 344 (614)
T PRK10512 318 N------DRLVLRDISARNTLAGARVVMLNPPR 344 (614)
T ss_pred C------CEEEEEeCCCCEEEEEEEEcccCCcc
Confidence 6 5999999 46999999999977654
No 23
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=7.4e-52 Score=421.81 Aligned_cols=345 Identities=25% Similarity=0.422 Sum_probs=284.2
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
++.++.+||+++||+|||||||+++|. + ..+|..++|++||+|++.++..+.
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------------------~~~d~~~~E~~rg~Ti~~~~~~~~ 55 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALT---G-------------------------VWTDRHSEELKRGITIRLGYADAT 55 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhh---C-------------------------eecccCHhHHhcCcEEEecccccc
Confidence 356788999999999999999999982 1 126778899999999998765433
Q ss_pred e--------------C------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH
Q 011836 120 T--------------E------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE 173 (476)
Q Consensus 120 ~--------------~------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e 173 (476)
+ . .+.++|+|||||.+|..+++.++..+|++++|+|+.++.. ..++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~ 129 (411)
T PRK04000 56 IRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKE 129 (411)
T ss_pred cccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHH
Confidence 2 1 3689999999999999999999999999999999998752 268999
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCC
Q 011836 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 253 (476)
Q Consensus 174 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~ 253 (476)
++..+..++++++++|+||+|+... +...+..+++..+++.... .+++++|+||++|.|+.+
T Consensus 130 ~l~~l~~~~i~~iiVVlNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gI~~----------- 191 (411)
T PRK04000 130 HLMALDIIGIKNIVIVQNKIDLVSK----ERALENYEQIKEFVKGTVA---ENAPIIPVSALHKVNIDA----------- 191 (411)
T ss_pred HHHHHHHcCCCcEEEEEEeeccccc----hhHHHHHHHHHHHhccccC---CCCeEEEEECCCCcCHHH-----------
Confidence 9999988998778999999999432 2222334455555543321 256899999999999987
Q ss_pred hhhHHHHHhh-CCCCCCCCCCCceEEEEEEEc--c--------CCeEEEEEEEeeeecCCCEEEEecCCc----------
Q 011836 254 GPCLFEALDR-IEITPRDPNGPFRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA---------- 312 (476)
Q Consensus 254 g~~L~~~l~~-l~~~~~~~~~~~~~~i~~~~~--~--------~G~v~~G~v~sG~l~~g~~v~~~p~~~---------- 312 (476)
|.+.|.. ++.|.+..++|++++|+++|. + +|+|++|+|.+|+|++||.|.++|++.
T Consensus 192 ---L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~ 268 (411)
T PRK04000 192 ---LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWE 268 (411)
T ss_pred ---HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccc
Confidence 5555554 677777778999999999982 2 577999999999999999999999863
Q ss_pred --eEEEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEcccc-------cccc
Q 011836 313 --QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAI 380 (476)
Q Consensus 313 --~~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~ 380 (476)
.++|+||++++.++++|.|||+|+++|+ +++..++++|+||++++.+++.+..|+|++.+++.. ...+
T Consensus 269 ~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~ 348 (411)
T PRK04000 269 PITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEP 348 (411)
T ss_pred cceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCC
Confidence 5799999999999999999999999996 677788999999999998888899999999996531 0257
Q ss_pred ccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccceEEE--EeCC
Q 011836 381 FTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG 458 (476)
Q Consensus 381 i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lgrfil--r~~~ 458 (476)
|..||++.+|+++.+++|+|..|. ++ .++++|.+|+++... .||+| |.++
T Consensus 349 i~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g------~r~~~~~~~~~ 400 (411)
T PRK04000 349 IKTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEG------DRVAISRRVGG 400 (411)
T ss_pred CCCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCC------CEEEEEEecCC
Confidence 999999999999999999999762 12 577889999999887 59999 5667
Q ss_pred --cEEEEEEEE
Q 011836 459 --KTVAVGKVT 467 (476)
Q Consensus 459 --~tvg~G~V~ 467 (476)
|++|.|.|.
T Consensus 401 ~~~~~~~~~~~ 411 (411)
T PRK04000 401 RWRLIGYGIIK 411 (411)
T ss_pred cEEEEEEEEeC
Confidence 899999873
No 24
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-52 Score=397.50 Aligned_cols=365 Identities=29% Similarity=0.443 Sum_probs=307.0
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
...+....+++|++.||+|||||||++.| .+|..+++. |.+ -..+|..++|-++|.|.+.++.
T Consensus 109 r~~~~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~-----------G~t----R~~ldv~kHEverGlsa~iS~~ 171 (527)
T COG5258 109 RKTEEAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGD-----------GAT----RSYLDVQKHEVERGLSADISLR 171 (527)
T ss_pred ecccCCCceEEEEEeccccCCcceEEEEE--EecCCCCCC-----------cch----hhhhhhhhHHHhhccccceeEE
Confidence 33445667899999999999999999999 688887742 110 1123444556666666665554
Q ss_pred EEE-----------------------eCCeEEEEEeCCCCcChHHHHHHhh--hhcCEEEEEEECCCCccccccCCCCch
Q 011836 117 HFE-----------------------TETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 117 ~~~-----------------------~~~~~~~liDtPGh~~~~~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt 171 (476)
-+- ..++.+.|+||-||+.|++++++|+ +..|+.+|+|.|++|++ ..|
T Consensus 172 v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~t 244 (527)
T COG5258 172 VYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMT 244 (527)
T ss_pred EEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhh
Confidence 332 2357789999999999999999998 48999999999999985 799
Q ss_pred HHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc-------------------cCCeeEEEe
Q 011836 172 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPI 232 (476)
Q Consensus 172 ~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-------------------~~~~~iipi 232 (476)
+||+.++.++++| +||++||+|+ . +.++++.+.+++...|+..+--+ ..-+|++.+
T Consensus 245 kEHLgi~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~t 319 (527)
T COG5258 245 KEHLGIALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYT 319 (527)
T ss_pred hHhhhhhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEE
Confidence 9999999999999 8999999999 3 46789999999999998765211 124689999
Q ss_pred ecccCccccccccCCCCCCCChhhHHHHHhhCCCCC-CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEec
Q 011836 233 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP-RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP 309 (476)
Q Consensus 233 Sa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~-~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p 309 (476)
|+.+|+|++- |.+++..+|... .+...||+|+|++.| .+.|+|+.|.|.+|.|+.||+++++|
T Consensus 320 SsVTg~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP 385 (527)
T COG5258 320 SSVTGEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGP 385 (527)
T ss_pred ecccCccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEcc
Confidence 9999999985 666777777653 356789999999998 68999999999999999999999999
Q ss_pred CC----ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCC
Q 011836 310 NK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAG 384 (476)
Q Consensus 310 ~~----~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G 384 (476)
.. ..++|+||++|+-++++|.||.+++++|+|++.+.+++||||+.+ .+|.++++|+|++++ +.| +.|+.|
T Consensus 386 ~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aG 461 (527)
T COG5258 386 FKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAG 461 (527)
T ss_pred CCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecC
Confidence 65 678999999999999999999999999999999999999999998 679999999999999 667 789999
Q ss_pred cEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeeeccCccccceEEEEeCCcEEEE
Q 011836 385 YKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAV 463 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~~~~~~~~~lgrfilr~~~~tvg~ 463 (476)
|.+++|+.+.++++++..|. + .+|++||...++++|. +|..++.+ .+|++ ++|++.|+
T Consensus 462 ye~v~H~etI~e~~~f~~id----~----------~~L~~GD~g~vr~~fkyrP~~v~eG------Q~fvF-ReGrskgv 520 (527)
T COG5258 462 YEPVFHYETIREAVYFEEID----K----------GFLMPGDRGVVRMRFKYRPHHVEEG------QKFVF-REGRSKGV 520 (527)
T ss_pred ceeeeEeeEeeheeEEEEcc----c----------ccccCCCcceEEEEEEeCchhhccC------cEEEE-ecCCCccc
Confidence 99999999999999999653 2 3599999999999997 99998884 26665 47999999
Q ss_pred EEEEEc
Q 011836 464 GKVTEL 469 (476)
Q Consensus 464 G~V~~~ 469 (476)
|.|+.+
T Consensus 521 G~v~~~ 526 (527)
T COG5258 521 GRVIRV 526 (527)
T ss_pred eEEecc
Confidence 999976
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.1e-51 Score=420.90 Aligned_cols=341 Identities=25% Similarity=0.413 Sum_probs=281.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE---
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--- 119 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--- 119 (476)
++.+||+++||+|||||||+++|. + ..+|..++|++||+|++.++..+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~-------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---G-------------------------VWTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---C-------------------------eecccCHhHHHcCceeEeccccccccc
Confidence 567999999999999999999983 1 125677889999999998865543
Q ss_pred -----------e------------CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH
Q 011836 120 -----------T------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 120 -----------~------------~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~ 176 (476)
+ ..+.++|+|||||.+|.++++.+++.+|++|||||+.++.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 1 14689999999999999999999999999999999998851 279999999
Q ss_pred HHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhh
Q 011836 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 256 (476)
Q Consensus 177 ~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~ 256 (476)
.+..+++++++|++||+|+...+ ...+..+++..+++.... ..++++|+||++|+|+.+
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSKE----KALENYEEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCHH----HHHHHHHHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 99999998899999999994322 222333445555554321 256899999999999987
Q ss_pred HHHHHhh-CCCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEeeeecCCCEEEEecCC------------ce
Q 011836 257 LFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 313 (476)
Q Consensus 257 L~~~l~~-l~~~~~~~~~~~~~~i~~~~--~~--------~G~v~~G~v~sG~l~~g~~v~~~p~~------------~~ 313 (476)
|.+.|.. ++.|.++.++|++|+|+++| ++ +|+|++|+|.+|+|++||+|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 5666665 67777778899999999988 22 57799999999999999999999985 24
Q ss_pred EEEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEcccc-------ccccccC
Q 011836 314 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 383 (476)
Q Consensus 314 ~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~ 383 (476)
++|+||++++.++++|.||++|+++|+ +++..++++||+|++++.+|+.+..|+|++.|+... ...+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788889999999999987788889999999996532 1268999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccceEEE--EeCC--c
Q 011836 384 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG--K 459 (476)
Q Consensus 384 G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lgrfil--r~~~--~ 459 (476)
||++.+|+++.+++|+|..+. ++ .++++|.+|+|+..+ .||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~--------------------~~--~~~l~l~~p~~~~~g------~r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSAR--------------------KD--EIEVKLKRPVCAEEG------DRVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcC--------------------Cc--EEEEEECCcEEcCCC------CEEEEEEecCCceE
Confidence 999999999999999999752 01 377889999999887 49999 3455 8
Q ss_pred EEEEEEE
Q 011836 460 TVAVGKV 466 (476)
Q Consensus 460 tvg~G~V 466 (476)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=8.9e-50 Score=421.56 Aligned_cols=335 Identities=27% Similarity=0.391 Sum_probs=283.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++||+|||||||+++|.. . -+|..++|+.+|+|++..+..+++++..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg---~-------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTG---I-------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhC---c-------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 4799999999999999999942 1 13455778899999999999999999999
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
+|||||||++|.++|+.++..+|++++|||+++|.+ +|+.+|+..+..+++|++|||+||||+ .+ ++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dl--v~--~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADR--VN--EEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCC--CC--HHHH
Confidence 999999999999999999999999999999999864 799999999999999989999999999 32 4566
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE--
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~-- 283 (476)
+.+.+++..+++..++. .+++++|+||++|.|+.++.+. |.+.++.++.+ ..+.|++++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 67777888888877653 2578999999999999986442 44555555433 25789999999999
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcccc
Q 011836 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 363 (476)
Q Consensus 284 ~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 363 (476)
++.|+|++|+|.+|++++||+|.++|++..++|++|+.+++++++|.||++|+++|+|++..++++|++++.+..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888766432 2
Q ss_pred cEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeec
Q 011836 364 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 443 (476)
Q Consensus 364 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~ 443 (476)
..+...+.. ..++..|+.+.+|+++.++.|++..+. . ..+++++++|+++..+
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l~----~------------------~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLLD----K------------------GIALLTLDAPLILAKG 317 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEcc----C------------------cEEEEEECCceecCCC
Confidence 233333322 246889999999999999999988542 1 1678889999998887
Q ss_pred cCccccceEEEEeC-CcEEEEEEEEEc
Q 011836 444 ADFAQLGRFTLRTE-GKTVAVGKVTEL 469 (476)
Q Consensus 444 ~~~~~lgrfilr~~-~~tvg~G~V~~~ 469 (476)
.||++|++ .+|+|+|.|+++
T Consensus 318 ------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 318 ------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------CEEEEEeCCCEEEeeeEEecC
Confidence 49999995 599999999987
No 27
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-48 Score=381.02 Aligned_cols=296 Identities=29% Similarity=0.436 Sum_probs=259.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
.|+..||+++|||||+.+|. | ..+|..++|.+||+|++.+++++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~alt---g-------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G-------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c-------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 68999999999999999883 2 2356679999999999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|||+|||++|+++|+.++...|+++||||+++|+. .||.||+..+..+|+++.+||+||+|+ ++ +++.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~--~d--~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADR--VD--EARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEecccc--cc--HHHHH
Confidence 99999999999999999999999999999999975 899999999999999999999999999 43 34555
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCC-CCCCCCCCCceEEEEEEE--
Q 011836 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 207 ~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~-~~~~~~~~~~~~~i~~~~-- 283 (476)
+..+++...+. +. +.+++++|+++|+|++++ .+.|..+. .+.++.+.|||++|+++|
T Consensus 123 ~~i~~Il~~l~---l~---~~~i~~~s~~~g~GI~~L--------------k~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---LA---NAKIFKTSAKTGRGIEEL--------------KNELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---cc---cccccccccccCCCHHHH--------------HHHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55555444443 43 678999999999999984 44444444 467788999999999999
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcccc
Q 011836 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 363 (476)
Q Consensus 284 ~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 363 (476)
+|.|+|++|+++||++++||++++.|.++.++|+|||.++.++++|.||++|+++|+|++.+++.||++|++++. ..++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~-~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP-LEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCC-CCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999874 4678
Q ss_pred cEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEE
Q 011836 364 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 403 (476)
Q Consensus 364 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i 403 (476)
+.|.+.+.+... ...++..|...++|.+..+++|++..+
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l 300 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPL 300 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeec
Confidence 899998887432 236789999999999999999998864
No 28
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=2.1e-49 Score=374.43 Aligned_cols=380 Identities=25% Similarity=0.357 Sum_probs=310.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchH-----HHHHHHHHHhhcCccchhhhhhcCCchhhhh------cccEE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR-----TIQKYEKEAKDKSRESWYMAYIMDTNEEERI------KGKTV 111 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~------~g~ti 111 (476)
--..+|+++|.+|+|||||++.| ..|.++++ +--..+++..++||+|+....++.++.+... +|...
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ceeEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 34579999999999999999998 56666663 2222355667899999999999988765431 22222
Q ss_pred EeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 112 EVGRAHFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 112 ~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
+.... .+...+.++|||.+||++|+++++.|+. .+|+.+|+|-|+.|+. +.|+||+.++.++.+| ++||
T Consensus 209 dWvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-VfvV 279 (641)
T KOG0463|consen 209 DWVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VFVV 279 (641)
T ss_pred cceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EEEE
Confidence 21111 2234578999999999999999999985 7999999999999985 8999999999999999 8899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCC--------------------ccCCeeEEEeecccCccccccccCCCC
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLC 249 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~g~~i~~~~~~~~~ 249 (476)
++|+|.+.++ .+++..+.+..++++.|+. ...-+|++.+|..+|.|+.-
T Consensus 280 VTKIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L------- 348 (641)
T KOG0463|consen 280 VTKIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL------- 348 (641)
T ss_pred EEeeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-------
Confidence 9999997664 5666777777788876653 12345788888888888764
Q ss_pred CCCChhhHHHHHhhCCCC-CCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----ceEEEEEEEEC
Q 011836 250 PWWNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCD 322 (476)
Q Consensus 250 ~w~~g~~L~~~l~~l~~~-~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~----~~~~V~si~~~ 322 (476)
|..+|+.++.. ....+.|..|.|+|+| ++.|+|+.|++.+|+|+.+|.+.++|.. .+..|+||++.
T Consensus 349 -------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRK 421 (641)
T KOG0463|consen 349 -------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRK 421 (641)
T ss_pred -------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhc
Confidence 34456655432 2345678999999998 7999999999999999999999999964 57899999999
Q ss_pred CeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEE
Q 011836 323 DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIV 401 (476)
Q Consensus 323 ~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~ 401 (476)
+-+|..+.|||...++|+.++..++++|||+++++..|+++|+|+|+|.+ ++| +.|.+.|+.++||++.+++|+|.
T Consensus 422 RMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAtiv 498 (641)
T KOG0463|consen 422 RMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTATIV 498 (641)
T ss_pred cccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceeeee
Confidence 99999999999999999999999999999999999999999999999999 777 78999999999999999999998
Q ss_pred EEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 011836 402 ELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 475 (476)
Q Consensus 402 ~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~~~~ 475 (476)
++. + .+|+.|+.+.|.|+|- +|-++.. |.-.++++|||.|+|.|+++.+..++
T Consensus 499 sM~----k----------dcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 499 SMG----K----------DCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred ecC----h----------hhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 753 1 3589999999999984 5655554 55566678999999999999887654
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-44 Score=338.59 Aligned_cols=374 Identities=24% Similarity=0.353 Sum_probs=308.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchH------HHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
--.++++++|..|+|||||++.| ..|.++++ +++++.|+. ..||+|+....++.++..+ -.++.+..
T Consensus 165 fievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~HEi-qsGrTSsis~evlGFd~~g----~vVNY~~~ 237 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPHEI-QSGRTSSISNEVLGFDNRG----KVVNYAQN 237 (591)
T ss_pred ceEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchhhh-ccCcccccchhcccccccc----cccchhhc
Confidence 34589999999999999999998 56777764 466655554 7899999999998887543 33332221
Q ss_pred -----EEEeCCeEEEEEeCCCCcChHHHHHHhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 117 -----HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 117 -----~~~~~~~~~~liDtPGh~~~~~~~~~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
-.+...+.++|||.+||.+|.++++.++. .+|+|+|||+|+.|+. ..|+||+.++.++++| ++|+
T Consensus 238 ~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvl 309 (591)
T KOG1143|consen 238 MTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVL 309 (591)
T ss_pred ccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEE
Confidence 12345678999999999999999999987 6999999999999975 6899999999999999 9999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc--------------------cCCeeEEEeecccCccccccccCCCC
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV--------------------KKDVQFLPISGLMGLNMKTRVDKSLC 249 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--------------------~~~~~iipiSa~~g~~i~~~~~~~~~ 249 (476)
++|||+ . +..-++...+++..++++.|+.. ...+|++.+|..+|+|+.-
T Consensus 310 vtK~Dl--~--~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l------- 378 (591)
T KOG1143|consen 310 VTKMDL--V--DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL------- 378 (591)
T ss_pred EEeecc--c--cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-------
Confidence 999999 3 24456788888999998888631 2346899999999999875
Q ss_pred CCCChhhHHHHHhhCCCCCC------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----ceEEEE
Q 011836 250 PWWNGPCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVL 317 (476)
Q Consensus 250 ~w~~g~~L~~~l~~l~~~~~------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~----~~~~V~ 317 (476)
|..+|+.+++... ....|..|.|++.| +..|.|+.|.+.+|.++.|+.+.++|.+ .+.+|-
T Consensus 379 -------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~ 451 (591)
T KOG1143|consen 379 -------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVG 451 (591)
T ss_pred -------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEee
Confidence 3445555544322 23567889999998 6899999999999999999999999975 578999
Q ss_pred EEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEE
Q 011836 318 AIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVE 396 (476)
Q Consensus 318 si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~ 396 (476)
||++++.++..+.|||...+.|..-+..-+++|||+..++..|+.+..|+|++.+ +.| +.|..||+..+|+|++++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrq 528 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQ 528 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceee
Confidence 9999999999999999999999866667799999999999889999999999999 666 889999999999999999
Q ss_pred EEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 397 ECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 397 ~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
+|.|..|.. ...|+.|+.|.|.|.|. +|-++.. |.-||+++|.|.|+|.|+++.+-
T Consensus 529 TAvi~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir~-------G~~ilfReG~tKGiG~Vt~Vfp~ 585 (591)
T KOG1143|consen 529 TAVITHIDD-------------ADCLRTGKWAVVKFCFAYHPEYIRE-------GSPILFREGKTKGIGEVTKVFPC 585 (591)
T ss_pred eeeeeeecc-------------cccccCCceEEEEEEecCCchhccC-------CCeeeeecccccccceEEEEEec
Confidence 999997642 23489999999999984 5554444 66677789999999999998653
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-42 Score=318.05 Aligned_cols=343 Identities=26% Similarity=0.399 Sum_probs=285.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 120 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 120 (476)
++..||+++||+|||||||+.+| +|. .+|...+|-+||+||.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sGv-------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SGV-------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hce-------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 67799999999999999999998 343 356668889999999998764211
Q ss_pred ------------------C------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH
Q 011836 121 ------------------E------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 121 ------------------~------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~ 176 (476)
. -+.+.|+|+|||+-.+.+|++|++..|+|+|||+|++... ++||+||+.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcP------QPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCC------CCchHHHHH
Confidence 0 2678999999999999999999999999999999999763 699999999
Q ss_pred HHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhh
Q 011836 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 256 (476)
Q Consensus 177 ~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~ 256 (476)
.+..+|++++|++-||+|+ + ++++..+..+++++|++-.- .++.|++|+||..+.|++.
T Consensus 134 AleIigik~iiIvQNKIDl--V--~~E~AlE~y~qIk~FvkGt~---Ae~aPIIPiSA~~~~NIDa-------------- 192 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDL--V--SRERALENYEQIKEFVKGTV---AENAPIIPISAQHKANIDA-------------- 192 (415)
T ss_pred HHhhhccceEEEEecccce--e--cHHHHHHHHHHHHHHhcccc---cCCCceeeehhhhccCHHH--------------
Confidence 9999999999999999999 4 46666677778888887543 2478999999999999998
Q ss_pred HHHHH-hhCCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCC------------ce
Q 011836 257 LFEAL-DRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQ 313 (476)
Q Consensus 257 L~~~l-~~l~~~~~~~~~~~~~~i~~~~~----------~~G~v~~G~v~sG~l~~g~~v~~~p~~------------~~ 313 (476)
|.+++ +.+|.|.++.++|.+|+|.++|. -.|-|+.|.+.+|.|++||++.+.|+- ..
T Consensus 193 l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 193 LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 55544 56899999999999999999993 268899999999999999999999973 24
Q ss_pred EEEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEccccc------c-ccccC
Q 011836 314 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 383 (476)
Q Consensus 314 ~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~------~-~~i~~ 383 (476)
.+|.||+.....+++|.||..+++... .+.+.|-..|.|+..++..|+..+.|+.+...|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 679999999999999999999998554 3455677889999999999999999999999865211 2 58999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccceEEEEe--C--Cc
Q 011836 384 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT--E--GK 459 (476)
Q Consensus 384 G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lgrfilr~--~--~~ 459 (476)
|-..++.+++..+-+.|.+... -.+++.|.+|+|.+.++ |..+-+ . =|
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k~----------------------d~~ev~Lk~Pvcae~g~------rvaisRri~~rWR 404 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAKK----------------------DEIEVKLKRPVCAEIGE------RVAISRRIGNRWR 404 (415)
T ss_pred CCeEEEEeecceeEEEEEEecC----------------------ceEEEEeccceecCCCC------EEEEEeeecceEE
Confidence 9999999999999888886421 15778899999988864 555522 1 28
Q ss_pred EEEEEEEEE
Q 011836 460 TVAVGKVTE 468 (476)
Q Consensus 460 tvg~G~V~~ 468 (476)
.+|+|.|..
T Consensus 405 LIG~G~ik~ 413 (415)
T COG5257 405 LIGYGTIKE 413 (415)
T ss_pred EEeEEEEec
Confidence 899999875
No 31
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-45 Score=352.86 Aligned_cols=371 Identities=37% Similarity=0.642 Sum_probs=334.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+.++||+++||+++||||+.+ +.+|.++.+.+.++++++.+.|+.+|.|+|++|....|+++|++++.....+++
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t 79 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 79 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc
Confidence 46778999999999999999998 678999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
..+.++++|.|||.+|.++|+.+.+++|.++++|.+..|.||++....+|+++|+.++..+|+.++++.+||||.....|
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999987778
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEE
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 280 (476)
++.+++++.+..+...++.++++. .. ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~----------------------------------~~------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPA----------------------------------AV------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCCh----------------------------------hh------------------hc
Confidence 888888887766665555554310 00 12
Q ss_pred EEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCC-
Q 011836 281 DKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 357 (476)
Q Consensus 281 ~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~- 357 (476)
++++ +.| +..|.++.++.+...|.....++++..+++....++.+|+.++++..|+...++++|.++.+..
T Consensus 188 ~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 2221 122 7888999999999999888899999999988888999999999999999999999999999987
Q ss_pred CCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 358 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
.|+.....|.|++++ +.| ..+..||.|.+.||+.+.+|++..|..++|..+|+.....|+++++++.+.+...|.+
T Consensus 262 ~p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~k 338 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGK 338 (391)
T ss_pred CCccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCC
Confidence 556678889999999 566 7899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 011836 437 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 475 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~~~~ 475 (476)
|+|+|.+++++.||||.+|+...|+|.|.|..+.....+
T Consensus 339 p~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~~ 377 (391)
T KOG0052|consen 339 PLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDAG 377 (391)
T ss_pred ccccccccccccccchhhhhhhccccccceeeeeecccc
Confidence 999999999999999999999999999999998876553
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=9.5e-41 Score=352.04 Aligned_cols=280 Identities=24% Similarity=0.351 Sum_probs=232.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.+||+|+||+|||||||+++|++.+|.+...+. . -.++||+.++|++||+|+......+.|.+++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~------------v---~~~~~D~~~~ErerGiTI~~~~~~v~~~~~k 65 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEA------------V---AERVMDSNDLERERGITILAKNTAIRYNGTK 65 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccc------------c---eeecccCchHHHhCCccEEeeeEEEEECCEE
Confidence 479999999999999999999999998865421 0 1368999999999999999999999999999
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
++|||||||.+|...+.++++.+|++||||||.+|++ .||++++..+..+++| +|||+||||++.+ +
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-----~ 132 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPSA-----R 132 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCc-----C
Confidence 9999999999999999999999999999999999874 7999999999999999 7899999999543 3
Q ss_pred HHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE
Q 011836 205 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 283 (476)
++++.+++..++..++... ...++++++||++|.+...+.. ..+.-.+.|..+++.+|.|..+.+.||++.|.+++
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 4566677777777666531 1246899999999987654311 11111223445677788887778899999999987
Q ss_pred --ccCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 284 --KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 284 --~~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
+..|++++|||.+|+|++||.|++.|.+ ...+|++|+.+ +.++++|.|||+|++ .++ .++.+||+|+
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~gl--~~i~~Gdtl~ 285 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AGL--EDINIGETIA 285 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eCC--cccCCCCEEe
Confidence 5789999999999999999999999874 25789999875 689999999999986 466 4689999999
Q ss_pred cCCCC
Q 011836 355 SVAKP 359 (476)
Q Consensus 355 ~~~~~ 359 (476)
+++++
T Consensus 286 ~~~~~ 290 (594)
T TIGR01394 286 DPEVP 290 (594)
T ss_pred CCCcc
Confidence 88743
No 33
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-39 Score=303.74 Aligned_cols=346 Identities=24% Similarity=0.353 Sum_probs=275.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe----
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---- 120 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---- 120 (476)
.+|++++||+|||||||..+|... + .....|..+..++||+|.+.++..+..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~-~-----------------------STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL-G-----------------------STAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh-c-----------------------cchhhccCCcccccceeEeecceeeeccccc
Confidence 489999999999999999998421 1 133567778888999999999987754
Q ss_pred -----CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 -----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 -----~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
+..+++|+|+|||...+++.+.|+...|.++||||+..|. +.||.|++.+...+-.+ ++||+||+|.
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------QtQtAEcLiig~~~c~k-lvvvinkid~ 134 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QTQTAECLIIGELLCKK-LVVVINKIDV 134 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------ccccchhhhhhhhhccc-eEEEEecccc
Confidence 2357899999999999999999999999999999999996 58999999887777655 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccC----ccccccccCCCCCCCChhhHHHHHhh-CCCCCCC
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRD 270 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g----~~i~~~~~~~~~~w~~g~~L~~~l~~-l~~~~~~ 270 (476)
...+..+..+++...++++-|+..+|. ++.|++++||+.| +++.+ |.++|.. +-.|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRD 198 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcC
Confidence 666666778888999999999999986 6789999999999 44444 5566654 6788999
Q ss_pred CCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccc
Q 011836 271 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 271 ~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 348 (476)
...||.|.|+++| +|.|+|.+|+|.+|.|+.|+.|.+...+..-+|+|++++++++.+|.+||++++++...+...+.
T Consensus 199 ~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klle 278 (522)
T KOG0461|consen 199 EEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLE 278 (522)
T ss_pred CCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHh
Confidence 9999999999999 79999999999999999999999988888889999999999999999999999999988888889
Q ss_pred eeeEEecCCCCcccccEEEEEEEEcccccc--ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCC--c--c------cc
Q 011836 349 SGFVLSSVAKPVAAVTEFIAQLQILELLDN--AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK--K--P------MK 416 (476)
Q Consensus 349 ~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~--~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~--~--~------~~ 416 (476)
||-+ +.++ ......|-+..++.+.. .+|..-.+..+-+++.++.+.+.-+. ..|.-+. + . ..
T Consensus 279 Rgi~-~~pg----~Lk~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E~d 352 (522)
T KOG0461|consen 279 RGIC-GPPG----TLKSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGEFD 352 (522)
T ss_pred cccc-CCCc----ccceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccccc
Confidence 9844 3333 23333444444332332 56666667777777777777776543 1121110 0 0 11
Q ss_pred ccceeecCCCEEEEEEEEcceEEeeecc
Q 011836 417 KKVLFVKNGAIVVCRIQVNNSICTEKFA 444 (476)
Q Consensus 417 ~~~~~l~~g~~a~v~~~~~~pi~~~~~~ 444 (476)
--|..+.+.+...+-|+|++||.+..++
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 2356677888889999999999988864
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-38 Score=309.18 Aligned_cols=281 Identities=25% Similarity=0.355 Sum_probs=234.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.+||+|+.|+|||||||+..||..+|.+..++- .-..+||.+..|++|||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~---------------v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREE---------------VAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccc---------------hhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 46799999999999999999999999999887531 124689999999999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.+++|+|||||.||-.++.+.++..|.++|+|||.+|.+ +||+-.++.+..+|.+ .||||||+|++.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~A---- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDA---- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999986 8999999999999998 6799999999766
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCccccccccCCCCCCCChhhHHH-HHhhCCCCCCCCCCCceEEEE
Q 011836 203 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~-~l~~l~~~~~~~~~~~~~~i~ 280 (476)
+-+++.+++-.++-.++-.. +-++|++..||+.|..-..+.+... --.| |++ +++.+|.|..+.+.||++.+.
T Consensus 136 -rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~---~m~p-Lfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 136 -RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEAD---DMAP-LFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred -CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccccc---chhH-HHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 34566677777777776431 2367999999999975444322100 0112 444 778899999899999999887
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 281 ~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
..- .-.|++..|||++|++++||.|.+...+ ...+|..+.-+ +.++++|.|||+|+ +.|+. ++..|+
T Consensus 211 ~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~igd 286 (603)
T COG1217 211 QLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINIGD 286 (603)
T ss_pred eeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--cccccc
Confidence 542 4689999999999999999999887654 46788888765 67899999999999 58874 589999
Q ss_pred EEecCCCC
Q 011836 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
++|+++++
T Consensus 287 Ti~d~~~~ 294 (603)
T COG1217 287 TICDPDNP 294 (603)
T ss_pred cccCCCCc
Confidence 99998743
No 35
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-39 Score=316.94 Aligned_cols=266 Identities=23% Similarity=0.326 Sum_probs=228.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.+|++|+.|+|||||||..+||..+|.+++...+ ..+||..+.||+||||+..-...+-+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 678999999999999999999999999998875433 3579999999999999999887777777
Q ss_pred ---eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 123 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ---~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+.+++||||||.||..++.+.+..||++||||||.+|+. .||...+.++...|.. +|.|+||+|++.++
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvq-------AQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQ-------AQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCch-------HHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 999999999999999999999999999999999999984 8999999999999998 89999999998775
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEE
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 279 (476)
.+++.+++...+... ..+++.+||++|.|+.++ |..+++.+|+|....++|||+.+
T Consensus 194 -----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 194 -----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred -----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHh
Confidence 345666666665432 347999999999999985 56688999999999999999999
Q ss_pred EEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccCC-ccccceeeEE
Q 011836 280 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGFVL 353 (476)
Q Consensus 280 ~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl 353 (476)
.+.|. -+|.++.++|..|.+++||+|....++++..|+.+..+ ..++....|||...|.. ++. ..+...|+++
T Consensus 250 fds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 250 FDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEe-ccccccccccccee
Confidence 99884 58999999999999999999999999988888888776 35666777777666533 333 4678999999
Q ss_pred ecCC
Q 011836 354 SSVA 357 (476)
Q Consensus 354 ~~~~ 357 (476)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 9765
No 36
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=330.70 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=229.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..+||+++||+|||||||+++|++.+|.+..... .-.++||..++|+++|+|+......+++.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~ 67 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWND 67 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCC
Confidence 35799999999999999999999998888765321 013789999999999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|||||+.+|+. .|++.++..+..+++| .||++||||++.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a---- 135 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA---- 135 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC----
Confidence 999999999999999999999999999999999999864 7999999999999999 6889999999654
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCccccccccC--CCCCCCChhhHHHHHhhCCCCCCCCCCCceEEE
Q 011836 203 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~~--~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 279 (476)
+++++.+++..++..++... ..++|++++||++|++..+..+. ...+| |..+++.+|.|.++.+.||++.|
T Consensus 136 -~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V 209 (607)
T PRK10218 136 -RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQI 209 (607)
T ss_pred -chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEE
Confidence 34556667777766554431 13578999999999975443210 01122 34567788988888889999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecC-Cc--eEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 280 ~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~-~~--~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
++++ +..|++++|||++|+|+.||.|++.+. +. ..+|.+|+.+ +.++++|.|||+|++ .|+ .++..|
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~G 285 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNIS 285 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccC
Confidence 9986 568999999999999999999999876 43 5788888765 679999999999994 665 458899
Q ss_pred eEEecCCC
Q 011836 351 FVLSSVAK 358 (476)
Q Consensus 351 ~vl~~~~~ 358 (476)
|+|+++++
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998763
No 37
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=2.5e-38 Score=297.08 Aligned_cols=218 Identities=64% Similarity=1.049 Sum_probs=196.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.++...+.++++.+...|.+++.|++++|..++|++||+|++.....+++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999999999999999988898888889999999999999999999999999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|+|||||.+|...++.+++.+|++|+|||+.++.++..|....|+.+++..+..++++++||++||||++.++|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999766655554579999999888888777999999999965556778899
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCC
Q 011836 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 267 (476)
Q Consensus 207 ~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~ 267 (476)
++.+++..+++.+++.. .+++++|+||++|.|+.+..+ .++||+|++|++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 99999999999888752 357999999999999998765 59999999999999987553
No 38
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.6e-37 Score=328.50 Aligned_cols=267 Identities=22% Similarity=0.384 Sum_probs=220.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
..+||+++||+|||||||+++|++.+|.++.+.+ ..+.+|+.++|+++|+|+......+.|.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREM----------------REQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccc----------------cccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 4799999999999999999999999988875421 2567899999999999999887777653
Q ss_pred ---CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ---~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
.+.++|||||||.+|...+.++++.+|++|||+|+.++.. .|+.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------AQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 3789999999999999999999999999999999999863 6888888888888998 8999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
+ .++..+++... +++. ...++++||++|.|+.++ |..+++.+|.|..+.+.|+++.
T Consensus 138 ~-----~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 D-----PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred C-----HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 12333344333 3332 225899999999999984 3344567888888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECC---eeeeeeCCCCeEEEEeccCC-ccccceeeE
Q 011836 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 352 (476)
Q Consensus 279 i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~---~~v~~a~aG~~v~i~l~~~~-~~~i~~G~v 352 (476)
|.+++ ++.|++++|||.+|+|++||+|++.|++...+|.+|+.++ .+++++.||| +++.+.|++ ..++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 99988 5789999999999999999999999999999999999875 7889999999 555566664 367999999
Q ss_pred EecCCCC
Q 011836 353 LSSVAKP 359 (476)
Q Consensus 353 l~~~~~~ 359 (476)
|++.+++
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987643
No 39
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.2e-37 Score=329.72 Aligned_cols=269 Identities=24% Similarity=0.387 Sum_probs=222.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..+||+++||+|||||||+++|++.+|.++.+.+ ..+++|+.++|++||+|+......+.|.
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~ 67 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYK 67 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEE
Confidence 346789999999999999999999999998876431 2578999999999999999887777664
Q ss_pred -----CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 122 -----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 -----~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
++.++|||||||.+|...+.++++.+|++|||||+.+|.. .|+.+++..+...++| +|+|+||+|+.
T Consensus 68 ~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-------~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 68 AKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred ccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 6889999999999999999999999999999999999863 6899999888888998 89999999995
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCce
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~ 276 (476)
.++ ++++.+++... +++. ...++++||++|.|+.++ |..++..+|.|..+.+.|++
T Consensus 140 ~a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~L-------------l~~I~~~lp~P~~~~~~pl~ 195 (600)
T PRK05433 140 AAD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEV-------------LEAIVERIPPPKGDPDAPLK 195 (600)
T ss_pred ccc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHH-------------HHHHHHhCccccCCCCCCce
Confidence 432 22333444333 3332 235899999999999884 33344668888888889999
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccCC-cccccee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSG 350 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~~-~~~i~~G 350 (476)
+.|.+++ +..|++++|||.+|+|++||+|++.|++...+|.+|+.+ ..+++++.|||++.+ +.|++ ..++++|
T Consensus 196 ~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~G 274 (600)
T PRK05433 196 ALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVG 274 (600)
T ss_pred EEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCC
Confidence 9999988 578999999999999999999999999999999999875 578999999995554 45553 3679999
Q ss_pred eEEecCCCC
Q 011836 351 FVLSSVAKP 359 (476)
Q Consensus 351 ~vl~~~~~~ 359 (476)
|+|++.+++
T Consensus 275 dtl~~~~~~ 283 (600)
T PRK05433 275 DTITLAKNP 283 (600)
T ss_pred CEEECCCCc
Confidence 999987643
No 40
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-37 Score=302.88 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=231.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+..+|+.|+.|.|||||||..+|+..+|.++.+.|. +.++|....||+|||||......+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEE
Confidence 44678999999999999999999999999999998865 56899999999999999987776554
Q ss_pred -----CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 -----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 -----~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
+.+.++|||||||-||..++.++++.|.+++|||||..|+ +.||.....++...+.. +|-|+||+|+
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3489999999999999999999999999999999999997 38999999999999997 9999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~ 275 (476)
+.++ .++++.++...+ |+. .-..+.+||++|.|+.++ |...+..+|+|..+.+.|+
T Consensus 141 P~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 8765 335556665554 544 236789999999999995 5668889999999999999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccC-Cccccce
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILS 349 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~ 349 (476)
+..|.|+| .-.|.|+..||..|++++||+|.++.+++...|..+..+ ..+++...||+...+.. |+ +..+.+.
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a-~iK~v~d~~V 275 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIA-GIKDVRDARV 275 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEE-eeeecccCcc
Confidence 99999988 458999999999999999999999999999999999887 56788999999877633 33 3367999
Q ss_pred eeEEecCC
Q 011836 350 GFVLSSVA 357 (476)
Q Consensus 350 G~vl~~~~ 357 (476)
||+++...
T Consensus 276 GDTiT~~~ 283 (603)
T COG0481 276 GDTITLAS 283 (603)
T ss_pred cceEeccC
Confidence 99999554
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=2.2e-36 Score=281.76 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=186.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.++...+.+++.+....++.++.+++++|..++|+++|+|++.....+++.+.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999999999999988888888777778888888999999999999999999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|+|||||.+|...+..++..+|++|+|+|+..+.. .++.+++.++...+.|++|+|+||+|+ .++.++.++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999998853 578888888888888778889999999 445567788
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCC
Q 011836 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 267 (476)
Q Consensus 207 ~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~ 267 (476)
++..++..+++.+++. ..+++|+||++|.|+.+... .++||.|++|+++|+.+++|
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8888999889888864 46799999999999998764 59999999999999998875
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.7e-34 Score=265.14 Aligned_cols=192 Identities=32% Similarity=0.487 Sum_probs=164.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+++||+++||+|||||||+++|++... ..|+..+...+.+|..++|++||+|++.....|+++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 368999999999999999999987531 22322222235789999999999999999999999999
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
+++|+|||||.+|...+.+++..+|++++|||+..|+. .|+++++.++..+++|++|+++||||+. + .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~~--~-~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-------PQTREHLLLARQVGVPYIVVFLNKADMV--D-DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCcEEEEEeCCCCC--C-cHH
Confidence 99999999999999999999999999999999999863 7999999999999998788999999994 2 455
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCC-hhhHHHHHhhCCC
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 266 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~-g~~L~~~l~~l~~ 266 (476)
.++.+.+++..+++.+|++ ..+++++|+||++|.|+.+ .++||+ +++|+++|+.+.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~-~~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFD-GDNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhccc-ccCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 6777889999999999986 3478999999999999765 378997 7999999987643
No 43
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.8e-33 Score=306.25 Aligned_cols=289 Identities=22% Similarity=0.327 Sum_probs=220.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
+....+||+++||+|||||||+++|++.+|.++... .| .++++|+.++|++||+|++.+...+.|
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~ 80 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMVH 80 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEEE
Confidence 345689999999999999999999999999887632 12 156799999999999999998776655
Q ss_pred ----CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 121 ----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ----~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.+++++|+|||||.+|...+.++++.+|++|+|||+.+|+. .||+.++..+...++| .|+++||||+.
T Consensus 81 ~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-------~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 81 EYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-------PQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred EecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-------ccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 47899999999999999999999999999999999999963 7999999999889998 68999999986
Q ss_pred CCC------chHHHHHHHHHHHHHHHHhcC---------CCccCCeeEEEeecccCcccccc--ccC-------------
Q 011836 197 TVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTR--VDK------------- 246 (476)
Q Consensus 197 ~~~------~~~~~~~~~~~~l~~~l~~~g---------~~~~~~~~iipiSa~~g~~i~~~--~~~------------- 246 (476)
.++ ..+.++.++.+++..++..+. +.+ .+-.+++.|++.+++.... .+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~ 231 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDV-EDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEK 231 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecC-CCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhc
Confidence 443 234556666667766666442 111 1124667799888776510 000
Q ss_pred ----CCCCCCC-hhhHHHH-HhhCCCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEEE
Q 011836 247 ----SLCPWWN-GPCLFEA-LDRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGK 293 (476)
Q Consensus 247 ----~~~~w~~-g~~L~~~-l~~l~~~~~-------------------------~~~~~~~~~i~~~~--~~~G~v~~G~ 293 (476)
....|+. -..|++. .+.+|.|.. +.+.|+.+.|.+++ +..|.+++||
T Consensus 232 ~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~R 311 (731)
T PRK07560 232 GKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGR 311 (731)
T ss_pred CCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEE
Confidence 0000000 0124443 344666631 23457888888887 4679999999
Q ss_pred EEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 294 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 294 v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
|++|+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+|++|+.+.
T Consensus 312 V~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 312 VFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 99999999999999998888899999765 578999999999996 4653 477899998765
No 44
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-33 Score=296.46 Aligned_cols=273 Identities=23% Similarity=0.286 Sum_probs=214.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.+||+|+||+|||||||+.+||+.+|.++..+ .....+..||+.+.|++||+||..+..++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G-------------~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG-------------EVHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc-------------cccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 56789999999999999999999999999988632 11123668999999999999999999999999
Q ss_pred C-eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 122 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~-~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
+ +.++|||||||-||...+.++++.+|+||+||||.+|+. +||...|+++..+++| .|+++||||+..+++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGADF 145 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccCh
Confidence 5 999999999999999999999999999999999999985 8999999999999999 678999999977764
Q ss_pred hHHHHHHHHHHHHHHHHh----cCC-------------------------------------------------------
Q 011836 201 SKERYDEIESKMTPFLKA----SGY------------------------------------------------------- 221 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~----~g~------------------------------------------------------- 221 (476)
. ...+++...|.. .+.
T Consensus 146 ~-----~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 146 Y-----LVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred h-----hhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 2 111222221111 000
Q ss_pred ---------------------------CccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC-----
Q 011836 222 ---------------------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR----- 269 (476)
Q Consensus 222 ---------------------------~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~----- 269 (476)
.....++.++-||.++.|+..+ |..+++.+|.|..
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~l-------------Ldav~~~lPsP~e~~~~~ 287 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPL-------------LDAVVDYLPSPLDVPPIK 287 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHH-------------HHHHHHHCCChhhccccc
Confidence 0011345555566655555543 2334555666511
Q ss_pred ---------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011836 270 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 270 ---------------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
+.+.|+...+..+. +..|.+.++||+||+|+.||.++....+++.+|..|..+ +.++++
T Consensus 288 g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~ 367 (697)
T COG0480 288 GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDE 367 (697)
T ss_pred ccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeeccc
Confidence 23578888888877 457999999999999999999999888888999999765 578999
Q ss_pred eCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 329 AGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
+.||++++ +.|++. ...|++|++.+
T Consensus 368 ~~AG~I~a--~~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 368 VPAGDIVA--LVGLKD--ATTGDTLCDEN 392 (697)
T ss_pred ccCccEEE--EEcccc--cccCCeeecCC
Confidence 99999999 477644 68999999776
No 45
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=8.7e-33 Score=299.23 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=208.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
...++||+|+||+|+|||||+++|++.+|.+...+ +. ...++++|+.++|++||+|++.....+.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g------------~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIG------------EV-HDGAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccc------------cc-cCCcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 45689999999999999999999999888765321 11 123679999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+++++|+|||||.+|..++.++++.+|++|+|||+..|+. .|+++++.++..+++| +|+++||||+..++
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~-------~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVE-------PQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999963 7999999999999999 67999999996543
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCc-cccccc------------------------------------
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRV------------------------------------ 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~~------------------------------------ 244 (476)
+.+..++++..+... .....+|+|+..+. |+.++.
T Consensus 144 ---~~~~~~~i~~~l~~~-----~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (693)
T PRK00007 144 ---FYRVVEQIKDRLGAN-----PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKL 215 (693)
T ss_pred ---HHHHHHHHHHHhCCC-----eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHH
Confidence 223334443333221 01234455444430 000000
Q ss_pred -----------------------------------cCCCCCCCCh--------hhHHH-HHhhCCCCCC-----------
Q 011836 245 -----------------------------------DKSLCPWWNG--------PCLFE-ALDRIEITPR----------- 269 (476)
Q Consensus 245 -----------------------------------~~~~~~w~~g--------~~L~~-~l~~l~~~~~----------- 269 (476)
.....|.+.| ..|++ ++..+|.|..
T Consensus 216 ~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 295 (693)
T PRK00007 216 IEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 (693)
T ss_pred HHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCc
Confidence 0001111111 12444 4455666531
Q ss_pred ---------CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCe
Q 011836 270 ---------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGEN 334 (476)
Q Consensus 270 ---------~~~~~~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~ 334 (476)
+++.|+...|.++.. ..|.++++||+||+|++||.|+....++..+|.+|+.. ..+++++.|||+
T Consensus 296 ~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI 375 (693)
T PRK00007 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI 375 (693)
T ss_pred cccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE
Confidence 235678888888873 56999999999999999999987666677888888765 578999999999
Q ss_pred EEEEeccCCccccceeeEEecCC
Q 011836 335 LRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 335 v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
|++ .|++ +++.|++|++.+
T Consensus 376 ~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 376 AAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEE--eCCc--cCCcCCEeeCCC
Confidence 995 6664 478999998755
No 46
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=7e-33 Score=291.64 Aligned_cols=251 Identities=29% Similarity=0.414 Sum_probs=194.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++||+|||||||+++|.. +.+. ....+|+|++.+...+.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~--~~v~-----------------------------~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRK--TKVA-----------------------------QGEAGGITQHIGAYHVEN 131 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------cccCCceeecceEEEEEE
Confidence 345668999999999999999999942 1111 112468999988888888
Q ss_pred CCe-EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 121 ETT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 121 ~~~-~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
.+. .++|||||||.+|...+.++++.+|++|||+|+++|.. +||.+++..+...++| +||++||+|+++++
T Consensus 132 ~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~ 203 (587)
T TIGR00487 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEAN 203 (587)
T ss_pred CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCC
Confidence 655 99999999999999999999999999999999999864 7999999999999999 99999999996543
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCc---cCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCce
Q 011836 200 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 276 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~ 276 (476)
+ + ++.+.+ ...|+.. ..+.+++|+||++|.|+.++.+. +. .+..+.....+++.|++
T Consensus 204 ~--e---~v~~~L----~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~ 263 (587)
T TIGR00487 204 P--D---RVKQEL----SEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQAS 263 (587)
T ss_pred H--H---HHHHHH----HHhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCce
Confidence 2 1 222222 2222210 12468999999999999986442 11 11223333345668999
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEE-CCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~-~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
++|.+++ ++.|++++|+|.+|+|++||.|.++|. ..+|++|+. +++.+++|.||+.|.+ .|++. -...|+.+
T Consensus 264 ~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i--~Gl~~-~p~aGd~~ 338 (587)
T TIGR00487 264 GVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEI--LGLSD-VPAAGDEF 338 (587)
T ss_pred eEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEE--eCCCC-CCCCCCEE
Confidence 9999998 688999999999999999999999885 579999998 5778999999999986 36542 12678888
Q ss_pred ec
Q 011836 354 SS 355 (476)
Q Consensus 354 ~~ 355 (476)
.-
T Consensus 339 ~~ 340 (587)
T TIGR00487 339 IV 340 (587)
T ss_pred EE
Confidence 74
No 47
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=5.2e-33 Score=298.76 Aligned_cols=251 Identities=28% Similarity=0.423 Sum_probs=196.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++||+|||||||+++|.. +.+. ....+|+|++.+.+.+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEE
Confidence 356778999999999999999999942 2111 112478999999888999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.++|||||||.+|..++.++++.+|++|||||+.+|.. +||.+++..+...++| +||++||||++..+
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~- 405 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPGAN- 405 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECccccccC-
Confidence 99999999999999999999999999999999999999864 7999999999999999 99999999995433
Q ss_pred hHHHHHHHHHHHHH---HHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceE
Q 011836 201 SKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 201 ~~~~~~~~~~~l~~---~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 277 (476)
.+ .+..++.. +...+| .+++++|+||++|.|+.++++. +....+ +.....+.+.|++.
T Consensus 406 -~e---~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e-~~~l~~~~~~~~~g 466 (787)
T PRK05306 406 -PD---RVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAE-VLELKANPDRPARG 466 (787)
T ss_pred -HH---HHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhh-hhhcccCCCCCcEE
Confidence 22 23332222 111221 3578999999999999987543 111111 11223456788999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCcccc-ceeeEE
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVL 353 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i-~~G~vl 353 (476)
.|.+++ ++.|.+++|+|.+|+|+.||.|++++ ...+|++|+.. +.++++|.||+.|.+ .|++. + ..||+|
T Consensus 467 ~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I--~gl~~--~p~~Gd~l 540 (787)
T PRK05306 467 TVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEI--LGLSG--VPQAGDEF 540 (787)
T ss_pred EEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEE--eCCCC--CCCCCCEE
Confidence 999987 57899999999999999999999965 57899999984 779999999999996 45543 4 689999
Q ss_pred ecC
Q 011836 354 SSV 356 (476)
Q Consensus 354 ~~~ 356 (476)
+..
T Consensus 541 ~~~ 543 (787)
T PRK05306 541 VVV 543 (787)
T ss_pred EEc
Confidence 843
No 48
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.5e-32 Score=297.59 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=207.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....+||+|+||+|+|||||+++|++.+|.+...+ +. ....+++|+.++|++||+|++.....++|+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~------------~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG------------EV-HDGAATMDWMEQEQERGITITSAATTCFWK 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccc------------cc-cCCccccCCChhHhhcCCCccceeEEEEEC
Confidence 45689999999999999999999999888764321 10 123678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+++++|+|||||.+|..++.++++.+|++|+|||+.+|+. .|+++++..+...++| +|+++||||+..++
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~-------~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVE-------PQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999863 7999999999999999 68999999996543
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-----------------------------------------------------------
Q 011836 202 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 222 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~----------------------------------------------------------- 222 (476)
+.++.++++..+....+.
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 218 (691)
T PRK12739 142 ---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA 218 (691)
T ss_pred ---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 333444444443221100
Q ss_pred ------------------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHH-HhhCCCCCC--
Q 011836 223 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITPR-- 269 (476)
Q Consensus 223 ------------------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~-l~~l~~~~~-- 269 (476)
....+|++..||+++.|+.. |++. +..+|.|..
T Consensus 219 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~ 284 (691)
T PRK12739 219 EVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVP 284 (691)
T ss_pred hcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhcc
Confidence 00012233334444433333 4443 344666531
Q ss_pred -----------------CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceee
Q 011836 270 -----------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 326 (476)
Q Consensus 270 -----------------~~~~~~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v 326 (476)
+++.|+...|.+++. ..|.++++||+||+|+.||.|+....++..+|.+|+.. ..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 364 (691)
T PRK12739 285 AIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEI 364 (691)
T ss_pred ccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccc
Confidence 345688889998873 57999999999999999999987777777888888764 5789
Q ss_pred eeeCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 327 RHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 327 ~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++.|||++++ .|++ +++.|++|++.+
T Consensus 365 ~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 365 KEVYAGDIAAA--VGLK--DTTTGDTLCDEK 391 (691)
T ss_pred cccCCCCEEEE--eCCC--cccCCCEEeCCC
Confidence 99999999996 4664 378999998664
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.9e-32 Score=283.28 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=211.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.+||+|+||+|||||||+++|++..|.++..+..+ +++ ......+|+.+.|++||+|+......+++.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~--------~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceee--------ccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 4579999999999999999999999888876543110 000 0112347889999999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++++|+|||||.+|...+.++++.+|++|+|||+.+|+. .++++.+..+...++| +++++||||+..+++.
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~- 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-------PQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL- 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCcccccCHH-
Confidence 999999999999999999999999999999999999863 6899999999999999 8899999999665421
Q ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 219 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~--------------------------------------------------------------- 219 (476)
++.++++..+...
T Consensus 150 ----~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~ 225 (526)
T PRK00741 150 ----ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLR 225 (526)
T ss_pred ----HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHH
Confidence 2222222222100
Q ss_pred ----------------CCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCC---------CCCC
Q 011836 220 ----------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGP 274 (476)
Q Consensus 220 ----------------g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~~ 274 (476)
.+....-+|++..||+++.|+..+ |..++..+|.|... .+.+
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~P~P~~~~~~~~~~~~~~~~ 292 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEF-------------LDAFVEWAPAPQPRQTDEREVEPTEEK 292 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHH-------------HHHHHHHCCCCCcccccceeecCCCCc
Confidence 000011256777888888888774 33355566766421 2345
Q ss_pred ceEEEEEEE-----ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcc
Q 011836 275 FRMPIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~i~~~~-----~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~ 345 (476)
+...|+.+. +.+|++++.||.||+|+.|+.|+....++..++..++.. +.++++|.|||++++ .++ .
T Consensus 293 ~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~~l--~ 368 (526)
T PRK00741 293 FSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--HNH--G 368 (526)
T ss_pred eEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE--ECC--C
Confidence 777777765 357999999999999999999999888888999887654 578999999999985 554 4
Q ss_pred ccceeeEEecCC
Q 011836 346 DILSGFVLSSVA 357 (476)
Q Consensus 346 ~i~~G~vl~~~~ 357 (476)
+++.||+|+..+
T Consensus 369 ~~~~GDTL~~~~ 380 (526)
T PRK00741 369 TIQIGDTFTQGE 380 (526)
T ss_pred CCccCCCccCCC
Confidence 589999998755
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=2.2e-31 Score=288.69 Aligned_cols=282 Identities=22% Similarity=0.279 Sum_probs=207.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+++||+|+||+|||||||+++|++.+|.+...+ + ...+++.+|+.+.|+++|+|++.....++|
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~------------~-~~~g~~~~D~~~~e~~rgiti~~~~~~~~~ 72 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG------------E-VHDGAATMDWMEQEKERGITITSAATTVFW 72 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccc------------c-ccCCccccCCCHHHHhcCCCEecceEEEEE
Confidence 345689999999999999999999999888764321 0 012468899999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++++++|+|||||.+|...+..+++.+|++|+|||+.+|.. .|+.+++..+...++| +++++||+|+..++
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~- 143 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETVWRQANRYEVP-RIAFVNKMDKTGAN- 143 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCC-EEEEEECCCCCCCC-
Confidence 99999999999999999999999999999999999999863 6889999999999999 67899999996543
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCc-ccc--------------------------------------
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMK-------------------------------------- 241 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~-------------------------------------- 241 (476)
+.+..+++...+.... ...++|+|+..+. ++.
T Consensus 144 ----~~~~~~~i~~~l~~~~-----~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 214 (689)
T TIGR00484 144 ----FLRVVNQIKQRLGANA-----VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENL 214 (689)
T ss_pred ----HHHHHHHHHHHhCCCc-----eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHH
Confidence 2334444444332111 1124444443332 000
Q ss_pred ------------------------cc--------ccCCCCCCCCh--------hhHHHH-HhhCCCCCC-----------
Q 011836 242 ------------------------TR--------VDKSLCPWWNG--------PCLFEA-LDRIEITPR----------- 269 (476)
Q Consensus 242 ------------------------~~--------~~~~~~~w~~g--------~~L~~~-l~~l~~~~~----------- 269 (476)
++ .....+|.+.| ..|++. +..+|.|..
T Consensus 215 ~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 294 (689)
T TIGR00484 215 VEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDT 294 (689)
T ss_pred HHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCC
Confidence 00 00001111111 224443 345666531
Q ss_pred --------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeE
Q 011836 270 --------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENL 335 (476)
Q Consensus 270 --------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v 335 (476)
+++.|+...|.++. +..|.++++||+||+|+.||.|+....+...+|..|+.. ..+++++.|||+|
T Consensus 295 ~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~ 374 (689)
T TIGR00484 295 EKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDIC 374 (689)
T ss_pred CceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEE
Confidence 22567888888877 467999999999999999999998766667788888664 4689999999999
Q ss_pred EEEeccCCccccceeeEEecCC
Q 011836 336 RIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 336 ~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
++ .|++ ++..|++|++.+
T Consensus 375 ~i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 375 AA--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred EE--cCCC--CCCCCCEEeCCC
Confidence 96 5664 468999998765
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.9e-31 Score=276.75 Aligned_cols=275 Identities=19% Similarity=0.212 Sum_probs=206.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.+||+++||+|||||||+++|++..|.+...+..+ ++.+ .....+|+.+.|++||+|+......+++.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~--------~~g~-~~~t~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVK--------GRGS-QRHAKSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceec--------cccc-cccccCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 4579999999999999999999999888876543110 1111 112458999999999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++++|+|||||.+|...+.++++.+|++|+|||+..++. .++..++..+...++| +++++||+|+..++
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~~P-iivviNKiD~~~~~--- 148 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-------TRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD--- 148 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECccccCCC---
Confidence 999999999999999999999999999999999998852 6888999988888998 88999999995543
Q ss_pred HHHHHHHHHHHHHHHhcCCC------------------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLKASGYN------------------------------------------------------------ 222 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~------------------------------------------------------------ 222 (476)
++++.++++..+....+.
T Consensus 149 --~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 226 (527)
T TIGR00503 149 --PLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLR 226 (527)
T ss_pred --HHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHH
Confidence 223333333333211100
Q ss_pred -------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHH-HHhhCCCCCCC---------CCC
Q 011836 223 -------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRD---------PNG 273 (476)
Q Consensus 223 -------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~-~l~~l~~~~~~---------~~~ 273 (476)
...-+|+++.||.++.|+.. |++ +++.+|.|... .+.
T Consensus 227 ~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------LLd~i~~~~PsP~~~~~~~~~~~~~~~ 292 (527)
T TIGR00503 227 DELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH--------------FLDGLLQWAPKPEARQSDTRTVEPTEE 292 (527)
T ss_pred HHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH--------------HHHHHHHHCCCCccccCCceecCCCCC
Confidence 00112444445555555554 344 45556766432 235
Q ss_pred CceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCc
Q 011836 274 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 344 (476)
Q Consensus 274 ~~~~~i~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~ 344 (476)
++...|+.+.. .+|++++.||.||+|+.|++|+....+++.++..++.+ +.++++|.|||++++ .++
T Consensus 293 ~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~~~-- 368 (527)
T TIGR00503 293 KFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--HNH-- 368 (527)
T ss_pred CeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE--ECC--
Confidence 67667776642 57999999999999999999999888888999988764 678999999999985 554
Q ss_pred cccceeeEEecCC
Q 011836 345 EDILSGFVLSSVA 357 (476)
Q Consensus 345 ~~i~~G~vl~~~~ 357 (476)
.+++.||+|++.+
T Consensus 369 ~~~~~GDtl~~~~ 381 (527)
T TIGR00503 369 GTIQIGDTFTQGE 381 (527)
T ss_pred CCcccCCEecCCC
Confidence 4589999998744
No 52
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-32 Score=268.42 Aligned_cols=262 Identities=27% Similarity=0.396 Sum_probs=204.5
Q ss_pred chhhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE
Q 011836 32 AESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti 111 (476)
..++.++.....+.+.|.|+||+|||||||+.+|... .+... -..|||.
T Consensus 140 ~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks--~VAA~-----------------------------E~GGITQ 188 (683)
T KOG1145|consen 140 PQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKS--SVAAG-----------------------------EAGGITQ 188 (683)
T ss_pred cCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhC--ceehh-----------------------------hcCCccc
Confidence 3444566666778899999999999999999998422 11111 1368999
Q ss_pred EeeeEEEEe-CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011836 112 EVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 112 ~~~~~~~~~-~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 190 (476)
..+.+..+. ++..++|+|||||.-|..+..+|+..+|.++|||.|.+|++ +||.|.++.++..++| +||++
T Consensus 189 hIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAi 260 (683)
T KOG1145|consen 189 HIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAI 260 (683)
T ss_pred eeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEE
Confidence 998876544 56899999999999999999999999999999999999986 8999999999999999 99999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHH---HHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCC
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 267 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~---~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~ 267 (476)
||+|.++++.. .+++++.. .+..+| ++++++|+||++|.|+..|.+..+ |+..+-.+
T Consensus 261 nKiDkp~a~pe-----kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~eail--------l~Ae~mdL--- 320 (683)
T KOG1145|consen 261 NKIDKPGANPE-----KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEAIL--------LLAEVMDL--- 320 (683)
T ss_pred eccCCCCCCHH-----HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHHHH--------HHHHHhhc---
Confidence 99999877622 23333322 234443 589999999999999998644310 11122222
Q ss_pred CCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCc
Q 011836 268 PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEE 344 (476)
Q Consensus 268 ~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~ 344 (476)
..++..|+...|.+.. +++|.+++..|..|+|++|+.++. +...++|+++..+ .+++++|.|++.|.+ .|++.
T Consensus 321 kA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~--G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~Gwkd 396 (683)
T KOG1145|consen 321 KADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA--GKSWCKVRALFDHNGKPIDEATPSQPVEV--LGWKD 396 (683)
T ss_pred ccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEE--echhhhhhhhhhcCCCCccccCCCCceEe--ecccC
Confidence 2346788999998876 799999999999999999999988 5668899999876 789999999999985 66652
Q ss_pred cccceeeEEecCC
Q 011836 345 EDILSGFVLSSVA 357 (476)
Q Consensus 345 ~~i~~G~vl~~~~ 357 (476)
--..||.+...+
T Consensus 397 -lP~aGD~vleVe 408 (683)
T KOG1145|consen 397 -LPIAGDEVLEVE 408 (683)
T ss_pred -CCCCCceEEEEe
Confidence 234687776544
No 53
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.98 E-value=2.3e-31 Score=244.14 Aligned_cols=175 Identities=36% Similarity=0.593 Sum_probs=152.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE--e
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 120 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~ 120 (476)
|+.+||+++||+|||||||+++|++..+.+...+..+. ....+|..++|+++|+|++.....+. +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEET-------------KNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHH-------------HHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhcccccccccccc-------------ccccccccchhhhcccccccccccccccc
Confidence 56899999999999999999999999998887654320 13357888999999999999999999 9
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.++|+|||||.+|.+++.++++.+|++|+|||+.+|.. .|+++++..+..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-------~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-------PQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-------HHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccc-------cccccccccccccccc-eEEeeeeccch----
Confidence 99999999999999999999999999999999999999963 7999999999999999 99999999993
Q ss_pred hHHHHHHHHHHHH-HHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~-~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.++++..+++. .+++..++.....++++|+||++|+|+..+
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 567778888887 566777765213689999999999999984
No 54
>PRK13351 elongation factor G; Reviewed
Probab=99.98 E-value=1.5e-30 Score=282.75 Aligned_cols=273 Identities=22% Similarity=0.300 Sum_probs=212.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....+||+++||+|+|||||+++|++.+|.+..... .+. ..+.+|+.+.|+++|+|+......+.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v~~------~~~~~d~~~~e~~r~~ti~~~~~~~~~~ 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------VED------GTTVTDWMPQEQERGITIESAATSCDWD 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------ccC------CcccCCCCHHHHhcCCCcccceEEEEEC
Confidence 345799999999999999999999998887654320 001 2467899999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++.++|||||||.+|...+..+++.+|++++|+|+..+.. .++.+++..+...++| +++++||+|+..+++
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~- 142 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVWRQADRYGIP-RLIFINKMDRVGADL- 142 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCCCCCCCH-
Confidence 9999999999999999999999999999999999999863 5788899989889999 788999999976542
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Q 011836 202 KERYDEIESKMTPFLKAS-------------------------------------------------------------- 219 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~-------------------------------------------------------------- 219 (476)
.+..++++..+...
T Consensus 143 ----~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 143 ----FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred ----HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 22333333222110
Q ss_pred ------------C--CC-------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC---
Q 011836 220 ------------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 269 (476)
Q Consensus 220 ------------g--~~-------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~--- 269 (476)
+ +. ....+|++..||++|.|+..+ |..++..+|.|..
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~L-------------Ld~I~~~lPsP~~~~~ 285 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPL-------------LDAVVDYLPSPLEVPP 285 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHH-------------HHHHHHHCCChhhccc
Confidence 0 00 011346666788888888774 2234455666532
Q ss_pred ---------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011836 270 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 270 ---------------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
+++.|+.+.|.+++ +..|.++++||++|+|++||+|++.+.+...+|..|+.. ..++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 365 (687)
T PRK13351 286 PRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDR 365 (687)
T ss_pred ccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCc
Confidence 34578999999887 467999999999999999999999988888888888654 578999
Q ss_pred eCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 329 AGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
|.|||+++ +.|++ ++..|++|++.+
T Consensus 366 ~~aGdI~~--i~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 366 AKAGDIVA--VAGLK--ELETGDTLHDSA 390 (687)
T ss_pred cCCCCEEE--EECcc--cCccCCEEeCCC
Confidence 99999997 46664 467899998764
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.98 E-value=7e-31 Score=279.86 Aligned_cols=252 Identities=25% Similarity=0.379 Sum_probs=190.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
-..+.++|+++||+|||||||+++|+..... ..+.+|+|.+...+.+.+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~ 288 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEF 288 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEE
Confidence 3456789999999999999999999543221 122467888776665554
Q ss_pred ----CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 121 ----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ----~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.+..++|||||||..|..++.+++..+|++|||||+.+|.. +||.+++..+...++| +||++||+|++
T Consensus 289 ~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 289 EYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred EecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 35899999999999999999999999999999999999864 7999999999999999 99999999995
Q ss_pred CCCchHHHHHHHHHHHHHH---HHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCC
Q 011836 197 TVNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNG 273 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~---l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~ 273 (476)
..+ ++++.+++..+ ...+| ..++++++||++|.|+.++++. +... ..+.....+++.
T Consensus 361 ~~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l-~e~~~lk~~~~~ 420 (742)
T CHL00189 361 NAN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLL-AEIEDLKADPTQ 420 (742)
T ss_pred ccC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhh-hhhhcccCCCCC
Confidence 432 22333333221 11222 2478999999999999986442 1111 111222234456
Q ss_pred CceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 274 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 274 ~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
|+...+.+.. ++.|.+++|+|.+|+|++||.|+++| ...+|++|... +.++.+|.||+.|.+ .|++ .....|
T Consensus 421 ~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~G 495 (742)
T CHL00189 421 LAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATG 495 (742)
T ss_pred CceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCC
Confidence 7888888776 57899999999999999999999987 46899999854 788999999999985 5553 235678
Q ss_pred eEEecC
Q 011836 351 FVLSSV 356 (476)
Q Consensus 351 ~vl~~~ 356 (476)
+.+.-.
T Consensus 496 d~l~v~ 501 (742)
T CHL00189 496 EHFQVF 501 (742)
T ss_pred CEEEEe
Confidence 887744
No 56
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.3e-31 Score=256.66 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=205.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++++|+-|||||||||+..||...|+|...+.-+- |.+ .-....|+..-|++|||++..+.-.|++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~--------rk~-~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~ 81 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKG--------RKS-GKHAKSDWMEIEKQRGISVTSSVMQFDYADC 81 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeee--------ccC-CcccccHHHHHHHhcCceEEeeEEEeccCCe
Confidence 4589999999999999999999988888776542221 111 1123456778999999999999999999999
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.++|+|||||+||...+.+.+..+|.||+||||..|+ ++||+..+..++..++| ++-+|||||+..-+ .-+
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~E 152 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PLE 152 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hHH
Confidence 9999999999999999999999999999999999997 38999999999999999 99999999995443 334
Q ss_pred HHHHHHHHHHHHHHhcCCCcc-------------C---------------------------------------------
Q 011836 204 RYDEIESKMTPFLKASGYNVK-------------K--------------------------------------------- 225 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~-------------~--------------------------------------------- 225 (476)
.++++.+++.-....+.|+.. +
T Consensus 153 LLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL 232 (528)
T COG4108 153 LLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELEL 232 (528)
T ss_pred HHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHH
Confidence 444554444333333333210 0
Q ss_pred -----------------CeeEEEeecccCccccccccCCCCCCCChhhHHH-HHhhCCCCCCC---------CCC---Cc
Q 011836 226 -----------------DVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRD---------PNG---PF 275 (476)
Q Consensus 226 -----------------~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~-~l~~l~~~~~~---------~~~---~~ 275 (476)
..|++.-||+.+-|+.. |++ +++.-|+|... .+. .|
T Consensus 233 ~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~--------------~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGF 298 (528)
T COG4108 233 VQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH--------------FLDALVDWAPSPRARQADTREVEPTEDKFSGF 298 (528)
T ss_pred HHhhccccCHHHHhcCCccceEehhhhhccCHHH--------------HHHHHHhhCCCCCcccCCcCcccCCCCccceE
Confidence 01233333333333332 333 34444554321 122 24
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccce
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 349 (476)
.|-|+..+ +.+.++++.||.||.+..|+++.....++.+++..-+.+ ++.+++|.|||+++|.-.|. ++.
T Consensus 299 VFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~----~~I 374 (528)
T COG4108 299 VFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGT----IQI 374 (528)
T ss_pred EEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCc----eee
Confidence 55555544 468999999999999999999999999999998887654 78899999999999755544 889
Q ss_pred eeEEecCC
Q 011836 350 GFVLSSVA 357 (476)
Q Consensus 350 G~vl~~~~ 357 (476)
||+++..+
T Consensus 375 GDT~t~Ge 382 (528)
T COG4108 375 GDTFTEGE 382 (528)
T ss_pred cceeecCc
Confidence 99999764
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=3e-30 Score=280.36 Aligned_cols=289 Identities=21% Similarity=0.336 Sum_probs=209.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE---
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--- 117 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~--- 117 (476)
..+..+||+++||+|+|||||+++|++.+|.++... .| -.+.+|+.++|+++|+|++.....
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~-----~~~~~d~~~~e~~rg~Ti~~~~~~~~~ 79 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----QQLYLDFDEQEQERGITINAANVSMVH 79 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CC-----ceeecCCCHHHHhhcchhhcccceeEE
Confidence 445679999999999999999999999999876531 12 135789999999999999987654
Q ss_pred -EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 118 -FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 118 -~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
+++.+++++|+|||||.+|...+.++++.+|++|+|+|+..|+. .++.+++..+...++| +++++||||+.
T Consensus 80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~ 151 (720)
T TIGR00490 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVM-------PQTETVLRQALKENVK-PVLFINKVDRL 151 (720)
T ss_pred eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCC-------ccHHHHHHHHHHcCCC-EEEEEEChhcc
Confidence 67788999999999999999999999999999999999999863 7899999998889998 67999999996
Q ss_pred CCCc------hHHHHHHHHHHHHHHHHhcC---------CCccCCeeEEEeecccCcccc------------cccc----
Q 011836 197 TVNW------SKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMK------------TRVD---- 245 (476)
Q Consensus 197 ~~~~------~~~~~~~~~~~l~~~l~~~g---------~~~~~~~~iipiSa~~g~~i~------------~~~~---- 245 (476)
.+++ .+++|......+...+.... +.+ .+......|++.+++.. ++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 230 (720)
T TIGR00490 152 INELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRV-EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKE 230 (720)
T ss_pred cchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEech-hhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHh
Confidence 5432 23455555555555553320 000 00112223444442210 0000
Q ss_pred C---CCCCCCC-hhhHHHHH-hhCCCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEEE
Q 011836 246 K---SLCPWWN-GPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGK 293 (476)
Q Consensus 246 ~---~~~~w~~-g~~L~~~l-~~l~~~~~-------------------------~~~~~~~~~i~~~~--~~~G~v~~G~ 293 (476)
. ....|.. -..|++.+ ..+|.|.. +.+.|+...|.+++ ++.|++++||
T Consensus 231 ~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~R 310 (720)
T TIGR00490 231 DKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGR 310 (720)
T ss_pred ccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEE
Confidence 0 0001111 12344433 34566531 22457888888886 5689999999
Q ss_pred EEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 294 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 294 v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
|+||+|++||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+||+|++++
T Consensus 311 V~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 311 LYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred EEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 99999999999999999999999999875 468999999999986 5554 578999998765
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.3e-30 Score=257.54 Aligned_cols=233 Identities=28% Similarity=0.444 Sum_probs=183.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
+.+.|+++||+|||||||++.+. ...+..+ -.-|+|.+.+.+.+.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR--~t~Va~~-----------------------------EaGGITQhIGA~~v~~~~~ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR--KTNVAAG-----------------------------EAGGITQHIGAYQVPLDVI 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh--cCccccc-----------------------------cCCceeeEeeeEEEEeccC
Confidence 46789999999999999999984 2222211 24689999999999885
Q ss_pred -CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 -~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
...++|||||||+-|..+..+|...+|.++||||+++|.+ +||.|.+..++..++| +||++||||+++++.
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np 124 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEANP 124 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCCH
Confidence 4699999999999999999999999999999999999975 8999999999999999 999999999986653
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCc---cCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceE
Q 011836 201 SKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 277 (476)
. .+..+ +.+.|+.+ ..++.++|+||++|+|+.+|.+. .-.+.....-...++.+.+.
T Consensus 125 ~-----~v~~e----l~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~-----------ill~aev~elka~~~~~a~g 184 (509)
T COG0532 125 D-----KVKQE----LQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL-----------ILLLAEVLELKANPEGPARG 184 (509)
T ss_pred H-----HHHHH----HHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHH-----------HHHHHHHHhhhcCCCCcceE
Confidence 3 22332 23335432 35689999999999999996442 11222222333456788888
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEE
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 337 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i 337 (476)
.+.++. ++.|.+++..|..|+|++||.|.++. ...+|+.+... ..++..+.++..+.+
T Consensus 185 tviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 185 TVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEEEeccCCCceEEEEEecCeEecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEE
Confidence 998877 78999999999999999999999954 45688888765 677888887766553
No 59
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.7e-31 Score=262.60 Aligned_cols=276 Identities=23% Similarity=0.273 Sum_probs=217.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
-.+.+||++..|.|||||||.+++||..|.+..-+. . .|+ ...||+.+.||+||+|++.+..++.|.
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e------v--~~~-----~a~md~m~~er~rgITiqSAAt~~~w~ 102 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE------V--RGG-----GATMDSMELERQRGITIQSAATYFTWR 102 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccc------c--ccC-----ceeeehHHHHHhcCceeeeceeeeeec
Confidence 347899999999999999999999999987765331 1 111 467999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++++++||||||.||..++.++++..|+||+|+|+..|+ +.||...+++++.+++| .|.++||||+.+++..
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPF 174 (721)
T ss_pred cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChH
Confidence 999999999999999999999999999999999999997 48999999999999999 6789999999877641
Q ss_pred H----------------------------------------------------------HHHHHHHHHHHHHHHhc----
Q 011836 202 K----------------------------------------------------------ERYDEIESKMTPFLKAS---- 219 (476)
Q Consensus 202 ~----------------------------------------------------------~~~~~~~~~l~~~l~~~---- 219 (476)
. +...+..+++-+.+...
T Consensus 175 ~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l 254 (721)
T KOG0465|consen 175 RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETL 254 (721)
T ss_pred HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 1 22222222222222111
Q ss_pred ----------------------CCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC--------
Q 011836 220 ----------------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-------- 269 (476)
Q Consensus 220 ----------------------g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~-------- 269 (476)
.++ ...+|++.-||+++.|+..+ |...++.+|.|..
T Consensus 255 ~e~fLee~~ps~~~l~~aIRr~Ti~-r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 255 AEMFLEEEEPSAQQLKAAIRRATIK-RSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhh-cceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhccccccc
Confidence 111 23458888899999999875 4456666665521
Q ss_pred ------------CCC-CCceEEEEEEEcc-CCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCC
Q 011836 270 ------------DPN-GPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGP 331 (476)
Q Consensus 270 ------------~~~-~~~~~~i~~~~~~-~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~a 331 (476)
..+ .||....+....+ .|...+.||++|+|+.||.|+....++++||..+.+. .++++++.|
T Consensus 321 e~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~A 400 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLA 400 (721)
T ss_pred CCCCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhc
Confidence 012 2666666665543 4999999999999999999999999999999988654 478999999
Q ss_pred CCeEEEEeccCCccccceeeEEecCC
Q 011836 332 GENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 332 G~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
||+|+ |.|+ +...||++++..
T Consensus 401 G~I~a--lfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 401 GDICA--LFGI---DCASGDTFTDKQ 421 (721)
T ss_pred cceee--eecc---ccccCceeccCc
Confidence 99999 4666 688999999873
No 60
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.3e-31 Score=245.08 Aligned_cols=348 Identities=22% Similarity=0.343 Sum_probs=264.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.+..+||+.+||+.|||||++.++ +|.-.- ..+.|-+|++|+..++.....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAi---SGv~Tv-------------------------rFK~ELERNITIKLGYANAKIY 86 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAI---SGVHTV-------------------------RFKNELERNITIKLGYANAKIY 86 (466)
T ss_pred heeeeeecceeccccCcceeeeee---ccceEE-------------------------EehhhhhcceeEEeccccceEE
Confidence 355799999999999999999887 332111 123445667777766542110
Q ss_pred ------------------------------------CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccc
Q 011836 121 ------------------------------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETG 164 (476)
Q Consensus 121 ------------------------------------~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~ 164 (476)
--+++.|+|+|||.-.+.+|+.|+...|+++|+|.+++...
T Consensus 87 kc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCP--- 163 (466)
T KOG0466|consen 87 KCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCP--- 163 (466)
T ss_pred ecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCC---
Confidence 02568999999999999999999999999999999998753
Q ss_pred cCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 165 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 165 ~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
++||.||+.....+..+|++++-||+|+.. ++...+-.+++.+|++.... ++.|++|+||.-+.|++.
T Consensus 164 ---QPQTsEHLaaveiM~LkhiiilQNKiDli~----e~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~-- 231 (466)
T KOG0466|consen 164 ---QPQTSEHLAAVEIMKLKHIIILQNKIDLIK----ESQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDV-- 231 (466)
T ss_pred ---CCchhhHHHHHHHhhhceEEEEechhhhhh----HHHHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHH--
Confidence 699999999999999999999999999943 33444555666667765443 467999999999999987
Q ss_pred cCCCCCCCChhhHHH-HHhhCCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCCc-
Q 011836 245 DKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA- 312 (476)
Q Consensus 245 ~~~~~~w~~g~~L~~-~l~~l~~~~~~~~~~~~~~i~~~~~----------~~G~v~~G~v~sG~l~~g~~v~~~p~~~- 312 (476)
+.+ .+..+|.|.++...|.++.+.++|. -.|-|+.|.+..|.|++||.+.+.|+-.
T Consensus 232 ------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~ 299 (466)
T KOG0466|consen 232 ------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVT 299 (466)
T ss_pred ------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceee
Confidence 444 5677999999999999999999983 2688999999999999999999999631
Q ss_pred ------------eEEEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEccccc
Q 011836 313 ------------QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD 377 (476)
Q Consensus 313 ------------~~~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~ 377 (476)
-.+|.|++..+.+++.|.||..+++..+ .+-..|-..|.||...+..|....+++...++|..+-
T Consensus 300 kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrll 379 (466)
T KOG0466|consen 300 KDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLL 379 (466)
T ss_pred ecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHh
Confidence 1345566667899999999999998654 1222345578899998988989999999888764221
Q ss_pred -----------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccC
Q 011836 378 -----------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFAD 445 (476)
Q Consensus 378 -----------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~ 445 (476)
+ ..+..|-..++++|+..+-+++..+.. -.+++.|..|+|.+.++.
T Consensus 380 gvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~----------------------d~~k~~Lt~P~CteigEk 437 (466)
T KOG0466|consen 380 GVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA----------------------DMAKIQLTSPVCTEIGEK 437 (466)
T ss_pred ccccccccccchhhhcccCcEEEEEecccccCceEEEEec----------------------ceeeeEecCchhcccchh
Confidence 0 235566677888888888888776431 156788999999988753
Q ss_pred ccccceEEEEeCCcEEEEEEEEE
Q 011836 446 FAQLGRFTLRTEGKTVAVGKVTE 468 (476)
Q Consensus 446 ~~~lgrfilr~~~~tvg~G~V~~ 468 (476)
-+++|.+=+ .=|.+|.|.|..
T Consensus 438 -iAlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 438 -IALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred -hhhhhhhhh-heEEecceeEeC
Confidence 334554321 248899998864
No 61
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=2.7e-29 Score=272.67 Aligned_cols=264 Identities=23% Similarity=0.316 Sum_probs=205.9
Q ss_pred EecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEEEeC
Q 011836 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 130 (476)
Q Consensus 51 vG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDt 130 (476)
+||+|||||||+++|++.+|.+...+ +. + ...+++|+.+.|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~--~~-----~------~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG--EV-----E------DGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc--cc-----c------CCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999999876431 00 0 12378999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHH
Q 011836 131 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 210 (476)
Q Consensus 131 PGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~ 210 (476)
|||.+|...+.+++..+|++|+|+|+..+.. .++..++..+...++| +++++||+|+...++ .++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~-----~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGADF-----FRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH-----HHHHH
Confidence 9999999999999999999999999998853 5788888888889998 788999999965432 22222
Q ss_pred HHHHHHHhc-----------------------------------------------------------------------
Q 011836 211 KMTPFLKAS----------------------------------------------------------------------- 219 (476)
Q Consensus 211 ~l~~~l~~~----------------------------------------------------------------------- 219 (476)
+++..+...
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 232221100
Q ss_pred --CC-------------CccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCC----------------
Q 011836 220 --GY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 268 (476)
Q Consensus 220 --g~-------------~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~---------------- 268 (476)
.+ .....+|++..||++|.|+..+ |..++..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCcccccc
Confidence 00 0012357788899999999874 333445566663
Q ss_pred -CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEecc
Q 011836 269 -RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 341 (476)
Q Consensus 269 -~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~ 341 (476)
.+++.|+.+.|.+++ +..|.++++||++|+|++||+|++.+.++..+|..|+.. ..++++|.|||++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 134578889999987 456999999999999999999999988777787777653 5789999999999974 6
Q ss_pred CCccccceeeEEecCC
Q 011836 342 IEEEDILSGFVLSSVA 357 (476)
Q Consensus 342 ~~~~~i~~G~vl~~~~ 357 (476)
++ .+++|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 64 489999998654
No 62
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=3.2e-29 Score=264.57 Aligned_cols=260 Identities=24% Similarity=0.355 Sum_probs=189.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
.+.+.|+++||+|||||||+++|...... .....++|.+.+...+.+.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-------------------------------~~~~g~itq~ig~~~~~~~~ 52 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA-------------------------------AKEAGGITQHIGATEVPIDV 52 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc-------------------------------cCCCCceEEeeceeeccccc
Confidence 45678999999999999999999532111 0112334444333222111
Q ss_pred -----------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc
Q 011836 122 -----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 122 -----------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 184 (476)
-..++|+|||||.+|...+.++++.+|+++||+|+.+|.. +|+.+++..+...++|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-------~qt~e~i~~~~~~~vp 125 (586)
T PRK04004 53 IEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-------PQTIEAINILKRRKTP 125 (586)
T ss_pred cccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC
Confidence 0127999999999999999999999999999999999853 7999999999999999
Q ss_pred eEEEEEeeccCCCCCch------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCeeEEEeecccC
Q 011836 185 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 237 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~------------------~~~~~~~~~~l~~~l~~~g~~~---------~~~~~iipiSa~~g 237 (476)
+++++||+|+.. .|. ++.|++...++...|...|+.. ..+++++|+||++|
T Consensus 126 -iIvviNK~D~~~-~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG 203 (586)
T PRK04004 126 -FVVAANKIDRIP-GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG 203 (586)
T ss_pred -EEEEEECcCCch-hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC
Confidence 899999999842 232 3456666667777788777653 24689999999999
Q ss_pred ccccccccCCCCCCCChhhHHHHHhh-CCC-CCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc-
Q 011836 238 LNMKTRVDKSLCPWWNGPCLFEALDR-IEI-TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 312 (476)
Q Consensus 238 ~~i~~~~~~~~~~w~~g~~L~~~l~~-l~~-~~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~- 312 (476)
+|+.++.+. +...... ++. ...+.+.|++++|.+++ ++.|++++|+|.+|+|++||.|.++|...
T Consensus 204 eGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~ 273 (586)
T PRK04004 204 EGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGP 273 (586)
T ss_pred CChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCc
Confidence 999886432 2221211 222 12456789999999998 68899999999999999999999999874
Q ss_pred -eEEEEEEEEC------------CeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 313 -QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 313 -~~~V~si~~~------------~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
..+|++|..+ ...+++|.|...|-+...|++. +..|+-+.
T Consensus 274 i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~~~ 326 (586)
T PRK04004 274 IVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLED--ALAGSPLR 326 (586)
T ss_pred ceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccc--cCCCCeEE
Confidence 5799999875 2566777777767664445543 34555544
No 63
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=3.9e-29 Score=275.30 Aligned_cols=156 Identities=21% Similarity=0.295 Sum_probs=130.5
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.+....+||+|+||+|||||||+++|++.+|.++... .| ..+.+|..++|++||+|++.+...+.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~ 78 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLY 78 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEE
Confidence 3466789999999999999999999999999876531 11 25678999999999999998877776
Q ss_pred eC----------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC
Q 011836 120 TE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 183 (476)
Q Consensus 120 ~~----------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i 183 (476)
|. ++.++|||||||.+|..++.++++.+|++|+||||.+|+. .||++++.++...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~~~ 151 (843)
T PLN00116 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERI 151 (843)
T ss_pred eecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHCCC
Confidence 63 6789999999999999999999999999999999999974 799999999999999
Q ss_pred ceEEEEEeeccCCCCCc---h---HHHHHHHHHHHHHHHHh
Q 011836 184 TKLLLVVNKMDDHTVNW---S---KERYDEIESKMTPFLKA 218 (476)
Q Consensus 184 p~~ivviNK~D~~~~~~---~---~~~~~~~~~~l~~~l~~ 218 (476)
| +|+++||||++..++ . ...++++.++++.++..
T Consensus 152 p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~ 191 (843)
T PLN00116 152 R-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMAT 191 (843)
T ss_pred C-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9 789999999952221 1 25677788888744433
No 64
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.96 E-value=1.6e-28 Score=258.20 Aligned_cols=259 Identities=21% Similarity=0.377 Sum_probs=182.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
+.+.|+++||+|||||||+++|+...- .. ....|+|.+.+...+.+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~-----------------------------~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AK-----------------------------REAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--cc-----------------------------ccCCceecccCeeEeeeccc
Confidence 356899999999999999999964211 10 112345554444433321
Q ss_pred ----------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCce
Q 011836 122 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 185 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~ 185 (476)
...++|+|||||+.|...+.++++.+|+++||+|+.+|.. +|+.+++..+...++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e~i~~l~~~~vp- 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYKTP- 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHHHHHHHHHcCCC-
Confidence 1248999999999999999999999999999999999853 7999999999989998
Q ss_pred EEEEEeeccCCCCCchH------------------HHHHHHHHHHHHHHHhcCCCc---------cCCeeEEEeecccCc
Q 011836 186 LLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGL 238 (476)
Q Consensus 186 ~ivviNK~D~~~~~~~~------------------~~~~~~~~~l~~~l~~~g~~~---------~~~~~iipiSa~~g~ 238 (476)
+|+++||+|+.. .|.. ..+++....+...+...|+.. ..+++++|+||++|+
T Consensus 124 iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 899999999952 2311 011112222223345555532 246899999999999
Q ss_pred cccccccCCCCCCCChhhHHHHHhh-CCC-CCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc--
Q 011836 239 NMKTRVDKSLCPWWNGPCLFEALDR-IEI-TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA-- 312 (476)
Q Consensus 239 ~i~~~~~~~~~~w~~g~~L~~~l~~-l~~-~~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~-- 312 (476)
|+.++... |...... ++. ...+.+.|++++|.+++ +|.|++++|.|.+|+|++||.|+++|.+.
T Consensus 203 GideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i 272 (590)
T TIGR00491 203 GIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVI 272 (590)
T ss_pred ChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcc
Confidence 99986431 2211111 211 12356789999999998 58899999999999999999999999874
Q ss_pred eEEEEEEEECC------------eeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 313 QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 313 ~~~V~si~~~~------------~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
..+|++|...+ ..+.++.|..-+-+...|++. ...|+.+.
T Consensus 273 ~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~~ 324 (590)
T TIGR00491 273 VTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPIR 324 (590)
T ss_pred cEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEEE
Confidence 68999998653 355666666656655566543 34566554
No 65
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=3.6e-28 Score=267.16 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=129.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....+||+++||+|||||||+++|++.+|.++... .| ..+.+|..++|++||+|++.+...+.|.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AG-----DARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeecccchhhHhhcceeeccceEEEee
Confidence 56688999999999999999999999999876531 22 1456899999999999999887777765
Q ss_pred ----------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 122 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 122 ----------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
++.++|+|||||.+|..++.++++.+|++|+|||+.+|+. .||++++..+...++| +|+++|
T Consensus 81 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 81 HDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred cccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999999974 7999999999999998 789999
Q ss_pred eccCCCCCch------HHHHHHHHHHHHHHHH
Q 011836 192 KMDDHTVNWS------KERYDEIESKMTPFLK 217 (476)
Q Consensus 192 K~D~~~~~~~------~~~~~~~~~~l~~~l~ 217 (476)
|||+.-.++. ...++++.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999522211 3567788888887776
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=1.8e-27 Score=222.17 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=142.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC----
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|||||||+++|++.+|.++.+. .| ..+.+|...+|++||+|+..+...+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999988776542 11 1467999999999999999887655554
Q ss_pred ------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
++.++|+|||||.+|...+..+++.+|++|+|+|+.+|.. .|+++++..+...++| +|+++||+|+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999964 6899999999888998 8999999998
Q ss_pred C------CCCchHHHHHHHHHHHHHHHHhcCCCc-----cCC--e-e----EEEeecccCcccc
Q 011836 196 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNMK 241 (476)
Q Consensus 196 ~------~~~~~~~~~~~~~~~l~~~l~~~g~~~-----~~~--~-~----iipiSa~~g~~i~ 241 (476)
. ..++...++.++.+++..+++.+.-.. .+. + | ++..|++.|+...
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~ 201 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT 201 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec
Confidence 4 233556788899999999888773110 001 1 3 6778999999773
No 67
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=3.1e-26 Score=220.59 Aligned_cols=174 Identities=26% Similarity=0.310 Sum_probs=141.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.++..+ +. ...++.+|+.++|++||+|++.....++|.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g------------~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG------------EV-HGGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-cCCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 699999999999999999999999876422 10 11367899999999999999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|+|||||.+|...+.++++.+|++|+|||+..|.. .++.+++..+...++| +++++||+|+.+++ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-------PQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 99999999999999999999999999999999863 7899999999999999 67899999996543 34
Q ss_pred HHHHHHHHHHHhcCCCccCCeeEEEeecccCc-cccccccCCCCCC
Q 011836 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVDKSLCPW 251 (476)
Q Consensus 207 ~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~~~~~~~~w 251 (476)
.+.++++..+.... ...++|+|+..+. |+.++.....+.|
T Consensus 135 ~~~~~l~~~l~~~~-----~~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANP-----VPLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCc-----eEEEeccccCCCceEEEEccccEEEec
Confidence 45566666654432 3468999997653 6666554434444
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=1.6e-25 Score=209.95 Aligned_cols=192 Identities=26% Similarity=0.402 Sum_probs=150.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcch------HHHHHHHHHHhhcCccchhhhhhcCCchhhh----hcccEEEeeeE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 116 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~------~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~----~~g~ti~~~~~ 116 (476)
+|+++|++++|||||+++|. .+.++. ..+.++.++. +.|++++...++++++.+++ ..+.+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~--~~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLT--QGELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHH--hCCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 48899999999999999995 344443 2344555444 57999988888888776543 12233333334
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHHhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 117 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~~~~~~~~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++..++.++|+|||||.+|.+.+.+++. .+|++++|||+..|.. .++++++..+..+++| +++++||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 46677899999999999999999999986 7999999999999864 7999999999999999 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCC--------------------ccCCeeEEEeecccCccccccccCCCCCCCCh
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 254 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g 254 (476)
+ . +++++.+..+++..+++..|+. ....+|++++|+.+|+|+++
T Consensus 150 ~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 L--A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred c--c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 8 3 3567888888888888754433 12345999999999999988
Q ss_pred hhHHHHHhhCCCC
Q 011836 255 PCLFEALDRIEIT 267 (476)
Q Consensus 255 ~~L~~~l~~l~~~ 267 (476)
|.++|..+|.+
T Consensus 214 --L~~~L~~lp~~ 224 (224)
T cd04165 214 --LHAFLNLLPLR 224 (224)
T ss_pred --HHHHHHhcCCC
Confidence 67788887753
No 69
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.93 E-value=2.1e-24 Score=236.90 Aligned_cols=227 Identities=23% Similarity=0.374 Sum_probs=171.1
Q ss_pred hhcccEEEeeeEEEEeCCe------------------EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccC
Q 011836 105 RIKGKTVEVGRAHFETETT------------------RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFE 166 (476)
Q Consensus 105 ~~~g~ti~~~~~~~~~~~~------------------~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~ 166 (476)
...|||++.+++.+..+.. .++|+|||||.+|...+.++++.+|++++|+|+.+|..
T Consensus 490 EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~----- 564 (1049)
T PRK14845 490 EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK----- 564 (1049)
T ss_pred cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC-----
Confidence 4689999999988776521 28999999999999988888999999999999998853
Q ss_pred CCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch---------------HHHHHHHHHH---HHHHHHhcCCCc-----
Q 011836 167 KGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS---------------KERYDEIESK---MTPFLKASGYNV----- 223 (476)
Q Consensus 167 ~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~---------------~~~~~~~~~~---l~~~l~~~g~~~----- 223 (476)
+|+.+++..+...++| +|+++||+|+.. .|. +..++++.+. +...|...|+..
T Consensus 565 --~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~ 640 (1049)
T PRK14845 565 --PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDR 640 (1049)
T ss_pred --HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhh
Confidence 7999999999999998 999999999842 232 1122222222 222356666542
Q ss_pred ----cCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCC------CCCCCCCCCceEEEEEEE--ccCCeEEE
Q 011836 224 ----KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE------ITPRDPNGPFRMPIIDKF--KDMGTVVM 291 (476)
Q Consensus 224 ----~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~------~~~~~~~~~~~~~i~~~~--~~~G~v~~ 291 (476)
..+++++|+||++|+|++++. +.|..+. ......+.|++++|.+++ ++.|++++
T Consensus 641 ~~d~~~~v~iVpVSA~tGeGId~Ll--------------~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt 706 (1049)
T PRK14845 641 VQDFTRTVAIVPVSAKTGEGIPELL--------------MMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTID 706 (1049)
T ss_pred hhhcCCCceEEEEEcCCCCCHHHHH--------------HHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEE
Confidence 246899999999999999853 2222211 122345789999999998 68899999
Q ss_pred EEEEeeeecCCCEEEEecCCc--eEEEEEEEEC------------CeeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 292 GKVESGSVREGDSLLVMPNKA--QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 292 G~v~sG~l~~g~~v~~~p~~~--~~~V~si~~~------------~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
|.|.+|+|++||.|+++|.+. ..+|++|... ..++.++.|..-|.+...|++. +..|+.+.-.
T Consensus 707 ~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~v~ 783 (1049)
T PRK14845 707 AIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIRIV 783 (1049)
T ss_pred EEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEEEe
Confidence 999999999999999999764 7899999742 2467888888888876566643 4667665543
No 70
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=4.7e-25 Score=204.71 Aligned_cols=157 Identities=28% Similarity=0.384 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC----
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|||||||+.+|. + ..+|..+.|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~-------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G-------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C-------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 589999999999999999983 1 11466677888888888877665543
Q ss_pred -----------------------C------eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH
Q 011836 122 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 122 -----------------------~------~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~ 172 (476)
+ ++++|||||||.+|...+..++..+|++++|+|+.++.. ..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~------~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP------QPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC------CcchH
Confidence 3 789999999999999999999999999999999998521 25888
Q ss_pred HHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 173 e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+++..+...+++++|+++||+|+.. +..+....+.+..+++.... ..++++++||++|.|+.++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~~----~~~~~~~~~~i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLVK----EEQALENYEQIKKFVKGTIA---ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhccC----HHHHHHHHHHHHHHHhcccc---CCCcEEEEeCCCCCCHHHH
Confidence 9998888888877899999999932 23444555666666654422 2468999999999999884
No 71
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1e-25 Score=220.62 Aligned_cols=294 Identities=23% Similarity=0.308 Sum_probs=206.7
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
-.+.++.+|+.++.|+|||||||...|....|.+.... .| -..++|+.++|++||+||..+...+
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aG-----e~Rf~DtRkDEQeR~iTIKStAISl 77 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AG-----ETRFTDTRKDEQERGITIKSTAISL 77 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cC-----CccccccccchhhcceEeeeeeeee
Confidence 34667889999999999999999999998888876421 11 2567999999999999999877653
Q ss_pred E----------------eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC
Q 011836 119 E----------------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG 182 (476)
Q Consensus 119 ~----------------~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ 182 (476)
- .++..+++||.|||-||..++-.+++..|+|++|||+.+|++ .||...+.++....
T Consensus 78 ~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ER 150 (842)
T KOG0469|consen 78 FFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIAER 150 (842)
T ss_pred hhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHHhh
Confidence 2 235789999999999999999999999999999999999998 79999999999999
Q ss_pred CceEEEEEeeccCCC--CCchHHH----HHHHHHHHHHHHHhcCCCccCCeeEE-------EeecccCcccccc------
Q 011836 183 VTKLLLVVNKMDDHT--VNWSKER----YDEIESKMTPFLKASGYNVKKDVQFL-------PISGLMGLNMKTR------ 243 (476)
Q Consensus 183 ip~~ivviNK~D~~~--~~~~~~~----~~~~~~~l~~~l~~~g~~~~~~~~ii-------piSa~~g~~i~~~------ 243 (476)
++ .++++||||++- -.++++. |+++.+.+.-.+.-+|..+..++.+. ..|+++|++..-.
T Consensus 151 Ik-Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y 229 (842)
T KOG0469|consen 151 IK-PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMY 229 (842)
T ss_pred cc-ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHH
Confidence 98 468999999731 1123322 22222222222333333222233333 3477777765210
Q ss_pred --------------------ccCCCCCCCC--------------------------------------------------
Q 011836 244 --------------------VDKSLCPWWN-------------------------------------------------- 253 (476)
Q Consensus 244 --------------------~~~~~~~w~~-------------------------------------------------- 253 (476)
+....-+|..
T Consensus 230 ~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~ 309 (842)
T KOG0469|consen 230 AKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKG 309 (842)
T ss_pred HHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceecc
Confidence 0111122321
Q ss_pred ---------------------hhhHHHHHh-hCCCC-------------------------CCCCCCCceEEEEEEEc--
Q 011836 254 ---------------------GPCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK-- 284 (476)
Q Consensus 254 ---------------------g~~L~~~l~-~l~~~-------------------------~~~~~~~~~~~i~~~~~-- 284 (476)
+.+|++.+. .+|.| .++++.|+.++|+...+
T Consensus 310 ~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPts 389 (842)
T KOG0469|consen 310 DEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTS 389 (842)
T ss_pred ccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccC
Confidence 223333222 23444 35678899999999874
Q ss_pred cCCeE-EEEEEEeeeecCCCEEEEecCCc------eEEEEEEE-------ECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 285 DMGTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIY-------CDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 285 ~~G~v-~~G~v~sG~l~~g~~v~~~p~~~------~~~V~si~-------~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
+.|+. ++|||++|.+..|+++++...+. ..-+++|+ ++-++++.+.||.+++ |-|++..-++.|
T Consensus 390 DkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvKtG 467 (842)
T KOG0469|consen 390 DKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVKTG 467 (842)
T ss_pred CCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhccC
Confidence 67875 88999999999999999875431 12234443 2358999999999999 578887777888
Q ss_pred eEEecCC
Q 011836 351 FVLSSVA 357 (476)
Q Consensus 351 ~vl~~~~ 357 (476)
.+-....
T Consensus 468 TiTt~e~ 474 (842)
T KOG0469|consen 468 TITTSEA 474 (842)
T ss_pred ceeehhh
Confidence 7665544
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=1.1e-24 Score=200.49 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=126.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC----
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++|++|+|||||+++|+...+ .+.+|....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999964311 234667778889999999988777665
Q ss_pred ----------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 122 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 122 ----------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
++.++|+|||||.+|...+..++..+|++++|+|+.++.. .++.+++..+...+.| +++++|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 6799999999999999999999999999999999998753 4667777777777887 889999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+|+...+..+...+++.+.+...+...++. .++++|+||++|.|+.++
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9999533222233444555544445444442 568999999999999983
No 73
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.92 E-value=1.8e-24 Score=204.81 Aligned_cols=143 Identities=33% Similarity=0.453 Sum_probs=121.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|+|||||+++|++.+|.+.+.+ +.. ...+.+|+.++|++||+|+......+++.+++++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g------------~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLG------------SVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccc------------ccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 689999999999999999999988876532 111 1246789999999999999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|+|||||.+|...+..+++.+|++++|+|+.++.. .++.+++..+...++| +++++||+|+..+++ ...++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-------~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-------AQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 99999999999999999999999999999999853 6889999999999999 788999999976653 33444
Q ss_pred HHHHH
Q 011836 207 EIESK 211 (476)
Q Consensus 207 ~~~~~ 211 (476)
++++.
T Consensus 139 ~i~~~ 143 (237)
T cd04168 139 EIKEK 143 (237)
T ss_pred HHHHH
Confidence 44443
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=9e-24 Score=194.81 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=136.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+++|++..+.+..... .-.+++|..+.|+.+|+|+......+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 579999999999999999999876666554320 01356788888999999999888888899999
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
++|+|||||.+|...+..+++.+|++++|+|+.++.+ .++..++..+...++| +++++||+|+... +
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-----~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPDA-----R 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999998753 4677777777778898 8899999999432 2
Q ss_pred HHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCcccccc
Q 011836 205 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~ 243 (476)
++...+++..++..++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 3344556666665554321 12568999999999999875
No 75
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.9e-25 Score=214.47 Aligned_cols=271 Identities=20% Similarity=0.286 Sum_probs=197.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
-+.+||+++.|+|+||||...+++|..|.+...+ ..+ ....++|+...||+||+|++.+...|+|.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g-------~vd------dgdtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------DVD------DGDTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------ccC------CCchHHHHHHHHHhcCceeeeeeeeccccc
Confidence 3578999999999999999999999998876532 011 235688999999999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+++++||||||-||.-++.+.++..|+++.|+|++.|+ ++||...|.++...++| -++++||||...+++
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~anf-- 171 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANF-- 171 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhhh--
Confidence 99999999999999999999999999999999999997 48999999999999999 578999999866553
Q ss_pred HHHHHHHHHHHHHHHh------------cCCC------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLKA------------SGYN------------------------------------------------ 222 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~------------~g~~------------------------------------------------ 222 (476)
+...+.+++-|.. -||+
T Consensus 172 ---e~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal 248 (753)
T KOG0464|consen 172 ---ENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNAL 248 (753)
T ss_pred ---hhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHH
Confidence 2222222222110 0110
Q ss_pred ----------------------------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHH-
Q 011836 223 ----------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL- 261 (476)
Q Consensus 223 ----------------------------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l- 261 (476)
.+.-+++.+-||.++.|+..+ ++.+
T Consensus 249 ~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqpl--------------ldavt 314 (753)
T KOG0464|consen 249 CEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPL--------------LDAVT 314 (753)
T ss_pred HHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccch--------------hhhhh
Confidence 011124555566666666653 3322
Q ss_pred hhCCCCCCCCCCCceEEEE-------EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011836 262 DRIEITPRDPNGPFRMPII-------DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 262 ~~l~~~~~~~~~~~~~~i~-------~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
-.+|.|......-+.-+-+ .+. +.+|...+.|+++|+|+.+-.|....+.++-.+..+... +..+++
T Consensus 315 mylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~q 394 (753)
T KOG0464|consen 315 MYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQ 394 (753)
T ss_pred hccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhh
Confidence 2355554433222211111 222 468999999999999999999998888887777666442 667889
Q ss_pred eCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 329 AGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
..||.+.- ..|++. .-.||+++..+
T Consensus 395 lsagnial--t~glk~--tatgdtivask 419 (753)
T KOG0464|consen 395 LSAGNIAL--TAGLKH--TATGDTIVASK 419 (753)
T ss_pred cccccEEE--Eeccee--eccCCeEEecc
Confidence 99998765 345533 56788888655
No 76
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.5e-23 Score=210.34 Aligned_cols=134 Identities=23% Similarity=0.397 Sum_probs=122.0
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
+......+|++++.|+|||||||...|+...|.++.+-..+ -++||+.++|..||||+..+....
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~ 67 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISL 67 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeecccccc
Confidence 44566789999999999999999999999999888765332 257999999999999999999888
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
...++.++|||+|||-||....-++++.+|+++++||+.+|++ .||...++++-.-+.+ +|+|+||||+
T Consensus 68 ~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 68 LHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDR 136 (887)
T ss_pred ccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhh
Confidence 8899999999999999999999999999999999999999997 7999999999999998 7899999994
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=3.7e-23 Score=193.51 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=131.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC----
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|+|||||+++|++..+.+..+ |+.....++.+|...+|+++|+|+......+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 589999999999999999999888765432 2233345667899999999999998877776543
Q ss_pred -CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC---
Q 011836 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~--- 197 (476)
.+.++|+|||||.+|...+..++..+|++|+|+|+..+.. .++.+++..+...+.| +++++||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999998752 4566777777777887 889999999841
Q ss_pred ---CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEe
Q 011836 198 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 232 (476)
Q Consensus 198 ---~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipi 232 (476)
.....++++++.+++..+++.+++++ .+.++|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 11234678888999999999887752 3445554
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=6e-23 Score=186.48 Aligned_cols=163 Identities=23% Similarity=0.396 Sum_probs=123.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-----e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 120 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~ 120 (476)
+||+++|++|+|||||+++|++..|.++++.. ..+.+++.+.++.+|+|.......+. .
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 58999999999999999999988776654221 13457777888899999887655543 3
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.+..++|+|||||.+|...+..++..+|++|+|+|+.++.. .++.+++..+...++| +++++||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 56789999999999999999999999999999999998742 4666777766677888 88999999984321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+..+++.+ .+++. ...++++||++|.|+.++
T Consensus 136 ----~~~~~~~~~~---~~~~~---~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 136 ----PERVKQQIED---VLGLD---PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred ----HHHHHHHHHH---HhCCC---cccEEEeeccCCCCHHHH
Confidence 1222233332 23332 235899999999999985
No 79
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.8e-23 Score=213.06 Aligned_cols=246 Identities=22% Similarity=0.359 Sum_probs=178.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.-+.+.++|+||+|+|||-|+..|.... -++....|+|..++..+|...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tN-------------------------------VqegeaggitqqIgAt~fp~~ 520 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTN-------------------------------VQEGEAGGITQQIGATYFPAE 520 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccc-------------------------------cccccccceeeeccccccchH
Confidence 4567789999999999999999884221 122335678888877776543
Q ss_pred C------------------eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC
Q 011836 122 T------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 183 (476)
Q Consensus 122 ~------------------~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i 183 (476)
+ --+.+||||||+.|.+..-+|.+.||.||||||..+|+ .+||.+.+.+++..+.
T Consensus 521 ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl-------epqtiESi~lLR~rkt 593 (1064)
T KOG1144|consen 521 NIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL-------EPQTIESINLLRMRKT 593 (1064)
T ss_pred HHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC-------CcchhHHHHHHHhcCC
Confidence 1 23789999999999999999999999999999999995 4899999999999999
Q ss_pred ceEEEEEeeccCCCCCch------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCeeEEEeeccc
Q 011836 184 TKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 236 (476)
Q Consensus 184 p~~ivviNK~D~~~~~~~------------------~~~~~~~~~~l~~~l~~~g~~~---------~~~~~iipiSa~~ 236 (476)
| |||++||+|+. -+|. +..|..-.+.+..-|...|++. ...+.++|+||.+
T Consensus 594 p-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 594 P-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred C-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 9 99999999984 2331 1233333344444445555431 2357899999999
Q ss_pred CccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---
Q 011836 237 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--- 311 (476)
Q Consensus 237 g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--- 311 (476)
|+|+..|+- | |.++-..........-..++..|.++- .|.|+.+-..+..|.|+.||.|+++..+
T Consensus 672 GeGipdLl~-----l-----lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 672 GEGIPDLLL-----L-----LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred CCCcHHHHH-----H-----HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 999988531 0 221111111111123456777787764 7999999999999999999999998654
Q ss_pred -------------ceEEEEEEEECCeee-------------eeeCCCCeEEE
Q 011836 312 -------------AQVKVLAIYCDDNRV-------------RHAGPGENLRI 337 (476)
Q Consensus 312 -------------~~~~V~si~~~~~~v-------------~~a~aG~~v~i 337 (476)
+..||++=|+||+.+ +.|.||-.+-+
T Consensus 742 vTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 742 VTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred hHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 357899988886544 45667766655
No 80
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.90 E-value=9e-23 Score=196.42 Aligned_cols=150 Identities=26% Similarity=0.373 Sum_probs=122.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.+||+++||+|||||||+++|++.+|.++..+... ++. .....++|+.++|++||+++......+++.+++
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~--------~~~-~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVK--------ARK-SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceec--------ccc-cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 48999999999999999999999999887543111 000 112346899999999999999999999999999
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
++|+|||||.+|...+..+++.+|++|+|+|+..+.. .++..++..+...++| +++++||+|+..++
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-------~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~----- 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-------PQTRKLFEVCRLRGIP-IITFINKLDREGRD----- 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-------HHHHHHHHHHHhcCCC-EEEEEECCccCCCC-----
Confidence 9999999999999999999999999999999998852 5788888888888999 88999999986553
Q ss_pred HHHHHHHHHHHH
Q 011836 205 YDEIESKMTPFL 216 (476)
Q Consensus 205 ~~~~~~~l~~~l 216 (476)
+.++.++++..+
T Consensus 140 ~~~~~~~l~~~l 151 (267)
T cd04169 140 PLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHH
Confidence 223444554444
No 81
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=5.8e-22 Score=176.88 Aligned_cols=155 Identities=28% Similarity=0.487 Sum_probs=119.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-CeEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRF 125 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~ 125 (476)
+|+++|++|+|||||+++|.... .+....+..+++|++..+..+.+. +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 78999999999999999994210 111233455788888887777776 7899
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
.++||||+.+|...+..+++.+|++++|+|+.++.. .++.+++..+...+.+++++++||+|+.. +..+
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~~ 122 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDWL 122 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHHH
Confidence 999999999999988889999999999999988643 57778777777778744999999999942 2234
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+...+++...++..++. ..+++++||++|.|+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 123 ELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHH
Confidence 44555666666654322 468999999999999884
No 82
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.88 E-value=2.3e-22 Score=166.98 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.9
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~ 441 (476)
.+.+|+|++.||+. .+++|.+||++.+|+++.+++|+|.+|.+++|+++|+..+++|++|++|+.+.|+|++.+|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 46899999999663 12678999999999999999999999999999999887788999999999999999999999999
Q ss_pred eccCccccceEEEEeCCcEEEEEEEEEc
Q 011836 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tvg~G~V~~~ 469 (476)
+|++++.||||+||++|+|+|+|.|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999864
No 83
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.87 E-value=2.2e-21 Score=160.92 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=98.8
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~ 441 (476)
.+++|+|+++|++. ..+|..||++.+|+++..++|+|.+|.+++|.++++..+++|++|++|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~A~v~~l~~--~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e 79 (107)
T cd04093 2 SSTRFEARILTFNV--DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLE 79 (107)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEE
Confidence 47899999999542 3789999999999999999999999999999999887778899999999999999999999999
Q ss_pred eccCccccceEEEEeCCcEEEEEEEEEc
Q 011836 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tvg~G~V~~~ 469 (476)
+|++++.+|||+||++|.|+|+|+|+++
T Consensus 80 ~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 80 LFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 9999999999999999999999999875
No 84
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.2e-20 Score=172.33 Aligned_cols=170 Identities=31% Similarity=0.524 Sum_probs=131.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|+........... .....++....+..+++|++.....++..+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 5899999999999999999765443222110 0113456667778889999988888888899999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|+||||+.+|...+..+++.+|++++|+|+..+.. .+..+.+..+...+.| +++++||+|+.. ++.+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999999999999999999999999998752 4667777777777887 999999999943 23455
Q ss_pred HHHHHHHHHHHhcCCC--------ccCCeeEEEeecccCcccccc
Q 011836 207 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 207 ~~~~~l~~~l~~~g~~--------~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+.+...++..+.. .....+++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 5666676677665531 012578999999999999885
No 85
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.85 E-value=6e-21 Score=157.47 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.2
Q ss_pred cccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEe
Q 011836 362 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 440 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~ 440 (476)
.+++|+|+++|| ++ .++.+||++.+|+++.+++|+|.+|.+++|.++++..+++|++|++|+.+.|+|++.+|+|+
T Consensus 2 ~~~~f~A~v~~l---~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIVL---NHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEEE---CCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 468999999994 45 78999999999999999999999999999999998777889999999999999999999999
Q ss_pred eeccCccccceEEEEeCCcEEEEEEE
Q 011836 441 EKFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 441 ~~~~~~~~lgrfilr~~~~tvg~G~V 466 (476)
|+|.+++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 86
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.85 E-value=1.5e-20 Score=182.06 Aligned_cols=144 Identities=22% Similarity=0.369 Sum_probs=119.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|+|||||+++|++..|.+...+ .. ....+++|..++++.+++|+......+++.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g------------~v-~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLG------------SV-EDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCC------------ee-cCCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 689999999999999999998877654321 11 12356789999999999999999899999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 206 (476)
|||||||.+|...+..+++.+|++++|+|+..+.. .++..++..+...++| +++++||+|+...+ ++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~-----~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERAD-----FD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCCC-----HH
Confidence 99999999999999999999999999999998853 5788888888899999 77899999996543 34
Q ss_pred HHHHHHHHHH
Q 011836 207 EIESKMTPFL 216 (476)
Q Consensus 207 ~~~~~l~~~l 216 (476)
+..+.++..+
T Consensus 135 ~~~~~l~~~~ 144 (268)
T cd04170 135 KTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHh
Confidence 4555555544
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.7e-20 Score=182.70 Aligned_cols=158 Identities=24% Similarity=0.335 Sum_probs=132.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.||+|||||+|+|+...-.+.. ...|.|++.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~------------------------------~~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVS------------------------------DIAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEec------------------------------CCCCccccceeeeEEECC
Confidence 46799999999999999999999743222211 157899999999999999
Q ss_pred eEEEEEeCCCC----------cCh-HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 123 TRFTILDAPGH----------KSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh----------~~~-~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
++|.||||+|. +.| ...++.++..+|+++||+||.+|.. .|..+.+.++...|.+ +++|+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvN 297 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVN 297 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 99999999993 333 4556778899999999999999975 5999999999999999 889999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+.. .++..+++.+.++...+..++|. +++++||++|.++..+++
T Consensus 298 KWDl~~--~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 298 KWDLVE--EDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred ccccCC--chhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 999843 34567888888998888888875 899999999999988654
No 88
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.8e-19 Score=159.48 Aligned_cols=151 Identities=30% Similarity=0.448 Sum_probs=109.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC---Ce
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---TT 123 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~~ 123 (476)
.|+++|++|+|||||+++|+.. ... .....++|.+.....++.. +.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~--~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT--NVA-----------------------------AGEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc--ccc-----------------------------cccCCCeEEeeccEEEecccCCcc
Confidence 5899999999999999999531 110 1123456666665556654 68
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.++|+||||+..|...+..++..+|++++|+|+.++.. .++.+.+..+...++| +++++||+|+... ..+
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~--~~~ 120 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKPNA--NPE 120 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceecccc--cHH
Confidence 89999999999998888888999999999999998753 5777888888888998 8999999998432 222
Q ss_pred HHHHHHHHHHHHHHhc--CCCccCCeeEEEeecccCcccccc
Q 011836 204 RYDEIESKMTPFLKAS--GYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~--g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+. ..+..+.... .+ ...++++++|+++|.|+.++
T Consensus 121 ~~~---~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 121 RVK---NELSELGLQGEDEW--GGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred HHH---HHHHHhhccccccc--cCcCcEEEeecccCCCHHHH
Confidence 222 2222221110 11 12468999999999999884
No 89
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.81 E-value=1.8e-19 Score=148.29 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=91.9
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~ 441 (476)
.+.+|+|+++|++ ..++.+||.+.+|+++.+++|+|.+|.+++|+++++ ..+|++|+.|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~--~~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLE--HEAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCC--ccCCCEECCCCeEEEEEEeCCccEec
Confidence 4678999999954 458999999999999999999999999999999887 34889999999999999999999999
Q ss_pred eccCccccceEEEE--eCCcEEEEEEE
Q 011836 442 KFADFAQLGRFTLR--TEGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfilr--~~~~tvg~G~V 466 (476)
+|.+++.+|||+|+ ++|.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 99999999999995 45999999986
No 90
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.81 E-value=3.1e-19 Score=145.34 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.5
Q ss_pred CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011836 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
|+.++++|+|++++|+. ..+|..||++.+|+++.+++|++.+|.+++| +|+.. |++|++||.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 46789999999999553 3899999999999999999999999999998 44433 99999999999999999999
Q ss_pred EeeeccCccccceEEEEeCCcEEEEEEEEEc
Q 011836 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 439 ~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~ 469 (476)
|+|+|. ||+||++|+|+|+|+|+++
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999986 9999999999999999987
No 91
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=178.12 Aligned_cols=144 Identities=21% Similarity=0.247 Sum_probs=116.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
+.|+|+|.||+|||||+|+|+...-++.. | ..|+|.|-.+...+|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~------------------------D------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS------------------------D------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee------------------------c------CCCCccCCccceeEEcCceE
Confidence 68999999999999999999754333322 2 47999999999999999999
Q ss_pred EEEeCCCCcC-----h----HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 126 TILDAPGHKS-----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~-----~----~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.+|||+|..+ + ...+..++..||++|||||+..|++ ++..+.+..++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999653 2 3344566789999999999999986 6888888999977788 99999999973
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. +.....+.++|+. ..+||||.+|.|+.++
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDL 156 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHH
Confidence 11 1222245677876 7899999999999986
No 92
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=4.5e-19 Score=183.82 Aligned_cols=156 Identities=24% Similarity=0.321 Sum_probs=120.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|++....+ .....|.|.+.....+.+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECC
Confidence 457999999999999999999996432111 11246788888777788888
Q ss_pred eEEEEEeCCCCcCh-----------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 123 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~~-----------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
..+.++||||+.+. ...+++++..+|++|+|+|+..+.. .|..+.+.++...+.| +++++|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997432 2345567889999999999999853 5778888888888888 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+. +++..+++.+.+...+...+ .++++++||++|.|+.++.+
T Consensus 293 K~Dl~----~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 293 KWDLV----DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred CccCC----CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 99983 23445666666666655443 45899999999999998765
No 93
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=3e-19 Score=167.99 Aligned_cols=153 Identities=22% Similarity=0.207 Sum_probs=106.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.--|+|+|.||+|||||+|+|+...-.+.++ ..+.|.+....-+..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~------------------------------k~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC------------------------------CcchhhhheeEEEEcCC
Confidence 456689999999999999999998655444332 12344444444466779
Q ss_pred eEEEEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.|+||||... ..+....++..+|++++|||+.++.- ......+..++..+.| +|+++||+|
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~-------~~d~~il~~lk~~~~p-vil~iNKID 125 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWG-------PGDEFILEQLKKTKTP-VILVVNKID 125 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCC-------ccHHHHHHHHhhcCCC-eEEEEEccc
Confidence 9999999999322 34555566789999999999999742 4566677777776778 889999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.... +...... +..+-....| ..++|+||++|.|+..+.
T Consensus 126 ~~~~---~~~l~~~---~~~~~~~~~f-----~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 126 KVKP---KTVLLKL---IAFLKKLLPF-----KEIVPISALKGDNVDTLL 164 (298)
T ss_pred cCCc---HHHHHHH---HHHHHhhCCc-----ceEEEeeccccCCHHHHH
Confidence 8432 1111222 2222223333 389999999999998853
No 94
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=5.6e-18 Score=171.49 Aligned_cols=134 Identities=23% Similarity=0.284 Sum_probs=109.2
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..+...+||+++||-.||||+|...|...+.- + +.+ ..-.-...+|....|++||.+|...-.++-
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp-~---~~~----------~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~ 188 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHP-D---FSK----------NTEADLRYTDTLFYEQERGCSIKSTPVTLV 188 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccc-c---ccc----------cccccccccccchhhHhcCceEeecceEEE
Confidence 45667899999999999999999999754431 0 000 000112457888999999999998765532
Q ss_pred -----eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 120 -----TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 120 -----~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
...+.++|+|||||-+|..++.++++.+|+++||||+.+|++ -+|.+.++.+.....| ++||+||+|
T Consensus 189 l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiD 260 (971)
T KOG0468|consen 189 LSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVD 260 (971)
T ss_pred EecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhH
Confidence 235779999999999999999999999999999999999986 6899999999999998 999999999
Q ss_pred C
Q 011836 195 D 195 (476)
Q Consensus 195 ~ 195 (476)
+
T Consensus 261 R 261 (971)
T KOG0468|consen 261 R 261 (971)
T ss_pred H
Confidence 7
No 95
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=1.6e-19 Score=157.95 Aligned_cols=144 Identities=21% Similarity=0.292 Sum_probs=98.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.||+|||||+|+|+...- ......|.|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-------------------------------~v~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-------------------------------KVGNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-------------------------------eecCCCCCCeeeeeEEEEecCceE
Confidence 4799999999999999999953221 111247899999888899999999
Q ss_pred EEEeCCCCcCh----HHH--HHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 126 TILDAPGHKSY----VPN--MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 126 ~liDtPGh~~~----~~~--~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
.|+|+||.-.+ ..+ +...+ ..+|++++|+||..- .+....+.++..+|+| +++++||+|+..
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 99999994322 111 12222 589999999999873 3556677778889999 999999999831
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ....--.+.+.+ .+| +|++|+||+++.|++++
T Consensus 120 ~----~g~~id~~~Ls~---~Lg------~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 120 R----KGIEIDAEKLSE---RLG------VPVIPVSARTGEGIDEL 152 (156)
T ss_dssp H----TTEEE-HHHHHH---HHT------S-EEEEBTTTTBTHHHH
T ss_pred H----cCCEECHHHHHH---HhC------CCEEEEEeCCCcCHHHH
Confidence 1 111111223333 333 58999999999999884
No 96
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=2.6e-18 Score=177.83 Aligned_cols=158 Identities=23% Similarity=0.283 Sum_probs=120.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.....+|+++|++|+|||||+++|+.....+ .....|.|.+.....+...
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~ 218 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERN 218 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEEC
Confidence 3456899999999999999999996422111 1124678887777777788
Q ss_pred CeEEEEEeCCCCcChH-----------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011836 122 TTRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~-----------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 190 (476)
+..+.++||||+.++. ..+..++..+|++|+|+|+.++.. .+..+.+..+...+.| +|+|+
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~ 290 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVV 290 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEE
Confidence 8899999999976542 223557789999999999999864 4777778888888888 99999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
||+|+. + +.+.++++.+.+...+..++ .++++++||++|.|+.++++
T Consensus 291 NK~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 291 NKWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred ECcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 999994 1 34556677777766665543 35899999999999998654
No 97
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=1e-18 Score=156.62 Aligned_cols=156 Identities=24% Similarity=0.258 Sum_probs=102.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++|++|+|||||+++|....+.. .+ ... .....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~-----------~~~--~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KG-----------LPP--SKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cC-----------Ccc--cccCCccccceEEEEECCEEEE
Confidence 58999999999999999996432210 00 000 1123344444455667789999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++|||||.+|...+...+..+|++++|+|+.+... + ......+..+. ..++| +++++||+|++... .
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~-~- 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDAL-S- 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccCC-C-
Confidence 99999999999888888999999999999986521 1 12222222222 24678 89999999985431 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++.+.+.......+. ..++++++||++|.|+.++
T Consensus 125 --~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 125 --VEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred --HHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 22333333333222332 2568999999999999874
No 98
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=7.1e-18 Score=163.48 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=97.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
.|+++|++|+|||||+|+|+...-.+ +. ...+.|.+.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~------------------------vs------~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI------------------------TS------PKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee------------------------cC------CCCCcccCcEEEEEEcCCcEEE
Confidence 58999999999999999996422111 00 1123444332233344567899
Q ss_pred EEeCCCCcCh--------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 127 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 127 liDtPGh~~~--------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
|+||||+.+. .+.+..++..+|++++|+|++.... .....+..+...+.| +++|+||+|+.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl~-- 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDNK-- 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeCC--
Confidence 9999996542 2334566789999999999997632 224455666677888 88999999983
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+ .+. ..+.+..+....++ .+++|+||++|.|++++.
T Consensus 121 ~--~~~---~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 121 F--KDK---LLPLIDKYAILEDF-----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred C--HHH---HHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHH
Confidence 2 122 22233333333333 279999999999999853
No 99
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1e-17 Score=150.49 Aligned_cols=154 Identities=23% Similarity=0.280 Sum_probs=106.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+++|+...... .+..++.|.+.....+..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------------------------VSDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------------------------ccCCCCCccCceeeEEEECCee
Confidence 4789999999999999999996322110 0112345555544556677788
Q ss_pred EEEEeCCCCcCh----------H-HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 125 FTILDAPGHKSY----------V-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 125 ~~liDtPGh~~~----------~-~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
+.++||||+.+. . ..+...+..+|++++|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999997543 1 233456679999999999998753 3445555666667777 88999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+... .....+...+.+...+...+ ..+++++||+++.|+.++
T Consensus 124 Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 124 DLVEK--DSKTMKEFKKEIRRKLPFLD-----YAPIVFISALTGQGVDKL 166 (174)
T ss_pred ccCCc--cHHHHHHHHHHHHhhccccc-----CCceEEEeccCCCCHHHH
Confidence 99432 22345555555555443322 358999999999999874
No 100
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.76 E-value=6e-18 Score=139.09 Aligned_cols=101 Identities=32% Similarity=0.537 Sum_probs=92.1
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~ 441 (476)
++++|+|++.+++. ..+|..||++.+|+++.+++|+|..|.+++|.++ ..++++++|++|+.+.|+|++++|++++
T Consensus 2 ~~~~f~a~i~~l~~--~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e 77 (102)
T cd01513 2 AVDKFVAEIYVLDH--PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALE 77 (102)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEE
Confidence 46899999988542 3689999999999999999999999999999874 4467789999999999999999999999
Q ss_pred eccCccccceEEEEeCCcEEEEEEE
Q 011836 442 KFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tvg~G~V 466 (476)
+|.+++.+|||+||+.|+|+|+|+|
T Consensus 78 ~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 78 TFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9999999999999999999999986
No 101
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.2e-17 Score=145.98 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=100.3
Q ss_pred EEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEEE
Q 011836 49 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 128 (476)
Q Consensus 49 ~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~li 128 (476)
+++|++|+|||||+++|+..... ..+...++|.+.........++.+.++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------------IVEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------------eecCCCCceeCceeEEEEECCeEEEEE
Confidence 58999999999999999532110 001124566666666677778999999
Q ss_pred eCCCCcChHH--------HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 129 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 129 DtPGh~~~~~--------~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
||||+.++.. .....+..+|++++|+|+..+.. ....+.+..++..+.| +++++||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988543 44556789999999999987642 3455666777778888 8999999999432
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... ...+..+++. +++++|+++|.|+.++
T Consensus 121 ~~~---------~~~~~~~~~~-----~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 121 EDE---------AAEFYSLGFG-----EPIPISAEHGRGIGDL 149 (157)
T ss_pred HHH---------HHHHHhcCCC-----CeEEEecccCCCHHHH
Confidence 111 1123334432 6899999999999885
No 102
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=3e-17 Score=149.26 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|++|+|||||+++|+..... . ......|.|.+......
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~-- 62 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGRTQLINFFEV-- 62 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCcceEEEEEEe--
Confidence 3455689999999999999999999632100 0 00012345555443322
Q ss_pred CCeEEEEEeCCCCc----------ChHHHHHHhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011836 121 ETTRFTILDAPGHK----------SYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~----------~~~~~~~~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 187 (476)
+ ..+.|+||||+. +|...+...+ ..+|++++|+|+..+.. .+..+.+..+...+.| ++
T Consensus 63 ~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 63 N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EE
Confidence 2 479999999963 2333222333 35789999999988643 4566667777778888 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccc
Q 011836 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 241 (476)
Q Consensus 188 vviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~ 241 (476)
+++||+|+.. ....+...+++++.++..+. +.+++++||++|+|++
T Consensus 134 iv~nK~D~~~----~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADKLK----KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECcccCC----HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 9999999832 34455667777777776542 3589999999999974
No 103
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=5.3e-17 Score=161.90 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+.....+. ....+.|.+.....+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv------------------------------s~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV------------------------------TPKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeec------------------------------cCCCCCccCcEEEEEEeCC
Confidence 4567999999999999999999963211100 0123445554445566788
Q ss_pred eEEEEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.|+||||..+ +.+....++..+|++|+|+|+..+.. ......+..+...+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 8999999999743 22233345779999999999887531 3344556666777888 578999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+... ... .+...+...+ ....++|+||++|.|++++.
T Consensus 172 l~~~-----~~~----~~~~~l~~~~----~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 172 IESK-----YLN----DIKAFLTENH----PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred Cccc-----cHH----HHHHHHHhcC----CCcEEEEEeccCccCHHHHH
Confidence 8321 122 2333333322 13479999999999998853
No 104
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.5e-17 Score=170.48 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=108.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|+.....+ .+...|+|.+.......+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999996322111 011357787777778888999999
Q ss_pred EEeCCCC--------cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 127 ILDAPGH--------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 127 liDtPGh--------~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
++||||+ ..+...+..++..+|++++|+|+..+.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 3455666777899999999999998853 4566777888888888 8999999998433
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ... .+..+|+. +++++||.+|.|+.++
T Consensus 123 ~~-------~~~----~~~~lg~~-----~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 123 DA-------VAA----EFYSLGFG-----EPIPISAEHGRGIGDL 151 (429)
T ss_pred cc-------cHH----HHHhcCCC-----CeEEEeCCcCCChHHH
Confidence 21 011 13455553 6899999999999885
No 105
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=3.1e-17 Score=146.88 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=98.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|++|+|||||+++|+. +.... +.......+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS--GTFSE-----------------------------RQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCcc-----------------------------cCCCccceEEEEEEEEECCEE
Confidence 58999999999999999999842 22111 0011122223333344444
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...++.+|++++|+|+.+... |. .....+..+.. .++| +++|+||+|+....
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999998888888899999999999988642 11 22223333332 3567 88999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+ ...+....+.+..+. ..++++||++|.|+.++
T Consensus 125 --~----~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 125 --E----VLFEEACTLAEKNGM-----LAVLETSAKESQNVEEA 157 (165)
T ss_pred --c----cCHHHHHHHHHHcCC-----cEEEEEECCCCCCHHHH
Confidence 1 111223334444432 36899999999999885
No 106
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.73 E-value=2.8e-17 Score=131.68 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=82.5
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccce
Q 011836 272 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 272 ~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 349 (476)
++||||+|+++| ++.|++++|+|.+|.|++||+++++|++..++|++|++++.++++|.|||.|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 579999999999 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCC
Q 011836 350 GFVLSSVAK 358 (476)
Q Consensus 350 G~vl~~~~~ 358 (476)
||+|+++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999998764
No 107
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=3.6e-17 Score=170.61 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=110.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|+..... ......|+|.+.....+..++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~------------------------------~~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS------------------------------VVDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCccCCcceEEEEECCE
Confidence 4689999999999999999999632110 0112356777776667778888
Q ss_pred EEEEEeCCCCc---------ChHHHH--HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 124 RFTILDAPGHK---------SYVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~---------~~~~~~--~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
.+.|+||||.. .|...+ ..++..+|++|+|+|+.++.. .+..+.+..+...++| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999999953 222222 335679999999999998853 3556667777778888 9999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|+... +.......++...+.... ..+++++||++|.|+.++++
T Consensus 332 ~Dl~~~----~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVDE----DRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCCh----hHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 999431 222334444444444332 35899999999999998754
No 108
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.2e-16 Score=166.73 Aligned_cols=147 Identities=23% Similarity=0.258 Sum_probs=106.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|.+|+|||||+++|+..... ......|+|.+.....+.+.+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~------------------------------~v~~~~gvT~d~~~~~~~~~~~ 86 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA------------------------------VVEDVPGVTRDRVSYDAEWNGR 86 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc------------------------------cccCCCCCCEeeEEEEEEECCc
Confidence 3478999999999999999999632111 0112467888877777888899
Q ss_pred EEEEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 124 RFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.|+||||+.. |...+..++..+|++|+|+|+..+.. ....+.+..+...++| +|+|+||+|+
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 999999999763 34445567889999999999998853 2345566677777888 9999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.... . + .. .+..+|+. ..+++||++|.|+.++.
T Consensus 159 ~~~~--~----~----~~-~~~~~g~~-----~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 159 ERGE--A----D----AA-ALWSLGLG-----EPHPVSALHGRGVGDLL 191 (472)
T ss_pred Cccc--h----h----hH-HHHhcCCC-----CeEEEEcCCCCCcHHHH
Confidence 4321 1 1 11 12234543 34799999999999863
No 109
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.71 E-value=9e-17 Score=126.18 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.0
Q ss_pred CceEEEEEEEccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 274 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 274 ~~~~~i~~~~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
||+|+|+++|+..|++++|+|.+|++++||+++++|++..++|++|++++.++++|.|||.|+++|++++..++++||+|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 78999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 011836 354 SS 355 (476)
Q Consensus 354 ~~ 355 (476)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 110
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=8.3e-17 Score=142.61 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=96.1
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEEEe
Q 011836 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 129 (476)
Q Consensus 50 ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liD 129 (476)
++|++|+|||||+++|..... ......++|++.....+++.+..+.|+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999942110 0011356777776667778888999999
Q ss_pred CCCCcChHHH------HHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 130 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 130 tPGh~~~~~~------~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
|||+.+|... +...+ ..+|++++|+|+... .+....+..+...++| +++++||+|+.+...
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~- 118 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ERNLYLTLQLLELGLP-VVVALNMIDEAEKRG- 118 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hhHHHHHHHHHHcCCC-EEEEEehhhhccccc-
Confidence 9999877532 23333 489999999999864 2333444556667888 899999999954321
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. .....+...++ .+++++|+.+|.|+.++
T Consensus 119 ---~~---~~~~~~~~~~~------~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 119 ---IK---IDLDKLSELLG------VPVVPTSARKGEGIDEL 148 (158)
T ss_pred ---ch---hhHHHHHHhhC------CCeEEEEccCCCCHHHH
Confidence 11 11222333333 47999999999999885
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=8e-17 Score=145.54 Aligned_cols=150 Identities=21% Similarity=0.258 Sum_probs=97.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++++|||||+++|... .+. . ...|+......+..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------------------------~----~~~t~g~~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DID----------------------------T----ISPTLGFQIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------------------------C----cCCccccceEEEEECCE
Confidence 3478999999999999999998531 000 0 00122222233445678
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||||+..|...+...+..+|++++|+|+.+... | ......+..+ ...++| +++++||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 89999999999988877788899999999999987621 1 1122222222 224666 89999999985432
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. .+++...++..... ...++++++||++|.|+.++
T Consensus 132 -~-------~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 132 -S-------EEEIREALELDKIS-SHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred -C-------HHHHHHHhCccccC-CCceEEEeccCCCCcCHHHH
Confidence 1 12233333222111 12568999999999999885
No 112
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=3.2e-16 Score=153.89 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=99.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+...|+++|++|+|||||+|+|+...-.+. .. ..+.|.+.....+..++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~v------------------------s~------~~~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIV------------------------SP------KPQTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeec------------------------CC------CCCcccccEEEEEEcCC
Confidence 3457899999999999999999963221110 00 11222222222233456
Q ss_pred eEEEEEeCCCCcCh--------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~--------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.|+||||..+. ...+..++..+|++++|+|+..+.. ....+.+..+...+.| +++|+||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 89999999996543 3344556789999999999998532 3445566666666778 889999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.. +.+...+..+.+ ....+ ..+++|+||++|.|+.++.
T Consensus 125 l~~---~~~~l~~~~~~l---~~~~~-----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 125 LVK---DKEELLPLLEEL---SELMD-----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred CCC---CHHHHHHHHHHH---HhhCC-----CCeEEEecCCCCCCHHHHH
Confidence 942 122233333322 22223 3479999999999998853
No 113
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=3.2e-16 Score=139.91 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=96.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++++|||||+++++. +..... .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM--DGYEPQ---------------------------QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC---------------------------cCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999853 211100 00011222222222233344678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCchHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.|+||||+..|...+...++.+|++|+|+|+.+... + ....+.+..+... ++| +++++||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y---KNLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 999999999999888888999999999999987642 1 1223334444433 577 8999999998211
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. ..+...+.... .++++++||++|.|+.++.
T Consensus 120 ~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 120 V----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred H----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 1 11122233332 3579999999999999863
No 114
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=2.4e-16 Score=140.60 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=94.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.+|+|||||+++++... +... ..+ ..+... .....+......
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~~ 51 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTD------------------------YDP---TIEDSY-TKQCEIDGQWAI 51 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------cCC---CccceE-EEEEEECCEEEE
Confidence 4799999999999999999996421 1100 000 000000 111112222357
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCc
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~ 200 (476)
+.++||||+.+|...+...+..+|++++|+|+.+... |. .....+..+.. .++| +++++||+|+....
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~- 123 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQR- 123 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCccccccc-
Confidence 8899999999999888888999999999999987531 11 12222222222 3667 89999999984321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...++...+++..+ ++++++||++|.|+.++
T Consensus 124 -~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 124 -K----VSREEGQELARKLK------IPYIETSAKDRLNVDKA 155 (164)
T ss_pred -e----ecHHHHHHHHHHcC------CcEEEeeCCCCCCHHHH
Confidence 0 01122333444433 47999999999999985
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=2.4e-16 Score=140.39 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=94.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+++|||||+++|........ ....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~--------------------------------~~~~t~g~~~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ--------------------------------IIVPTVGFNVESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc--------------------------------eecCccccceEEEEECCEEEE
Confidence 589999999999999999843110000 001111122223456788999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH------HcCCceEEEEEeeccCCCCCc
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~------~~~ip~~ivviNK~D~~~~~~ 200 (476)
++||||+.+|...+...+..+|++|+|+|+.+... + ......+..+. ..++| +++++||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999999888888999999999999987531 1 11222222221 13577 89999999985432
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. +++ ...+....+. ...++++++||++|.|++++
T Consensus 121 ~~---~~~----~~~l~~~~~~-~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 121 TA---VKI----TQLLGLENIK-DKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CH---HHH----HHHhCCcccc-CceEEEEEeeCCCCCchHHH
Confidence 11 111 1111110000 12357899999999999985
No 116
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.69 E-value=2.2e-16 Score=124.35 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=77.8
Q ss_pred CceEEEEEEEcc-CCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeE
Q 011836 274 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 274 ~~~~~i~~~~~~-~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 352 (476)
||+|+|+++|+. .|++++|+|.+|++++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 789999999932 8999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred Eec
Q 011836 353 LSS 355 (476)
Q Consensus 353 l~~ 355 (476)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=1.5e-16 Score=141.40 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=94.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++++|||||+++|.. +... +. ..|+......++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~-------------------------~~-------~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVV-------------------------TT-------IPTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCc-------------------------Cc-------CCccCcCeEEEEECCEEEE
Confidence 589999999999999999842 1110 00 0122222233455678999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~-~~~~---~~ip~~ivviNK~D~~~~~~~~ 202 (476)
|+||||+.+|...+...+..+|++|+|+|+.+... + ....+.+. .+.. .+.| +++++||+|+.+.. ..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~~ 118 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-SE 118 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-CH
Confidence 99999999998888888899999999999987421 1 11223332 2221 3567 89999999985432 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.++.. .+....+. ....+++++||++|.|+.++
T Consensus 119 ---~~i~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 151 (158)
T cd04151 119 ---AEISE----KLGLSELK-DRTWSIFKTSAIKGEGLDEG 151 (158)
T ss_pred ---HHHHH----HhCccccC-CCcEEEEEeeccCCCCHHHH
Confidence 12222 22111111 12457999999999999985
No 118
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=4.5e-16 Score=139.79 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=91.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe-EE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 125 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~~ 125 (476)
+|+++|++|+|||||+++|......+. ...+.|+......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 699999999999999999952111000 0122344333334455565 89
Q ss_pred EEEeCCCCc-------ChHHHHHHhhhhcCEEEEEEECCCC-ccccccCCCCchHHHHHHHHH-----cCCceEEEEEee
Q 011836 126 TILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 192 (476)
Q Consensus 126 ~liDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~~g-~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK 192 (476)
.|+||||+. .+...+.+.+..+|++++|+|+... .. + .+.......+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---V---EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---H---HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999963 2344555666789999999999876 21 0 122222233332 2566 8899999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+|+.... .. ...+..++... ...+++++||+++.|+.++
T Consensus 124 ~Dl~~~~----~~---~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 124 IDLLDEE----EL---FELLKELLKEL-----WGKPVFPISALTGEGLDEL 162 (170)
T ss_pred hhcCCch----hh---HHHHHHHHhhC-----CCCCEEEEecCCCCCHHHH
Confidence 9984321 11 12222333322 1357999999999999885
No 119
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=5.4e-16 Score=160.83 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=104.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+.....+ + ....|+|.+.......+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------------------v------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------------------V------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------e------CCCCCCcccceEEEEEECCcEE
Confidence 579999999999999999995321110 0 1135677777777778888999
Q ss_pred EEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 126 TILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 126 ~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
.++||||+.+ +......++..+|++|+|+|+..+.. ....+....++..+.| +++|+||+|+..
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 33334566789999999999998742 3445566777778888 899999999732
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +. .+.. +..+|+. .++++||++|.|+.++
T Consensus 124 ~---~~-------~~~~-~~~lg~~-----~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 124 E---EA-------DAYE-FYSLGLG-----EPYPISAEHGRGIGDL 153 (435)
T ss_pred c---hh-------hHHH-HHhcCCC-----CCEEEEeeCCCCHHHH
Confidence 1 11 1111 1244543 4799999999999885
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=9.6e-16 Score=167.28 Aligned_cols=164 Identities=23% Similarity=0.257 Sum_probs=116.3
Q ss_pred cccccchhhh-ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhh
Q 011836 27 SAVEDAESQQ-ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 105 (476)
Q Consensus 27 ~~~~~~~~~~-~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~ 105 (476)
+....+++.. ..........+|+++|++|+|||||+++|+.....+ .+.
T Consensus 256 ~~~~~a~~~~~~~~~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~ 305 (712)
T PRK09518 256 DLLEGSGFVAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VED 305 (712)
T ss_pred HHhhCCCcccCccccccccCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecC
Confidence 3444444444 334455667899999999999999999996321111 112
Q ss_pred hcccEEEeeeEEEEeCCeEEEEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH
Q 011836 106 IKGKTVEVGRAHFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 106 ~~g~ti~~~~~~~~~~~~~~~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
..|+|.+......++.+..+.++||||... |...+..++..+|++|+|+|+..+.. ....+.+..
T Consensus 306 ~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~ 378 (712)
T PRK09518 306 TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRM 378 (712)
T ss_pred CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHH
Confidence 467888887777888899999999999653 45566677899999999999998753 344556677
Q ss_pred HHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 178 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 178 ~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
++..+.| +|+|+||+|+... .. .... +..+|+. ..+|+||++|.|+.++.
T Consensus 379 Lr~~~~p-vIlV~NK~D~~~~---~~-------~~~~-~~~lg~~-----~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 379 LRRAGKP-VVLAVNKIDDQAS---EY-------DAAE-FWKLGLG-----EPYPISAMHGRGVGDLL 428 (712)
T ss_pred HHhcCCC-EEEEEECcccccc---hh-------hHHH-HHHcCCC-----CeEEEECCCCCCchHHH
Confidence 7788888 8999999998321 10 1111 2234543 35799999999999863
No 121
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=2.1e-16 Score=140.75 Aligned_cols=148 Identities=21% Similarity=0.249 Sum_probs=96.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE--EEEeCCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA--HFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~--~~~~~~~ 123 (476)
.+|+++|++++|||||+++|+... ... +.....+.+.... .+.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK--FKE-----------------------------DSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCceeeeEEEEEEEECCEEE
Confidence 479999999999999999995321 110 0011122222222 2222336
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH---HcCCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~---~~~ip~~ivviNK~D~~~~~~ 200 (476)
.+.|+|+||+.+|.......++.+|++++|+|+.+... |. +....+..+. ..++| +++++||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---FE---ALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 78999999999998888888899999999999998642 11 2222333332 23667 89999999984211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...++...+++..+ ++++++||++|.|+.++
T Consensus 122 -~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 122 -E----VTFLEASRFAQENG------LLFLETSALTGENVEEA 153 (161)
T ss_pred -c----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 0 11222333444443 47999999999999985
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=3.5e-16 Score=140.74 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=95.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++++|||||+++|.. +... ......|.++ ..+...+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~--~~~~----------------------------~~~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL--GQSV----------------------------TTIPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc--CCCc----------------------------cccCCcccce----EEEEECCE
Confidence 458999999999999999999842 1110 0000112222 23445678
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||||+.+|...+...++.+|++|+|+|+.+... | ....+.+... . ..++| ++++.||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 99999999999998887778899999999999987521 1 1223333222 2 13566 9999999998432
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... +++...+...... ...++++++||++|.|+.++
T Consensus 126 ~~~-------~~i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 126 MKP-------HEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred CCH-------HHHHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 111 2222232111111 12357899999999999875
No 123
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=6.3e-16 Score=137.84 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=97.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|++++|||||+++|+... ... ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE--FSE---------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999995321 100 001122322322233344445678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++|+||+.+|.......++.+|++++|+|+.+... | .+....+..+... ++| +++++||+|+.....
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 999999999998887778889999999999987531 1 1334444444443 355 899999999842211
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+.+..+....+ ++++++||++|.|+.++
T Consensus 124 ----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 124 ----VSTEEAQEYADENG------LLFFETSAKTGENVNEL 154 (163)
T ss_pred ----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 01122333344433 47999999999999985
No 124
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=2.8e-16 Score=143.37 Aligned_cols=159 Identities=20% Similarity=0.246 Sum_probs=95.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE-EeCCe
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETETT 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~-~~~~~ 123 (476)
.++|+++|++|+|||||++++++... . .. ....|.+........ .....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~-------------------------~~---~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--V-------------------------NT---VPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--C-------------------------Cc---CCccccceeEEEeeccCCCce
Confidence 47899999999999999999953211 0 00 001122221111111 22457
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCC-CchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG-GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~-~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.+.++||||++.|...+...+..+|++|+|+|+.+... +... ....+........+.| +++++||+|+... ...
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~~~ 127 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA-LSV 127 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc-CCH
Confidence 89999999999998877777889999999999987521 1000 0111122222335677 8999999998422 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+. +..++....+.....++++++||++|.|+.+++.
T Consensus 128 ~~-------~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 128 SE-------VEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HH-------HHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 11 2222211111101235789999999999998644
No 125
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=3.9e-16 Score=170.37 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=109.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|+...-.+. ....|.|.+.....+.+++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCC
Confidence 458999999999999999999964221100 11356777766666778888
Q ss_pred EEEEEeCCCCc---------ChHHH--HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 124 RFTILDAPGHK---------SYVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~---------~~~~~--~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
.+.|+||||+. +|... ...++..+|++++|+|+..+.. .+....+..+...+.| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999963 23222 2345678999999999998853 4666677777778888 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|+.. .+..+.+.+.+...+.... ..+++++||++|.|+.++.+
T Consensus 571 ~DL~~----~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMD----EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCC----hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 2223333344443333222 35789999999999998754
No 126
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=3.9e-16 Score=133.57 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|.++|.++||||||+.+|... +.....|..+.+ .=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~-----------------------------------~~~~~KTq~i~~--------~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE-----------------------------------EIRYKKTQAIEY--------YD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC-----------------------------------CCCcCccceeEe--------cc
Confidence 57999999999999999999321 111112222211 11
Q ss_pred EEEeCCC----CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPG----h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
.+||||| +..|...++..+..||.+++|.||.+.. ...--.++..++.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCcc---c
Confidence 5699999 7778888888889999999999999863 11112345566777 999999999942 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+..+ ..+++|+..|+. .++++|+.+|+|++++
T Consensus 105 ~~~i~----~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DANIE----RAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhHH----HHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 23333 444577777876 5799999999999984
No 127
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=7.6e-16 Score=167.46 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=104.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+|+|..... ......|+|++.....+.++++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-------------------------------~vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCceEeeEEEEEEcCce
Confidence 347899999999999999999942110 1112478899888888888999
Q ss_pred EEEEEeCCCCcChHH--------HHH--Hhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 124 RFTILDAPGHKSYVP--------NMI--SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~~~~--------~~~--~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
.++++||||+.+|.. +.+ ..+ ..+|++++|+|+.+.. +.......+..+++| +++++|
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlN 120 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALN 120 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEE
Confidence 999999999987742 111 111 3789999999998752 334455667778999 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+|+.+.. .+.. .+..+-+.+| ++++|+|+.+|.|++++.
T Consensus 121 K~Dl~~~~----~i~i---d~~~L~~~LG------~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 121 MLDIAEKQ----NIRI---DIDALSARLG------CPVIPLVSTRGRGIEALK 160 (772)
T ss_pred chhhhhcc----CcHH---HHHHHHHHhC------CCEEEEEeecCCCHHHHH
Confidence 99984221 1112 2222333443 479999999999998853
No 128
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=4.6e-16 Score=140.79 Aligned_cols=150 Identities=22% Similarity=0.272 Sum_probs=97.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+. +.... ...|+......+...+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~~ 59 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVH--------------------------------TSPTIGSNVEEIVYKNI 59 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCCC--------------------------------cCCccccceEEEEECCe
Confidence 357899999999999999999942 21100 11222233344566788
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||||+..|...+...+..+|++++|+|+++... + ....+.+ .++.. .++| +++++||+|+.+.
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~- 131 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA- 131 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-
Confidence 99999999999998888888899999999999987531 1 1122222 22222 2466 8999999998532
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+. +++.+. +.....+ ...++++++||++|.|+.++
T Consensus 132 ~~~---~~i~~~----l~~~~~~-~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 132 MTP---AEISES----LGLTSIR-DHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred CCH---HHHHHH----hCccccc-CCceEEEecccCCCCCHHHH
Confidence 111 122222 2110011 12457999999999999885
No 129
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=6.9e-16 Score=140.55 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|..++|||||+.+|.. +.... ...|+......++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~--------------------------------~~pt~g~~~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT--------------------------------TIPTIGFNVETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc--------------------------------ccCCcceeEEEEEECC
Confidence 4458999999999999999999842 21100 0112222223456678
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 198 (476)
..+.++|+||+..|...+...++.+|++|+|+|+.+... + ...++.+.... ..++| ++|++||+|++..
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999998888888899999999999987521 1 12222222221 12566 9999999998543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. . . +++...+.-..+. ...+.++++||++|+|+.+.+
T Consensus 134 ~-~---~----~~~~~~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 134 M-N---A----AEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred C-C---H----HHHHHHhCccccC-CCceEEEeccCCCCCCHHHHH
Confidence 1 1 1 2222222111111 113457799999999999853
No 130
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=4.2e-16 Score=138.72 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=98.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--eE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|++++|||||+++|+...- ..+...+.+.+.....+..++ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-------------------------------DNQYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-------------------------------CccCCCceeeeEEEEEEEECCEEEE
Confidence 799999999999999999953211 111233445554444444444 56
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcC--CceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLG--VTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~~~~--ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+.+|...+...+..+|++++|+|+++... |. .....+..+ ...+ +| +++++||+|+... .
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~--~ 121 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---FD---NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDK--R 121 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE-EEEEEEChhcccc--C
Confidence 8999999999998888888899999999999987532 11 222333322 2333 66 9999999998321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ..++.....+.. +++++++||++|.|+.++
T Consensus 122 ~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 122 QV----STEEGEKKAKEL------NAMFIETSAKAGHNVKEL 153 (161)
T ss_pred cc----CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHH
Confidence 11 112222233333 357999999999999885
No 131
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=2.8e-16 Score=141.46 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=95.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+++|... ... ....|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~--------------------------------~~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFM--------------------------------QPIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------CcCCcCceeEEEEEECCEEEE
Confidence 5889999999999999998531 110 011222222234556788999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+.. .+.| +++++||+|+.+. .+.
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH
Confidence 99999999998888888899999999999987421 1 122333322221 1355 9999999998432 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+++..++...++.....+.++++||++|.|+.+++
T Consensus 119 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 119 -------EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred -------HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 22222222111100113578899999999999863
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=8.6e-16 Score=137.75 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+..... .....+.|.......+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 47999999999999999999532110 00112334444444455567899
Q ss_pred EEEeCCCCcCh-------H-HHHHHhh-hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeecc
Q 011836 126 TILDAPGHKSY-------V-PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 194 (476)
Q Consensus 126 ~liDtPGh~~~-------~-~~~~~~~-~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D 194 (476)
+|+||||+.+. + ...+..+ ..+|++|+|+|+..... +.. ....+.+..+... +.| +|+++||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998421 1 1222222 34699999999987521 100 1122333444433 677 999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+... ....+ ...+.+. ...+++++||++|.|+.++.
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHH
Confidence 8432 12222 2222221 14579999999999999853
No 133
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=7.6e-16 Score=137.02 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=88.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|. |... ..+ .|... .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~---~~~~-----------------------------~~~---~~~~v-----~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ---GNYT-----------------------------LAR---KTQAV-----EFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc---CCCc-----------------------------cCc---cceEE-----EECCC--C
Confidence 79999999999999999983 2100 000 11111 11111 2
Q ss_pred EEeCCCC----cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh----~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+|||||. .++...+..++..+|++++|+|++++.. ......+.. ..+.| +++++||+|++..+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 6999995 5677777888899999999999998742 122222221 23566 88999999984322
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. ..+..+++..++. .+++++||++|.|+.++.
T Consensus 108 --~----~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 --V----AATRKLLLETGFE----EPIFELNSHDPQSVQQLV 139 (158)
T ss_pred --H----HHHHHHHHHcCCC----CCEEEEECCCccCHHHHH
Confidence 1 2234455555542 489999999999999853
No 134
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=1.1e-15 Score=135.69 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++|+. +...... . + ..+... .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~--~~~~~~~----------------------~--~---t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ--NHFVDEY----------------------D--P---TIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCcCCc----------------------C--C---cchheE-EEEEEECCEEEEE
Confidence 5799999999999999999963 2111000 0 0 001111 1111122223567
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~ 201 (476)
.++||||+++|...+...+..+|++++|+|..+... |+ .....+..+. ..+.| +++++||+|+......
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~ 124 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS 124 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec
Confidence 899999999999888888999999999999886421 11 1122222222 23567 8999999998432111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+...+.+..+ ++++++||++|.|+.++
T Consensus 125 -------~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 125 -------SRQGQDLAKSYG------IPYIETSAKTRQGVEEA 153 (162)
T ss_pred -------HHHHHHHHHHhC------CeEEEecCCCCCCHHHH
Confidence 122333334333 47999999999999985
No 135
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=5.6e-16 Score=138.16 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=95.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|++|+|||||+++|+.. ... ....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG--KFS-----------------------------EQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 47999999999999999999521 110 01112233333333344444 5
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC-C
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~-~ 199 (476)
.+.++|+||+..|.......+..+|++++|+|+.+... ++ .....+..+.. .++| +++++||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 78999999999999888888899999999999987532 11 11112222222 3566 9999999998431 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... +....+.+..+ ++++++|+.+|.|+.++
T Consensus 123 ~~~-------~~~~~~~~~~~------~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 123 VSR-------EEAEAFAEEHG------LPFFETSAKTNTNVEEA 153 (164)
T ss_pred CCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHH
Confidence 111 12223344433 47999999999999985
No 136
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=7.1e-16 Score=138.46 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=95.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.+|+|||||++++.. +.+.... ....|.+.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~--~~f~~~~---------------------------~~t~~~~~~~~~~~~~~~~~~ 53 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE--DSFNPSF---------------------------ISTIGIDFKIRTIELDGKKIK 53 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh--CcCCccc---------------------------ccCccceEEEEEEEECCEEEE
Confidence 47999999999999999999952 2111100 001122222222222223357
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+.+|.......+..+|++|+|+|+.+... |. ...+.+..+.. .+.| ++++.||+|+....
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~-- 124 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR-- 124 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 8999999999998887778899999999999987532 21 22333333332 3466 88999999995321
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ..++...+++.. ..+++++||++|.|+.++
T Consensus 125 ~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 125 VV----SKEEGEALADEY------GIKFLETSAKANINVEEA 156 (167)
T ss_pred CC----CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 10 112222333333 247999999999999986
No 137
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1.7e-15 Score=133.75 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=95.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|++|+|||||+++|+...... .....+.|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------------VSDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------------ccCCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999995321100 00124556665556667778899
Q ss_pred EEEeCCCCcChHH--------HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccCC
Q 011836 126 TILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~~~~--------~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~ 196 (476)
+++||||+.++.. .+...+..+|++++|+|+.... +........ ..+.| +++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL----------DEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------CHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 9999999877643 2345667999999999999752 333333333 34566 99999999994
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .. ... ....+++++||+++.|+.++
T Consensus 121 ~~~----~~---------~~~------~~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 121 PDS----EL---------LSL------LAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred Ccc----cc---------ccc------cCCCceEEEECCCCCCHHHH
Confidence 321 00 111 12458999999999999885
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=5.6e-16 Score=135.12 Aligned_cols=131 Identities=22% Similarity=0.255 Sum_probs=84.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|+... . ....|+. .++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~--~---------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE--I---------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc--c---------------------------------cccccee-----EEEcC---e
Confidence 79999999999999999984210 0 0011221 11222 6
Q ss_pred EEeCCCCc----ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~----~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++||||+. .+...+...++.+|++|+|+|+.++.. .+..+.+ ...+.| +++++||+|+.+..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~~---~~~~~p-~ilv~NK~Dl~~~~--- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGFA---SIFVKP-VIGLVTKIDLAEAD--- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhHH---HhccCC-eEEEEEeeccCCcc---
Confidence 89999973 445555556789999999999988753 1222222 223446 88899999984311
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ..+....+++..++ .+++++||++|.|+.++
T Consensus 105 ~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 105 V----DIERAKELLETAGA-----EPIFEISSVDEQGLEAL 136 (142)
T ss_pred c----CHHHHHHHHHHcCC-----CcEEEEecCCCCCHHHH
Confidence 1 11233344444443 27899999999999874
No 139
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=132.64 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=116.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|++.|..++||||++.++.+.......... + . + .....|..|+...+.....
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~------------~-----~--~--s~k~kr~tTva~D~g~~~~ 64 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA------------S-----S--V--SGKGKRPTTVAMDFGSIEL 64 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccc------------c-----c--c--ccccccceeEeecccceEE
Confidence 3455689999999999999999999754432221100 0 0 0 0001455788888877777
Q ss_pred CC-eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEeeccCCCC
Q 011836 121 ET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHTV 198 (476)
Q Consensus 121 ~~-~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~-ip~~ivviNK~D~~~~ 198 (476)
.+ +.++|+|||||.+|-.++.-.++.++++|++||++.+.. ...++.+.++.... +| ++|++||.|++++
T Consensus 65 ~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 65 DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred cCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 66 899999999999999999999999999999999998742 23366667777777 66 9999999999766
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+.+.+++. ++... ..+++|+++|..+++..+.
T Consensus 137 -~ppe~i~e~-------l~~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 137 -LPPEKIREA-------LKLEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred -CCHHHHHHH-------HHhcc----CCCceeeeecccchhHHHH
Confidence 455443333 32221 1568999999999887763
No 140
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=5.5e-16 Score=139.36 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.+|+|||||+++++.. ..... .....|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------------------HDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCCC---------------------------CCCccceeEEEEEEEECCEEEE
Confidence 479999999999999999998531 11000 0011233333222223333457
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+++|.......+..+|++|+|+|+++... |. ....++..+.. -++| ++++.||+|+....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~-- 125 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRR-- 125 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 8999999999988888888899999999999986532 21 22223333333 2566 89999999984211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...++...++...+ ++++++||++|.|+.++
T Consensus 126 ~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 126 E----VSYEEGEAFAKEHG------LIFMETSAKTASNVEEA 157 (168)
T ss_pred C----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 0 11122333444433 47999999999999985
No 141
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=9.1e-16 Score=136.60 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=95.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++|+... ... ......+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDT--FDP---------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CCc---------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999995321 100 011122333332222233334678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 201 (476)
.|+||||+.+|.......++.+|++++|+|+.+... |+ ....++..+.. .+.| +++++||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 999999999998877778889999999999987532 11 12222232322 3566 8899999999522212
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ++...+.+.. .++++++|+++|.|+.++
T Consensus 125 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 125 R-------EEGLKFARKH------NMLFIETSAKTRDGVQQA 153 (161)
T ss_pred H-------HHHHHHHHHc------CCEEEEEecCCCCCHHHH
Confidence 1 1222333333 357999999999999985
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=2e-15 Score=132.66 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|++|+|||||+++|+... . ..+..++++.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK--F-----------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--C-----------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999995321 0 112234566666555556666 7
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.+.++|+||+.+|..........++.++.++|....+.................+. .+.| +++++||+|+...+
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~---- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVP-IILVGNKIDLRDAK---- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCc-EEEEEEcccCCcch----
Confidence 88999999999996665555566666666666554321100000011222222222 2677 89999999994321
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
........+...+. .+++++||.+|.|+.++
T Consensus 125 ----~~~~~~~~~~~~~~-----~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG-----EPIIPLSAETGKNIDSA 155 (161)
T ss_pred ----hhHHHHHHHhhccC-----CceEEeecCCCCCHHHH
Confidence 33444445555543 36999999999999874
No 143
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=6.6e-16 Score=138.45 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=95.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|+.++|||||+++|.. +.+.... ....|.........+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~--~~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE--KKFMADC---------------------------PHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCCC---------------------------CcccceeEEEEEEEECCEEEEE
Confidence 6899999999999999999852 2211100 0011222222222222234578
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++||||+..|...+...++.+|++|+|+|+.+... |+ ...+.+...... +.| ++++.||+|+.... +
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~--~ 124 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR--D 124 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--C
Confidence 999999999998888888899999999999987532 11 222333333222 345 89999999984321 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...++...+++.. .++++++||++|.|+.++
T Consensus 125 ----~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 125 ----VTYEEAKQFADEN------GLLFLECSAKTGENVEDA 155 (166)
T ss_pred ----cCHHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 0112233334433 348999999999999985
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=1.6e-15 Score=140.41 Aligned_cols=154 Identities=22% Similarity=0.286 Sum_probs=92.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|.+|+|||||+++|.... . .....+|.|.+... +...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~--~-----------------------------~~~~~~~~t~~~~~--~~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK--V-----------------------------RVGKRPGVTRKPNH--YDWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--C-----------------------------ccCCCCceeeCceE--Eeec--
Confidence 45799999999999999999994211 0 11123466665433 2333
Q ss_pred EEEEEeCCCC-----------cChHHHHH----HhhhhcCEEEEEEECCCCcc-ccccC---CCCchHHHHHHHHHcCCc
Q 011836 124 RFTILDAPGH-----------KSYVPNMI----SGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 124 ~~~liDtPGh-----------~~~~~~~~----~~~~~~D~~ilVvda~~g~~-e~~~~---~~~qt~e~l~~~~~~~ip 184 (476)
.++++||||+ +.|...+. .++..+|++++|+|+....- ...+. ...++.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 33333222 23456789999999865310 00000 012345566777778898
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc---cCCeeEEEeecccCcccccc
Q 011836 185 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~~i~~~ 243 (476)
+++|+||+|+... .. +..+++.. .++... ....+++++||++| |+.++
T Consensus 133 -~iiv~NK~Dl~~~--~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 133 -PIVAVNKMDKIKN--RD----EVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred -eEEEEECccccCc--HH----HHHHHHHH---HhcCCccccccCCcEEEEecccC-CHHHH
Confidence 8899999998432 11 12222222 223210 00136899999999 99985
No 145
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=8.6e-16 Score=136.63 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=92.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CCeEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 125 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 125 (476)
+|+++|.+|+|||||+++|... .... . ....|.++ ..... ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~--~~~~-------------------------~---~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA--ELVT-------------------------T---IPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC--Cccc-------------------------c---cCccCcce----EEEEeCCceEE
Confidence 4899999999999999999531 1100 0 00112211 12222 34789
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D~~~~~~~ 201 (476)
.++||||+..|...+...+..+|++|+|+|+.+... + ......+... . ..+.| +++++||+|++... .
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGAL-T 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccCc-C
Confidence 999999999998888888899999999999987531 1 1222222222 1 14677 99999999984321 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++.. .+....+....+++++++||++|.|+.++
T Consensus 119 ---~~~i~~----~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 119 ---AEEITR----RFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred ---HHHHHH----HcCCcccCCCCcEEEEecccccCCChHHH
Confidence 112222 22111111112467999999999999985
No 146
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=6.8e-16 Score=138.26 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=96.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|.+|+|||||+++|+. +.... ......+.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD--DTYTE-----------------------------SYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCccceeEEEEEEEECCEE
Confidence 36899999999999999999952 11110 001112222222233333 3
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.++||||+.+|.......++.+|++|+|+|+.+... |. ...+.+..+.. .+.| ++++.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 578999999999998888788899999999999987531 21 23333333333 2466 89999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.-.. ++...+.+.. .++++++||++|.|+.+++
T Consensus 124 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 124 --VVDY----SEAQEFADEL------GIPFLETSAKNATNVEQAF 156 (166)
T ss_pred --CCCH----HHHHHHHHHc------CCeEEEEECCCCcCHHHHH
Confidence 1001 2222333333 3589999999999999863
No 147
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=2e-15 Score=134.48 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=94.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe----C
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----E 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----~ 121 (476)
.+|+++|.+++|||||+++|.. +.... +..+.+..+.....+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK--GIFTK-----------------------------DYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCcEEEEEEEEEEEEcCCCC
Confidence 3799999999999999999852 21110 00112222222222222 3
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEeeccCCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivviNK~D~~~~~ 199 (476)
...+.|+||||+.+|...+...++.+|++++|+|+.+... |. .....+..+. ..++| +++++||+|+....
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 4679999999999998888888999999999999987532 11 1122222222 23677 89999999983211
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . ..++...+.+.++ ++++++|+++|.|+.++
T Consensus 123 --~--v--~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 123 --V--I--TNEEAEALAKRLQ------LPLFRTSVKDDFNVTEL 154 (162)
T ss_pred --C--C--CHHHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 0 0 0122333444443 47999999999999884
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=1.4e-15 Score=135.52 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=93.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+.+|. .|.... . ..|+......++.....+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~--~~~~~~-------------------------~-------~pt~g~~~~~~~~~~~~~~ 47 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLK--LGEIVT-------------------------T-------IPTIGFNVETVEYKNISFT 47 (159)
T ss_pred EEEEECCCCCCHHHHHHHHh--cCCCcc-------------------------c-------CCCCCcceEEEEECCEEEE
Confidence 79999999999999999984 221110 0 0111111223445678899
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~~ 202 (476)
|+||||+..|...+...++.+|++|+|+|+.+... | .+..+.+..+.. .+.| +++++||+|+.+.. ..
T Consensus 48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~ 119 (159)
T cd04150 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-SA 119 (159)
T ss_pred EEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-CH
Confidence 99999999998888888899999999999986421 1 133333332221 2456 99999999984321 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+++.. .+....+. ...+.++++||++|.|+.++
T Consensus 120 ---~~i~~----~~~~~~~~-~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 120 ---AEVTD----KLGLHSLR-NRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred ---HHHHH----HhCccccC-CCCEEEEEeeCCCCCCHHHH
Confidence 12211 12110111 12456889999999999885
No 149
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=8.7e-16 Score=155.15 Aligned_cols=156 Identities=18% Similarity=0.144 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
-...|+++|.+|||||||+++|+.....+. ...+.|.......+...+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs-------------------------------~~p~TT~~p~~Giv~~~~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVA-------------------------------DYPFTTLVPNLGVVRVDDE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------CCCCCccCcEEEEEEeCCC
Confidence 345799999999999999999953221110 123456555555555654
Q ss_pred eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEE
Q 011836 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivvi 190 (476)
..++|+||||..+ ....+++.+..+|++++|||+........+ .+....+..+.. .+.| +|+|+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~---e~~~~l~~eL~~~~~~L~~kP-~IlVl 282 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPV---ENARIIINELEKYSPKLAEKP-RWLVF 282 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChH---HHHHHHHHHHHhhhhhhcCCC-EEEEE
Confidence 4699999999643 345566778899999999998721000000 122233333333 2467 78899
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
||+|+.. +..+. +.+..+.+..++ ..+++++||+++.|+.++.+
T Consensus 283 NKiDl~~----~~el~---~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 283 NKIDLLD----EEEAE---ERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred eCCccCC----hHHHH---HHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 9999842 22222 223333333332 13689999999999998644
No 150
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=6.5e-16 Score=138.42 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=95.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++|++ +...... ....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~--~~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD--DSFTSAF---------------------------VSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCCC---------------------------CCceeeEEEEEEEEECCEEEEE
Confidence 6899999999999999999953 2111000 0011222221111122233678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++||||+.+|.......++.+|++++|+|..+... |+ +..+.+..+... ..| +++++||+|+.... .
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~--~ 123 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER--V 123 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc--c
Confidence 999999999998888888999999999999886431 21 233333333332 345 89999999984321 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.. .++...+...++ ++++++||++|.|+.+++
T Consensus 124 ~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 124 VS----SERGRQLADQLG------FEFFEASAKENINVKQVF 155 (165)
T ss_pred cC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 00 112222333443 379999999999999863
No 151
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.8e-15 Score=135.86 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|.. +.+.. .....++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999842 21110 0011222233333344444
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH---HcCCceEEEEEeeccCCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~---~~~ip~~ivviNK~D~~~ 197 (476)
..+.++|+||+..|...+...+..+|++++|+|+.++.. +. .....+..+. ..++| +++++||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 567899999999999888888999999999999987532 11 1122222222 23566 789999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. + +...+...+.... ..+++++|+++|.|+.++
T Consensus 127 ~~---~----i~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 127 RR---E----VSQQRAEEFSDAQ-----DMYYLETSAKESDNVEKL 160 (169)
T ss_pred cc---c----cCHHHHHHHHHHc-----CCeEEEeeCCCCCCHHHH
Confidence 21 1 1111111222211 357999999999999885
No 152
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=1e-15 Score=136.76 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=91.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|+.. ..... ..+. .+... .....+......+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~--~~~~~------------------------~~~t---~~~~~-~~~~~~~~~~~~l~ 51 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG--HFVDD------------------------YDPT---IEDSY-RKQIEIDGEVCLLD 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--cCCcc------------------------cCCc---hhhhE-EEEEEECCEEEEEE
Confidence 7999999999999999999632 11110 0000 00000 00111222346788
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC-ch
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN-WS 201 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~-~~ 201 (476)
++||||+.+|.......+..+|++++|+|+..... |+ ........+.. .+.| +++++||+|+.... ..
T Consensus 52 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~ 124 (164)
T smart00173 52 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS 124 (164)
T ss_pred EEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc
Confidence 99999999998888888899999999999987531 11 11221222221 2566 89999999984321 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +....+.+.. ..+++++||++|.|+.++
T Consensus 125 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 125 T-------EEGKELARQW------GCPFLETSAKERVNVDEA 153 (164)
T ss_pred H-------HHHHHHHHHc------CCEEEEeecCCCCCHHHH
Confidence 1 1222333333 258999999999999986
No 153
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=1e-15 Score=138.65 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=97.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|..++|||||+.+|.. |... + ...|+......+...+.
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESV-------------------------T-------TIPTIGFNVETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------C-------cCCccccceEEEEECCE
Confidence 358999999999999999999842 2110 0 00122222223445678
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 199 (476)
.+.|+||||+..|...+...++.+|++|+|+|+++... + ....+.+..+.. .++| ++|+.||+|+.+..
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 130 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDAM 130 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCC
Confidence 99999999999999888888899999999999986421 1 133444433322 2466 89999999985331
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.+ ++.+ .+...... ...+.++++||++|.|+.+++
T Consensus 131 -~~~---~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 131 -KAA---EITE----KLGLHSIR-DRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred -CHH---HHHH----HhCccccC-CCcEEEEEeeCCCCCCHHHHH
Confidence 211 2222 11110011 124568899999999999853
No 154
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=5.9e-15 Score=132.73 Aligned_cols=150 Identities=15% Similarity=0.173 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--C
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--E 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~ 121 (476)
...+|+++|.+|+|||||+++++. +.... +....++.+.....+.. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCc-----------------------------CcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999852 21111 00111222222222333 3
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-H------HcCCceEEEEEeecc
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K------TLGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~------~~~ip~~ivviNK~D 194 (476)
...+.|+||||+.+|...+...++.+|++++|+|.++... |. ...+....+ . ..++| +++++||+|
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 125 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVVLGNKND 125 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcccccCCCCc-EEEEEECcc
Confidence 4567899999999998888888899999999999987642 11 111111111 1 12467 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+...... .+++..+++..++ .+++++||++|.|+.++
T Consensus 126 l~~~~~~-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 126 IPERQVS-------TEEAQAWCRENGD-----YPYFETSAKDATNVAAA 162 (170)
T ss_pred ccccccC-------HHHHHHHHHHCCC-----CeEEEEECCCCCCHHHH
Confidence 8422111 2234444555442 37999999999999885
No 155
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.65 E-value=1.3e-15 Score=120.95 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.6
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccc
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~----~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 348 (476)
|+|+|+++| ++.|++++|+|.+|.+++||+++++|.+ ..++|++|+++++++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6889999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeeEEec
Q 011836 349 SGFVLSS 355 (476)
Q Consensus 349 ~G~vl~~ 355 (476)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 156
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.64 E-value=9.6e-16 Score=140.56 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|+.|+|||||+++|.. +... ....|+......+...+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~--~~~~--------------------------------~~~~T~~~~~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD--DRLA--------------------------------QHVPTLHPTSEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc--CCCc--------------------------------ccCCccCcceEEEEECC
Confidence 3458899999999999999999842 1110 00112222223455667
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 198 (476)
..+.++|+||+..|...+...+..+|++++|+|+.+... + ....+.+..+. ..+.| ++|++||+|+...
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~ 135 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP-FLILGNKIDLPGA 135 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC
Confidence 889999999999998877788899999999999986421 1 11222222222 23577 8999999998532
Q ss_pred CchHHHHHHHHHHHHHHHHhcCC----------CccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~----------~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +. +++...+..... .....++++++||++|.|+.++
T Consensus 136 ~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 136 V-SE-------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred c-CH-------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 1 22 222233321111 0012357999999999999985
No 157
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.64 E-value=2.4e-15 Score=132.67 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+++|||||+++|+.... ... ..+..+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~--~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF--DEN---------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC--CCc---------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999953211 100 00112222222222222244778
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++|+||+..|.......+..+|++++|+|+.+... + ......+..+... +.| +++++||+|+... ..
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--~~ 122 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQ--RQ 122 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEccccccc--cc
Confidence 999999999999988888999999999999987421 1 1223344444443 366 8999999998411 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+++..+.... .++++.+|++++.|+.++
T Consensus 123 ----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 123 ----VSTEEAQQFAKEN------GLLFFETSAKTGENVEEL 153 (159)
T ss_pred ----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHH
Confidence 1123333344433 357999999999999874
No 158
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=5.6e-15 Score=135.25 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=101.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
...+|+++|..++|||||+.++.. +.... +....++.+.....+..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTES-----------------------------PYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCcceeEEEEEEEEECCE
Confidence 468999999999999999999842 22111 111122333322223333
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
...+.|+||||+.+|...+...++.+|++|||+|.++... |+ .....+..+.. -++| +|++.||+|+....
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~ 126 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFKR 126 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhcc
Confidence 4678999999999999888777899999999999987642 22 23333333433 2566 89999999983210
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. -..++...+.+..+ ++++.+||++|.|+.++++
T Consensus 127 --~----v~~~~~~~~a~~~~------~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 127 --Q----VATEQAQAYAERNG------MTFFEVSPLCNFNITESFT 160 (189)
T ss_pred --C----CCHHHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 0 11233444555543 4799999999999998644
No 159
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.64 E-value=1.6e-15 Score=140.30 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=97.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
+.|+++|..++|||||+.++++ +.+.. +....++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~--~~f~~-----------------------------~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD--DTFCE-----------------------------ACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh--CCCCC-----------------------------cCCCcceeEEEEEEEEECCEEE
Confidence 3689999999999999999852 22211 1112222333333344444 6
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 200 (476)
.+.|+||||+++|...+...++.+|++|+|+|.++... |+ .....+..+.. .++| +++|.||+|+...
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~-- 120 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD-- 120 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--
Confidence 78999999999999888888999999999999998642 22 22223333332 2466 8999999998321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.+ . ...+...+.+.. ..+.++.+||++|.|+.+++.
T Consensus 121 ~~--v--~~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 121 RE--I--SRQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred cc--c--CHHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 11 0 011222233332 134799999999999998653
No 160
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=4.2e-15 Score=133.66 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|++|+|||||+++|+... ... .....+..+.....+...+ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK--FSN-----------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------------------CcCCccceEEEEEEEEECCEEE
Confidence 379999999999999999995321 100 0001111112122233333 4
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHHc------CCceEEEEEeeccCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL------GVTKLLLVVNKMDDH 196 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~------~ip~~ivviNK~D~~ 196 (476)
.+.++|+||+..|.......++.+|++|+++|+.+... +. ...... .++... ++| +++++||+|+.
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE---SLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 67899999999999888888999999999999987531 11 111111 112221 577 88999999994
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
..+ . ...+.+..+++..+ .++++++|+++|.|+.++.
T Consensus 123 ~~~--~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 123 EKR--Q----VSTKKAQQWCQSNG-----NIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ccc--c----cCHHHHHHHHHHcC-----CceEEEEECCCCCCHHHHH
Confidence 211 0 01122333444443 3589999999999998853
No 161
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=3e-15 Score=138.73 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=96.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe---CC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~ 122 (476)
.+|+++|.+++|||||+++|+. +.+.. .....+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~--~~~~~-----------------------------~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH--GIFSQ-----------------------------HYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCceeEEEEEEEEEECCCCE
Confidence 3799999999999999999853 21111 00111122222222333 34
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-------HcCCceEEEEEeeccC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-------~~~ip~~ivviNK~D~ 195 (476)
..+.|+||||++.|...+...++.+|++|+|+|...... |+ ...+.+..+. ..++| +++|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 678999999999998888888899999999999987532 11 1111112121 13567 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.... ....+++..+++..++ .+++++||++|.|+.++++
T Consensus 123 ~~~~------~~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 123 KKRL------AKDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred cccc------ccCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 4211 0112334445555543 3799999999999998644
No 162
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.64 E-value=1e-15 Score=142.09 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=90.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+...... ....+.|++.....+.+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------EDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc-------------------------------CCccceeccceeEEEEecC
Confidence 345899999999999999999985321000 0011233333333444444
Q ss_pred e-EEEEEeCCCCcCh--------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEE
Q 011836 123 T-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 190 (476)
Q Consensus 123 ~-~~~liDtPGh~~~--------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivvi 190 (476)
. .+.|+||||+.+. ...+...+..+|++++|+|+..+... .+...+...+... ++| +++|+
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 3 8999999997331 11222335689999999999876421 1222333334333 456 89999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
||+|+... .... ..+.. ...+++++||++|.|+.++
T Consensus 161 NK~Dl~~~----~~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 161 NKIDLLDD----EELE-------ERLEA------GRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred EccccCCh----HHHH-------HHhhc------CCCceEEEEcCCCCCHHHH
Confidence 99999432 1111 12221 2357999999999999885
No 163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=9e-15 Score=130.03 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=96.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.+|+|||||+++|+...-.. .. .....+.......+...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~~ 52 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI------------------------VS------PKPQTTRNRIRGIYTDDDAQ 52 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe------------------------cc------CCCCceeceEEEEEEcCCeE
Confidence 5789999999999999999995321000 00 01112222222234445678
Q ss_pred EEEEeCCCCcChH--------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 125 FTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~~~--------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
+.++||||..... ......+..+|++++|+|+..... ......+..+...+.| +++++||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhcc
Confidence 9999999976532 234455789999999999998621 3444555666666788 88999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. .....+....+ ....+ ..+++++|++++.|++++
T Consensus 125 ~~---~~~~~~~~~~~---~~~~~-----~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 125 KD---KEDLLPLLEKL---KELGP-----FAEIFPISALKGENVDEL 160 (168)
T ss_pred cc---HHHHHHHHHHH---HhccC-----CCceEEEEeccCCChHHH
Confidence 21 22222222222 22221 247999999999999874
No 164
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=2.3e-15 Score=134.61 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|.+++|||||+++|+.. ... .+..+.++.+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRN--EFN-----------------------------LDSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCccceEEEEEEEEECCEE
Confidence 368999999999999999999521 110 00012222233333333443
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.++|+||+.+|.......+..+|++|+|+|+.+... |. ...+.+..+.. .++| +++++||.|+....
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~ 124 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR 124 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 578999999999988888788899999999999986432 11 22223333322 2466 89999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ..++...+.... .++++++||++|.|+.++
T Consensus 125 --~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 125 --AV----PTEEAKAFAEKN------GLSFIETSALDGTNVEEA 156 (165)
T ss_pred --cC----CHHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 10 112223333332 357999999999999985
No 165
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=6.1e-15 Score=132.07 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=93.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++++. +.+.... .+ ..+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~~------------------------~~---t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRESY------------------------IP---TIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCc------------------------CC---cchheE-EEEEEECCEEEEE
Confidence 5799999999999999999852 2211100 00 000011 1111223344678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeeccCCCC-
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 198 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~~~~- 198 (476)
.++||||+.+|......+++.+|++|+|+|.+.... |+ .....+..+.. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---LE---ELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998877778889999999999987642 11 22333333332 3567 8899999998431
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.... .+...+.... .++++++||++|.|+.++
T Consensus 125 ~v~~-------~~~~~~~~~~------~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 125 EVSS-------NEGAACATEW------NCAFMETSAKTNHNVQEL 156 (165)
T ss_pred eecH-------HHHHHHHHHh------CCcEEEeecCCCCCHHHH
Confidence 1111 1112222222 347999999999999985
No 166
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=3.4e-15 Score=135.57 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE----
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---- 119 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~---- 119 (476)
..++|+++|.+|+|||||++++.. +..... ....+..+.....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD--NKFNPK-----------------------------FITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc--CCCCcc-----------------------------CCCccceEEEEEEEEEcCc
Confidence 358999999999999999999842 211110 011111111111111
Q ss_pred --------eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEE
Q 011836 120 --------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLL 187 (476)
Q Consensus 120 --------~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~i 187 (476)
.....+.|+||||+.+|.......++.+|++|+|+|+.+... |. .....+..+... +.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 123678999999999998888888999999999999987431 11 222333333322 455 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 188 vviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|.||+|+.... . ...++...+....+ ++++++||++|.|+.++++
T Consensus 125 iv~nK~Dl~~~~--~----v~~~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 125 LCGNKADLEDQR--Q----VSEEQAKALADKYG------IPYFETSAATGTNVEKAVE 170 (180)
T ss_pred EEEeCccchhcC--c----cCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 999999984321 0 01122333444443 4799999999999998643
No 167
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=1.4e-15 Score=139.80 Aligned_cols=150 Identities=18% Similarity=0.219 Sum_probs=94.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee--EEEEeCCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~--~~~~~~~~ 123 (476)
.+|+++|.+|+|||||+++|+. +..... +....+..+... ..+.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~--~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD--GAFLNG----------------------------NFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCcc----------------------------CcCCcccceeEEEEEEECCEEE
Confidence 3799999999999999999853 211100 000111112111 22222346
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~ 200 (476)
.+.|+||||+.+|.......++.+|++|+|+|+..... |+ .....+..+..+ ++| +++|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~- 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER- 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc-
Confidence 78999999999998877778889999999999987532 11 223333333332 566 89999999984211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+ ....+...+....+ ++++++||++|.|+.+++
T Consensus 123 -~----~~~~~~~~l~~~~~------~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 123 -V----VKREDGERLAKEYG------VPFMETSAKTGLNVELAF 155 (191)
T ss_pred -c----cCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 0 00122233333333 479999999999999863
No 168
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=1.9e-15 Score=134.22 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=95.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++++... .. ..-.|+......+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV--------------------------------TTIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------CCCCCcCcceEEEEECCEEEE
Confidence 58999999999999999995321 00 001112222233455678999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++|+||+..|.......+..+|++++|+|+..... + ......+..+. ..+.| +++++||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999998777777889999999999997621 1 12233332222 23567 89999999984322
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+++.+.+.... .. ...++++++||++|.|+.++
T Consensus 117 -~~~~~~~~~~~~~----~~-~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 117 -SVSELIEKLGLEK----IL-GRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred -CHHHHHHhhChhh----cc-CCcEEEEEeeCCCCCCHHHH
Confidence 1222322221111 11 12568999999999999885
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=6.8e-15 Score=135.53 Aligned_cols=151 Identities=18% Similarity=0.208 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.... .. ......|.|........ +
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~---~ 69 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-LA----------------------------RTSKTPGRTQLINFFEV---N 69 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------------------------cccCCCCceeEEEEEec---C
Confidence 3568999999999999999999963210 00 00112345554443322 4
Q ss_pred eEEEEEeCCCCc----------ChHHHHHHhhh---hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 123 TRFTILDAPGHK----------SYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPGh~----------~~~~~~~~~~~---~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
.++.|+||||+. .|.......+. .++++++|+|+..+.. ....+.+..+...++| ++++
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EEEE
Confidence 789999999963 23222333333 4578889999887632 2334455666777888 8899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+||+|+.. ....+...+.+...+... ..+++|+||++|.|+.++
T Consensus 142 ~nK~Dl~~----~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l 185 (196)
T PRK00454 142 LTKADKLK----KGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDEL 185 (196)
T ss_pred EECcccCC----HHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHH
Confidence 99999832 233444555555555443 247899999999999884
No 170
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.63 E-value=2.9e-15 Score=133.90 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee--EEEEeCCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~--~~~~~~~~ 123 (476)
++|+++|++++|||||+++|+... .. .+....+..+... ..+.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR--FV-----------------------------SKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCccceeEEEEEEEECCeEE
Confidence 479999999999999999995311 10 0011112222222 22233356
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--------cCCceEEEEEeeccC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--------~~ip~~ivviNK~D~ 195 (476)
.++|+||||+.+|.......+..+|++|+|+|+++... |+ .....+..+.. .+.| +++++||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 88999999999998877777889999999999987532 11 12222222222 2355 8999999998
Q ss_pred CCC-CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 196 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... ..+. .+...+....+ .+++++||++|.|+.++.
T Consensus 123 ~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 123 TKHRAVSE-------DEGRLWAESKG------FKYFETSACTGEGVNEMF 159 (168)
T ss_pred ccccccCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 421 1111 12222333332 479999999999999863
No 171
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=4.1e-15 Score=147.41 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=97.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-C
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-E 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~ 121 (476)
|-...|+++|.+|||||||+++|......+. ...+.|.......+.+ +
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va-------------------------------~ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------------CCCCceeCceEEEEEeCC
Confidence 4457899999999999999999953211110 1134566665555666 4
Q ss_pred CeEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011836 122 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivv 189 (476)
...++++|+||..+ +...+++.+..+|++|+|+|+.+... + .+.......+.. .+.| +++|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL~~~~~~L~~kp-~IIV 277 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNELEKYSPELADKP-RILV 277 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHHHHhhhhcccCC-eEEE
Confidence 57899999999632 44556667788999999999986421 1 122222233332 2566 8899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+||+|+.... +..+ ..+..+++.. ..+++++||++++|+.++.+
T Consensus 278 ~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 278 LNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 9999984321 1111 1122223332 24799999999999998643
No 172
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=3.9e-15 Score=153.01 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=99.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|-...|+++|.+|||||||+++|......+ ....+.|+......+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECC
Confidence 456789999999999999999995321111 0124566666666677788
Q ss_pred eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCcc-ccccCCCCchHHHH-HHH----------HHcCC
Q 011836 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEF-ETGFEKGGQTREHV-MLA----------KTLGV 183 (476)
Q Consensus 123 ~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~-e~~~~~~~qt~e~l-~~~----------~~~~i 183 (476)
..|+|+||||..+ .....++.+..+|++|+|||+..... ...+.......+.+ .+. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8999999999532 22344556778999999999974210 00000000111112 222 12356
Q ss_pred ceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 184 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 184 p~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
| +|||+||+|++.. . +..+.+...+...+ ++++++||+++.|+.++..
T Consensus 286 P-~IVVlNKiDL~da---~----el~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 286 P-RLVVLNKIDVPDA---R----ELAEFVRPELEARG------WPVFEVSAASREGLRELSF 333 (500)
T ss_pred C-EEEEEECccchhh---H----HHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 6 8899999998432 1 12223333444433 4799999999999999754
No 173
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=6.9e-15 Score=132.45 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|++|+|||||+++++. +.... +....+..+.....+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFPE-----------------------------RTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------ccccceeEEEEEEEEEECCeE
Confidence 47899999999999999999852 21110 1111222222223333433
Q ss_pred eEEEEEeCCCCcChHHH-HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 011836 123 TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~-~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 197 (476)
..+.++||||+.+|... ....++.+|++++|+|+..... |. .....+..+.. .++| +++|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 68899999999988743 4455789999999999987642 11 22233333333 2467 899999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc---Ccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~---g~~i~~~ 243 (476)
.. + ...+....+.+.. .++++++||++ +.|+.++
T Consensus 124 ~~--~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QI--Q----VPTDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hc--C----CCHHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 21 0 0011222233332 35799999999 5666654
No 174
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.63 E-value=1.7e-15 Score=120.37 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.3
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
|+|+|+++| ++.|++++|+|.+|++++||++++.|. +...+|+||+++++++++|.|||.|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578899999999999999999999986 5789999999999999999999999999999988999999
Q ss_pred eEEecCC
Q 011836 351 FVLSSVA 357 (476)
Q Consensus 351 ~vl~~~~ 357 (476)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 175
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=2.5e-15 Score=134.28 Aligned_cols=146 Identities=22% Similarity=0.220 Sum_probs=93.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--Ce
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|.+|+|||||+++++ .|.+.... + ...+.+. ...+... ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~--~~~~~~~~----------------------~-----~t~~~~~---~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV--QGIFVEKY----------------------D-----PTIEDSY---RKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH--hCCCCccc----------------------C-----CcchheE---EEEEEECCEEE
Confidence 579999999999999999985 23221100 0 0001111 1123333 45
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~ 199 (476)
.+.|+||||+..|.......++.+|++++|+|...... |+ ...+.+..+. ..++| +++++||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67899999999999888888999999999999876531 11 1222222222 23577 99999999984321
Q ss_pred -chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... +....+.+..+ ++++++||++|.|+.++
T Consensus 123 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 123 VVGK-------EQGQNLARQWG------CAFLETSAKAKINVNEI 154 (164)
T ss_pred EEcH-------HHHHHHHHHhC------CEEEEeeCCCCCCHHHH
Confidence 111 11222333332 47999999999999985
No 176
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=4.7e-15 Score=135.46 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|.+|+|||||+++|.. +.+.. ...|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN--DRLAQ--------------------------------HQPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc--CCCcc--------------------------------cCCccccceEEEEECC
Confidence 3458999999999999999999852 11100 0011222223345567
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 198 (476)
..+.++|+||+..+...+...+..+|++++|+|+.+... + ....+.+..+. ..++| +++++||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 899999999999998888888899999999999987521 1 12333332222 24677 9999999998532
Q ss_pred CchHHHHHHHHHHHHHH--HH---hcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPF--LK---ASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~--l~---~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+.+ ++.+.+.-. .. +.+. ....++++||++|.|+.+.
T Consensus 134 -~~~~---~i~~~l~l~~~~~~~~~~~~---~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 134 -ASED---ELRYALGLTNTTGSKGKVGV---RPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred -CCHH---HHHHHcCCCcccccccccCC---ceeEEEEeecccCCChHHH
Confidence 2222 222222100 00 0011 2457999999999999885
No 177
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=2.4e-15 Score=137.09 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=97.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|..++|||||+.++. .|.... . . .|+......++..+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~--~~~~~~-------------------------~---~----~T~~~~~~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK--LGEVVT-------------------------T---I----PTIGFNVETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCccc-------------------------c---C----CccccceEEEEECC
Confidence 345799999999999999999983 221110 0 0 11112222345577
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-HH---cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~~---~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+..|...+...++.+|++|+|+|+.+... | ....+.+... .. ...| +++++||.|+++.
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---I---GDAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 899999999999998888888999999999999986421 1 1223333322 21 2455 9999999998543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. ..+ ++.. .+....+. ...+.++++||++|.|+.++++
T Consensus 134 ~-~~~---~i~~----~l~~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 134 M-STT---EVTE----KLGLHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred C-CHH---HHHH----HhCCCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 2 111 2212 22111111 1235677999999999998643
No 178
>PLN03118 Rab family protein; Provisional
Probab=99.62 E-value=5e-15 Score=138.33 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|+. +.+.. .....|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~--~~~~~----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS--SSVED----------------------------LAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh--CCCCC----------------------------cCCCceeEEEEEEEEECCEE
Confidence 3468999999999999999999953 21100 00112222222222222234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHH----cCCceEEEEEeeccCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~----~~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+.+|.......++.+|++|+|+|+.+... |. ...+.+ ..+.. .++| +++|+||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 678999999999999888888999999999999987532 11 111212 11221 2456 788999999843
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. .. ..++...+.... .++++++||++|.|+.++++
T Consensus 135 ~~--~i----~~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 135 ER--DV----SREEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred cC--cc----CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 21 10 011222233333 24799999999999999644
No 179
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=2.4e-15 Score=150.31 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=92.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 122 (476)
...+|+++|.+|+|||||+++|+... .+ . ....+.|.+.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~------------------------v------~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY------------------------A------ADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee------------------------e------ccCCccccCCEEEEEEeCCC
Confidence 45899999999999999999995321 00 0 01234555555555555 46
Q ss_pred eEEEEEeCCCC-cCh-------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEe
Q 011836 123 TRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh-~~~-------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviN 191 (476)
..+.|+||||. .+. .+.+...+..+|++++|+|+.+.... .+.......+..+ +.| +++|+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 79999999997 221 22334457799999999999876421 1221122333433 566 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+|+.. ..... .... + ..+++++||++|.|+.++
T Consensus 310 K~Dl~~----~~~v~-------~~~~--~-----~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 310 KIDLLD----EPRIE-------RLEE--G-----YPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred eecCCC----hHhHH-------HHHh--C-----CCCEEEEEccCCCCHHHH
Confidence 999832 11111 1111 1 136899999999999884
No 180
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.62 E-value=7.3e-15 Score=132.42 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=94.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--CeE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 124 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 124 (476)
+|+++|..++|||||+++++. +.+.. +....+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~--~~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK--DVFDK-----------------------------NYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 689999999999999999953 22211 001111122222223333 467
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~---ip~~ivviNK~D~~~~~~~ 201 (476)
+.|+||||+.+|.......++.+|++++|+|+.+... + ....+++..+.... .+++++|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--
Confidence 9999999999998888888899999999999987421 1 12233333332222 23388999999984221
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.......+...+.+.++ .+++++||++|.|+.+++.
T Consensus 123 --~~~~~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 --QYALMEQDAIKLAAEMQ------AEYWSVSALSGENVREFFF 158 (170)
T ss_pred --cccccHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 11111222333444432 4789999999999998643
No 181
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.62 E-value=4.4e-15 Score=134.44 Aligned_cols=152 Identities=19% Similarity=0.258 Sum_probs=105.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|..|||||||+++|. .+.+. ....|.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~--------------------------------~~~pT~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEIS--------------------------------ETIPTIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEE--------------------------------EEEEESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hcccc--------------------------------ccCcccccccceeeeCc
Confidence 667999999999999999999983 12110 12234344445677789
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..++++|.+|+..+...+...+..+|++|+|||+.+... + ...++.+..+.. .++| ++|++||.|++++
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~ 130 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPDA 130 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccCc
Confidence 999999999999998888888999999999999997521 1 234544444332 2566 8999999999654
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
- +.+ ++...+.-..+.....+.++++||.+|+|+.+.
T Consensus 131 ~-~~~-------~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 131 M-SEE-------EIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp S-THH-------HHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred c-hhh-------HHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 2 222 222222211121124678999999999999884
No 182
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.62 E-value=4.8e-15 Score=132.07 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++++. +..... ..+. .+-.. .....+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~------------------------~~~t---~~~~~-~~~~~~~~~~~~l 51 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------YDPT---IEDSY-RKQIEVDGQQCML 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------cCCc---hhhhE-EEEEEECCEEEEE
Confidence 5899999999999999999953 221110 0000 00000 0111122223567
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 201 (476)
.|+||||+++|.......++.+|++++|+|..+... |+ .....+..+.. .++| +++++||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~-- 122 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDER-- 122 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc--
Confidence 899999999998877778899999999999987531 11 22222222322 2567 88999999984311
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . ..++...+.+..+ .+++++||++|.|+.++
T Consensus 123 ~-~---~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 123 V-V---SREEGQALARQWG------CPFYETSAKSKINVDEV 154 (163)
T ss_pred e-e---cHHHHHHHHHHcC------CeEEEecCCCCCCHHHH
Confidence 1 0 1112222333332 48999999999999985
No 183
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.5e-15 Score=130.30 Aligned_cols=149 Identities=19% Similarity=0.289 Sum_probs=106.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE----EE
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH----FE 119 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~----~~ 119 (476)
...+|+++|..++|||||+-|+ ..|.+++. .-.||..++.. ..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rf--vk~~F~e~-------------------------------~e~TIGaaF~tktv~~~ 50 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRF--VKDQFHEN-------------------------------IEPTIGAAFLTKTVTVD 50 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhh--hhCccccc-------------------------------cccccccEEEEEEEEeC
Confidence 4578999999999999999776 44444321 12344443332 22
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE--EEeeccCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL--VVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv--viNK~D~~~ 197 (476)
....++.|+||+|+++|....-.+.+.|++||+|.|.++... | .+.+..++.+....-|.+++ |.||+|+..
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F---~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---F---EKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---H---HHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 234678899999999999888889999999999999998642 3 35677777777766565655 789999933
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+..+ ++...+..+.| ..++.+||++|.|+.++
T Consensus 125 --~R~V~~----~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 125 --RREVEF----EEAQAYAESQG------LLFFETSAKTGENVNEI 158 (200)
T ss_pred --cccccH----HHHHHHHHhcC------CEEEEEecccccCHHHH
Confidence 122223 33444555554 47999999999999985
No 184
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=3.7e-15 Score=133.92 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+++|... ... ....|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~-------------------------------~~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK-------------------------------KVAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc-------------------------------cccCcccceEEEEEECCEEEE
Confidence 4899999999999999998421 110 011222222334566788999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCchH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~~ 202 (476)
++|+||+.+|...+...+..+|++|+|+|+.+... + ......+..+.. .++| +++++||+|++... +.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CH
Confidence 99999999999888888999999999999987521 1 123333333322 3567 89999999995432 12
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccC------ccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG------LNMKT 242 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g------~~i~~ 242 (476)
..+.+.. .+..+.++.+ ..++++++||++| .|+.+
T Consensus 119 ~~i~~~~-~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 119 ADVIEYL-SLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred HHHHHhc-CcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 1111111 1111111111 1368999999998 56655
No 185
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.62 E-value=5.1e-15 Score=132.63 Aligned_cols=146 Identities=15% Similarity=0.118 Sum_probs=94.3
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|..|+|||||+++|+. +..... ...|+......+...+..+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~--~~~~~~-------------------------------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS--ERSLES-------------------------------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc--CCCccc-------------------------------ccccCCcceEEEeeCCeEEEE
Confidence 78999999999999999952 111100 001111122345667889999
Q ss_pred EeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCchHHHH
Q 011836 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 128 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
+||||+.+|...+...++.+|++|+|+|+.+... | ...++.+..+.. .++| +++|+||+|+.... . .
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~---~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-S---V 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-C---H
Confidence 9999999999888888999999999999987531 1 122333333321 3677 89999999985432 1 1
Q ss_pred HHHHHH--HHHHHHhcCCCccCCeeEEEeeccc------Ccccccc
Q 011836 206 DEIESK--MTPFLKASGYNVKKDVQFLPISGLM------GLNMKTR 243 (476)
Q Consensus 206 ~~~~~~--l~~~l~~~g~~~~~~~~iipiSa~~------g~~i~~~ 243 (476)
+++.+. +..+.++ ..++++++||++ ++|+.++
T Consensus 118 ~~i~~~~~~~~~~~~------~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 118 QEIHKELELEPIARG------RRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred HHHHHHhCChhhcCC------CceEEEEeeecCCCChhHHHHHHHH
Confidence 222211 1222222 246789999988 7777764
No 186
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.62 E-value=9.5e-15 Score=134.90 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=88.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|.+|+|||||+++++. +.+.. +....++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA--QEFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--CCCCc-----------------------------ccCCccccccceeEEEECCEEE
Confidence 4799999999999999999853 22111 0001111111111223334 6
Q ss_pred EEEEEeCCCCcChH--------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH------HcCCceEEEE
Q 011836 124 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLV 189 (476)
Q Consensus 124 ~~~liDtPGh~~~~--------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~------~~~ip~~ivv 189 (476)
.+.|+||||+.+|. ......+..+|++|+|+|+++... |+ .....+..+. ..++| +++|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 78899999986652 113345688999999999987531 11 1122222222 23567 8999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.||+|+...... ..+.+..+.++. + .++++++||++|.|+.++++
T Consensus 123 gNK~Dl~~~~~~------~~~~~~~~~~~~-~----~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 123 GNKRDQQRHRFA------PRHVLSVLVRKS-W----KCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EECccccccccc------cHHHHHHHHHHh-c----CCcEEEecCCCCCCHHHHHH
Confidence 999999432110 111222233221 1 35899999999999998643
No 187
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.61 E-value=5.4e-14 Score=132.43 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=114.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+...|+++|++|+|||||++.|+...... ......|. +. .....
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~----i~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-IT----VVTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EE----EEecC
Confidence 4556889999999999999999986421100 00011221 11 12236
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+.+++++||||+. ..++..+..+|++++|+|+..+.. .++.+.+..+...++|.+|+++||+|+...
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~--- 148 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDLFKK--- 148 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEeccccCCc---
Confidence 7889999999963 677778899999999999998753 567778888888899866679999998432
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCC
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 266 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~ 266 (476)
...++++.+.++..+..--+ .+.+++++||++... +||.++..|...++.+..
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 149 NKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKF 201 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCC
Confidence 33455666666664332112 245999999987632 456667778888877654
No 188
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=2.4e-15 Score=135.77 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++++|||||+++++. +.+.... .............+......+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~--~~~~~~~----------------------------~~t~~~~~~~~~~~~~~~~~~ 50 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN--DAFPEEY----------------------------VPTVFDHYAVSVTVGGKQYLL 50 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCCC----------------------------CCceeeeeEEEEEECCEEEEE
Confidence 4799999999999999999853 2211100 000000000111222233567
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHH--HcCCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAK--TLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~--~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++||||+.+|.......++.+|++++|+|..+... |+ ...+ .+..+. ..++| +++++||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~ 123 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTL 123 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhH
Confidence 899999999998777677789999999999987531 11 1111 122222 24677 88999999984321111
Q ss_pred HHH------HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~------~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .-..++...+.+.++. .+++.+||++|.|+.++
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~ 165 (174)
T cd04135 124 ARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTV 165 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHH
Confidence 000 0011233444555543 37999999999999986
No 189
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=3.3e-15 Score=154.40 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=99.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|+...-. .+ ....|.|.+.....+..++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a------------------------~v------~~~~gtT~d~~~~~i~~~g 262 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERA------------------------IV------TDIAGTTRDVIEEHINLDG 262 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCc------------------------cc------CCCCCcccccEEEEEEECC
Confidence 34579999999999999999999632110 01 1135677777777778888
Q ss_pred eEEEEEeCCCCcChHH--------HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~--------~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
..+.|+||||+.++.. .+...+..+|++++|+|+..+.. .+..+.+.. ..+.| +++|+||+|
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~~--~~~~p-iiiV~NK~D 332 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILEE--LKDKP-VIVVLNKAD 332 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHHh--cCCCC-cEEEEEhhh
Confidence 9999999999876532 23446789999999999987642 122222222 34666 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... . .. .. ...+++++||++|.|+.++.+
T Consensus 333 L~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 333 LTGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred ccccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 94321 0 00 11 134789999999999998643
No 190
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.4e-15 Score=148.71 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=110.1
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
....-..-++++++|.||+|||||+|+|+...-+| ++| ..|.|.|+-...
T Consensus 210 ~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------------------VTd------I~GTTRDviee~ 259 (454)
T COG0486 210 QGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAI------------------------VTD------IAGTTRDVIEED 259 (454)
T ss_pred hhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceE------------------------ecC------CCCCccceEEEE
Confidence 33444567899999999999999999997544332 333 479999999999
Q ss_pred EEeCCeEEEEEeCCCCcC---h-----HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 118 FETETTRFTILDAPGHKS---Y-----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~---~-----~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
+..+++.+.++||+|..+ . +......+..||.+++|+|++.+.. .+....+. +...+.| +++|
T Consensus 260 i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v 330 (454)
T COG0486 260 INLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVV 330 (454)
T ss_pred EEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEE
Confidence 999999999999999543 3 4445566789999999999998632 23333333 3444566 8899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+||+|+..... ...+ +. ....+++++|+++|+|++.+.+
T Consensus 331 ~NK~DL~~~~~--------~~~~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 331 LNKADLVSKIE--------LESE-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred Eechhcccccc--------cchh-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 99999954321 0111 11 1234799999999999998644
No 191
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=4.8e-15 Score=133.66 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=95.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|... ... ......|.+ ...+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~--~~~----------------------------~~~~t~g~~----~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE--DIS----------------------------HITPTQGFN----IKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC--CCc----------------------------ccCCCCCcc----eEEEEECC
Confidence 33689999999999999999998421 000 000112222 22345567
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH----HHHcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~----~~~~~ip~~ivviNK~D~~~~ 198 (476)
..+.++|+||+..|...+...+..+|++++|+|+.+... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 899999999999988887788899999999999986421 1 122222222 2234677 8899999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ..+++.+ .+....+. ....+++++||++|.|+.++
T Consensus 131 ~----~~~~i~~----~l~~~~~~-~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 131 A----PAEEIAE----ALNLHDLR-DRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred C----CHHHHHH----HcCCcccC-CCeEEEEEeECCCCCCHHHH
Confidence 1 1122222 22111111 12346889999999999885
No 192
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=5e-15 Score=132.93 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
.+|+++|.+|+|||||+++++. +..... ....+.++.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCCceeeEEEEEEEEECCEEE
Confidence 3799999999999999999852 211110 0011111222222222 346
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCch
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~ 201 (476)
.+.++||||+.+|.......+..+|++|+|+|.++... |. .....+..+... ++| +++++||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~- 121 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKV- 121 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhcccccC-
Confidence 78999999999887666666789999999999987642 11 112222333222 577 899999999842210
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..+...+.+.. ..+++++||++|.|+.++++
T Consensus 122 -------~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 122 -------KAKQITFHRKK------NLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred -------CHHHHHHHHHc------CCEEEEEeCCCCCChHHHHH
Confidence 01111222221 35799999999999998643
No 193
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.61 E-value=9e-15 Score=129.03 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=93.7
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|++|+|||||+++|... .... + ..+ |+......+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~--~~~~------------------------~-----~~~--t~~~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG--QFSE------------------------D-----TIP--TVGFNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC--CCCc------------------------C-----ccC--CCCcceEEEEECCEEEEE
Confidence 789999999999999999421 1100 0 011 111222234456688999
Q ss_pred EeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCchHH
Q 011836 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 128 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
+|+||+..|...+...+..+|++++|+|+..... + .+..+.+..+.. .++| +++++||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999999888888999999999999986421 1 123333333322 4677 88999999984321
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+++...+. +.... ...++++++|+++|.|+.++
T Consensus 118 ~~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 118 SVDELIEQMN--LKSIT---DREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CHHHHHHHhC--ccccc---CCceEEEEEEeccCCChHHH
Confidence 1111211110 01111 12468999999999999884
No 194
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=7.9e-15 Score=145.26 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=93.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+-...|+++|.+|||||||+++|......+. .....|.......+...+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------------~y~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------------CCCCCccCCEEEEEEeCC
Confidence 4467899999999999999999953211110 012234443334445555
Q ss_pred -eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011836 123 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 123 -~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivv 189 (476)
..++|+||||..+ +....++.+..+|++|+|+|+........+ .+.......+.. .+.| +++|
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~---e~l~~l~~EL~~~~~~l~~kp-~IIV 279 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI---EDYEIIRNELKKYSPELAEKP-RIVV 279 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH---HHHHHHHHHHHHhhhhhccCC-EEEE
Confidence 8899999999742 344556667789999999999864110001 111112222222 2566 8899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+||+|+... ...++..+.+ ...++ .+++++||+++.|+.++
T Consensus 280 ~NK~DL~~~----~~~~~~~~~l---~~~~~------~~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 280 LNKIDLLDE----EELAELLKEL---KKALG------KPVFPISALTGEGLDEL 320 (329)
T ss_pred EeCccCCCh----HHHHHHHHHH---HHHcC------CcEEEEEccCCcCHHHH
Confidence 999998432 2222333322 22322 47999999999999985
No 195
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=5.7e-15 Score=131.52 Aligned_cols=152 Identities=22% Similarity=0.268 Sum_probs=93.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|++. ..... ..+. .+.... ....+......+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~--~~~~~------------------------~~~~---~~~~~~-~~~~~~~~~~~~~ 51 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD--EFVED------------------------YEPT---KADSYR-KKVVLDGEDVQLN 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCccc------------------------cCCc---chhhEE-EEEEECCEEEEEE
Confidence 7999999999999999999632 11100 0000 000000 0112223346799
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccCCCCCchHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
++||||+.+|.......++.+|++++|+|...... |.........+.... ..++| +++|+||+|+.... ..
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~--~~-- 123 (164)
T cd04139 52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR--QV-- 123 (164)
T ss_pred EEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc--cc--
Confidence 99999999999988889999999999999876421 110011222222111 24677 89999999985311 00
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.......+.+.++ .+++++||++|.|+.++.
T Consensus 124 --~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 124 --SSEEAANLARQWG------VPYVETSAKTRQNVEKAF 154 (164)
T ss_pred --CHHHHHHHHHHhC------CeEEEeeCCCCCCHHHHH
Confidence 1112222333333 479999999999999863
No 196
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.61 E-value=1.7e-14 Score=135.14 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=95.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC---C
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~ 122 (476)
++|+++|.+|+|||||+++|+. +.+.. +...-++.+.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~--~~~~~-----------------------------~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK--EGFGK-----------------------------SYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCceeEEEEEEEEEeCCCCE
Confidence 3799999999999999999952 11110 001112223322233332 4
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeeccCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+..|.......++.+|++|+|+|+.+... |+ ...+.+..+... ..+++++|.||+|+..
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 688999999999888877778899999999999987532 21 222333333322 1223889999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. + ...++...+.+..+ ++++++||++|.|+.++++
T Consensus 124 ~~--~----v~~~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 124 NR--T----VKDDKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred cc--c----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 11 1 11122333444433 4789999999999998643
No 197
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.61 E-value=2.1e-14 Score=130.82 Aligned_cols=154 Identities=17% Similarity=0.240 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|..++|||||+.+++. +.... +....+..+.....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE--GEFDE-----------------------------DYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCccceEEEEEEEEECCEEE
Confidence 4799999999999999999853 22111 0011111122212233333 6
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~ 200 (476)
.+.++||+|+..|...+...++.+|++++|+|+.+... |+ ...+.+..+... ..| |+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~-~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP--ILVGTKYDLFAD-L 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE--EEEEEchhcccc-c
Confidence 78999999999998877778899999999999987532 21 222333333332 233 578999998421 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+....+.+.++...+.+..+ .+++++||++|.|+.+++.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111122344444555443 4799999999999999644
No 198
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=9.8e-15 Score=133.91 Aligned_cols=153 Identities=20% Similarity=0.181 Sum_probs=95.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|.+|+|||||+.+++. +...... . ...+.+.. ....++....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~--~~~~~~~----------------------~-----~t~~~~~~-~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQ--NHFIDEY----------------------D-----PTIEDSYR-KQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc--CCCCcCc----------------------C-----CchhhEEE-EEEEECCEEE
Confidence 348999999999999999999853 2111000 0 00111111 1112333346
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 199 (476)
.+.|+||||+.+|...+...+..+|++++|+|+.+... |+ ...+.+..+.. -++| +++++||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 78899999999999988888999999999999987632 11 22222222222 2567 89999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. .. ..+...+.+.++ .+++++||++|.|+.+++.
T Consensus 127 --~--i~--~~~~~~~~~~~~------~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 127 --Q--VS--TGEGQELAKSFG------IPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred --c--cC--HHHHHHHHHHhC------CEEEEeeCCCCCCHHHHHH
Confidence 0 00 111222333332 4799999999999998643
No 199
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=6.4e-15 Score=135.25 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=92.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|+. +.+.... . + ..+... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~~----------------------~--~---t~~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVETY----------------------D--P---TIEDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCccC----------------------C--C---chHhhE-EEEEEECCEEEEEE
Confidence 489999999999999999953 3221100 0 0 000000 00111222235689
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeeccCCCCCc
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~~~~~~ 200 (476)
|+||||+.+|.......++.+|++|+|+|.++... |+ .....+..+.. .++| +|+|.||+|+....
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~- 122 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYER- 122 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccC-
Confidence 99999999999888888999999999999987532 11 22223332222 2466 88999999984211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+-. ......+...++ ++++++||++|.|+.+++.
T Consensus 123 -~v~----~~~~~~~~~~~~------~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 123 -EVS----TEEGAALARRLG------CEFIEASAKTNVNVERAFY 156 (190)
T ss_pred -ccC----HHHHHHHHHHhC------CEEEEecCCCCCCHHHHHH
Confidence 100 111222333333 4799999999999998643
No 200
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=5.5e-15 Score=138.27 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=98.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+++|||||+++|+. +.+.. ...|+...+....+....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~--~~f~~--------------------------------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME--RRFKD--------------------------------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCCC--------------------------------CCCccceEEEEEEeeEEEE
Confidence 4799999999999999999852 21110 0112222223334456789
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCch-
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS- 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~- 201 (476)
.|+||||+..|.......++.+|++|+|+|+++... |. .....+..+.. .++| +|+|.||+|+...+-.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccccccc
Confidence 999999999998888888899999999999987532 11 12222222222 2466 8999999998531000
Q ss_pred ------------HHHHHHHHHHHHHHHHhcCC--------CccCCeeEEEeecccCcccccccc
Q 011836 202 ------------KERYDEIESKMTPFLKASGY--------NVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ------------~~~~~~~~~~l~~~l~~~g~--------~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+....-..++...+.++.+- .+...++++++||++|.|+.+++.
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 00001112233334443320 011135899999999999999744
No 201
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.3e-14 Score=147.34 Aligned_cols=152 Identities=22% Similarity=0.215 Sum_probs=95.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
|-...|+++|.+|||||||+++|......+. ...+.|.......+...
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~ 204 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDD 204 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeC
Confidence 3455899999999999999999953221111 11345555555555555
Q ss_pred CeEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011836 122 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivv 189 (476)
+..++|+|+||... .....++.+..+|++|+|||++.......+ .........+.. .+.| ++||
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IVV 280 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIVV 280 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEEE
Confidence 68899999999632 334455667789999999999753100000 111222223332 3566 7899
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+||+|+... .+.+ ..+.+.++ .+++++||+++.|+.++.+
T Consensus 281 ~NK~DL~~~---~e~l-------~~l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 281 ANKMDLPEA---EENL-------EEFKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred EeCCCCcCC---HHHH-------HHHHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 999998321 1112 22223332 3699999999999999644
No 202
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.60 E-value=1.4e-14 Score=134.08 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=97.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|.+|+|||||+++|+. +.+.. +....+.++.....+...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD--NTFSG-----------------------------SYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CcCccccceeEEEEEEECCE
Confidence 358999999999999999999952 21110 0011122222223333333
Q ss_pred -eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCC
Q 011836 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 -~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+..|...+...++.+|++++|+|+.+... |. ...+.+..+... .+| ++||+||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 578899999999998888888899999999999987532 21 223333333332 355 88999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. ....+...+.+..+ ++++++||++|.|+.++++
T Consensus 127 --~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 --V----VETEDAYKFAGQMG------ISLFETSAKENINVEEMFN 160 (199)
T ss_pred --c----cCHHHHHHHHHHcC------CEEEEEECCCCcCHHHHHH
Confidence 0 01122333344433 4799999999999998644
No 203
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=5.7e-15 Score=136.54 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=90.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--eE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|+.|+|||||+++|+. +..... ....+.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY--DTFEPK------------------------------YRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------------CCCchhhheeEEEEECCEEEE
Confidence 589999999999999999953 211110 00000011112233333 57
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCc
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~ 200 (476)
+.|+||||+.+|.......+..+|++|+|+|+.+... |+ .....+..+. ..++| +|+++||+|+....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~- 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE- 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-
Confidence 8999999999998777778899999999999987531 11 1111111222 13677 89999999984321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.....+... .... ..+ ..+++++||++|.|+.+++
T Consensus 121 ~~v~~~~~~----~~~~-~~~----~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 121 RQVPAKDAL----STVE-LDW----NCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ccccHHHHH----HHHH-hhc----CCcEEEecCCCCCCHHHHH
Confidence 110111111 1111 111 3478999999999999864
No 204
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.60 E-value=1.1e-14 Score=133.93 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=94.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|.+++|||||+++|+. +..... +.....|.++.. ..+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~--~~~~~~--------------------------~~~~t~~~~~~~--~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH--HRFLVG--------------------------PYQNTIGAAFVA--KRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCcCCc--------------------------CcccceeeEEEE--EEEEECCEEE
Confidence 4799999999999999999953 211100 000011122211 1233333 4
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCch
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~ 201 (476)
.+.|+||||+..|.......+..+|++|+|+|.++... |+ .....+..+... ++| +++|+||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 67799999998887776667789999999999987531 11 122333333333 567 8999999998432100
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.... ...++..+....+ ++++++||++|.|+.++++
T Consensus 124 ~~~v--~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQV--DFHDVQDFADEIK------AQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCcc--CHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 0011 1123333444432 4789999999999998644
No 205
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=2.3e-14 Score=128.52 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|+.|+|||||+++|+. +..... .+. .....++.. .+...+..+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~--~~~~~~-------------------------~~~-~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS--EEFPEN-------------------------VPR-VLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CcCCcc-------------------------CCC-cccceEeee---eecCCeEEE
Confidence 3799999999999999999953 221110 000 000112111 122345789
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++||||+..|...+...+..+|++++|+|+.+... |+ +..+ ++..+.. .++| +++|+||+|+.... ..
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-ch
Confidence 999999999888877778899999999999987532 11 1111 2233332 2566 89999999994322 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...+.+..+...+. ...+++++||++|.|+.++
T Consensus 122 ~---~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 122 A---GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEV 155 (166)
T ss_pred h---HHHHHHHHHHHHHh----cccEEEEeccccccCHHHH
Confidence 1 11222222222221 0127999999999999885
No 206
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.59 E-value=8.1e-15 Score=115.48 Aligned_cols=80 Identities=39% Similarity=0.635 Sum_probs=76.3
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeE
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 352 (476)
|||+|.++| ++.|.+++|+|.+|++++||++.+.|++...+|++|+.++.++++|.|||.|++.|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Ee
Q 011836 353 LS 354 (476)
Q Consensus 353 l~ 354 (476)
|+
T Consensus 81 l~ 82 (83)
T cd03696 81 LS 82 (83)
T ss_pred Ec
Confidence 87
No 207
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.59 E-value=1.2e-14 Score=129.70 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-eCCeE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTR 124 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~ 124 (476)
++|+++|.+++|||||+++|+......... .....|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---------------------------YLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---------------------------CCCceEEEEEEEEEEeCCCCEEE
Confidence 479999999999999999985321111100 00012222222222222 23478
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCchH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+.++||||+..|...+...+..+|++++|+|..+... | ......+..+.. .++| +++|+||+|+.... +
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--~ 124 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKA--E 124 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECccccccc--C
Confidence 9999999999998877788899999999999987532 1 112222233332 3567 89999999984221 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .....+.... .++++++||++|.|+.++
T Consensus 125 --~~~--~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 125 --VTD--AQAQAFAQAN------QLKFFKTSALRGVGYEEP 155 (164)
T ss_pred --CCH--HHHHHHHHHc------CCeEEEEeCCCCCChHHH
Confidence 000 0111122222 347999999999999985
No 208
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59 E-value=1.4e-14 Score=129.36 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+.+++. |...... + +. .+ ........+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~~----------------------~--~t---~~-~~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEKY----------------------D--PT---IE-DFYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCCC----------------------C--Cc---hh-heEEEEEEECCEEEEE
Confidence 5899999999999999998852 3221100 0 00 00 0011111122223467
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 201 (476)
.|+||||++.|...+...++.+|++++|+|..+... |. ...+.+..+.. .++| +++++||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~-- 122 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESER-- 122 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhcC--
Confidence 899999999998888888899999999999987531 11 22333222332 3577 89999999983211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . ...+...+.+..+ ++++++||++|.|+.++
T Consensus 123 ~--~--~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 123 E--V--SSAEGRALAEEWG------CPFMETSAKSKTMVNEL 154 (163)
T ss_pred c--c--CHHHHHHHHHHhC------CEEEEecCCCCCCHHHH
Confidence 0 0 0011122223332 47999999999999985
No 209
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=2.4e-14 Score=129.56 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEe---eeEEEEeCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV---GRAHFETET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~---~~~~~~~~~ 122 (476)
++|+++|..++|||||+.+++. +.+... ...|+.. ....+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPGE-------------------------------YIPTVFDNYSANVMVDGKP 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCc-------------------------------CCCcceeeeEEEEEECCEE
Confidence 6899999999999999998852 322110 0011110 011222234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++|+|+|.++... |. ... .++..+.. -++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~ 121 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccCh
Confidence 678899999999998877778889999999999987532 21 111 12232322 2467 89999999984322
Q ss_pred chHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...++..+ ..++...+.+.++ .++++++||++|.|+.++
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~ 166 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTV 166 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHH
Confidence 11111111 1222333444443 248999999999999985
No 210
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.59 E-value=5.4e-15 Score=131.33 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=92.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
.+|+++|.+|+|||||+++|+... .... ..+.++.......+.. ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK--FNEK-----------------------------HESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC-----------------------------cCCccceeEEEEEEEECCEEE
Confidence 379999999999999999996321 1100 0011111121222222 235
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC-
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~- 199 (476)
.+.++|+||+..|.......+..+|++++|+|+.++.. + .+....+..+.. .++| +++++||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~ 122 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---F---QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 78999999999888777777889999999999987642 1 112222222222 2466 88999999985321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... +.+..+.+..+ .+++++|+++|.|+.++
T Consensus 123 ~~~-------~~~~~~~~~~~------~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 123 VSK-------SEAEEYAKSVG------AKHFETSAKTGKGIEEL 153 (162)
T ss_pred CCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 111 22233333333 46899999999999985
No 211
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.59 E-value=9.6e-15 Score=131.90 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee---eEEEEeCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFETET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~~~ 122 (476)
.+|+++|..|+|||||+.+++. +.+... ...|+... ...+....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPDY-------------------------------HDPTIEDAYKQQARIDNEP 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCC-------------------------------cCCcccceEEEEEEECCEE
Confidence 6899999999999999998852 322110 00111111 11122233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.|+||||..+|...+...+..+|++|+|+|.++... |+ ...+....+.. .++| +++|.||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 578999999999998888888999999999999987642 21 22222222222 3577 8999999998321
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. + . ..++...+.+.. +++++++||++|.|+.++++
T Consensus 123 ~--~--v--~~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 123 R--Q--V--TTEEGRNLAREF------NCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred C--c--c--CHHHHHHHHHHh------CCEEEEEecCCCCCHHHHHH
Confidence 0 0 0 111222333443 35899999999999998643
No 212
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=1.4e-14 Score=135.96 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=96.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|..|+|||||+.+++. +..... .....|.++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~---------------------------~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc---------------------------cCCccceeEEEEEEEECCeE
Confidence 5568999999999999999998842 221110 00112222222111122234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEeeccCCCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivviNK~D~~~~~~ 200 (476)
..+.|+||||+.+|...+....+.+|++|+|+|.++... |. .....+..+. ..++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 689999999999998777777899999999999998642 21 1122222222 23567 899999999842211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. +.+ .+.+.. .++++++||++|.|+.+++.
T Consensus 135 ~~-------~~~-~~~~~~------~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 KA-------KQV-TFHRKK------NLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred CH-------HHH-HHHHhc------CCEEEEcCCCCCCCHHHHHH
Confidence 11 111 222222 35799999999999998643
No 213
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=9.3e-15 Score=131.32 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++++. +..... .+ + ..+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~--~~~~~~----------------------~~--~---t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ--NVFIES----------------------YD--P---TIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc----------------------cC--C---cchheE-EEEEEECCEEEEE
Confidence 5799999999999999999952 211100 00 0 000010 0111122233578
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~ 201 (476)
.++||||+.+|...+...+..+|++++|+|..+... ++ ........+. ..+.| +++++||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~-- 122 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR-- 122 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--
Confidence 999999999999888888899999999999987532 11 1111122221 23677 88999999984321
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...++...+.+..+ .++++++||++|.|+.++
T Consensus 123 ~----~~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 123 Q----VSREDGVSLSQQWG-----NVPFYETSARKRTNVDEV 155 (168)
T ss_pred c----cCHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHH
Confidence 1 01112222333332 358999999999999985
No 214
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=1.2e-14 Score=130.45 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+++|+.. ..... ..............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG--KFPTE----------------------------YVPTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCC----------------------------CCCceeeeeEEEEEECCEEEEE
Confidence 47999999999999999999532 11000 0000000111111222234679
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCchHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.++||||+.+|.......+..+|++++|+|+.+... |. ....+.+..+... ++| +++|+||+|+........
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhh
Confidence 999999999886666666788999999999987421 11 1122233333322 477 999999999854321100
Q ss_pred H-----HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 204 R-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~-----~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ..-..+....+....++ .+++++|+++|.|+.++
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEV 164 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHH
Confidence 0 00012333344444432 38999999999999885
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=127.81 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=103.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...-|+++|..|+|||||+|+|+...+. + .....+|.|....++.+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~L-----------------------A------rtSktPGrTq~iNff~~~~~-- 71 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNL-----------------------A------RTSKTPGRTQLINFFEVDDE-- 71 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcce-----------------------e------ecCCCCCccceeEEEEecCc--
Confidence 5578999999999999999999643221 1 11125788888876554322
Q ss_pred EEEEEeCCCC----------cChHHHHHHhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011836 124 RFTILDAPGH----------KSYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 124 ~~~liDtPGh----------~~~~~~~~~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 190 (476)
+.|+|.||+ +.+-..+..++ ....+++++||+..+.. ...++.+..+...++| ++|++
T Consensus 72 -~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~-~~vv~ 142 (200)
T COG0218 72 -LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP-VIVVL 142 (200)
T ss_pred -EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-eEEEE
Confidence 899999994 22333333343 35789999999999863 4578899999999999 88999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
||+|.... .........+.+. +++.+.....++..|+.++.|++++
T Consensus 143 tK~DKi~~----~~~~k~l~~v~~~---l~~~~~~~~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 143 TKADKLKK----SERNKQLNKVAEE---LKKPPPDDQWVVLFSSLKKKGIDEL 188 (200)
T ss_pred EccccCCh----hHHHHHHHHHHHH---hcCCCCccceEEEEecccccCHHHH
Confidence 99999432 2233333433332 2322222223788888899998875
No 216
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.58 E-value=1.7e-14 Score=112.72 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.1
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeE
Q 011836 275 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 275 ~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 352 (476)
|||+|.++|+ +.|..++|+|.+|.+++||+++++|.+..++|++|++++.+++.|.|||+|+++|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999996 45678999999999999999999999999999999999999999999999999998 4677999999
Q ss_pred Eec
Q 011836 353 LSS 355 (476)
Q Consensus 353 l~~ 355 (476)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 217
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.58 E-value=1.7e-14 Score=130.18 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=92.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CCeEE
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTRF 125 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~~ 125 (476)
|+++|.+++|||||+++++. +.+.... ...+. ..-...+.. ....+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPEDY-----------------------------VPTVF-ENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCcEE-eeeeEEEEECCEEEEE
Confidence 58999999999999999853 2211100 00010 110111222 23568
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCchHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.++||||+.+|.......+..+|++|+|+|.++... |+ ......+..+.. .++| +|+|+||+|+.......+
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~ 122 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLR 122 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhh
Confidence 999999999998777777889999999999987521 11 011112222322 2677 999999999843110000
Q ss_pred HHH------HHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 204 RYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ~~~------~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.+. -..++...+.+..+. .+++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 123 ELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVF 164 (174)
T ss_pred hhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHH
Confidence 000 111233345555543 379999999999999863
No 218
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=1.9e-14 Score=147.99 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=99.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.-++.++|+++|++|+|||||+++|+.....+ + ....|.|.+.....+.+
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------------------v------s~~pgtTrd~~~~~i~~ 248 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------------------V------SDIKGTTRDVVEGDFEL 248 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------c------CCCCCcEEEEEEEEEEE
Confidence 33456899999999999999999996422111 1 11357788877777888
Q ss_pred CCeEEEEEeCCCCcChHH--------HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 121 ETTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~--------~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
++..+.++||||+.++.. .....+..+|++++|+|+..+.. .... .+..+...+.| +|+|+||
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK 319 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNK 319 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEEC
Confidence 899999999999865432 23456789999999999987632 1222 34444445777 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+|+...+ . . .+.+.+ ..+++++||++ .|+.++.
T Consensus 320 ~Dl~~~~-----~----~---~~~~~~------~~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 320 IDLKINS-----L----E---FFVSSK------VLNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred ccCCCcc-----h----h---hhhhhc------CCceEEEEEec-CCHHHHH
Confidence 9984221 1 1 112222 23688999998 5776643
No 219
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=3.3e-14 Score=128.73 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee-EEEEeCC--
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETET-- 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~~~-- 122 (476)
.+|+++|..++|||||+.++++ +.+... .-.|+...+ ..+..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~~-------------------------------~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPSE-------------------------------YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCceeeeeEEEEEECCEE
Confidence 6899999999999999999853 322110 011111111 1223333
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+++|...+...++.+|++|+|+|.++... |+ ...+ ++..+.. -++| +|+|.||+|+...+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDP 121 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhCh
Confidence 678899999999998777677889999999999987532 21 1222 2222322 2566 99999999984321
Q ss_pred chHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+.... ..++...+.+..+ .+.++++||++|.|+.++
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~ 166 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNV 166 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHH
Confidence 00000000 0112222333332 258999999999999985
No 220
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-14 Score=135.76 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=115.8
Q ss_pred cccccccccchhhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCch
Q 011836 23 HKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102 (476)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 102 (476)
+.++.....+-.+...+....+.++|+++|.||+|||||+|.++...-. .
T Consensus 50 etsv~p~~pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~------------------------------~ 99 (379)
T KOG1423|consen 50 ETSVGPLYPAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVS------------------------------A 99 (379)
T ss_pred ccccccCccccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccc------------------------------c
Confidence 3344444444445555566778899999999999999999999643211 1
Q ss_pred hhhhcccEEEeeeEEEEeCCeEEEEEeCCC------CcC------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCc
Q 011836 103 EERIKGKTVEVGRAHFETETTRFTILDAPG------HKS------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 170 (476)
Q Consensus 103 ~e~~~g~ti~~~~~~~~~~~~~~~liDtPG------h~~------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~q 170 (476)
..+....|.......+.....++.|+|||| |.. +..+...++..||.+++|+|+...-. ..
T Consensus 100 vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l 172 (379)
T KOG1423|consen 100 VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PL 172 (379)
T ss_pred ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------cc
Confidence 112334566666666778899999999999 111 23355567789999999999985321 22
Q ss_pred hHHHHHHHHH-cCCceEEEEEeeccCCCCCchHHHHHHHHH------------HHHHHHHh----------cCCCccCCe
Q 011836 171 TREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIES------------KMTPFLKA----------SGYNVKKDV 227 (476)
Q Consensus 171 t~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~~~~~~~~~~------------~l~~~l~~----------~g~~~~~~~ 227 (476)
.-+.+..+.. ..+| -|+|.||+|.... +..+-..+. ++.+-+.. +||. ..-
T Consensus 173 ~p~vl~~l~~ys~ip-s~lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws--hfe 246 (379)
T KOG1423|consen 173 HPRVLHMLEEYSKIP-SILVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWS--HFE 246 (379)
T ss_pred ChHHHHHHHHHhcCC-ceeeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcc--cce
Confidence 3334444444 4678 5789999997321 111111111 11111110 0111 112
Q ss_pred eEEEeecccCcccccccc-----CCCCCCCC
Q 011836 228 QFLPISGLMGLNMKTRVD-----KSLCPWWN 253 (476)
Q Consensus 228 ~iipiSa~~g~~i~~~~~-----~~~~~w~~ 253 (476)
.+|++||++|.|+.++.+ +..-||+-
T Consensus 247 ~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 247 RVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred eEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 589999999999998653 44567873
No 221
>PLN03110 Rab GTPase; Provisional
Probab=99.58 E-value=1.9e-14 Score=134.85 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
...+|+++|+.++|||||+++|+.. ... .+....+..+.....+...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~--~~~-----------------------------~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN--EFC-----------------------------LESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCceeEEEEEEEEEECCE
Confidence 4589999999999999999998521 110 0111222233333333333
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+..|.......++.+|++|+|+|..+... |+ .....+..+.. .++| ++++.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 3578999999999998888888899999999999987532 11 12223333333 3576 8999999998322
Q ss_pred C-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. ... +....+.... .++++++||++|.|+.++++
T Consensus 133 ~~~~~-------~~~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 RSVAE-------EDGQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred cCCCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 011 1112222222 35899999999999998644
No 222
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=1.8e-14 Score=130.82 Aligned_cols=149 Identities=18% Similarity=0.134 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
++|+++|++|+|||||+++|+.. ...... ...+.......+.. .++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG--HFVESY------------------------------YPTIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCcccc------------------------------CcchhhhEEEEEEECCEEE
Confidence 68999999999999999999631 111000 00000000111222 345
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~-~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||||+.+|.......+..+|++++|+|..+... ++ .....+. ++.. .+.| +|+++||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 68999999999998877788899999999999987531 11 1222222 2222 3567 88999999984211
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... ...+..+....+ .+++++||++|.|+.+++.
T Consensus 123 --~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 --QVS----TEEGKELAESWG------AAFLESSARENENVEEAFE 156 (180)
T ss_pred --ccC----HHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 000 112222333332 4799999999999998644
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=1.2e-14 Score=128.73 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=93.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--CeE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 124 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 124 (476)
+|+++|++|+|||||+++|+... ..... .+ .+-+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------DP------TIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------CC------ChhHeEEEEEEECCEEEE
Confidence 58999999999999999996321 11100 00 0001111122233 467
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCc
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~ 200 (476)
+.++|+||+.+|.......+..+|++++|+|..+... + ......+..+.. .+.| +++++||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---F---EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 8999999999998888888899999999999987532 1 122232222222 2466 89999999984311
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ...+.+..+.++.+ .+++++|++++.|+.++
T Consensus 121 -~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 121 -Q----VSKEEGKALAKEWG------CPFIETSAKDNINIDEV 152 (160)
T ss_pred -e----ecHHHHHHHHHHcC------CcEEEeccCCCCCHHHH
Confidence 1 11233344444443 47999999999999885
No 224
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.57 E-value=5.5e-14 Score=123.59 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=94.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-CeEEEEE
Q 011836 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 128 (476)
Q Consensus 50 ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 128 (476)
++|++|+|||||+++|....... .....+.|.......+... ...+.|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999995321110 1112344544444444443 6799999
Q ss_pred eCCCCcChH-------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 129 DAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 129 DtPGh~~~~-------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
||||+.++. ..+...++.+|++++|+|+..... ......+......+.| +++++||+|+...+
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 999987764 344456789999999999998742 1222235556667787 89999999994332
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
........ .... ... ....+++++|++++.|+.++
T Consensus 121 --~~~~~~~~-~~~~-~~~---~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 121 --EEEELLEL-RLLI-LLL---LLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred --hHHHHHHH-HHhh-ccc---ccCCceEEEeeeccCCHHHH
Confidence 11111110 0111 111 13568999999999999874
No 225
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=2.8e-14 Score=128.44 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=93.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVD-DRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~-~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
++..+|+++|.+|+|||||+++++. +.+. ... ....+.........+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~~~~~---------------------------~~T~~~~~~~~~~~~~~~ 52 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAY---------------------------SPTIKPRYAVNTVEVYGQ 52 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCCcccC---------------------------CCccCcceEEEEEEECCe
Confidence 4578999999999999999999852 2221 000 000111111111122222
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCCCc
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~ 200 (476)
...+.++|++|...|.......+..+|++|+|+|+.+... |+ ...+.+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 124 (169)
T cd01892 53 EKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQQ- 124 (169)
T ss_pred EEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEcccccccc-
Confidence 3578899999999987777777899999999999977421 11 11122222211 2567 89999999984221
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+ . ...+...+.+.+++. .++++||++|.|+.+++
T Consensus 125 -~-~---~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 125 -Q-R---YEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELF 158 (169)
T ss_pred -c-c---cccCHHHHHHHcCCC-----CCEEEEeccCccHHHHH
Confidence 0 0 011222334444432 45899999999999853
No 226
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=1.7e-14 Score=132.15 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=94.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|..++|||||+++|+. +.+... .....|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE--DEFSES---------------------------TKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCC---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 3799999999999999999952 221100 00112222222222232334578
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC-ch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN-WS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~-~~ 201 (476)
.++||||+.+|...+...+..+|++|+|+|+.+... |. ....++..+..+ ..| ++++.||.|+.... .+
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKVVD 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCC
Confidence 899999999998888888899999999999987532 21 222233333322 355 89999999984221 01
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. .....+....+ ++++++||++|.|+.+++.
T Consensus 125 ~-------~~~~~~~~~~~------~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 125 S-------NIAKSFCDSLN------IPFFETSAKQSINVEEAFI 155 (188)
T ss_pred H-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1 11122233333 4799999999999998644
No 227
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=1.7e-14 Score=134.56 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++++|||||+++|+.. .+... . ....+.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~--~~~~~------------------------~---~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------------------H---DLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCCCC------------------------C---CCCccceEEEEEEEECCEEEE
Confidence 479999999999999999998531 11100 0 001122222222222223356
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+..|...+...++.+|++|+|+|+..... |+ ...+.+..+.. ..+| ++++.||+|+....
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~~---~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-- 127 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDLAHRR-- 127 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccCcccc--
Confidence 8899999999998888888889999999999987532 11 11222222222 2466 89999999984311
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. ...++...+++..+ ++++++||+++.|+.+++
T Consensus 128 ~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 128 A----VSTEEGEQFAKEHG------LIFMEASAKTAQNVEEAF 160 (210)
T ss_pred C----CCHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 0 01122333444443 479999999999999863
No 228
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=1.6e-14 Score=147.67 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=91.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-e
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 123 (476)
.+.|+++|.+|+|||||+|+|+...-. + ....+.|.+.....+.+.+ .
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------------------v------~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------------------A------ADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------------------e------ccCCCCCcCCceEEEEeCCCC
Confidence 368999999999999999999531100 0 0123456665555555555 3
Q ss_pred EEEEEeCCCCcCh--------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 124 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~~--------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.|+||||..+. +..++..+..+|++|+|+|+++..+.... ..+.+.+..+...++| +++|+||+|+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l---~~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI---EAVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH---HHHHHHHHHhccCCCC-EEEEEEcccC
Confidence 8899999997332 22344556889999999999876421000 0012223333334577 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... ....+ . . ...++ ..++++||++|.|+.++.
T Consensus 322 ~~~--~~~~~----~---~--~~~~~-----~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 322 LDD--FEPRI----D---R--DEENK-----PIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred CCc--hhHHH----H---H--HhcCC-----CceEEEeCCCCCCHHHHH
Confidence 421 11111 0 0 11222 125889999999999853
No 229
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.56 E-value=4.1e-14 Score=129.40 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=94.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee-EEEEe---C
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFET---E 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~---~ 121 (476)
++|+++|.+|+|||||+++|+. +.... + ...|+...+ ..+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~--~~~~~-----------------------------~--~~~t~~~~~~~~i~~~~~~ 47 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ--GKFPE-----------------------------E--YVPTVFENYVTNIQGPNGK 47 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh--CcCCC-----------------------------C--CCCeeeeeeEEEEEecCCc
Confidence 4799999999999999999953 21110 0 001111111 11222 2
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHH--HcCCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAK--TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~--~~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+++|.......+..+|++|+|+|+.+... |+ .... ++.... ..++| +|+|.||.|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 120 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhC
Confidence 3578999999999998877777889999999999987531 11 1111 122222 13577 8999999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. ..+ .-...+...+....+. .+++++||++|.|+.+++.
T Consensus 121 ~~-~~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 121 KN-LDR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred cc-ccC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 10 000 0012233344444443 2789999999999998643
No 230
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.56 E-value=3.8e-14 Score=126.46 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=92.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--eE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|.+++|||||+.+++ .+.+.. +....+..+.....+...+ ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~--~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT--DNEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKVR 50 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh--cCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 68999999999999999884 222211 0011122222222333333 57
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+.+|...+......+|++++|+|..+... |+ .....+..+... ++| ++++.||+|+....
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~-- 121 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKR-- 121 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--
Confidence 8899999999998887788899999999999887532 22 122222222222 456 89999999984221
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+ . ..++...+.+.. ..+++++||++|.|+.++
T Consensus 122 ~--v--~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 122 Q--V--GDEQGNKLAKEY------GMDFFETSACTNSNIKES 153 (161)
T ss_pred C--C--CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 0 0 012222233333 247999999999999985
No 231
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.56 E-value=3.2e-14 Score=135.72 Aligned_cols=146 Identities=17% Similarity=0.276 Sum_probs=91.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE-EeeeEEEEe--CCe
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFET--ETT 123 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~--~~~ 123 (476)
+|+++|..|+|||||+++++. |.+... .-.|+ +.....+.. ..+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~--~~f~~~-------------------------------y~pTi~d~~~k~~~i~~~~~ 48 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLG--GRFEEQ-------------------------------YTPTIEDFHRKLYSIRGEVY 48 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCChhHhEEEEEEECCEEE
Confidence 699999999999999999952 222110 00011 111112222 346
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------------cCCceEEEEEe
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LGVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------------~~ip~~ivviN 191 (476)
.+.|+||||+.+|.......+..+|++|+|+|.++... |+ .....+..+.. .++| +|+++|
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgN 121 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVKIP-MVICGN 121 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEEE
Confidence 78999999999997766667789999999999987532 22 11222222211 2566 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+|+... .+. ..+++..++... ..+.++++||++|.|+.++
T Consensus 122 K~Dl~~~--~~v----~~~ei~~~~~~~-----~~~~~~evSAktg~gI~el 162 (247)
T cd04143 122 KADRDFP--REV----QRDEVEQLVGGD-----ENCAYFEVSAKKNSNLDEM 162 (247)
T ss_pred Cccchhc--ccc----CHHHHHHHHHhc-----CCCEEEEEeCCCCCCHHHH
Confidence 9998421 111 112333333221 1357999999999999986
No 232
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=1.3e-13 Score=126.78 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=95.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee---EEEEeC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHFETE 121 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~---~~~~~~ 121 (476)
..+|+++|..++|||||+.+++. |.+... ...|+...+ ..++..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~ 49 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT--NAFPKE-------------------------------YIPTVFDNYSAQTAVDGR 49 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh--CCCCcC-------------------------------CCCceEeeeEEEEEECCE
Confidence 47899999999999999999852 322110 112222111 112223
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+++|........+.+|++|+|+|.++... |+ .... ....+.. -++| +++|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 4678999999999998877778899999999999987532 22 1111 1121221 3577 8999999998432
Q ss_pred CchHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
....+.+.+ ..++...+.++.+ .++++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f 169 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVF 169 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHH
Confidence 100001110 0122333444433 2479999999999999863
No 233
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=3.5e-14 Score=132.56 Aligned_cols=152 Identities=17% Similarity=0.214 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe---C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---E 121 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~ 121 (476)
..+|+++|.+|+|||||+++|+. +.... .....+..+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~--~~~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE--GRFAE-----------------------------VSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCceeceEEEEEEEEECCCC
Confidence 37899999999999999999953 21110 00111222222222322 2
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-c--CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~--~ip~~ivviNK~D~~~~ 198 (476)
...+.++||||+..|.......++.+|++|+|+|.++... |+ ...+.+..+.. . ..+.++++.||+|+...
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 3578999999999998888788899999999999987532 21 12222332222 1 22337889999998431
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. . ...++...+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~--~----v~~~~~~~~~~~~~------~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 R--Q----VTREEAEKLAKDLG------MKYIETSARTGDNVEEAFE 159 (211)
T ss_pred c--c----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHHH
Confidence 1 0 11122233344433 4799999999999998644
No 234
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.55 E-value=2.6e-14 Score=127.88 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=88.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+.+++. +..... ..+. .+ +.......+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~~------------------------~~~t---~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIGE------------------------YDPN---LE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Cccccc------------------------cCCC---hH-HhceEEEEECCEEEEEE
Confidence 489999999999999999863 211100 0000 00 00011112222335688
Q ss_pred EEeCCCCcC-hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCCCCc
Q 011836 127 ILDAPGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 127 liDtPGh~~-~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~~~~ 200 (476)
|+||||+.. +...+...++.+|++|+|+|+.+... |+ .....+..+.. .++| +++|+||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~- 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYR- 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC-
Confidence 999999985 34456677889999999999987632 11 12222222222 2577 89999999983211
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCc-ccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~ 243 (476)
.. ..++...+.+..+ .+++++||++|. |+.++
T Consensus 123 ---~v--~~~~~~~~~~~~~------~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 123 ---QV--STEEGEKLASELG------CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred ---cc--CHHHHHHHHHHcC------CEEEEeCCCCCchhHHHH
Confidence 00 0122223333333 479999999995 89885
No 235
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=8.8e-14 Score=127.59 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee---eEEEEeCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFETET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~~~ 122 (476)
++|+++|..|+|||||+.+++. +..... ...|+... ........
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~~-------------------------------~~~t~~~~~~~~i~~~~~~ 47 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQV-------------------------------YEPTVFENYVHDIFVDGLH 47 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCc-------------------------------cCCcceeeeEEEEEECCEE
Confidence 4799999999999999999852 221110 00111111 11122233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+..|........+.+|++|+|+|.++... |+ ... ..+..+.. .+.| +++|.||+|+....
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~ 120 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccCh
Confidence 678999999999987666666789999999999887532 11 111 12333332 2567 99999999994321
Q ss_pred chHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
........ ..++...+.+..+ .++++++||++|.|+.+++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHH
Confidence 00000000 0112223333332 3579999999999999863
No 236
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=2.1e-14 Score=129.71 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++++++|..++|||||+.+++. +.... +....+.........+......+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~--~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT--NGYPT----------------------------EYVPTAFDNFSVVVLVDGKPVRL 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC----------------------------CCCCceeeeeeEEEEECCEEEEE
Confidence 4789999999999999988853 21110 00011111111112222234678
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCchHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.|+||||+.+|.......++.+|++|+|+|..+... |+ ......+..+.. .++| ++++.||+|+....-...
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~ 124 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLI 124 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHH
Confidence 899999999988777677889999999999987531 11 111122333332 2566 899999999842110000
Q ss_pred ------HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 204 ------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ------~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
...-..++...+.+..+. .+++++||++|.|+.+++
T Consensus 125 ~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 125 QLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVF 166 (173)
T ss_pred HHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHH
Confidence 000011223334444432 379999999999999853
No 237
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.54 E-value=6.9e-14 Score=126.11 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=89.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-CeEEEEE
Q 011836 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 128 (476)
Q Consensus 50 ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 128 (476)
++|++|+|||||+++|....-. .....+.|+......+... +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-------------------------------VANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-------------------------------ccCCCceeecCcceEEEcCCCCeEEEE
Confidence 5899999999999999532100 0112345555555556666 8899999
Q ss_pred eCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCcc---ccccCCCCchHHHHHHHH----------HcCCceEEE
Q 011836 129 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEF---ETGFEKGGQTREHVMLAK----------TLGVTKLLL 188 (476)
Q Consensus 129 DtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~---e~~~~~~~qt~e~l~~~~----------~~~ip~~iv 188 (476)
||||+.+ +...+...+..+|++++|+|+..... ...+ .....+...+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 9999733 23345566788999999999987520 0000 01111222222 13677 889
Q ss_pred EEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
++||+|+.... ...+.. ....... ...+++++|++++.|+.++
T Consensus 126 v~NK~Dl~~~~----~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 126 VLNKIDLDDAE----ELEEEL--VRELALE------EGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred EEEchhcCchh----HHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHH
Confidence 99999984321 111111 1111111 2457999999999999885
No 238
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.9e-13 Score=121.75 Aligned_cols=148 Identities=21% Similarity=0.235 Sum_probs=93.4
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|++|+|||||++.|++.... . ..+...+.|...... ... ..+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~--~~~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGKTQLINFF--NVN-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-e----------------------------eecCCCCcceeEEEE--Ecc-CeEEE
Confidence 789999999999999999521110 0 001122333333222 222 38999
Q ss_pred EeCCCCcCh----------HHHHHHhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 128 LDAPGHKSY----------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 128 iDtPGh~~~----------~~~~~~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
+||||+... ...+...+ ...+++++++|+..... ....+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997553 22222222 35688999999987632 3445566777777888 889999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.. ..........+...++... ...+++|+|++++.|+.++
T Consensus 122 ~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 122 KLK----KSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred cCC----hHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHH
Confidence 832 2333344445555554211 2458999999999998874
No 239
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.53 E-value=1.3e-13 Score=111.07 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.7
Q ss_pred ccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011836 363 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
+.+|+|++.+++... +.+|..||++.+|+++..+.|+|..+ ..+.+|++|+.+.|+|+|.+|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP-------------PGKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC-------------CCCcEeCCCCEEEEEEEECCcEE
Confidence 589999999965322 36899999999999999999998865 12567999999999999999999
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEEEEc
Q 011836 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 440 ~~~~~~~~~lgrfilr~~~~tvg~G~V~~~ 469 (476)
++++ |||+||++++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 8984 89999999999999999874
No 240
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.52 E-value=8.3e-14 Score=148.24 Aligned_cols=140 Identities=21% Similarity=0.220 Sum_probs=97.2
Q ss_pred ecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEEEeCC
Q 011836 52 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 131 (476)
Q Consensus 52 G~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDtP 131 (476)
|.+|+|||||+|+|....- .....+|+|++.....++.++.+++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8899999999999942110 111246889988887888888999999999
Q ss_pred CCcChHHH-----HHH---hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 132 GHKSYVPN-----MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 132 Gh~~~~~~-----~~~---~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
|+.+|... +.+ ....+|++++|+|+... .+..+....+...++| +++++||+|+.+..
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 99887432 111 12478999999999874 2334444556667888 89999999983211
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... ...+.+.+.+| ++++++||++|.|++++.+
T Consensus 116 ~i~---~d~~~L~~~lg------~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GIR---IDEEKLEERLG------VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CCh---hhHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 111 11222333333 5799999999999998644
No 241
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=5.1e-14 Score=127.48 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=96.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee---eEEEEeCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFETET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~~~ 122 (476)
++|+++|+.++|||+|+.+++ .|.+... ...|+... ...++...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~--~~~f~~~-------------------------------~~~Ti~~~~~~~~~~~~~~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT--SNKFPTD-------------------------------YIPTVFDNFSANVSVDGNT 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh--cCCCCCC-------------------------------CCCcceeeeEEEEEECCEE
Confidence 589999999999999999985 2322210 01122111 11222234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
.++.|+||+|+++|...+...++.+|++|||+|.++... |+ .. ..++..+.. -++| +|+|.||+|+....
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccCh
Confidence 678999999999998888888899999999999987532 22 11 223333332 2566 99999999983210
Q ss_pred chH-H---HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSK-E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~-~---~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... . ...-..++...+.+..+. .+++.+||++|.|+.+++
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 165 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHH
Confidence 000 0 000112333344444432 269999999999999863
No 242
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=1.4e-13 Score=124.27 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|+.++|||||+.+|+. +...... .+ ..+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~--~~~~~~~------------------------~~---t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK--DQFPEVY------------------------VP---TVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc--CCCCCCC------------------------CC---ccccce-EEEEEECCEEEEE
Confidence 5799999999999999999853 2111000 00 000001 1111222234578
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHH-HHHHHH--cCCceEEEEEeeccCCCCCchH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKT--LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~-l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++||||+.+|.......+..+|++++|+|.+.... |+ ...+. +..+.. .++| +++++||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTR 124 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhh
Confidence 999999999987766667789999999999986421 11 11111 122222 2677 89999999985332111
Q ss_pred HHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.... ...+...+.+..+ ..+++++||++|.|+.++
T Consensus 125 ~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l 166 (175)
T cd01870 125 RELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREV 166 (175)
T ss_pred hhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHH
Confidence 11000 0122233333333 247999999999999985
No 243
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=2.7e-13 Score=125.76 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=82.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE--eCCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~ 123 (476)
.+|+++|++|+|||||+.+|... .... ....++.+.....+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~--~~~~------------------------------t~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG--KYRS------------------------------TVTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------------ccCcEeecceEEEeecCCCCc
Confidence 37899999999999999999532 1100 000011111111111 2357
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhc-CEEEEEEECCCCccccccCCCCchHHHHHHH----HH--cCCceEEEEEeeccCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~-D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~----~~--~~ip~~ivviNK~D~~ 196 (476)
.+.++|+|||.+|...+...++.+ +++|+|+|+..... .+ ..+.+.+..+ .. -++| +++++||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999998888888888 99999999987520 00 1233333221 11 2677 89999999996
Q ss_pred CCCchHHHHHHHHHHHHHHH
Q 011836 197 TVNWSKERYDEIESKMTPFL 216 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l 216 (476)
.+...+...+.+.+++..+.
T Consensus 123 ~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 123 TAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 55433333334444444433
No 244
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.51 E-value=1.3e-13 Score=109.71 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=73.3
Q ss_pred cccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEE-cceEEe
Q 011836 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICT 440 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~-~~pi~~ 440 (476)
+++.|+|++.|++. ..++..||++.+|+++.+++|+|..+.+ +++++|+.+.|+|+| .+|+++
T Consensus 2 ~~~~f~A~i~il~~--~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~ 65 (87)
T cd03708 2 ACWEFEAEILVLHH--PTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYL 65 (87)
T ss_pred ceeEEEEEEEEEcC--CCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEE
Confidence 47899999999542 3789999999999999999999997743 459999999999995 799988
Q ss_pred eeccCccccceEEEEeCCcEEEEEEEEEc
Q 011836 441 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 441 ~~~~~~~~lgrfilr~~~~tvg~G~V~~~ 469 (476)
++ +|||+||+ |+|+|+|+|+++
T Consensus 66 e~------~grf~lr~-g~tva~G~I~~~ 87 (87)
T cd03708 66 RE------GQRLIFRE-GRTKGVGEVTKV 87 (87)
T ss_pred cc------CCeEEEEC-CCcEEEEEEEEC
Confidence 87 69999955 599999999874
No 245
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=3.7e-13 Score=118.30 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=108.9
Q ss_pred chhhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE
Q 011836 32 AESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti 111 (476)
+.+....--...+..+++++|..++|||+|+.+++|..- + +..+.||
T Consensus 9 ~~~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~f--d-------------------------------~~YqATI 55 (221)
T KOG0094|consen 9 ACQTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKF--D-------------------------------NTYQATI 55 (221)
T ss_pred HHHhccccCccceEEEEEEEccCccchHHHHHHHHHhhh--c-------------------------------cccccee
Confidence 333333344455568999999999999999999976421 1 1223444
Q ss_pred EeeeE--E--EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-C--c
Q 011836 112 EVGRA--H--FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-V--T 184 (476)
Q Consensus 112 ~~~~~--~--~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~-i--p 184 (476)
-..+. . ++.....+.+|||+|+++|....-++++.+.+||+|.|..+--. | .+|...+.-+...+ - .
T Consensus 56 GiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~S---f---e~t~kWi~dv~~e~gs~~v 129 (221)
T KOG0094|consen 56 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNS---F---ENTSKWIEDVRRERGSDDV 129 (221)
T ss_pred eeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccch---H---HHHHHHHHHHHhccCCCce
Confidence 44332 2 33345688999999999999999999999999999999887532 3 26666665555543 2 2
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 185 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
-+++|.||.|| .+ +..+. .++=....++++ +.++.+||+.|.|+..+
T Consensus 130 iI~LVGnKtDL--~d--krqvs--~eEg~~kAkel~------a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 130 IIFLVGNKTDL--SD--KRQVS--IEEGERKAKELN------AEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEcccccc--cc--hhhhh--HHHHHHHHHHhC------cEEEEecccCCCCHHHH
Confidence 36677899999 43 22221 122223344543 57999999999999975
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.50 E-value=5.5e-13 Score=121.40 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee---EEE
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHF 118 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~---~~~ 118 (476)
++...+|+++|..++|||||+.+++. +..... ...|+...+ ..+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~--~~f~~~-------------------------------~~pT~~~~~~~~~~~ 48 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAK--DCFPEN-------------------------------YVPTVFENYTASFEI 48 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHh--CCCCCc-------------------------------cCCceeeeeEEEEEE
Confidence 34567999999999999999999852 222110 111221111 122
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDD 195 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~ 195 (476)
......+.|+||+|.+.|.......++.+|++|||+|..+... |+ .. ...+..+.. -+.| +|+|.||+|+
T Consensus 49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL 121 (182)
T cd04172 49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDL 121 (182)
T ss_pred CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhh
Confidence 2234678999999999998877778899999999999887532 21 11 122222322 2466 8999999998
Q ss_pred CCCCchHH------H-HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcc-cccc
Q 011836 196 HTVNWSKE------R-YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTR 243 (476)
Q Consensus 196 ~~~~~~~~------~-~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~-i~~~ 243 (476)
.... ... + ..-..++...+.++++. ++++.+||++|.| +.++
T Consensus 122 ~~~~-~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~ 171 (182)
T cd04172 122 RTDL-TTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDI 171 (182)
T ss_pred hcCh-hhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHH
Confidence 3210 000 0 00112344455555542 3799999999998 9885
No 247
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=2.8e-13 Score=125.09 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=91.8
Q ss_pred EecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEE--eeeEEEEe--CCeEEE
Q 011836 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE--VGRAHFET--ETTRFT 126 (476)
Q Consensus 51 vG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~--~~~~~~~~--~~~~~~ 126 (476)
+|..++|||||+.++++ +.+.. ....|+. .....+.. ....+.
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~-------------------------------~~~~Tig~~~~~~~~~~~~~~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK-------------------------------KYVATLGVEVHPLVFHTNRGPIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC-------------------------------CCCCceeEEEEEEEEEECCEEEEEE
Confidence 69999999999999852 22111 1112322 22222332 356899
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCchHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
|+||||+.+|...+...++.+|++|+|+|+..... |. .....+..+.. -++| +++|.||+|+.......
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~-- 118 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA-- 118 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH--
Confidence 99999999998888888999999999999998642 11 12233333333 3577 89999999983221111
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.+ .+.+.. .++++++||++|.|+.+++.
T Consensus 119 -----~~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 119 -----KSI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred -----HHH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 111 222322 35899999999999998644
No 248
>PRK09866 hypothetical protein; Provisional
Probab=99.49 E-value=1e-12 Score=135.85 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=77.4
Q ss_pred CeEEEEEeCCCCcC-----hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeecc
Q 011836 122 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 194 (476)
Q Consensus 122 ~~~~~liDtPGh~~-----~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D 194 (476)
..++.|+||||... +.+.|...+..+|++++|||+..+.. ...++.+..+...+ .| +++++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 47899999999532 45567778999999999999987642 34566667777777 37 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+... ..+..+.+...+...+...++. ...++|+||++|.|+..+.
T Consensus 301 l~dr--eeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 301 QQDR--NSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred CCCc--ccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHH
Confidence 8421 1222344455544444433332 3479999999999998853
No 249
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.49 E-value=2.8e-13 Score=108.46 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=74.7
Q ss_pred ccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011836 363 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
+..|+|++.+++... ..+++.||.+.+|+++..+.|++..+. ++++|++|+.+.|+|+|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 689999999976432 268999999999999999999998653 4567999999999999999999
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEE
Q 011836 440 TEKFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 440 ~~~~~~~~~lgrfilr~~~~tvg~G~V 466 (476)
++.+ |||+||++++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 8884 89999999999999986
No 250
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=3e-13 Score=128.04 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=58.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|......+ ....+.|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------------------~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------------------AAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCCccccceEEEEEECCeEEE
Confidence 68999999999999999995211000 00123444444445567789999
Q ss_pred EEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCC
Q 011836 127 ILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 127 liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g 159 (476)
++||||+.+ +...++..++.+|++++|+|+.+.
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999743 334567778899999999998764
No 251
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.7e-13 Score=119.64 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=106.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|.++|..|+|||-|+-|+ ..+...+. ...-+-++.....++.+ .
T Consensus 9 lFKiiliGds~VGKtCL~~Rf--~~~~f~e~-----------------------------~~sTIGVDf~~rt~e~~gk~ 57 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRF--KDDTFTES-----------------------------YISTIGVDFKIRTVELDGKT 57 (205)
T ss_pred EEEEEEECCCCcChhhhhhhh--ccCCcchh-----------------------------hcceeeeEEEEEEeeecceE
Confidence 578999999999999999877 44443332 12234444444555554 4
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.++.++||+|+++|...+.++.+.|+++|+|.|.+... +|+..+++...+.....-++| .++|.||.|+... ..
T Consensus 58 iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~--~~ 131 (205)
T KOG0084|consen 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK--RV 131 (205)
T ss_pred EEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--ee
Confidence 57899999999999999999999999999999999853 355444555544444445677 6789999998321 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
- ..++...+...++.. .++++||+.+.|+++.
T Consensus 132 v----~~~~a~~fa~~~~~~-----~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 132 V----STEEAQEFADELGIP-----IFLETSAKDSTNVEDA 163 (205)
T ss_pred c----CHHHHHHHHHhcCCc-----ceeecccCCccCHHHH
Confidence 1 112223455555432 3999999999999885
No 252
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.48 E-value=3.3e-13 Score=140.13 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=103.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|+||+|||||+|+|....- .-..-.|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-------------------------------~VgNwpGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-------------------------------KVGNWPGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-------------------------------eecCCCCeeEEEEEEEEEecCce
Confidence 46699999999999999999942211 11235899999999999999999
Q ss_pred EEEEeCCCCcChH------HHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 125 FTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
+.++|.||--.+. +-+.+.+ ..+|++|-|+||..- ......-.++..+|+| +|+++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------eRnLyltlQLlE~g~p-~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------ERNLYLTLQLLELGIP-MILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------HHHHHHHHHHHHcCCC-eEEEeccHhhH
Confidence 9999999943321 1111222 368999999999863 2344444667778999 99999999972
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. +. -+.-...++-+.+| +|++|+||++|.|++++.
T Consensus 122 ~----~~---Gi~ID~~~L~~~LG------vPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 122 K----KR---GIRIDIEKLSKLLG------VPVVPTVAKRGEGLEELK 156 (653)
T ss_pred H----hc---CCcccHHHHHHHhC------CCEEEEEeecCCCHHHHH
Confidence 1 11 11122222333343 589999999999988853
No 253
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=7.9e-13 Score=124.53 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee---EEEE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHFE 119 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~---~~~~ 119 (476)
....+|+++|..++|||+|+.+++. +.+... ...|+...+ ..+.
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~~-------------------------------y~pTi~~~~~~~i~~~ 57 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK--DCYPET-------------------------------YVPTVFENYTAGLETE 57 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc--CCCCCC-------------------------------cCCceeeeeEEEEEEC
Confidence 4468999999999999999999842 222110 001111111 1222
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~ 197 (476)
.....+.|+||||++.|.......++.+|++|||+|..+... |+ .....++..+.. -++| +|+|.||+|+..
T Consensus 58 ~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 58 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 234678999999999998877778899999999999987532 21 001122233332 2566 899999999842
Q ss_pred CCchH------H-HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCc-ccccccc
Q 011836 198 VNWSK------E-RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 245 (476)
Q Consensus 198 ~~~~~------~-~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~~~ 245 (476)
.. .. . ...-..++...+.+++|+. .++.+||++|. |+.+++.
T Consensus 132 ~~-~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~-----~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 132 DL-STLMELSNQKQAPISYEQGCALAKQLGAE-----VYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred cc-chhhhhccccCCcCCHHHHHHHHHHcCCC-----EEEEccCCcCCcCHHHHHH
Confidence 10 00 0 0001123445566666532 68999999998 7988643
No 254
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.47 E-value=8.5e-13 Score=112.67 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=106.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|.++|..||||||++.+|+... . .....|.-....+.+.+.+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~---~-------------------------------~~i~pt~gf~Iktl~~~~~~ 61 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED---T-------------------------------DTISPTLGFQIKTLEYKGYT 61 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC---c-------------------------------cccCCccceeeEEEEecceE
Confidence 7899999999999999999995221 0 01223444455567788999
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEeeccCCCCCc
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~~~~~ 200 (476)
++++|..|+..+..-+-.+....|+.|+|||..+... + .++..++..+ +..|.| ++|+.||.|++++ .
T Consensus 62 L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~---~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~-l 133 (185)
T KOG0073|consen 62 LNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---M---QECKQELTELLVEERLAGAP-LLVLANKQDLPGA-L 133 (185)
T ss_pred EEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---H---HHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc-c
Confidence 9999999999999999999999999999999977531 1 1233333222 234677 8999999999643 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.+.+..+ -.+..++++. .++++-+||.+|+++.+-
T Consensus 134 ~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 134 SLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred CHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHHH
Confidence 33333222 2344444544 568999999999988764
No 255
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=3.8e-13 Score=126.46 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=89.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+++++ .+..... ..+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~--~~~~~~~--------------------------~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT--SGEYDDH--------------------------AYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh--cCCcCcc--------------------------CcCCCccccceEEEEEECCEEEEE
Confidence 379999999999999999984 2222100 000000101111112222345779
Q ss_pred EEEeCCCCcChHHHHHHhhh-hcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCc
Q 011836 126 TILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~-~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~ 200 (476)
.|+||||+..+... ..+. .+|++++|+|+.+... |. ...+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~- 122 (221)
T cd04148 53 VVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR- 122 (221)
T ss_pred EEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc-
Confidence 99999999844333 2345 8999999999987532 21 22333333333 3567 89999999984321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+-. .++...+.... +++++++||++|.|+.++++
T Consensus 123 -~v~----~~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 123 -EVS----VQEGRACAVVF------DCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred -eec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 100 11112223332 34799999999999998643
No 256
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4e-13 Score=120.27 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=104.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
-...+|.++|.+++|||.++-++. .+...... ..-+-|+.....++.+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~--d~~f~~~~-----------------------------~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFS--DDSFNTSF-----------------------------ISTIGIDFKIKTIELDG 58 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhh--hccCcCCc-----------------------------cceEEEEEEEEEEEeCC
Confidence 346899999999999999998873 22221110 1112233333333443
Q ss_pred -CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 -~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
...+.+|||.|+++|...+-++++.|++++||+|...... |+....+.+.+..-..-+++ .++|.||+|+..
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~S---feni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~--- 131 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKS---FENIRNWIKNIDEHASDDVV-KILVGNKCDLEE--- 131 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHH---HHHHHHHHHHHHhhCCCCCc-EEEeeccccccc---
Confidence 4578999999999999999999999999999999887532 33222344444444445787 789999999832
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.+-..+.-.++...+| ++|+.+||++|.|+.+.
T Consensus 132 ---~R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 132 ---KRQVSKERGEALAREYG------IKFFETSAKTNFNIEEA 165 (207)
T ss_pred ---cccccHHHHHHHHHHhC------CeEEEccccCCCCHHHH
Confidence 11122333444566665 47999999999999985
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=3.9e-13 Score=113.02 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=73.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|+..... ......+.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------------------------------KVSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------------------------------EESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------------------------------cccccccceeeeeeeeeeeceeeEE
Confidence 5899999999999999999631100 0011234444444455677889999
Q ss_pred EEeCCCCcC---------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 127 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 127 liDtPGh~~---------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
|+||||..+ ........+..+|++++|+|+..... .+..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-------~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-------EDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-------HHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999643 23345566689999999999877321 23445555565 5666 9999998
No 258
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.46 E-value=9.8e-13 Score=119.39 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee---EEEEeCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHFETET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~---~~~~~~~ 122 (476)
.+|+++|..++|||||+.+++. +..... .-.|+...+ ..+....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYPET-------------------------------YVPTVFENYTASFEIDEQR 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCCCC-------------------------------cCCceEEEEEEEEEECCEE
Confidence 5799999999999999999852 221110 011111111 1122234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||++.|.......++.+|++|+|+|..+... |+ .. ..++..+... ++| +|+|.||+|+....
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~ 121 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDL 121 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcCh
Confidence 678999999999998777777889999999999987532 21 11 2222333332 466 89999999984210
Q ss_pred chH-HHH------HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcc-cccc
Q 011836 200 WSK-ERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTR 243 (476)
Q Consensus 200 ~~~-~~~------~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~-i~~~ 243 (476)
.. ..+ .-..++...+.++.+. .+++.+||++|.| +.++
T Consensus 122 -~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 122 -STLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDI 167 (178)
T ss_pred -hHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHH
Confidence 00 000 0012234445555542 2799999999995 9885
No 259
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.45 E-value=6.5e-13 Score=115.33 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=90.3
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE-EeeeEEEE--eCCeEEE
Q 011836 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFE--TETTRFT 126 (476)
Q Consensus 50 ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti-~~~~~~~~--~~~~~~~ 126 (476)
++|++++|||||+++|....... .....|. +.....+. ..+..+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP--------------------------------EEYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC--------------------------------cccccchhheeeEEEEECCEEEEEE
Confidence 58999999999999996322110 0011111 11222222 2367899
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-----HHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-----~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++|+||+.++.......+..+|++++|+|+..+.. ..... ........+.| +++++||+|+....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~-- 118 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES-------FENVKEWLLLILINKEGENIP-IILVGNKIDLPEER-- 118 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH-------HHHHHHHHHHHHHhhccCCCc-EEEEEecccccccc--
Confidence 99999999998888888899999999999998642 11111 22233345666 89999999985332
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...... ........ ...+++++|+.++.|+.++
T Consensus 119 ~~~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 119 VVSEEE----LAEQLAKE-----LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred chHHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHH
Confidence 111110 11111111 2468999999999998874
No 260
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.44 E-value=3.9e-13 Score=119.67 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=96.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+.+|.. +..... .....|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPEN---------------------------YIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTSS---------------------------SETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccccc---------------------------cccccccccccccccccccccccc
Confidence 589999999999999999852 221110 001112222222222333446799
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-C-CceEEEEEeeccCCCCCchHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G-VTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~-ip~~ivviNK~D~~~~~~~~~~ 204 (476)
|+|+||+.+|.......+..+|++|++.|.++... |+ .....+..+... . .++++|+.||.|+... .+
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~---~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~--~~-- 121 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEES---FE---NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE--RE-- 121 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHH---HH---THHHHHHHHHHHSTTTSEEEEEEETTTGGGG--SS--
T ss_pred ccccccccccccccccccccccccccccccccccc---cc---ccccccccccccccccccceeeecccccccc--cc--
Confidence 99999999998777777889999999999987532 22 233333333332 2 2349999999998431 11
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
-..++...+.+.++ .+++.+|++++.|+.++
T Consensus 122 --v~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 122 --VSVEEAQEFAKELG------VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp --SCHHHHHHHHHHTT------SEEEEEBTTTTTTHHHH
T ss_pred --chhhHHHHHHHHhC------CEEEEEECCCCCCHHHH
Confidence 11133444555554 48999999999999985
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.43 E-value=1.9e-12 Score=119.51 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=90.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+|+|+...... ......+.|.......+.+.++++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFE-----------------------------SKLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccc-----------------------------cccCCCCcccccceeeEEECCeEE
Confidence 589999999999999999997432210 011134667766666777889999
Q ss_pred EEEeCCCCcCh-------HHHHHHh----hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-C---CceEEEEE
Q 011836 126 TILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 190 (476)
Q Consensus 126 ~liDtPGh~~~-------~~~~~~~----~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~---ip~~ivvi 190 (476)
++|||||..+. ...+.+. ...+|++|+|+|+.. .. ....+.+..+... | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999996554 2223322 246899999999987 32 3445555555442 3 24688999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
|+.|....+.-++.+.+....+..+++++|
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999975443222233334466777777764
No 262
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.42 E-value=2e-12 Score=121.14 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee-EEEEe--CC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFET--ET 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~--~~ 122 (476)
.+|+++|..++|||+|+.+++. +.+... ...|+...+ ..+.. ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~~-------------------------------y~pTi~~~~~~~~~~~~~~ 48 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPGS-------------------------------YVPTVFENYTASFEIDKRR 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCc-------------------------------cCCccccceEEEEEECCEE
Confidence 5899999999999999999852 221110 001111111 12222 34
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHH--cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~--~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||+|++.|.......+..+|++|+|+|..+... |+ .....+ ..... .++| +|+|.||+|+....
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~ 121 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDL 121 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccch
Confidence 678899999999998887788899999999999987532 11 111222 12222 3567 89999999984210
Q ss_pred chHHHHHH---------HHHHHHHHHHhcCCCccCCeeEEEeecccCcc-ccccc
Q 011836 200 WSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 244 (476)
Q Consensus 200 ~~~~~~~~---------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~-i~~~~ 244 (476)
...++ ..++...+.+.+|. ++++.+||+++.| +.+++
T Consensus 122 ---~~~~~~~~~~~~pIs~e~g~~~ak~~~~-----~~y~E~SAk~~~~~V~~~F 168 (222)
T cd04173 122 ---ATLRELSKQRLIPVTHEQGTVLAKQVGA-----VSYVECSSRSSERSVRDVF 168 (222)
T ss_pred ---hhhhhhhhccCCccCHHHHHHHHHHcCC-----CEEEEcCCCcCCcCHHHHH
Confidence 11111 11233334444442 4899999999985 88863
No 263
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=5.4e-13 Score=130.83 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=102.7
Q ss_pred cccccchhhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhh
Q 011836 27 SAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106 (476)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~ 106 (476)
+.+...-.+............|+++|.+|||||||+|+|.... ..... .
T Consensus 174 e~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d------------------------------~ 222 (411)
T COG2262 174 ENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVAD------------------------------Q 222 (411)
T ss_pred HHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccc------------------------------c
Confidence 3333333333444455678999999999999999999995211 10000 0
Q ss_pred cccEEEeeeEEEEeC-CeEEEEEeCCCCcChH--------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH
Q 011836 107 KGKTVEVGRAHFETE-TTRFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~-~~~~~liDtPGh~~~~--------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
-=.|.+.....+... ++.+.+-||-|..+-+ +.++.....||..++|||++++... .+.......
T Consensus 223 LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~v 296 (411)
T COG2262 223 LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDV 296 (411)
T ss_pred ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHH
Confidence 113455555555555 5899999999965543 3334445689999999999987432 233334455
Q ss_pred HHHc---CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 178 AKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 178 ~~~~---~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+..+ .+| +|+|.||+|+... .. ... .+... ....+++||++|.|++.+.+
T Consensus 297 L~el~~~~~p-~i~v~NKiD~~~~---~~----~~~----~~~~~------~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 297 LAEIGADEIP-IILVLNKIDLLED---EE----ILA----ELERG------SPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred HHHcCCCCCC-EEEEEecccccCc---hh----hhh----hhhhc------CCCeEEEEeccCcCHHHHHH
Confidence 5554 456 8999999998322 11 111 11111 11589999999999988543
No 264
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=123.39 Aligned_cols=150 Identities=18% Similarity=0.238 Sum_probs=88.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
-|....|+++|.||||||||+++|......+-. |++ .|+........++
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKpkVa~-------------------YaF------------TTL~P~iG~v~yd 241 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-------------------YAF------------TTLRPHIGTVNYD 241 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCCcccc-------------------cce------------eeeccccceeecc
Confidence 355678999999999999999999654333221 111 1222222223333
Q ss_pred Ce-EEEEEeCCCC-----------cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCce
Q 011836 122 TT-RFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 185 (476)
Q Consensus 122 ~~-~~~liDtPGh-----------~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~ 185 (476)
++ ++++.|.||. .+|++. +..|+..++|||...+-.-.-+ .|..-.+..+.. +.-++
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrH----iER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRH----IERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHH----HHhhceEEEEEECCCcccCCHH---HHHHHHHHHHHHHhhhhccCc
Confidence 33 4999999993 235555 4567999999999976210000 111111122222 22333
Q ss_pred EEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 186 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 186 ~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+||+||+|++++ + +.. +.++.+.+. +..++|+||++++|+.++
T Consensus 315 ~liVaNKiD~~ea---e---~~~---l~~L~~~lq-----~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 315 ALIVANKIDLPEA---E---KNL---LSSLAKRLQ-----NPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred eEEEEeccCchhH---H---HHH---HHHHHHHcC-----CCcEEEeeeccccchHHH
Confidence 7789999998422 1 111 233333332 336999999999998874
No 265
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.9e-13 Score=133.69 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=110.5
Q ss_pred chhhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE
Q 011836 32 AESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti 111 (476)
++.-.+..+.-+..+.|+|+|.||+|||||+|+|....-.|.. ...|.|.
T Consensus 255 ~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS------------------------------pv~GTTR 304 (531)
T KOG1191|consen 255 HLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS------------------------------PVPGTTR 304 (531)
T ss_pred HHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC------------------------------CCCCcch
Confidence 3333344445566799999999999999999999654333222 2578999
Q ss_pred EeeeEEEEeCCeEEEEEeCCCCcC---------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC
Q 011836 112 EVGRAHFETETTRFTILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG 182 (476)
Q Consensus 112 ~~~~~~~~~~~~~~~liDtPGh~~---------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ 182 (476)
|.....++.+++.+.|+||+|..+ =+......+..+|++++||||..+.++ +.......+...+
T Consensus 305 Daiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~ 377 (531)
T KOG1191|consen 305 DAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEG 377 (531)
T ss_pred hhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhc
Confidence 999999999999999999999765 133344456799999999999887764 3333333333322
Q ss_pred -----C------ceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCee-EEEeecccCccccccccC
Q 011836 183 -----V------TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTRVDK 246 (476)
Q Consensus 183 -----i------p~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-iipiSa~~g~~i~~~~~~ 246 (476)
+ .++|++.||.|+... ++ +.......+....|- ...+ ...+|+++++|+..+...
T Consensus 378 ~g~~~~~~~~~~~~~i~~~nk~D~~s~-~~-----~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 378 VGLVVIVNKMEKQRIILVANKSDLVSK-IP-----EMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred cceEEEeccccccceEEEechhhccCc-cc-----cccCCceeccccccC---cccceEEEeeechhhhHHHHHHH
Confidence 1 357889999998322 01 111111111111111 1233 445999999999987553
No 266
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1e-12 Score=114.60 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=103.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..++.++|..++|||.|+-++. ...+... .| .-+-++.+...++.+ .
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~--~krF~~~----------------------hd-------~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT--DKRFQPV----------------------HD-------LTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh--ccCcccc----------------------cc-------ceeeeeeceeEEEEcCce
Confidence 4678999999999999997763 2211110 01 112334444444444 4
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
.+++++||.||+.|...+-++.+.+-+||||.|...... |....++.+.+++....+.. ++++.||+|+..
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~----- 125 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FNHLTSWLEDARQHSNENMV-IMLIGNKSDLEA----- 125 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HHHHHHHHHHHHHhcCCCcE-EEEEcchhhhhc-----
Confidence 578999999999999999999999999999999987643 33112333333333233444 677789999821
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.+-..++-..+.++.|+ .+..+||++++|+++.+
T Consensus 126 -rR~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 126 -RREVSKEEGEAFAREHGL------IFMETSAKTAENVEEAF 160 (216)
T ss_pred -cccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHH
Confidence 223344566667787765 68899999999999863
No 267
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.40 E-value=2.1e-12 Score=118.16 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=91.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEe-eeEEEEeCCeE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETETTR 124 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~-~~~~~~~~~~~ 124 (476)
.+|+++|..++|||||+++|.. |..... ....+.... ....+......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 50 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEE-----------------------------YHPTVFENYVTDCRVDGKPVQ 50 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc-----------------------------cCCcccceEEEEEEECCEEEE
Confidence 5899999999999999999842 221110 000000000 01111222356
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~~~ 201 (476)
+.++||||+..|.......++.+|+++++.|.+.... |. ... .++..+... .+| +|++.||+|+...+..
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVA 123 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCccc
Confidence 8899999998886544455688999999999876431 11 111 122333222 466 8999999998432111
Q ss_pred H-----HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 K-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~-----~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. .++.. .+....+.+..+. .+++.+||++|.|+.++++
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 124 KEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred ccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 1 01100 1222334444442 3799999999999998643
No 268
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.39 E-value=6.5e-12 Score=117.64 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=93.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|+.|+|||||+++++ .|...... ....|..+.........
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~--~~~~~~~~---------------------------~~t~~~~~~~~~~~~~~ 55 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHL--TGEFEKKY---------------------------IPTLGVEVHPLKFYTNC 55 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHH--hCCCCCCC---------------------------CCccceEEEEEEEEECC
Confidence 34455899999999999999998774 23221110 00112222111111233
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEeeccCCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivviNK~D~~~~ 198 (476)
....+.++||||+.+|..........+|++++|+|..+... |. .....+..+. .-++| ++++.||+|+...
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVDVKDR 128 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccCccc
Confidence 45789999999999997777667789999999999987642 11 1112222222 13566 8889999998322
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.... +...+.... .+.++++|+++|.|+.+.
T Consensus 129 ~~~~--------~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 129 QVKA--------RQITFHRKK------NLQYYDISAKSNYNFEKP 159 (215)
T ss_pred cCCH--------HHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 1111 111233333 347899999999999874
No 269
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.39 E-value=2.2e-12 Score=115.54 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=67.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE---eC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---TE 121 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~---~~ 121 (476)
...|.++|+.|||||+|+.+|.+. .... . .|.-.....+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~--~~~~--------------------------------T-~tS~e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG--KTVP--------------------------------T-VTSMENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS--S-----------------------------------B----SSEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CcCC--------------------------------e-eccccCCceEEeecCC
Confidence 367999999999999999999542 1000 0 00001111111 24
Q ss_pred CeEEEEEeCCCCcChHHHHHHh---hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--------cCCceEEEEE
Q 011836 122 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVV 190 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~---~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--------~~ip~~ivvi 190 (476)
+..+.+||+|||.+.....+.. +..+.++|+|||+..-. .+.++.+.++.. .+.++++|++
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~--------~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ--------KELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch--------hhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 5689999999999998777776 78999999999997521 222333222221 1334499999
Q ss_pred eeccCCCCC
Q 011836 191 NKMDDHTVN 199 (476)
Q Consensus 191 NK~D~~~~~ 199 (476)
||.|+..+.
T Consensus 120 NK~Dl~~A~ 128 (181)
T PF09439_consen 120 NKQDLFTAK 128 (181)
T ss_dssp E-TTSTT--
T ss_pred eCccccccC
Confidence 999997653
No 270
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.38 E-value=1.7e-12 Score=108.64 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=106.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
....+.++|..+||||||++.. .+|...+ .-+.|+......++..+.
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~i--a~g~~~e-------------------------------dmiptvGfnmrk~tkgnv 65 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVI--ARGQYLE-------------------------------DMIPTVGFNMRKVTKGNV 65 (186)
T ss_pred heeeEEEEeeccCCcceEEEEE--eeccchh-------------------------------hhcccccceeEEeccCce
Confidence 3467899999999999999977 3332111 123455556667777888
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++|.||+..|..++.++.+.+++++++|||.+..- + ...++.+..+. ..|+| ++|..||.|++++=
T Consensus 66 tiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k---~---~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 66 TIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK---L---EASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGAL 138 (186)
T ss_pred EEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc---c---hhhHHHHHHHhcchhhcCCc-EEEecccccCcccc
Confidence 99999999999999999999999999999999988531 1 23444443332 24788 89999999997662
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCc--cCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~iipiSa~~g~~i~~~ 243 (476)
++. . +..++|+.. ..++..+.||++...|++..
T Consensus 139 -~~~-------~---li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 139 -SKI-------A---LIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred -cHH-------H---HHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 221 1 222333321 23678899999999999874
No 271
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.38 E-value=2.4e-12 Score=114.56 Aligned_cols=144 Identities=18% Similarity=0.197 Sum_probs=85.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|+.++|||||+.+++. +.+... ....+-.. ...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~~----------------------------~~~~~~~~---~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQL----------------------------ESPEGGRF---KKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCCC----------------------------CCCCccce---EEEEEECCEEE
Confidence 4799999999999999998852 221110 00000000 11223333 5
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||+|...+ ...+.+|++++|+|.++... |+ .....+..+.. .++| ++++.||+|+...+
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6899999999763 23467899999999988642 22 22233333332 2456 89999999983211
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+..+. .++...+.+..+ .++++++||++|.|+.++
T Consensus 116 --~~~v~--~~~~~~~~~~~~-----~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 116 --PRVID--DARARQLCADMK-----RCSYYETCATYGLNVERV 150 (158)
T ss_pred --CcccC--HHHHHHHHHHhC-----CCcEEEEecCCCCCHHHH
Confidence 11111 112222333321 358999999999999985
No 272
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=112.37 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=102.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE----
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA---- 116 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~---- 116 (476)
++...++|.++|.+|+|||+|.+++.+.. +. .....||...+.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~k----------F~-----------------------~qykaTIgadFltKev 51 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKK----------FS-----------------------QQYKATIGADFLTKEV 51 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHH----------HH-----------------------HHhccccchhheeeEE
Confidence 34567999999999999999999996421 10 111233333222
Q ss_pred EEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEee
Q 011836 117 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNK 192 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~---~~ip~~ivviNK 192 (476)
.++.....+.++||+|+++|-..-....+.+|.++||.|.+.... |+....++..+ .++.- ..-| +||+.||
T Consensus 52 ~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNK 127 (210)
T KOG0394|consen 52 QVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FENLENWRKEFLIQASPQDPETFP-FVILGNK 127 (210)
T ss_pred EEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hccHHHHHHHHHHhcCCCCCCccc-EEEEccc
Confidence 222223457899999999998877777899999999999887542 33222333322 22221 1346 9999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+|+.+. +.+ .....+....++.- .++|++.+||+.+.|+...
T Consensus 128 iD~~~~---~~r-~VS~~~Aq~WC~s~-----gnipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 128 IDVDGG---KSR-QVSEKKAQTWCKSK-----GNIPYFETSAKEATNVDEA 169 (210)
T ss_pred ccCCCC---ccc-eeeHHHHHHHHHhc-----CCceeEEecccccccHHHH
Confidence 998431 111 12334445566654 4789999999999999885
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.37 E-value=5.8e-12 Score=116.27 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=89.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CCeE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 124 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~ 124 (476)
++|+++|.+|+|||||+|+|+... ...... ...+ ....|... ..+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~-~~~~~~-------------------~~~~------~~~~t~~~--~~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG-HEEEGA-------------------APTG------VVETTMKR--TPYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC-CCCCCc-------------------cccC------ccccccCc--eeeecCCCCC
Confidence 689999999999999999996321 000000 0000 00011111 11211 1347
Q ss_pred EEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 125 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 125 ~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
++++||||..+ |+.. .++..+|++++|.|.. .. ......+..+...+.| +++|+||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~--~~-------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR--FS-------SNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC--CC-------HHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 89999999743 3222 2356788888875432 11 3445566677777887 899999999832
Q ss_pred CCc---------hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecc--cCccccc
Q 011836 198 VNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKT 242 (476)
Q Consensus 198 ~~~---------~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~--~g~~i~~ 242 (476)
.+. .+...+++.+.+...++..|.. ..+++.+|+. .+.++..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHH
Confidence 211 1123555556666666655543 4589999998 4555554
No 274
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.37 E-value=7e-13 Score=122.45 Aligned_cols=203 Identities=13% Similarity=0.175 Sum_probs=119.2
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCC-cchHHHHHHHHHHhh-------cCccchhhhhhcCCchhhhhcccE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ-VDDRTIQKYEKEAKD-------KSRESWYMAYIMDTNEEERIKGKT 110 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~-~~~~~~~~~~~~~~~-------~g~~~~~~~~~~d~~~~e~~~g~t 110 (476)
+...+....|.++|..||||||++.+|...... -....+.++.+.+.. .-|....|..+|.........||+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 334455678899999999999999999532211 111111111111111 113445556666655555666665
Q ss_pred EEeeeEEEE-----------eCCeEEEEEeCCCCcChHHHHHH--------hhhhcCEEEEEEECCCCccccccCCCCch
Q 011836 111 VEVGRAHFE-----------TETTRFTILDAPGHKSYVPNMIS--------GASQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 111 i~~~~~~~~-----------~~~~~~~liDtPGh~~~~~~~~~--------~~~~~D~~ilVvda~~g~~e~~~~~~~qt 171 (476)
..+...... .+...+.+|||||+..-.....+ +...+-++++|||....-..+.|. ...
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNM 170 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNM 170 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHH
Confidence 554432211 13467999999997654322222 234677899999988765544454 344
Q ss_pred HHHHHHHHHcCCceEEEEEeeccCCCCCc------hHHHHHHHHHHH-----HHHHHhcCCC---ccCCeeEEEeecccC
Q 011836 172 REHVMLAKTLGVTKLLLVVNKMDDHTVNW------SKERYDEIESKM-----TPFLKASGYN---VKKDVQFLPISGLMG 237 (476)
Q Consensus 172 ~e~l~~~~~~~ip~~ivviNK~D~~~~~~------~~~~~~~~~~~l-----~~~l~~~g~~---~~~~~~iipiSa~~g 237 (476)
.....++....+| +||+.||.|+.+..+ +.+.|++..++. ..+...+.+. --..+..+.+|+.+|
T Consensus 171 lYAcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 171 LYACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 5555667777899 999999999965543 224455555431 1111111000 012568999999999
Q ss_pred ccccccc
Q 011836 238 LNMKTRV 244 (476)
Q Consensus 238 ~~i~~~~ 244 (476)
.|.++++
T Consensus 250 ~G~ddf~ 256 (366)
T KOG1532|consen 250 EGFDDFF 256 (366)
T ss_pred CcHHHHH
Confidence 9998854
No 275
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.6e-12 Score=123.35 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=61.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...-+|+++|.|++|||||+++|......+.+ ..+ .|....-..+++++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~-----------------------y~F--------TTl~~VPG~l~Y~g 109 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVAD-----------------------YPF--------TTLEPVPGMLEYKG 109 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccc-----------------------cCc--------eecccccceEeecC
Confidence 34679999999999999999999532221110 011 23333334477889
Q ss_pred eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 011836 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 123 ~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~ 160 (476)
-++.++|+||.-. --+..++.++.||.+++|+|+....
T Consensus 110 a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 110 AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 9999999999322 1355777889999999999998754
No 276
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.6e-12 Score=111.85 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=108.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+...+|+++|--+|||||++.+| ..|.+. ..-.|+...-..+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykL--k~~E~v--------------------------------ttvPTiGfnVE~v~y 58 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKL--KLGEIV--------------------------------TTVPTIGFNVETVEY 58 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEee--ccCCcc--------------------------------cCCCccccceeEEEE
Confidence 4566789999999999999999887 333211 223566666667788
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH-HHH---cCCceEEEEEeeccCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~-~~~---~~ip~~ivviNK~D~~ 196 (476)
.+.+++++|..|+.++...+..+....+++|+|||+.+... ....++.+.. +.. .+.| ++|+.||.|++
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~ 131 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDLP 131 (181)
T ss_pred cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhcc
Confidence 89999999999999999999999999999999999998642 1223333322 221 2455 88999999997
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
++= +. .++...|.-..+. .....+-+++|.+|+|+.+-
T Consensus 132 ~al-s~-------~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 132 GAL-SA-------AEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred ccC-CH-------HHHHhHhhhhccC-CCCcEEeeccccccccHHHH
Confidence 652 22 2333333332222 13567889999999998774
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=118.00 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=92.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+|+|+||+|||||+.+|......+.+ |.+ .|-.+...+|+....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-------------------YPF------------TTK~i~vGhfe~~~~ 215 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-------------------YPF------------TTKGIHVGHFERGYL 215 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC-------------------CCc------------cccceeEeeeecCCc
Confidence 4689999999999999999998432222111 111 122233456777888
Q ss_pred EEEEEeCCCCcC--------hHHHHHHhhh-hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 124 RFTILDAPGHKS--------YVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~~--------~~~~~~~~~~-~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.+.+|||||.-| .-...+.+++ ..+++|+++|++... |+....|..-.-.+-..+..| +++|+||+|
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D 291 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQISLLEEIKELFKAP-IVVVINKID 291 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 999999999543 2344555655 678999999998753 333222222111222234555 999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. .+ .+..+++... +...|. ....-+++..+.+++..
T Consensus 292 ~--~~--~e~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 292 I--AD--EEKLEEIEAS----VLEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred c--cc--hhHHHHHHHH----HHhhcc-----ccccceeeeehhhHHHH
Confidence 8 32 3444444433 333222 23556777777777653
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=5.9e-12 Score=108.65 Aligned_cols=164 Identities=22% Similarity=0.187 Sum_probs=107.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.|....|.|+|.-+|||||++.++-.... + ..| .++ .. +--.|+.....+.+.+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~-----------~---~~~--------~l~--~~--ki~~tvgLnig~i~v~ 67 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFS-----------K---AYG--------GLN--PS--KITPTVGLNIGTIEVC 67 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHH-----------h---hhc--------CCC--HH--Heecccceeecceeec
Confidence 45668899999999999999988732100 0 000 000 11 1123444555566777
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc-cccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE-FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
+..+.|||..|++.....+..+...+++++++|||.+.. |+.+- .+.+.....-...|+| +++.+||-|+.++
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~-- 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA-- 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh--
Confidence 889999999999999999989999999999999999843 32110 1223333444456899 7889999999433
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
....++...+.. ....+ ..+.++.|+||++|+|+.+-
T Consensus 142 --~~~~El~~~~~~-~e~~~---~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 --MEAAELDGVFGL-AELIP---RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred --hhHHHHHHHhhh-hhhcC---CccCccccchhhhcccHHHH
Confidence 122233222221 22222 34779999999999999884
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=3.6e-11 Score=112.06 Aligned_cols=160 Identities=17% Similarity=0.260 Sum_probs=103.0
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee-EE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AH 117 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~-~~ 117 (476)
+..+++++||.++|.+|+|||+|+|+|.+....-.. .-|++.+... ..
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-------------------------------~vg~~t~~~~~~~ 81 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVS-------------------------------KVGVGTDITTRLR 81 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceee-------------------------------ecccCCCchhhHH
Confidence 445778899999999999999999999632111000 0011111110 01
Q ss_pred EEeCCeEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC-ceEEEE
Q 011836 118 FETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLV 189 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i-p~~ivv 189 (476)
...+...++|+||||..+ |.......+...|.+++++++.+... ......+......+. .+++++
T Consensus 82 ~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~ 154 (296)
T COG3596 82 LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFV 154 (296)
T ss_pred hhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEE
Confidence 123457899999999765 77777888899999999999998753 334444455555544 559999
Q ss_pred EeeccCCCC--CchH----------HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 190 VNKMDDHTV--NWSK----------ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~D~~~~--~~~~----------~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
||..|+... +|+. +-.++-.+.+..++.. --|++..|+..++|+..+
T Consensus 155 VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 155 VTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred EehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 999998533 2321 2223333334444433 347888888888888875
No 280
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=5.1e-11 Score=109.70 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=67.0
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEeeccCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~ 197 (476)
....+.|+||+|+.++.. ...++.+|++|+|+|..+... |+ .... ++..+.. -++| +|+|.||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccc
Confidence 346889999999976432 235689999999999987531 21 1221 2223332 2566 899999999843
Q ss_pred CCchHH-------------HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~-------------~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+.... ...-..++...+.++.| ++++.+||++|.|+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 135 ADLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDV 187 (195)
T ss_pred cccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHH
Confidence 110000 00011233444555554 47999999999999985
No 281
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.8e-11 Score=101.52 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=105.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee--EE--E
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AH--F 118 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~--~~--~ 118 (476)
+-..+|+++|..|.|||-|+.++ ..|.+..+ +|.||.+.+ .+ .
T Consensus 5 kflfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev 51 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEV 51 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEE
Confidence 33578999999999999999988 45655442 355555543 23 3
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
..++.++.|+||+|+++|...+.++.+.|++.|||.|...... |+-.+.+...+.......+- -|+|.||+|+ +
T Consensus 52 ~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~--~ 125 (213)
T KOG0095|consen 52 NGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDL--A 125 (213)
T ss_pred CCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccch--h
Confidence 3355788999999999999999999999999999999886543 33224444444444444444 3689999998 3
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+ .+++-..+.+-+.+.. +.-++.+||+..+|++.+
T Consensus 126 d-----rrevp~qigeefs~~q-----dmyfletsakea~nve~l 160 (213)
T KOG0095|consen 126 D-----RREVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKL 160 (213)
T ss_pred h-----hhhhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHH
Confidence 2 1233344444343332 346889999999999986
No 282
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.27 E-value=1.1e-10 Score=107.89 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=73.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-----e
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 120 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-----~ 120 (476)
++|+++|..++|||||+.+++. +..... ....-|.++......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~--~~f~~~---------------------------~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK--NQVLGR---------------------------PSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCCC---------------------------CCcceeeeEEEEEEEEcCCCCCC
Confidence 4799999999999999999852 211110 00011222222222221 1
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--------------------
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------------------- 180 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-------------------- 180 (476)
....+.|+||+|+++|.......++.+|++|+|+|.++... |+ ....++..+..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~ 125 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQF 125 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhcccccccccccccccccc
Confidence 24578999999999998877778899999999999988642 22 22222222322
Q ss_pred --cCCceEEEEEeeccC
Q 011836 181 --LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 --~~ip~~ivviNK~D~ 195 (476)
.++| +|+|.||+|+
T Consensus 126 ~~~~~P-iilVGnK~Dl 141 (202)
T cd04102 126 GGNQIP-LLVIGTKLDQ 141 (202)
T ss_pred CCCCce-EEEEEECccc
Confidence 2467 9999999998
No 283
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=9.9e-12 Score=104.72 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=71.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+++|+..... . ........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--D-------------------------NSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--c-------------------------cccccccCCCcEEEEEEEecCCceEEE
Confidence 6899999999999999999643211 0 000111223344333333334445699
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeecc
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 194 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D 194 (476)
|+|++|+..+.......+..+|++|+|+|+.+... + .+..+.+..+.. ..+| +++|.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998887765555899999999999998531 1 122222222222 2477 999999998
No 284
>PLN00023 GTP-binding protein; Provisional
Probab=99.26 E-value=7.7e-11 Score=114.52 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=90.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
...+....+|+++|+.++|||||+.+++. +..... .....|.+.......+
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~--g~F~~~---------------------------~~pTIG~d~~ik~I~~ 65 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVK--GSSIAR---------------------------PPQTIGCTVGVKHITY 65 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhc--CCcccc---------------------------cCCceeeeEEEEEEEE
Confidence 45566678999999999999999999852 211100 0011222222222222
Q ss_pred Ee-------------CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----
Q 011836 119 ET-------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---- 181 (476)
Q Consensus 119 ~~-------------~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---- 181 (476)
.. ....+.|+||+|++.|...+-..++.+|++|+|+|...... |+ .....+..+...
T Consensus 66 ~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s 139 (334)
T PLN00023 66 GSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFS 139 (334)
T ss_pred CCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcccc
Confidence 11 23569999999999999888888999999999999987532 21 222333333332
Q ss_pred -----------CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCC
Q 011836 182 -----------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 182 -----------~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 222 (476)
.+| +|+|.||+|+....-.........+..+.++++.|+-
T Consensus 140 ~p~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 140 APLGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 356 8999999998321000000011345556677777653
No 285
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.8e-12 Score=111.24 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=97.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.++.|||-|+.++.. ..+. ++.. ..-|+....-...++....+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftr--nEF~------------------------~~Sk---sTIGvef~t~t~~vd~k~vk 64 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTR--NEFS------------------------LESK---STIGVEFATRTVNVDGKTVK 64 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcc--cccC------------------------cccc---cceeEEEEeeceeecCcEEE
Confidence 35699999999999999998831 1111 1100 01222222222223333456
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~ 201 (476)
..|+||+|+++|..-+-++.+.|-+|+||.|.....+ |+ ...+.+..++.. +++ +++|.||+||..
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fe---nv~rWL~ELRdhad~niv-imLvGNK~DL~~---- 133 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLNH---- 133 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHH---HH---HHHHHHHHHHhcCCCCeE-EEEeecchhhhh----
Confidence 7999999999999888888899999999999987542 22 334445555553 576 788999999821
Q ss_pred HHHHHHHH-HHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 202 KERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~-~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.+.+- ++-+.+...- ...|+.+||+.+.|+...+
T Consensus 134 ---lraV~te~~k~~Ae~~------~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 134 ---LRAVPTEDGKAFAEKE------GLFFLETSALDATNVEKAF 168 (222)
T ss_pred ---ccccchhhhHhHHHhc------CceEEEecccccccHHHHH
Confidence 11111 2222233332 4589999999999998854
No 286
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.26 E-value=1.2e-10 Score=112.92 Aligned_cols=143 Identities=18% Similarity=0.247 Sum_probs=86.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|+.|+|||||+++|+... ...... -.+.......+.+++......++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~--------------------~~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDY--------------------PPDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccC--------------------CCCccccccCCceEEEEEEEEEEECCEE
Confidence 4799999999999999999995321 110000 00000011122233444344455454
Q ss_pred eEEEEEeCCCCcChHHH---------------------HHH-----hh--hhcCEEEEEEECCC-CccccccCCCCchHH
Q 011836 123 TRFTILDAPGHKSYVPN---------------------MIS-----GA--SQADIGVLVISARK-GEFETGFEKGGQTRE 173 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~---------------------~~~-----~~--~~~D~~ilVvda~~-g~~e~~~~~~~qt~e 173 (476)
.+++++||||..++..+ ... .+ ..+|++++++++.. +.. ....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~-------~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLK-------PLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCC-------HHHHH
Confidence 57999999996654321 111 11 14789999999875 321 23455
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 174 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
.++.+.. ++| +|+|+||+|+. .++.....++.+.+.+...++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l----~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL----TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC----CHHHHHHHHHHHHHHHHHcCC
Confidence 6666654 677 89999999983 244556677788888887654
No 287
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.1e-11 Score=105.30 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=87.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
...|.++|..|||||+|+-+|.+.+ -+..-..+......+..++..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs----------------------------------~~~TvtSiepn~a~~r~gs~~ 83 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS----------------------------------HRGTVTSIEPNEATYRLGSEN 83 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC----------------------------------ccCeeeeeccceeeEeecCcc
Confidence 3689999999999999998885321 011223344445556667777
Q ss_pred EEEEeCCCCcChHHHHHHhhh---hcCEEEEEEECCCCccccccCCCCchHHHHHHHH-----H---cCCceEEEEEeec
Q 011836 125 FTILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----T---LGVTKLLLVVNKM 193 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~---~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-----~---~~ip~~ivviNK~ 193 (476)
.+++|.|||.+........+. .+-++|+|||+..-. +..+....++. . .+.|++++++||.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKq 155 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQ 155 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecch
Confidence 999999999999888877776 799999999987642 23333332222 1 2345599999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHH
Q 011836 194 DDHTVNWSKERYDEIESKMTPFL 216 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l 216 (476)
|+..+...+...+....++..+.
T Consensus 156 Dl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 156 DLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHH
Confidence 99777543333344444444443
No 288
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=115.24 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=91.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|-.-.|+++|.||+|||||++++......|.+-. + +-..-+++.... ...
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadYp-------------------F----------TTL~PnLGvV~~-~~~ 206 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYP-------------------F----------TTLVPNLGVVRV-DGG 206 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCCc-------------------c----------ccccCcccEEEe-cCC
Confidence 3456799999999999999999965444332210 0 001112222223 356
Q ss_pred eEEEEEeCCCC-----------cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceE
Q 011836 123 TRFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKL 186 (476)
Q Consensus 123 ~~~~liDtPGh-----------~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ 186 (476)
..|++.|.||. .+|+++.. .+.+.+.|||.....-. +...........+.. .+.| .
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE----Rt~vL~hviD~s~~~~~---dp~~~~~~i~~EL~~Y~~~L~~K~-~ 278 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIE----RTRVLLHVIDLSPIDGR---DPIEDYQTIRNELEKYSPKLAEKP-R 278 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHH----hhheeEEEEecCcccCC---CHHHHHHHHHHHHHHhhHHhccCc-e
Confidence 77999999993 35776654 45899999998854200 000111112222222 2455 7
Q ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+||+||||++. +++.+++..+.+.+. .++ ..+++|||.+++|+..+..
T Consensus 279 ivv~NKiD~~~---~~e~~~~~~~~l~~~---~~~-----~~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 279 IVVLNKIDLPL---DEEELEELKKALAEA---LGW-----EVFYLISALTREGLDELLR 326 (369)
T ss_pred EEEEeccCCCc---CHHHHHHHHHHHHHh---cCC-----CcceeeehhcccCHHHHHH
Confidence 89999999632 355555555544332 222 2344499999999998654
No 289
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.7e-11 Score=101.98 Aligned_cols=149 Identities=22% Similarity=0.264 Sum_probs=96.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CCe
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
.++.++|+.|+|||-|+.+++.. .++ | ...+-+-++.+..-+.. ...
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~--kfk-------------------------D----dssHTiGveFgSrIinVGgK~v 58 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIEN--KFK-------------------------D----DSSHTIGVEFGSRIVNVGGKTV 58 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHh--hhc-------------------------c----cccceeeeeecceeeeecCcEE
Confidence 58899999999999999988521 111 1 11122333333333333 345
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCce--EEEEEeeccCCCCCch
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~--~ivviNK~D~~~~~~~ 201 (476)
++.|+||+|+++|..-+-++.+.|-+++||.|+..... |+ .....+.-++.+.-|. +|++.||-|+ .+..
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIvviL~GnKkDL--~~~R 130 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIVVILCGNKKDL--DPER 130 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEEEEEeCChhhc--Chhh
Confidence 78999999999999999999999999999999987532 22 2223344445444333 5566799998 2212
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+-.+. +-..+..+ ..+-+..+|+++|+|+++-
T Consensus 131 ~Vtfl----EAs~FaqE------nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 131 EVTFL----EASRFAQE------NELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhHH----HHHhhhcc------cceeeeeecccccccHHHH
Confidence 22222 22223322 3567899999999999884
No 290
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=2e-11 Score=103.78 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=99.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|.++|..|+|||+|+-++ ....+++.. ...-|+...+..........+
T Consensus 11 t~KiLlIGeSGVGKSSLllrF--v~~~fd~~~---------------------------~~tIGvDFkvk~m~vdg~~~K 61 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRF--VSNTFDDLH---------------------------PTTIGVDFKVKVMQVDGKRLK 61 (209)
T ss_pred eEEEEEEccCCccHHHHHHHH--HhcccCccC---------------------------CceeeeeEEEEEEEEcCceEE
Confidence 589999999999999999666 333332211 001233333333344556678
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCCCCc
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~~~~ 200 (476)
+.|+||+|+++|...+-++.+.|.++|+|.|...... |. .....++.+..+ .+- .++|.||+|. .+
T Consensus 62 laiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---kLd~W~~Eld~Ystn~dii-kmlVgNKiDk--es- 131 (209)
T KOG0080|consen 62 LAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---KLDIWLKELDLYSTNPDII-KMLVGNKIDK--ES- 131 (209)
T ss_pred EEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---hHHHHHHHHHhhcCCccHh-Hhhhcccccc--hh-
Confidence 9999999999999999999999999999999887532 21 122222333333 333 3579999997 21
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+| .-.+++=.++.++++ +-|+.+||++.+|+..-
T Consensus 132 --~R-~V~reEG~kfAr~h~------~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 132 --ER-VVDREEGLKFARKHR------CLFIECSAKTRENVQCC 165 (209)
T ss_pred --cc-cccHHHHHHHHHhhC------cEEEEcchhhhccHHHH
Confidence 11 122344445666664 47999999999999874
No 291
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.22 E-value=1.5e-10 Score=93.31 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=76.0
Q ss_pred CCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecC-------C-----ceEEEEEEEECCeeeee
Q 011836 271 PNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 328 (476)
Q Consensus 271 ~~~~~~~~i~~~~~----------~~G~v~~G~v~sG~l~~g~~v~~~p~-------~-----~~~~V~si~~~~~~v~~ 328 (476)
.++|++|+|.++|. .+|.|+.|++.+|.|++||+|.+.|+ + ...+|.||+++++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 46899999999992 57999999999999999999999986 2 34689999999999999
Q ss_pred eCCCCeEEE---EeccCCccccceeeEEecC
Q 011836 329 AGPGENLRI---RLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 329 a~aG~~v~i---~l~~~~~~~i~~G~vl~~~ 356 (476)
|.||+.+++ -..++...|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 4557888899999999875
No 292
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=2.2e-10 Score=107.39 Aligned_cols=160 Identities=19% Similarity=0.131 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|..|+|||||+++|.. +.. .++....+............ .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVG--DEF-----------------------------PEGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhc--CcC-----------------------------cccCCCceeeeeEEEEEEeCCCE
Confidence 38999999999999999999952 111 11111222222222222222 4
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~---ip~~ivviNK~D~~~~~ 199 (476)
..+.++||+|+.+|...+..+...++++++++|...... +. .-+.+....+.... .| ++++.||+|+....
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~---~~--~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES---SD--ELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh---hh--HHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 668999999999999999899999999999999886221 10 23333444555543 66 99999999995432
Q ss_pred chHHHHHHH------HHHHHHHHHhcCCCccCCeeEEEeecc--cCccccccc
Q 011836 200 WSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~------~~~l~~~l~~~g~~~~~~~~iipiSa~--~g~~i~~~~ 244 (476)
.....+.+. ............ .....++.+|++ .+.++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~v~~~~ 177 (219)
T COG1100 128 SSSEEILNQLNREVVLLVLAPKAVLPE---VANPALLETSAKSLTGPNVNELF 177 (219)
T ss_pred hHHHHHHhhhhcCcchhhhHhHHhhhh---hcccceeEeecccCCCcCHHHHH
Confidence 111111100 000011111110 012348899999 888888753
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.20 E-value=2.8e-10 Score=106.53 Aligned_cols=153 Identities=16% Similarity=0.311 Sum_probs=97.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-eCCeEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTRF 125 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~~ 125 (476)
+|.++|..+|||||....+..... . .+-+.-|.|++.....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~--p----------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS--P----------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-----G----------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC--c----------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 589999999999999988743211 0 111234567776666665 345699
Q ss_pred EEEeCCCCcChHHHH-----HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCC
Q 011836 126 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 126 ~liDtPGh~~~~~~~-----~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 198 (476)
++||+||+..|.... ..-.+.+++.|+|+|+.....+..+ ......+..+... +++ +.|++.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l---~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL---AYLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH---HHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH---HHHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999998886652 3446899999999999954332111 1223333334433 455 8899999999766
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
+..++.++...+.+...+...++. .+.++.+|-+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 667777888888888888877654 57888888654
No 294
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.18 E-value=3.1e-10 Score=92.06 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=79.0
Q ss_pred eeEEecCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEE
Q 011836 350 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 350 G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
|++++.++.-. +++.|.+++.++... ..+++.++.+.+|+++..+.|+|.-+ + .+.+.+|+.+.
T Consensus 1 G~vl~~~~~~~-~~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~ll----~----------~~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLL-PTRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVLL----D----------RDELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcC-CceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEeC----C----------ccccCCCCEEE
Confidence 78999887443 369999999985421 25799999999999999999998832 2 12388999999
Q ss_pred EEEEEcceEEeeeccCccccceEEEEeCC--cEEEEEEE
Q 011836 430 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 466 (476)
Q Consensus 430 v~~~~~~pi~~~~~~~~~~lgrfilr~~~--~tvg~G~V 466 (476)
++++|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999998886 599999998 99999986
No 295
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.17 E-value=3.9e-10 Score=88.72 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=69.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
..|.++| ++.|.++.|+|.+|.|++|+.+.+.|++ ...+|+||+.+++++++|.+|+.|+|.|.+++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4577777 5668999999999999999999999999 67899999999999999999999999999886 899999
Q ss_pred EEe
Q 011836 352 VLS 354 (476)
Q Consensus 352 vl~ 354 (476)
+|-
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 973
No 296
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.16 E-value=9.3e-10 Score=104.78 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=83.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
+.....++|+++|.+|+|||||+|+|+...... ..+ ..+.|.........
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~------------------------v~~------~~~~T~~~~~~~~~ 75 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAA------------------------TSA------FQSETLRVREVSGT 75 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcc------------------------cCC------CCCceEEEEEEEEE
Confidence 344557999999999999999999996432110 000 12345555555566
Q ss_pred eCCeEEEEEeCCCCcChH------HH----HHHhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCC---
Q 011836 120 TETTRFTILDAPGHKSYV------PN----MISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV--- 183 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~------~~----~~~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~i--- 183 (476)
+++..++||||||..+.. .. +.+.+. ..|++++|...+..-+. ......++.+.. +|.
T Consensus 76 ~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~------~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD------YLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhChhhH
Confidence 778999999999976652 11 111222 57888888655543210 223344444433 442
Q ss_pred ceEEEEEeeccCCCCC------chHHHHHHHHHHHHHH
Q 011836 184 TKLLLVVNKMDDHTVN------WSKERYDEIESKMTPF 215 (476)
Q Consensus 184 p~~ivviNK~D~~~~~------~~~~~~~~~~~~l~~~ 215 (476)
.++++|+||+|....+ +..+++...+..+...
T Consensus 150 ~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~~~ 187 (249)
T cd01853 150 RNAIVVLTHAASSPPDGLNGTPFSYDRFVAQRSHIVQQ 187 (249)
T ss_pred hCEEEEEeCCccCCCCCCCCCcchHHHHHHHHHHHHHH
Confidence 3699999999985333 2334554444444444
No 297
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.1e-11 Score=99.37 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=100.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.++.++|...+|||+++-+-+.. ||-.+++ +.-|+.......+-......+
T Consensus 22 fKlliiGnssvGKTSfl~ry~dd----------------------SFt~afv-------sTvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADD----------------------SFTSAFV-------STVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcc----------------------cccccee-------eeeeeeEEEeEeeecccEEEE
Confidence 48999999999999998665321 1111221 122343333322222233579
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
.++||.|++.|...+-...+++++.||+.|...... |+....+...++.....+.+ +|+|.||+|+ .+ +|.
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeS---f~svqdw~tqIktysw~naq-vilvgnKCDm--d~---eRv 143 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FNSVQDWITQIKTYSWDNAQ-VILVGNKCDM--DS---ERV 143 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHH---HHHHHHHHHHheeeeccCce-EEEEecccCC--cc---cee
Confidence 999999999999888888999999999999887542 22111122222223345677 9999999998 22 121
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
-..+..+.+...+|| .++..||+.+.|+..+.+
T Consensus 144 -is~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 144 -ISHERGRQLADQLGF------EFFETSAKENINVKQVFE 176 (193)
T ss_pred -eeHHHHHHHHHHhCh------HHhhhcccccccHHHHHH
Confidence 122445556777877 589999999999988643
No 298
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=96.70 Aligned_cols=153 Identities=17% Similarity=0.285 Sum_probs=98.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+++++|.-=+|||+|+-+. -...+....+..++. ++.. .++ .++.....
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy--~EnkFn~kHlsTlQA------------SF~~----------kk~-----n~ed~ra~ 63 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRY--VENKFNCKHLSTLQA------------SFQN----------KKV-----NVEDCRAD 63 (218)
T ss_pred eeEEEEEcCCccchhHHHHHH--HHhhcchhhHHHHHH------------HHhh----------ccc-----ccccceee
Confidence 578999999999999999544 344444333222111 1111 011 12234467
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC--CceEEEEEeeccCCCCCch
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG--VTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~--ip~~ivviNK~D~~~~~~~ 201 (476)
+.||||+|+++|-..---+.+.+|+++||.|..+... |+ ..+.+...++. +| +. +++|.||+|+
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---Fq---KVKnWV~Elr~mlGnei~-l~IVGNKiDL------ 130 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQ---KVKNWVLELRTMLGNEIE-LLIVGNKIDL------ 130 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HH---HHHHHHHHHHHHhCCeeE-EEEecCcccH------
Confidence 8999999999997665556789999999999987642 32 22223333333 33 55 7889999998
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
++...-..++-..+....| ..++.+||+.+.|+.++++
T Consensus 131 EeeR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 131 EEERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred HHhhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 2233334455555666655 3689999999999999644
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.09 E-value=1.6e-09 Score=106.91 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=64.5
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
..++.+.||||+|...-. ...+..+|.+++|++...|.- -|.. . ...+.+. -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~-------iq~~---k-~gi~E~a-DIiVVNKaDl~~~- 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDE-------LQGI---K-KGIMELA-DLIVINKADGDNK- 209 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHH-------HHHH---H-hhhhhhh-heEEeehhcccch-
Confidence 346889999999976222 224668999999987444420 1111 1 1122333 2689999998432
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~ 245 (476)
...+....++...+....-.. .-..+++++||++|.|++++.+
T Consensus 210 ---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 ---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 233445555655554321000 0125899999999999999754
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.09 E-value=3.3e-10 Score=92.63 Aligned_cols=132 Identities=22% Similarity=0.240 Sum_probs=86.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+++++|.+++|||||++.|.... .+ .-.|..+ +++++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------------------------~l--------ykKTQAv-----e~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------------------------TL--------YKKTQAV-----EFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------------------------hh--------hccccee-----eccCc--
Confidence 479999999999999999983110 00 0011111 11111
Q ss_pred EEEeCCC----CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPG----h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
-.||||| |..+....+..+..+|++++|-+++++.. +---.++.....| .|-+|+|.|++.
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s----------~f~p~f~~~~~k~-vIgvVTK~DLae---- 104 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES----------RFPPGFLDIGVKK-VIGVVTKADLAE---- 104 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc----------cCCcccccccccc-eEEEEecccccc----
Confidence 3689999 66666667777789999999999998741 1111223333345 899999999942
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..++ +..+.+|...|-. +++.+|+....|++++
T Consensus 105 d~dI----~~~~~~L~eaGa~-----~IF~~s~~d~~gv~~l 137 (148)
T COG4917 105 DADI----SLVKRWLREAGAE-----PIFETSAVDNQGVEEL 137 (148)
T ss_pred hHhH----HHHHHHHHHcCCc-----ceEEEeccCcccHHHH
Confidence 2233 3344466666633 8999999999999884
No 301
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.09 E-value=2.4e-09 Score=105.51 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.4
Q ss_pred eEEEEEeCCCC----cCh---HHHHHHhhhhcCEEEEEEECCC
Q 011836 123 TRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ~~~~liDtPGh----~~~---~~~~~~~~~~~D~~ilVvda~~ 158 (476)
..+.|+||||. .++ ....+..++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999996 333 2355667899999999999974
No 302
>PTZ00099 rab6; Provisional
Probab=99.08 E-value=3.6e-10 Score=102.31 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-Hc--CCceEEEEEeeccCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~--~ip~~ivviNK~D~~~ 197 (476)
....+.|+||||+++|...+...++.+|++|+|+|+..... |+ ...+++..+. .. ++| +++|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 34688999999999999888888999999999999988531 21 2223333222 22 355 789999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. +... ++...+....+ ..++++||++|.|+.++++
T Consensus 100 ~~--~v~~----~e~~~~~~~~~------~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 100 LR--KVTY----EEGMQKAQEYN------TMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred cc--CCCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 11 0011 12222333332 3689999999999999643
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.06 E-value=1.2e-10 Score=110.18 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=54.8
Q ss_pred eEEEEEeCCCCcChHHHHHHh------hh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSYVPNMISG------AS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~------~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
..+.|+||||+.++....-.+ +. ..=++++++|+..-.....|- ....-.+.....++.| .|.|+||+|
T Consensus 91 ~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp -SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 378999999987775444333 32 345888999987532100000 0111122334447999 678999999
Q ss_pred CCCCCchHHH-----------------HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~-----------------~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.... .+.. +.....++..++...+. ..+++|+|+.+++++.++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHH
Confidence 95411 1111 12233333344433332 238999999999999883
No 304
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.3e-09 Score=88.37 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=98.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|.++|..+|||||++-.|. .+..+. .-.|+........+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLk--l~~~~~--------------------------------~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLK--LGQSVT--------------------------------TIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHh--cCCCcc--------------------------------cccccceeEEEEEeeee
Confidence 35789999999999999998883 222110 11233333345567789
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH---H-cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---T-LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~---~-~~ip~~ivviNK~D~~~~~ 199 (476)
.++++|..|+.+..+.+-++.....+.|+|+|+.+..- + ...+..+..+. . ...+ ++|..||-|++++-
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 99999999999999999999999999999999876521 0 12233222221 1 2455 78899999997653
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
+ .+++. .++.--... ....-+.|.++.+|+|+.+
T Consensus 135 -~---pqei~----d~leLe~~r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 -K---PQEIQ----DKLELERIR-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred -C---HHHHH----HHhcccccc-CCccEeeccccccchhHHH
Confidence 1 22333 333211111 2345788999999999876
No 305
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.05 E-value=5.6e-10 Score=93.69 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=100.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
...|+|.++.|||+|+-++ ....+. .++++ ..|+...+-...++.....+.
T Consensus 10 kllIigDsgVGKssLl~rF--~ddtFs--------------------~sYit-------TiGvDfkirTv~i~G~~VkLq 60 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRF--ADDTFS--------------------GSYIT-------TIGVDFKIRTVDINGDRVKLQ 60 (198)
T ss_pred HHHeecCCcccHHHHHHHH--hhcccc--------------------cceEE-------EeeeeEEEEEeecCCcEEEEE
Confidence 4568999999999998666 222221 12221 122222222233344456899
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCchHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
|+||+|++.|...+....+..+++++|.|...+.. | ...++.+..++.. .+| -++|.||.|.++-.
T Consensus 61 IwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~Rr----- 128 (198)
T KOG0079|consen 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPERR----- 128 (198)
T ss_pred EeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCccce-----
Confidence 99999999999888888999999999999998863 3 3566666666653 456 46899999984321
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
--..++-+.+....| +.++.+|++...|++.++
T Consensus 129 -vV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 129 -VVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred -eeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 111233344555544 579999999999998853
No 306
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.1e-09 Score=92.28 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=89.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.-++.++|--|||||||+..|- ...+. ..-.|...+...+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK--dDrl~--------------------------------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK--DDRLG--------------------------------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc--ccccc--------------------------------ccCCCcCCChHHheecC
Confidence 455789999999999999999882 11100 12345555555667788
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
-.++-+|..||..-..-+..++..+|+++++|||.+... | ...++++..+.. ..+| +++..||+|.+++
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er---~---~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER---F---AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH---h---HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 999999999999888888888999999999999987642 1 345555544433 3678 8889999999876
Q ss_pred CchHHHHHH
Q 011836 199 NWSKERYDE 207 (476)
Q Consensus 199 ~~~~~~~~~ 207 (476)
. ++++++.
T Consensus 137 ~-se~~l~~ 144 (193)
T KOG0077|consen 137 A-SEDELRF 144 (193)
T ss_pred c-cHHHHHH
Confidence 4 4444433
No 307
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.3e-09 Score=89.16 Aligned_cols=150 Identities=21% Similarity=0.282 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ET 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~ 122 (476)
+.+-.|+|..|.|||-|+.++... .++.|. .+-+.+..+..-++. .+
T Consensus 11 ifkyiiigdmgvgkscllhqftek--------------------------kfmadc-----phtigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEK--------------------------KFMADC-----PHTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHH--------------------------HHhhcC-----CcccceecceeEEEecCcE
Confidence 456789999999999999887421 122222 122333344444444 45
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCce--EEEEEeeccCCCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~--~ivviNK~D~~~~~~ 200 (476)
.++.++||.|+++|..-+.+..+.+-++++|.|...... + ......+.-++.+-.|. ++++.||.|+ .+.
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrrst---y---nhlsswl~dar~ltnpnt~i~lignkadl--e~q 131 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNTVIFLIGNKADL--ESQ 131 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhh---h---hhHHHHHhhhhccCCCceEEEEecchhhh--hhc
Confidence 678999999999999999999999999999999887532 1 12223334455554443 4566799998 322
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..-.+++. +.+...-| .-|+..||++|.|+++.
T Consensus 132 rdv~yeea----k~faeeng------l~fle~saktg~nveda 164 (215)
T KOG0097|consen 132 RDVTYEEA----KEFAEENG------LMFLEASAKTGQNVEDA 164 (215)
T ss_pred ccCcHHHH----HHHHhhcC------eEEEEecccccCcHHHH
Confidence 22224333 33555544 47999999999999874
No 308
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.5e-08 Score=102.12 Aligned_cols=145 Identities=26% Similarity=0.301 Sum_probs=101.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..++..++++|++|.|||||+..|+.... +. +-.+...-+|+ ....
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t-----------k~-----------------ti~~i~GPiTv------vsgK 111 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT-----------KQ-----------------TIDEIRGPITV------VSGK 111 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH-----------Hh-----------------hhhccCCceEE------eecc
Confidence 34567888999999999999999853210 00 00111112333 2345
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
.+.++|+.|| +-+..|+.-+..||.++|+||++-| |+ ..|.|.+.++...|.|+++-|+|..|+.. +
T Consensus 112 ~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-----fE--METmEFLnil~~HGmPrvlgV~ThlDlfk---~ 178 (1077)
T COG5192 112 TRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-----FE--METMEFLNILISHGMPRVLGVVTHLDLFK---N 178 (1077)
T ss_pred eeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-----ce--ehHHHHHHHHhhcCCCceEEEEeeccccc---C
Confidence 6899999999 4477889999999999999999988 33 68999999999999999999999999953 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
...+..++..++..+=.--| ....++..|+..
T Consensus 179 ~stLr~~KKrlkhRfWtEiy---qGaKlFylsgV~ 210 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIY---QGAKLFYLSGVE 210 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHc---CCceEEEecccc
Confidence 44555555544433211111 245788888654
No 309
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=2.1e-09 Score=102.96 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCCcChH------HHHHHhhhh--cCEEEEEEECCCCccccccCCCCchHHHHHHH-----HHcCCceEEE
Q 011836 122 TTRFTILDAPGHKSYV------PNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~------~~~~~~~~~--~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-----~~~~ip~~iv 188 (476)
+..+.++||||+.++. ....+.+.. ++++++|+|+..+.. +...+....+ ...++| +++
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3478999999976643 222333333 899999999987542 2222222222 146788 889
Q ss_pred EEeeccCCCCCchHHHHHHHHH---------------------HHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIES---------------------KMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~---------------------~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+||+|+...+.. +.+....+ ++...+.+.+. ..+++++|++++.|+.++
T Consensus 168 v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 168 VLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred EEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHH
Confidence 9999998433211 11111111 11122333332 348999999999999984
No 310
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.99 E-value=2e-09 Score=98.80 Aligned_cols=151 Identities=24% Similarity=0.256 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee---eEEEEe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG---RAHFET 120 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~---~~~~~~ 120 (476)
...+|+++|..|+|||+|+-++++ +.+... .-.|+... ...++.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~--~~f~~~-------------------------------y~ptied~y~k~~~v~~ 48 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLT--GRFVED-------------------------------YDPTIEDSYRKELTVDG 48 (196)
T ss_pred CceEEEEECCCCCCcchheeeecc--cccccc-------------------------------cCCCccccceEEEEECC
Confidence 357899999999999999988853 211110 01122111 112233
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~ 199 (476)
....+.|+||+|..+|..+....+..+|+.++|.+.++... |+...+.++.+...+. -.+| +++|.||.|+...
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~- 123 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE- 123 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc-
Confidence 44677899999999999999999999999999999987532 3322344444422222 2467 9999999999421
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+-.. ++-..+.... .++++.+||+...|++++
T Consensus 124 -R~V~~----eeg~~la~~~------~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 124 -RQVSE----EEGKALARSW------GCAFIETSAKLNYNVDEV 156 (196)
T ss_pred -cccCH----HHHHHHHHhc------CCcEEEeeccCCcCHHHH
Confidence 11111 2222233333 357999999999999986
No 311
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.95 E-value=3.3e-09 Score=88.53 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=98.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+.+.++|.++|--+|||||++.+|... +. ..++ +..|..+ ...+.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sE----D~--------------------~hlt------pT~GFn~----k~v~~ 58 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSE----DP--------------------RHLT------PTNGFNT----KKVEY 58 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccC----Ch--------------------hhcc------ccCCcce----EEEee
Confidence 3456789999999999999999998210 00 0011 1122222 23333
Q ss_pred C-CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHH---HcCCceEEEEEeeccC
Q 011836 121 E-TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAK---TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~-~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~---~~~ip~~ivviNK~D~ 195 (476)
. ..+++++|..|+......+..+....|..|+|||+++..+ |+ .+.+++ .++. ...+| +.++.||-|+
T Consensus 59 ~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~ELleeeKl~~vp-vlIfankQdl 131 (185)
T KOG0074|consen 59 DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVELLEEEKLAEVP-VLIFANKQDL 131 (185)
T ss_pred cCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHHHhhhhhhhccc-eeehhhhhHH
Confidence 3 4899999999999999999999999999999999887643 22 233333 2222 23567 7789999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+. ..+++...+.-. ++. ...+.+-.+|+++++|+...
T Consensus 132 ltaa----~~eeia~klnl~----~lr-dRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 132 LTAA----KVEEIALKLNLA----GLR-DRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred Hhhc----chHHHHHhcchh----hhh-hceEEeeeCccccccCccCc
Confidence 4432 222332222111 111 12457888999999998875
No 312
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.93 E-value=5e-09 Score=80.44 Aligned_cols=68 Identities=32% Similarity=0.470 Sum_probs=61.5
Q ss_pred CeEEEEEEEeeeecCCCEEEEec--CCce---EEEEEEEECCeeeeeeCCCCeEEEEeccCCccc-cceeeEEe
Q 011836 287 GTVVMGKVESGSVREGDSLLVMP--NKAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 354 (476)
Q Consensus 287 G~v~~G~v~sG~l~~g~~v~~~p--~~~~---~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~-i~~G~vl~ 354 (476)
|++++|||++|+|++||+|++.| .... .+|++|+.++....++.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999977 3344 999999999999999999999999998888888 89999986
No 313
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.92 E-value=1.5e-08 Score=94.56 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=84.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|..|+||||++|.|+.... .. ........|...........++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~-f~----------------------------~~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV-FK----------------------------SGSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS--SS------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc-ee----------------------------eccccCCcccccceeeeeecceEE
Confidence 6899999999999999999963221 00 000112344444444557889999
Q ss_pred EEEeCCCCcC-------hHHHHHHh----hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcC---CceEEEEE
Q 011836 126 TILDAPGHKS-------YVPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLLLVV 190 (476)
Q Consensus 126 ~liDtPGh~~-------~~~~~~~~----~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~---ip~~ivvi 190 (476)
++|||||..+ ....+..+ ...+|++|||++.. ... ...+..+..+. .+| .+++||++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t-------~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFT-------EEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-S-------HHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cch-------HHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 9999999433 23333332 34689999999988 321 33444444443 344 35789999
Q ss_pred eeccCCCCCchHHHHHHHH-HHHHHHHHhcCCCccCCeeEEEeecc
Q 011836 191 NKMDDHTVNWSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~-~~l~~~l~~~g~~~~~~~~iipiSa~ 235 (476)
|..|....+.-++.++... ..+..++++++- .++-++..
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~------R~~~f~n~ 163 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGG------RYHVFNNK 163 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT------CEEECCTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCC------EEEEEecc
Confidence 9999754432222233222 347777777752 45555444
No 314
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.92 E-value=4.5e-09 Score=104.36 Aligned_cols=151 Identities=19% Similarity=0.289 Sum_probs=81.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEE-EeeeEEEEe
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFET 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~ 120 (476)
....++|+|+|.+|+|||||+|+|... |.-+. ..-..|++- ......+..
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl-~~~d~----------------------------~aA~tGv~etT~~~~~Y~~ 82 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGL-GHEDE----------------------------GAAPTGVVETTMEPTPYPH 82 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT---TTST----------------------------TS--SSSHSCCTS-EEEE-
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCC-CCCCc----------------------------CcCCCCCCcCCCCCeeCCC
Confidence 345689999999999999999999421 11110 001122210 011122333
Q ss_pred CC-eEEEEEeCCCCc-------ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 121 ET-TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~-~~~~liDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
.+ -++++||.||.. +|+..+ .+...|..|++.+..-. ......+..+..+|.| +.+|-||
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEec
Confidence 33 469999999942 334332 36788987665543322 2345556777788988 9999999
Q ss_pred ccCC--------CCCchHHH-HHHHHHHHHHHHHhcCCCccCCeeEEEeeccc
Q 011836 193 MDDH--------TVNWSKER-YDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 193 ~D~~--------~~~~~~~~-~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
+|.- +..+++++ ++++++.....|++.|.. ..+++-+|...
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 9950 11234333 567777777778777765 56899999865
No 315
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.91 E-value=2.6e-08 Score=101.08 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCc----C---hHHHHHHhhhhcCEEEEEEECC
Q 011836 123 TRFTILDAPGHK----S---YVPNMISGASQADIGVLVISAR 157 (476)
Q Consensus 123 ~~~~liDtPGh~----~---~~~~~~~~~~~~D~~ilVvda~ 157 (476)
..+.|+|+||.. + .....++.++.+|++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 568999999942 2 3446667789999999999997
No 316
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.91 E-value=5.4e-09 Score=89.39 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=97.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE--EEEe--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA--HFET-- 120 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~--~~~~-- 120 (476)
..++.++|..-.|||+|+..+ ..|.+.. +.| .|+.+.+. .++.
T Consensus 8 qfrlivigdstvgkssll~~f--t~gkfae----------------------lsd---------ptvgvdffarlie~~p 54 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYF--TEGKFAE----------------------LSD---------PTVGVDFFARLIELRP 54 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHH--hcCcccc----------------------cCC---------CccchHHHHHHHhcCC
Confidence 357889999999999999877 4443321 111 11111111 0111
Q ss_pred -CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCc---eEEEEEeeccC
Q 011836 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVT---KLLLVVNKMDD 195 (476)
Q Consensus 121 -~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip---~~ivviNK~D~ 195 (476)
...++.++||+|+++|...+.++.+.+=++++|.|...... |+ .....+..+. ..+-| -+.+|..|.|+
T Consensus 55 g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~s---fe---hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL 128 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRES---FE---HVENWVKEAAMATQGPDKVVFLLVGHKSDL 128 (213)
T ss_pred CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhh---HH---HHHHHHHHHHHhcCCCCeeEEEEeccccch
Confidence 12468999999999999999999999999999999887531 22 1222222222 22322 25667899999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.+ ..+-..++-.++.+.+|+ .||.+|+++|.|+++.+.
T Consensus 129 --~S----qRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 129 --QS----QRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred --hh----hccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 32 222334455557777765 699999999999998543
No 317
>PTZ00258 GTP-binding protein; Provisional
Probab=98.90 E-value=3e-08 Score=99.69 Aligned_cols=84 Identities=20% Similarity=0.147 Sum_probs=56.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+|+|.||+|||||+++|......+ ....+.|++.....+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~n~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPA-------------------------------ENFPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccc-------------------------------cCCCCCcccceEEEEeccc
Confidence 445789999999999999999994221110 011334444333333322
Q ss_pred ----------------CeEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECC
Q 011836 122 ----------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 157 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~ 157 (476)
..++.|+||||..+ .....+..++.+|++++|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 4445667789999999999984
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.90 E-value=1.1e-08 Score=95.26 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=56.7
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+..+.|++|.|..... .......+..+.|+|+..+.. . ........+.+ .++++||+|+.+. .
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~---------~--~~~~~~~~~~a-~iiv~NK~Dl~~~--~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD---------K--PLKYPGMFKEA-DLIVINKADLAEA--V 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc---------h--hhhhHhHHhhC-CEEEEEHHHcccc--c
Confidence 4578999999931110 111124566778999986531 1 11222334556 6799999999432 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.....+..+. +++.+ ...+++++||++|.|+.++
T Consensus 165 ~~~~~~~~~~----l~~~~----~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 165 GFDVEKMKAD----AKKIN----PEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred hhhHHHHHHH----HHHhC----CCCCEEEEECCCCCCHHHH
Confidence 2223333333 33332 2468999999999999884
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.88 E-value=2.9e-08 Score=97.66 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=60.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
..++.+.|+||||... .....+..+|.++++.+...+ ....... -...+.| .++++||+|+.+..
T Consensus 124 ~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~----------~el~~~~-~~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG----------DDLQGIK-AGLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred hCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc----------HHHHHHH-HHHhhhc-cEEEEEcccccchh
Confidence 3578899999999642 223346778998888655433 1112111 1124677 67899999995331
Q ss_pred chHHHHHHHHHHH----HHHHHh-cCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKM----TPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l----~~~l~~-~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
........+ ..+... .++ ..+++++||++|.|+.++.+
T Consensus 189 ----~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 ----NVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred ----HHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 111111111 111111 122 24699999999999998644
No 320
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=3.9e-08 Score=95.22 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=68.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+|+|+...-... .++ .+.+...........+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~v------------------------s~f------~s~t~~~~~~~~~~~G 85 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATV------------------------SAF------QSEGLRPMMVSRTRAG 85 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccc------------------------cCC------CCcceeEEEEEEEECC
Confidence 4578999999999999999999963221110 011 0111111122234578
Q ss_pred eEEEEEeCCCCcChH--H-HHHHhhh------hcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC---CceEEEE
Q 011836 123 TRFTILDAPGHKSYV--P-NMISGAS------QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPGh~~~~--~-~~~~~~~------~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~---ip~~ivv 189 (476)
..+++|||||..+.. . .....+. .+|++|+|...+..-+. ...+..+..+.. +| -.++||+
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~------~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVD------TLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCC------HHHHHHHHHHHHHhhhhhhccEEEE
Confidence 899999999976542 1 1112222 58999999654432210 122334433332 33 2468999
Q ss_pred EeeccCC
Q 011836 190 VNKMDDH 196 (476)
Q Consensus 190 iNK~D~~ 196 (476)
+|+.|..
T Consensus 160 fTh~d~~ 166 (313)
T TIGR00991 160 LTHAQFS 166 (313)
T ss_pred EECCccC
Confidence 9999974
No 321
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.86 E-value=4.4e-08 Score=97.12 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=79.7
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHh--CCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcc---cEEEe
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLS--GQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTVEV 113 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g---~ti~~ 113 (476)
..++...+.|+++|++++|||||+++|.... ..+.+.. ...+ ..|..+. ...| .|.+.
T Consensus 11 a~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~--~k~R--------------a~DELpq-s~~GktItTTeP 73 (492)
T TIGR02836 11 AERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEY--DKER--------------AQDELPQ-SAAGKTIMTTEP 73 (492)
T ss_pred HHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchh--HHhH--------------HHhccCc-CCCCCCcccCCC
Confidence 3455667899999999999999999996441 1122111 0011 1111111 1245 33333
Q ss_pred ee---EEEE-----eCCeEEEEEeCCCCcC-------------------------hHHH----HHHhhh-hcCEEEEEE-
Q 011836 114 GR---AHFE-----TETTRFTILDAPGHKS-------------------------YVPN----MISGAS-QADIGVLVI- 154 (476)
Q Consensus 114 ~~---~~~~-----~~~~~~~liDtPGh~~-------------------------~~~~----~~~~~~-~~D~~ilVv- 154 (476)
.+ ..++ .-...+.|+||+|..+ |... +...+. .+|.+|+|.
T Consensus 74 kfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtT 153 (492)
T TIGR02836 74 KFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTT 153 (492)
T ss_pred ccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEc
Confidence 33 1111 1236899999999422 2222 233355 899999999
Q ss_pred ECCCCc-cccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 155 SARKGE-FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 155 da~~g~-~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
|+.-+. ...++ ...-.+.+..++..++| +|+++||.|-
T Consensus 154 Dgsi~dI~Re~y--~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 154 DGTITDIPREDY--VEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred CCCccccccccc--hHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 775211 10001 13456677889999999 9999999993
No 322
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.85 E-value=3.5e-10 Score=93.14 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=72.5
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
..+.++.++||.|+++|..-+.++.+.+|+.+|+.|..... +|+ ..+..+.....+ .+. +.++.||+|+.
T Consensus 44 ~~kvklqiwdtagqerfrsvt~ayyrda~allllydianka---sfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a 116 (192)
T KOG0083|consen 44 DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKA---SFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLA 116 (192)
T ss_pred CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccch---hHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccc
Confidence 34567899999999999999999999999999999977642 243 333344444433 344 67899999983
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. +. --.++=.++.+.+| +||+.+||++|.|++..
T Consensus 117 ~e-----r~-v~~ddg~kla~~y~------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 117 HE-----RA-VKRDDGEKLAEAYG------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred hh-----hc-cccchHHHHHHHHC------CCceeccccccccHhHH
Confidence 21 10 00122233444554 58999999999999864
No 323
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=1.1e-08 Score=96.40 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=48.1
Q ss_pred eEEEEEeCCCCcC--------h----H-HHHHHhhh-hcCEEEEEEECCCCccccccCCCCch-HHHHHHHHHcCCceEE
Q 011836 123 TRFTILDAPGHKS--------Y----V-PNMISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLL 187 (476)
Q Consensus 123 ~~~~liDtPGh~~--------~----~-~~~~~~~~-~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~~~ip~~i 187 (476)
..++|+||||... . + ..+..++. ..+.+++|+||..+.. .+. .+.++.+...+.+ .+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-EE
Confidence 5899999999742 1 1 22444556 4569999999998753 333 5666777778887 88
Q ss_pred EEEeeccCCC
Q 011836 188 LVVNKMDDHT 197 (476)
Q Consensus 188 vviNK~D~~~ 197 (476)
+|+||+|...
T Consensus 197 ~ViTK~D~~~ 206 (240)
T smart00053 197 GVITKLDLMD 206 (240)
T ss_pred EEEECCCCCC
Confidence 9999999843
No 324
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.83 E-value=3.9e-08 Score=76.28 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=68.1
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEec--CCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 275 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 275 ~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p--~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
+++.+.++++ ..|.+++|+|.+|+|++||.+.+.| .....+|++|+.++.+++.+.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 3567788773 5789999999999999999999999 7788999999999999999999999999886433 78999
Q ss_pred eEEe
Q 011836 351 FVLS 354 (476)
Q Consensus 351 ~vl~ 354 (476)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9985
No 325
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.8e-09 Score=86.95 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=99.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...++.++|-.|+||+|++-+| ..|.... .-.|+..+-..+++.+-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 4578999999999999998776 3333221 12344444445566888
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHH---HcCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAK---TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~---~~~ip~~ivviNK~D~~~~~ 199 (476)
++.++|..|+....+.+-.+....|.+|+|||..+-.. .+.. .+...++. ..+. .++|+.||+|..++
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr------is~a~~el~~mL~E~eLq~a-~llv~anKqD~~~~- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR------ISIAGVELYSMLQEEELQHA-KLLVFANKQDYSGA- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh------hhhhHHHHHHHhccHhhcCc-eEEEEeccccchhh-
Confidence 99999999999999999999999999999999887531 0112 22222222 2343 48899999998433
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+++...|.-..++ +..+.++..||.+|+|+++.
T Consensus 135 -------~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 135 -------LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred -------hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHH
Confidence 1222222221111111 12478999999999999985
No 326
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.5e-09 Score=92.21 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 199 (476)
.++.++||+|+++|...+-.-.+.|-+.+|+.|....- +| -.++..+.+++.. .-|.+|++.||.|+. +
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eq---SF---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL~--~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQ---SF---LNVRNWLSQLQTHAYCENPDIVLCGNKADLE--D 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchH---HH---HHHHHHHHHHHHhhccCCCCEEEEcCccchh--h
Confidence 46899999999999999888889999999999987642 12 2345555554432 457799999999992 2
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+..-..++...+..++|+ |++.+||-+|.|+.+..+
T Consensus 139 ----~R~Vs~~qa~~La~kygl------PYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ----QRVVSEDQAAALADKYGL------PYFETSACTGTNVEKAVE 174 (219)
T ss_pred ----hhhhhHHHHHHHHHHhCC------CeeeeccccCcCHHHHHH
Confidence 222223444556667764 899999999999987544
No 327
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.81 E-value=9.8e-09 Score=91.97 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCCcC----hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKS----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~----~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
....+.|+||||..+ ....+...+..+|++|+|+++..... .+..+.+........+.+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 346799999999533 22445566789999999999998753 2334444444444455589999995
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.77 E-value=1.1e-08 Score=98.33 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=25.1
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
...+....|.++|.+|||||||+++|+..
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677889999999999999999998754
No 329
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.73 E-value=2e-07 Score=71.41 Aligned_cols=76 Identities=22% Similarity=0.399 Sum_probs=59.4
Q ss_pred CCceEEEEEE--EccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 273 GPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 273 ~~~~~~i~~~--~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
.|.++.|... |...+ ++.|+|..|+|++|..| .+....+|+||+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 4566667654 46777 77779999999999999 55578899999999999999999999999999854 79999
Q ss_pred eEEe
Q 011836 351 FVLS 354 (476)
Q Consensus 351 ~vl~ 354 (476)
|+|.
T Consensus 77 DiLy 80 (81)
T PF14578_consen 77 DILY 80 (81)
T ss_dssp -EEE
T ss_pred CEEe
Confidence 9884
No 330
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=3.5e-08 Score=89.48 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=106.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-Ce
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TT 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~ 123 (476)
.++|.++|..|||||+|=+.+.....+ .+-+..|.||++...+...- +-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a------------------------------~D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA------------------------------RDTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh------------------------------hhhhccCCcceeeehhhhhhhhh
Confidence 368999999999999997765321111 11234678888876665443 46
Q ss_pred EEEEEeCCCCcChHHHHHHh-----hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccCCC
Q 011836 124 RFTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~-----~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~~~ 197 (476)
.++++|+.|++.|+.+..+. .+..++.++|.|+....+++.+. .....+..+... -.-++++.+.|||+..
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 78999999999998887774 56899999999999988776654 233333333322 2234788999999988
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
.+..+..|++-...+..+-+.+ .+..+|+|-+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~------~~~~f~TsiwD 163 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPL------ECKCFPTSIWD 163 (295)
T ss_pred cchHHHHHHHHHHHHHHhcccc------cccccccchhh
Confidence 7777777777777666554433 24678887654
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=4e-07 Score=85.31 Aligned_cols=170 Identities=19% Similarity=0.152 Sum_probs=86.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcC------ccchh-hhhhcCCch---hhhhcccEEE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS------RESWY-MAYIMDTNE---EERIKGKTVE 112 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g------~~~~~-~~~~~d~~~---~e~~~g~ti~ 112 (476)
.+...|+|.|.||+|||||+++|....- ..-..-+ .+.+. .+.+-|... .....|+-+-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~-----------~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELR-----------ERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHH-----------HTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHh-----------hcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 3467999999999999999999953210 0000000 01111 222223222 1122333332
Q ss_pred eeeEE----------------EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH
Q 011836 113 VGRAH----------------FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 113 ~~~~~----------------~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~ 176 (476)
..... ++..++.++||-|-|--.-- ..-+..+|..++|+.+..|.- -|....
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~-------iQ~~Ka-- 163 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDE-------IQAIKA-- 163 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCC-------CCTB-T--
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccH-------HHHHhh--
Confidence 21110 12246889999999943221 223578999999999887742 233221
Q ss_pred HHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCcccccccc
Q 011836 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 177 ~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~ 245 (476)
-.+.+.. |+||||.|++++ +....+++..+.-..-.. .-..|++.+||.+|.|+.++.+
T Consensus 164 --GimEiaD-i~vVNKaD~~gA-------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 164 --GIMEIAD-IFVVNKADRPGA-------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp --THHHH-S-EEEEE--SHHHH-------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred --hhhhhcc-EEEEeCCChHHH-------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 1111233 579999997443 234444554544221100 0135999999999999998643
No 332
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.66 E-value=3.2e-07 Score=88.96 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=80.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..||.++|..|.|||||++.|+.......... .+.......+...+.........++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 57999999999999999999964322111100 0000011123334443333343333
Q ss_pred eEEEEEeCCCCcChHHH-------------HHH-hh-------------hhcCEEEEEEECCCCccccccCCCCchHHHH
Q 011836 123 TRFTILDAPGHKSYVPN-------------MIS-GA-------------SQADIGVLVISARKGEFETGFEKGGQTREHV 175 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~-------------~~~-~~-------------~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l 175 (476)
.+++|+||||+.+.+.+ -.. .+ ...|++|+.|+++.. +-....+
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~---------~L~~~Di 133 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH---------GLKPLDI 133 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS---------SS-HHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc---------cchHHHH
Confidence 57899999996542111 100 01 257899999998743 1223344
Q ss_pred HHHHHcC--CceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCC
Q 011836 176 MLAKTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 176 ~~~~~~~--ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 222 (476)
..++.+. ++ +|-||.|.|.. ..+.....+..+...+...+++
T Consensus 134 ~~mk~Ls~~vN-vIPvIaKaD~l----t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 134 EFMKRLSKRVN-VIPVIAKADTL----TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHHHTTTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHhccccc-EEeEEeccccc----CHHHHHHHHHHHHHHHHHcCce
Confidence 4444442 44 89999999983 4667888889998888877653
No 333
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.66 E-value=5.7e-08 Score=92.41 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=93.7
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
......+...|+++|.+|||||||+++|. ......+..++ .|.+.....
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLF------------------------------ATLDpT~h~ 219 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLF------------------------------ATLDPTLHS 219 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhh------------------------------eeccchhhh
Confidence 33444567899999999999999999995 22222221111 122222211
Q ss_pred EE-eCCeEEEEEeCCCCcChHHH--------HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc----
Q 011836 118 FE-TETTRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---- 184 (476)
Q Consensus 118 ~~-~~~~~~~liDtPGh~~~~~~--------~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip---- 184 (476)
.. -++..+.+.||-|...-++. ++.-...+|.++.|+|.+.+..| .|-...+..+..+|+|
T Consensus 220 a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pk 293 (410)
T KOG0410|consen 220 AHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPK 293 (410)
T ss_pred ccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHH
Confidence 11 24567899999995433222 23334689999999999998653 5666778888999986
Q ss_pred --eEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 185 --KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 --~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+|=|=||+|.... +.++ +.--.+++|+++|+|+.++
T Consensus 294 l~~mieVdnkiD~e~~-~~e~---------------------E~n~~v~isaltgdgl~el 332 (410)
T KOG0410|consen 294 LQNMIEVDNKIDYEED-EVEE---------------------EKNLDVGISALTGDGLEEL 332 (410)
T ss_pred HhHHHhhccccccccc-cCcc---------------------ccCCccccccccCccHHHH
Confidence 34555688886322 1110 0112689999999999884
No 334
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.63 E-value=3.3e-07 Score=84.55 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=56.0
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+..+++|+|.|-. ...... -..+|.+|+|+|+..+.. ... ......... =++++||+|+.+. .
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~---------~~~--~~~~qi~~a-d~~~~~k~d~~~~--~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK---------IPR--KGGPGITRS-DLLVINKIDLAPM--V 153 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh---------hhh--hhHhHhhhc-cEEEEEhhhcccc--c
Confidence 4567899999931 111111 123688999999998741 111 111111222 1679999999431 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
....+.+.+.++. ++ ...+++++||++|+|+.++
T Consensus 154 ~~~~~~~~~~~~~----~~----~~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 154 GADLGVMERDAKK----MR----GEKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred cccHHHHHHHHHH----hC----CCCCEEEEECCCCCCHHHH
Confidence 1223333343333 32 2468999999999999985
No 335
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.61 E-value=3.6e-07 Score=71.74 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=60.4
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
..|.+++ +..|.++++||.+|+|++||.|++...+...+|..|... ..++++|.|||++++ .|+ .+++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence 4455555 346999999999999999999998777777788888654 578999999999995 666 448899
Q ss_pred eEEec
Q 011836 351 FVLSS 355 (476)
Q Consensus 351 ~vl~~ 355 (476)
|+|+.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99873
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.61 E-value=2.1e-07 Score=88.23 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.+.||.|-|--.-- ..-...+|..++|.-+..|.- -|... .-.+.+-. |+||||+|+.+++
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~-------~Q~iK----~GimEiaD-i~vINKaD~~~A~- 205 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDD-------LQGIK----AGIMEIAD-IIVINKADRKGAE- 205 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcH-------HHHHH----hhhhhhhh-eeeEeccChhhHH-
Confidence 36788999998843221 122457899999887766631 12221 12233332 5799999985442
Q ss_pred hHHHHHHHHHHHHHH---HHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 201 SKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~---l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..+.++...+... -...+| ..+++.+||.+|+|+.++.+
T Consensus 206 --~a~r~l~~al~~~~~~~~~~~W----~ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 206 --KAARELRSALDLLREVWRENGW----RPPVVTTSALEGEGIDELWD 247 (323)
T ss_pred --HHHHHHHHHHHhhcccccccCC----CCceeEeeeccCCCHHHHHH
Confidence 2233333333222 223344 35899999999999999754
No 337
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.60 E-value=3.1e-07 Score=72.46 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccc
Q 011836 273 GPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 346 (476)
Q Consensus 273 ~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~ 346 (476)
.||.+.|..+. +..|.++++||.+|+|+.||.|+... ....+|.+|+.. ..++++|.|||+|++ .+++ +
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl~--~ 76 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGLK--G 76 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECCC--C
Confidence 57888888876 35699999999999999999998755 555678888764 468999999999984 6663 4
Q ss_pred cceeeEEe
Q 011836 347 ILSGFVLS 354 (476)
Q Consensus 347 i~~G~vl~ 354 (476)
+..||+|+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 78999885
No 338
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.58 E-value=4.9e-07 Score=70.99 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=60.9
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
..|.+.+ +..|.++++||.+|+|++||.|++...+...+|.+|... ..+++++.|||++++ .|++ +++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~--~~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLK--DTATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCC--CCccC
Confidence 3455554 346999999999999999999998887777888888664 578999999999996 7664 48899
Q ss_pred eEEec
Q 011836 351 FVLSS 355 (476)
Q Consensus 351 ~vl~~ 355 (476)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99863
No 339
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=85.72 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=98.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...+.++++|..|.|||+|++.++..... ...+ . ...|-|...... .-+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~-------------~~t~-------------k--~K~g~Tq~in~f---~v~ 182 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI-------------ADTS-------------K--SKNGKTQAINHF---HVG 182 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh-------------hhhc-------------C--CCCccceeeeee---ecc
Confidence 44689999999999999999988642211 0000 0 034555554433 235
Q ss_pred eEEEEEeCCCC----------cChHHHHHHhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 123 TRFTILDAPGH----------KSYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPGh----------~~~~~~~~~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
.++.++|.||. .++.+.+..++ ..-=-+.+++|+.-++ ++.....+..+...++| +.+|
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP-~t~v 254 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP-MTSV 254 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC-eEEe
Confidence 78999999992 34444444443 2344567889999885 36788889999999999 8999
Q ss_pred EeeccCCCCCc--hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 190 VNKMDDHTVNW--SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 190 iNK~D~~~~~~--~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+||||....-. .+.....++..+..+.... | ....|++.+|+.++.|++.+.
T Consensus 255 fTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 255 FTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-F--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred eehhhhhhhccccccCccccceeehhhccccc-e--eccCCceeeecccccCceeee
Confidence 99999721100 0000011111111111111 1 124578889999999998863
No 340
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-08 Score=88.64 Aligned_cols=154 Identities=20% Similarity=0.163 Sum_probs=98.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++++|+|.-+.||||++.+.+ .|.+....- .+ .-.|+. | +.+ ....++
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkdyk------------kt----Igvdfl--e--rqi-------~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDYK------------KT----IGVDFL--E--RQI-------KVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--ccccccccc------------cc----cchhhh--h--HHH-------HhhHHH
Confidence 345789999999999999999874 454443210 00 001111 1 111 112345
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH--HHcCCceEEEEEeeccCCCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA--KTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~--~~~~ip~~ivviNK~D~~~~~~ 200 (476)
..+.+|||+|++.|-..+..+.+.|.+.+||++..+-.. |+ .+.+.-... ..-.|| .++|-||+|+.+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDlved-- 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDLVED-- 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchhhHh--
Confidence 567899999999999988899999999999999887531 22 233333222 234688 7789999999432
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+. --..++..+.+.+ ...++.+|++...|+.+++
T Consensus 140 s~----~~~~evE~lak~l------~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 140 SQ----MDKGEVEGLAKKL------HKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hh----cchHHHHHHHHHh------hhhhhhhhhhhhhhhHHHH
Confidence 11 1223333344443 2478999999999988753
No 341
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.55 E-value=9.1e-07 Score=69.96 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=60.9
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccC-Cccccce
Q 011836 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILS 349 (476)
Q Consensus 276 ~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~ 349 (476)
.+.|..+. +..|.++++||++|+|+.||.|++...+...+|..|..+ +.+++++.|||++++. .++ ...++..
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDARV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcccc
Confidence 45566655 356999999999999999999998776667788888754 4688999999999973 222 1245889
Q ss_pred eeEEec
Q 011836 350 GFVLSS 355 (476)
Q Consensus 350 G~vl~~ 355 (476)
||+|++
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 999873
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.55 E-value=1.5e-07 Score=90.58 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=51.5
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-----
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET----- 122 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~----- 122 (476)
|+++|.||+|||||+++|....-.+ ....+.|++.........+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-------------------------------~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-------------------------------ccccccchhceeeeEEeccchhhh
Confidence 5899999999999999995321110 0112334333322222222
Q ss_pred ------------eEEEEEeCCCCc-------ChHHHHHHhhhhcCEEEEEEECCC
Q 011836 123 ------------TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ------------~~~~liDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~~ 158 (476)
.++.|+|+||.. ......+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 359999999932 234456667889999999999854
No 343
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.53 E-value=1.4e-06 Score=91.27 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=68.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|.+|+|||||+|.|+....... . ....+.|. .........+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~v-------------------------s----s~~~~TTr-~~ei~~~idG~~ 167 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFST-------------------------D----AFGMGTTS-VQEIEGLVQGVK 167 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccc-------------------------c----CCCCCceE-EEEEEEEECCce
Confidence 47899999999999999999964321100 0 01122222 223334557889
Q ss_pred EEEEeCCCCcCh------HHHHHH----hhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcC---CceEEE
Q 011836 125 FTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLLL 188 (476)
Q Consensus 125 ~~liDtPGh~~~------~~~~~~----~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~---ip~~iv 188 (476)
+.||||||..+. ...++. .+. .+|++|+|+....... .......+..+. .+| .+++||
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 999999996642 122222 223 4788888876543211 011222333332 233 357999
Q ss_pred EEeeccCCC
Q 011836 189 VVNKMDDHT 197 (476)
Q Consensus 189 viNK~D~~~ 197 (476)
++|..|...
T Consensus 242 VFThgD~lp 250 (763)
T TIGR00993 242 TLTHAASAP 250 (763)
T ss_pred EEeCCccCC
Confidence 999999864
No 344
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.53 E-value=2.9e-07 Score=91.61 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=53.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC---
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 122 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--- 122 (476)
++|+++|.||+|||||+++|......+ ....+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-------------------------------cccccccccceEEEEEeccccc
Confidence 689999999999999999995322100 0113334333222222211
Q ss_pred --------------eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCC
Q 011836 123 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 --------------~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~ 158 (476)
.++.|+|+||..+ .....+..++.+|++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3689999999432 34456667889999999999953
No 345
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.52 E-value=1.2e-06 Score=69.20 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=59.6
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcc
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~ 345 (476)
|++.|.++. +..|.++++||++|+|++||.|++...+ ...+|.+|... ..+++++.|||+++ +.++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECC--C
Confidence 456777765 4579999999999999999999876653 24678888543 47899999999996 5666 3
Q ss_pred ccceeeEEe
Q 011836 346 DILSGFVLS 354 (476)
Q Consensus 346 ~i~~G~vl~ 354 (476)
++..||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 588999985
No 346
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.51 E-value=3.6e-07 Score=84.02 Aligned_cols=86 Identities=26% Similarity=0.268 Sum_probs=58.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..-+|+++|.|..|||||+..+...... + .-..+ .|.......+++++.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Se------------a-----------A~yeF--------TTLtcIpGvi~y~ga 109 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSE------------A-----------ASYEF--------TTLTCIPGVIHYNGA 109 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhh------------h-----------hceee--------eEEEeecceEEecCc
Confidence 4679999999999999999988421110 0 00000 122223334677889
Q ss_pred EEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 011836 124 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 124 ~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~ 160 (476)
.+.++|.||... --+.+++.++.||.+++|+||....
T Consensus 110 ~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 110 NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 999999999422 2344566678999999999999863
No 347
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.49 E-value=6.9e-07 Score=79.81 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=53.3
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcC-EEEEEEECCCCccccccCCCCchHH-HHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D-~~ilVvda~~g~~e~~~~~~~qt~e-~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
..+.||-..| ...... .-...| ..|+|||..+|.- .-+. +=.+ .. . =++||||.|+ +++
T Consensus 97 ~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~--------~P~K~gP~i---~~-a-DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGED--------IPRKGGPGI---FK-A-DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCC--------CcccCCCce---eE-e-eEEEEehHHh--HHH
Confidence 4688888888 222111 012334 8899999999851 1111 0000 01 1 1579999999 332
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
-.. -.+.+..-.++. +++.+|+.+|+++|+|+++.
T Consensus 158 v~~----dlevm~~da~~~----np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGA----DLEVMARDAKEV----NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCc----cHHHHHHHHHHh----CCCCCEEEEeCCCCcCHHHH
Confidence 221 122222233333 24779999999999999873
No 348
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.47 E-value=1.7e-06 Score=67.57 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=55.5
Q ss_pred CCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 286 MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 286 ~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
.|.++++||.+|+|++||.|++...+...+|..|... ..+++++.|||+++ +.++ . ++.||+|+
T Consensus 13 ~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gdtl~ 80 (81)
T cd04091 13 FGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGDTFT 80 (81)
T ss_pred CCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCCEec
Confidence 4999999999999999999999888888889888764 46899999999999 5665 3 88999986
No 349
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.44 E-value=1.2e-06 Score=68.98 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=56.0
Q ss_pred cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEec
Q 011836 285 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 ~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 355 (476)
..|+++++||++|+|+.||.|+....+...+|..|... +.++++|.|||++++ .++ .+++.||+|++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--ECC--CCccccCEeeC
Confidence 57999999999999999999988776666788888654 578999999999995 655 44889999974
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.4e-06 Score=87.78 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=63.9
Q ss_pred EEEEEeCCCC---cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGH---KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh---~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.+.++|.||- ..+......-.-.+|+.|||+.|.... .++..++......+.|+++|+.||+|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl--------t~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL--------TLSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh--------HHHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 5899999994 345555555566899999999998765 366777766666678999999999997321
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~ 235 (476)
.++..+.++.++.+ |+-..+. ...-.++.+|++
T Consensus 277 e~ec~e~V~~Qi~e-L~v~~~~-eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 277 EPECKEDVLKQIHE-LSVVTEK-EAADRVFFVSAK 309 (749)
T ss_pred cHHHHHHHHHHHHh-cCcccHh-hhcCeeEEEecc
Confidence 22333444444331 2211221 112257788854
No 351
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.37 E-value=1.1e-06 Score=89.81 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=92.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.+||+++|..|+|||+|+-.|+...-. +.-+ -+-.-++|- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~---------------------------~~VP-~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV---------------------------DAVP-RRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc---------------------------cccc-ccCCccccC---CccCc
Confidence 3566799999999999999999988632210 0000 011123333 12223
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviNK~D~ 195 (476)
+....+++||+-..+-.......++.||+++++.+.++..+ ++ .-+..++=+.+.+ ++| +|+|.||.|.
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T---~D--~ist~WLPlir~~~~~~~~~P-VILvGNK~d~ 127 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST---VD--RISTKWLPLIRQLFGDYHETP-VILVGNKSDN 127 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH---hh--hhhhhhhhhhhcccCCCccCC-EEEEeeccCC
Confidence 44558999999777766666777899999999998877432 11 2233333444443 477 9999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+ .. ..+....-|...++.+ -..|.+||++-.|+.++
T Consensus 128 ~~~~-~~-s~e~~~~pim~~f~Ei-------EtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 128 GDNE-NN-SDEVNTLPIMIAFAEI-------ETCIECSALTLANVSEL 166 (625)
T ss_pred cccc-cc-chhHHHHHHHHHhHHH-------HHHHhhhhhhhhhhHhh
Confidence 4322 11 1111111111112221 14677788887777665
No 352
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=72.84 Aligned_cols=157 Identities=16% Similarity=0.229 Sum_probs=105.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhh--hcccEEEeeeEEE
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER--IKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~ti~~~~~~~ 118 (476)
...-.++|+++|.+..|||||+-.-. .+.. ++|. ..|+..--...++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV--~~~~-----------------------------de~~~q~~GvN~mdkt~~i 64 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYV--QNEY-----------------------------DEEYTQTLGVNFMDKTVSI 64 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhh--cchh-----------------------------HHHHHHHhCccceeeEEEe
Confidence 33446899999999999999975432 1111 1111 2222222122223
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEeeccC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDD 195 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~---ip~~ivviNK~D~ 195 (476)
......+.++|..|+++|..+.--+...+-+++++.|.....+ + ....+..++++.++ +| |++.+|-|.
T Consensus 65 ~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T---L---nSi~~WY~QAr~~NktAiP--ilvGTKyD~ 136 (205)
T KOG1673|consen 65 RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST---L---NSIKEWYRQARGLNKTAIP--ILVGTKYDL 136 (205)
T ss_pred cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH---H---HHHHHHHHHHhccCCccce--EEeccchHh
Confidence 3334568899999999998776666677888999999887643 1 24456667777665 56 578999997
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. .+.+.+..+.+..+-+.+.+.+ +.+.+.+|+-+..|+...
T Consensus 137 f-i~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 137 F-IDLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKI 177 (205)
T ss_pred h-hcCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHH
Confidence 4 3445555666777777777765 457899999999999875
No 353
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=8.6e-06 Score=74.59 Aligned_cols=143 Identities=21% Similarity=0.283 Sum_probs=83.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhc-ccEEEeeeEEEEeCC-
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIK-GKTVEVGRAHFETET- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~-g~ti~~~~~~~~~~~- 122 (476)
..||.++|..|.|||||+|.|.. +...+. + ..| ...++.+ -+.+......++-++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~-s~v~~~-------------s--------~~~-~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFK-SHVSDS-------------S--------SSD-NSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHH-HHHhhc-------------c--------CCC-cccCcccceEEEEeeeeeeeecce
Confidence 57999999999999999999842 111000 0 001 1112211 122233333344443
Q ss_pred -eEEEEEeCCCCc---------------------ChHHHHHHhhh-------hcCEEEEEEECCCCccccccCCCCchHH
Q 011836 123 -TRFTILDAPGHK---------------------SYVPNMISGAS-------QADIGVLVISARKGEFETGFEKGGQTRE 173 (476)
Q Consensus 123 -~~~~liDtPGh~---------------------~~~~~~~~~~~-------~~D~~ilVvda~~g~~e~~~~~~~qt~e 173 (476)
-++++|||||.. .|++.-+...+ ..+++++.|.++.... .+-..+
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsL------rplDie 176 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSL------RPLDIE 176 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCcc------CcccHH
Confidence 468999999943 34444443332 4678899998875432 355666
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCC
Q 011836 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 174 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 222 (476)
.++.+.. +-.+|-||-|.|... -+...+.++.+++-|.+.|++
T Consensus 177 flkrLt~--vvNvvPVIakaDtlT----leEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 177 FLKRLTE--VVNVVPVIAKADTLT----LEERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHhh--hheeeeeEeeccccc----HHHHHHHHHHHHHHHHhcCcc
Confidence 6654443 234777899999743 234456667777778777653
No 354
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.31 E-value=1.2e-05 Score=78.52 Aligned_cols=146 Identities=17% Similarity=0.266 Sum_probs=88.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.-..+|.++|..|.||||++|.|+...- .+... .-+.......+++.+......+.-++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDETE--------------------IDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCCCC--------------------ccCcccccCCcceEEEeeeeeeecCC
Confidence 4468999999999999999999975411 11000 00001111234455555555555444
Q ss_pred --eEEEEEeCCCCcChHH-------------HHHHh-h--------------hhcCEEEEEEECCCCccccccCCCCchH
Q 011836 123 --TRFTILDAPGHKSYVP-------------NMISG-A--------------SQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~-------------~~~~~-~--------------~~~D~~ilVvda~~g~~e~~~~~~~qt~ 172 (476)
.++++|||||..+++. ..... + ...+++|+.+..+..-. .+...
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l------~~~DI 153 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL------KPLDI 153 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC------CHHHH
Confidence 4689999999665422 22111 1 14689999998664311 13444
Q ss_pred HHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 173 e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
+.++.+.. .+. +|-||-|.|. +..+.+...++.+...+...++
T Consensus 154 e~Mk~ls~-~vN-lIPVI~KaD~----lT~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 154 EAMKRLSK-RVN-LIPVIAKADT----LTDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHhc-ccC-eeeeeecccc----CCHHHHHHHHHHHHHHHHHhCC
Confidence 44333322 244 8889999998 3456778888888888887754
No 355
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.29 E-value=3.1e-06 Score=85.09 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=86.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.+++.++|.||.|||++++.+. .+..+-. .|++ .|-.+-..++...-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt--radvevq-----------------pYaF------------TTksL~vGH~dykY 214 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQ-----------------PYAF------------TTKLLLVGHLDYKY 214 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc--ccccccC-----------------Cccc------------ccchhhhhhhhhhe
Confidence 446889999999999999988773 1111100 0111 01111112344455
Q ss_pred eEEEEEeCCCCcCh------HHHH--HHhhh-hcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEE
Q 011836 123 TRFTILDAPGHKSY------VPNM--ISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 188 (476)
Q Consensus 123 ~~~~liDtPGh~~~------~~~~--~~~~~-~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~iv 188 (476)
..|.++||||.-+- +-+| +.++. .--++++++|.++.. |+ ...+.+.+... .+.| +|+
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---Gy----Sva~QvkLfhsIKpLFaNK~-~Il 286 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GY----SVAAQVKLYHSIKPLFANKV-TIL 286 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CC----CHHHHHHHHHHhHHHhcCCc-eEE
Confidence 67899999994332 2222 23333 334678888987642 11 22333333332 2455 899
Q ss_pred EEeeccCCCC-CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~-~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+||+|.... +.++ -.+++...+..- .+++++..|..+.+|+-.+
T Consensus 287 vlNK~D~m~~edL~~-----~~~~ll~~~~~~-----~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 287 VLNKIDAMRPEDLDQ-----KNQELLQTIIDD-----GNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred EeecccccCccccCH-----HHHHHHHHHHhc-----cCceEEEecccchhceeeH
Confidence 9999998543 2222 222333333332 2578999999999998764
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.28 E-value=1.4e-05 Score=75.20 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=57.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+...|+|+|.+++|||||+|+|+.....+.- .+ ......+|+-+....... .
T Consensus 3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~-----------------------~~-~~~~~T~gi~~~~~~~~~-~ 57 (224)
T cd01851 3 AGFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV-----------------------MD-TSQQTTKGIWMWSVPFKL-G 57 (224)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEe-----------------------cC-CCCCCccceEEEeccccC-C
Confidence 3456788999999999999999999643211110 00 011112344332211111 2
Q ss_pred CCeEEEEEeCCCCcC------hHHHHHHhhhh--cCEEEEEEECCCC
Q 011836 121 ETTRFTILDAPGHKS------YVPNMISGASQ--ADIGVLVISARKG 159 (476)
Q Consensus 121 ~~~~~~liDtPGh~~------~~~~~~~~~~~--~D~~ilVvda~~g 159 (476)
.+..+.++||||..+ -....+.++.. +|+.|+.++....
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence 457899999999543 23344555555 9999999887643
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=1.5e-05 Score=78.83 Aligned_cols=94 Identities=14% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCeEEEEEeCCCCcChHH-------HHHHhh-----hhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEE
Q 011836 121 ETTRFTILDAPGHKSYVP-------NMISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~-------~~~~~~-----~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~i 187 (476)
.++.+.||||||...+-. .+.+.+ ..++..+||+||..|- ...... ......++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 567899999999654322 222222 2478899999999762 222222 222334554 4
Q ss_pred EEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+++||+|.. .. .-.+.+ .+... ..|+..++ +|++++++
T Consensus 264 iIlTKlD~t-~~-----~G~~l~----~~~~~------~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGT-AK-----GGVVFA----IADEL------GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCC-CC-----ccHHHH----HHHHH------CCCEEEEe--CCCChhhC
Confidence 689999962 11 112222 22333 34788887 68888664
No 358
>PRK14974 cell division protein FtsY; Provisional
Probab=98.27 E-value=3.8e-05 Score=76.23 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~ivviNK~ 193 (476)
.++.+.||||||....-...+.. ...+|..+||+||..| ....+.+... ...++. - +++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~-g-iIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID-G-VILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC-E-EEEeee
Confidence 34679999999976433333222 2368999999999876 2334433333 346776 3 689999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|... . .-.+.+ ..... ..|+.+++ +|++++++
T Consensus 290 D~~~-~-----~G~~ls----~~~~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADA-K-----GGAALS----IAYVI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCC-C-----ccHHHH----HHHHH------CcCEEEEe--CCCChhhc
Confidence 9731 1 112222 12222 34777777 68998664
No 359
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.27 E-value=3e-05 Score=66.05 Aligned_cols=148 Identities=21% Similarity=0.185 Sum_probs=88.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee-EEEEeC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETE- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~~- 121 (476)
+..+|+++|.-+.|||.++.+|++........ --.|+.-.+ ...+++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecCC
Confidence 45689999999999999999998643322110 111222111 123332
Q ss_pred --CeEEEEEeCCCCcChHHHH-HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeec
Q 011836 122 --TTRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKM 193 (476)
Q Consensus 122 --~~~~~liDtPGh~~~~~~~-~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~ 193 (476)
...+.|.||.|...+-.+. ..+++.+|+.+||.|..+... | |-.+.++.-.. -.+| ++|+.||.
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f----~rv~llKk~Idk~KdKKEvp-iVVLaN~r 128 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---F----QRVELLKKEIDKHKDKKEVP-IVVLANKR 128 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---H----HHHHHHHHHHhhcccccccc-EEEEechh
Confidence 3578999999998884343 445789999999999887642 1 33333322111 2467 88999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
|+.+. .+ .. .+--....++ +.+..+.+++.....+.+
T Consensus 129 dr~~p--~~--vd--~d~A~~Wa~r------Ekvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 129 DRAEP--RE--VD--MDVAQIWAKR------EKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hcccc--hh--cC--HHHHHHHHhh------hheeEEEEEeccchhhhh
Confidence 99321 11 11 1111112222 356788999877666555
No 360
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=9.6e-07 Score=78.29 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+..+|+++|.+|+|||||+|+|+.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 457899999999999999999963
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-05 Score=79.33 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=52.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE------E
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH------F 118 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~------~ 118 (476)
.++++|+|.||+|||||+++|......+. +|.+ ..-|...|++.-..... +
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~a-------------------NYPF----~TIePN~Giv~v~d~rl~~L~~~~ 58 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIA-------------------NYPF----CTIEPNVGVVYVPDCRLDELAEIV 58 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcccc-------------------CCCc----ccccCCeeEEecCchHHHHHHHhc
Confidence 47899999999999999999953221111 1111 11111222211111000 0
Q ss_pred E----eCCeEEEEEeCCCC-------cChHHHHHHhhhhcCEEEEEEECCC
Q 011836 119 E----TETTRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 119 ~----~~~~~~~liDtPGh-------~~~~~~~~~~~~~~D~~ilVvda~~ 158 (476)
. +-...+.|+|.+|. +-.-...+.-++.+|+++.|||+..
T Consensus 59 ~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 59 KCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0 11235789999993 2345555666899999999999973
No 362
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=3.9e-06 Score=74.05 Aligned_cols=148 Identities=21% Similarity=0.299 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE--EEe
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FET 120 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~--~~~ 120 (476)
.....++++|..+.||||++.+.+ +|.+.. ....|+.+.... |.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeFe~-------------------------------~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEFEK-------------------------------TYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--ccccee-------------------------------cccCcceeEEeeeeeec
Confidence 567899999999999999998874 443221 112233332222 222
Q ss_pred --CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCC
Q 011836 121 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 --~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~ 197 (476)
+..++..+||.|+++|......+.-+..+|++++|...-.+ ++ .-.+.|-.+++. .++| ++++.||.|..
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t---~~--n~~rwhrd~~rv~~NiP-iv~cGNKvDi~- 127 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT---YK--NVPRWHRDLVRVRENIP-IVLCGNKVDIK- 127 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhh---hh--cchHHHHHHHHHhcCCC-eeeeccceecc-
Confidence 23789999999999998777666667889999999887654 11 233444444444 3578 99999999972
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+ + +++.+ .+.+....++..+.+||++..|...+
T Consensus 128 -~----r--~~k~k------~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 128 -A----R--KVKAK------PVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred -c----c--ccccc------cceeeecccceeEEeecccccccccc
Confidence 1 1 11111 11222234678999999999998875
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.21 E-value=1.1e-05 Score=82.23 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.||||||....-..++.. ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 36789999999966543333332 23588999999998762 2233333332 34454 4689999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 364
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.20 E-value=1.7e-06 Score=77.89 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=40.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|.+|+|||||+|+|+..... ......|+|.......+ +
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~---~ 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL---D 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---C
Confidence 44579999999999999999999632110 11224677776655443 2
Q ss_pred eEEEEEeCCCC
Q 011836 123 TRFTILDAPGH 133 (476)
Q Consensus 123 ~~~~liDtPGh 133 (476)
..+.++||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 46899999993
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.19 E-value=5.6e-05 Score=73.16 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHH-------hhh-----hcCEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEE
Q 011836 121 ETTRFTILDAPGHKSYVPNMIS-------GAS-----QADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~-------~~~-----~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~i 187 (476)
.++.+.||||||....-...+. ... .+|..+||+|+..+- ...... .+....++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 4678999999997654333322 111 389999999998652 233333 333345655 3
Q ss_pred EEEeeccC
Q 011836 188 LVVNKMDD 195 (476)
Q Consensus 188 vviNK~D~ 195 (476)
+++||+|.
T Consensus 222 ~IlTKlDe 229 (272)
T TIGR00064 222 IILTKLDG 229 (272)
T ss_pred EEEEccCC
Confidence 68999997
No 366
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.18 E-value=5.8e-06 Score=74.80 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=92.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-eCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TET 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~ 122 (476)
..++++++|...+|||.|+-.. .++.+....+ ..+.|.. ... .... ...
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~--t~~~fp~~yv-----------------PTVFdny------s~~-----v~V~dg~~ 52 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY--TTNAFPEEYV-----------------PTVFDNY------SAN-----VTVDDGKP 52 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe--ccCcCccccc-----------------CeEEccc------eEE-----EEecCCCE
Confidence 3578999999999999998533 5554432210 0111110 011 1121 233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~ 200 (476)
..+.++||.|+++|-+-..-....+|+.|++.+...... |+ .-....+-.... -++| +|+|.+|.|+.. +
T Consensus 53 v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~-d- 124 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVKSKWIPEIKHHCPNVP-IILVGTKADLRD-D- 124 (198)
T ss_pred EEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHHhhhhHHHHhhCCCCC-EEEEeehHHhhh-C-
Confidence 568999999999997644445679999999888776532 22 111222222222 2578 999999999941 1
Q ss_pred hHHHHHHHH---------HHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~---------~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
....+++. .+-..+.+++|. ..++.+||++..|+.+.
T Consensus 125 -~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~v 170 (198)
T KOG0393|consen 125 -PSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEV 170 (198)
T ss_pred -HHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHH
Confidence 11111111 222334445542 47999999999998875
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.17 E-value=1.6e-05 Score=69.16 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=55.2
Q ss_pred HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHH
Q 011836 138 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 215 (476)
Q Consensus 138 ~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~ 215 (476)
+.....+..+|++++|+|+..+.. .+..+....+... +.| +++++||+|+. + ++... .....
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~--~--~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADLL--T--EEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhcC--C--HHHHH----HHHHH
Confidence 456778899999999999988753 3444555566555 777 88999999983 2 22222 23334
Q ss_pred HHhcCCCccCCeeEEEeecccCcc
Q 011836 216 LKASGYNVKKDVQFLPISGLMGLN 239 (476)
Q Consensus 216 l~~~g~~~~~~~~iipiSa~~g~~ 239 (476)
++..+ .+++++||+++.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44443 3689999999886
No 368
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.16 E-value=1.5e-05 Score=70.41 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=52.7
Q ss_pred HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 142 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 142 ~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
..+..+|++++|+|+.++.. .+..+....+...+.| +++++||+|+.. ++..+. ...+....
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~----~~~~~~~~-- 69 (156)
T cd01859 8 RIIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEK----WKSIKESE-- 69 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHH----HHHHHHhC--
Confidence 34456999999999987643 3444555555566777 889999999832 211111 11222222
Q ss_pred CccCCeeEEEeecccCcccccc
Q 011836 222 NVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 222 ~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+++++||++|.|+.++
T Consensus 70 ----~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 70 ----GIPVVYVSAKERLGTKIL 87 (156)
T ss_pred ----CCcEEEEEccccccHHHH
Confidence 247899999999999884
No 369
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.14 E-value=2.1e-05 Score=63.12 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=51.8
Q ss_pred cCCeEEEEEEEeeeecCCCEEEEec---------CCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 285 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 285 ~~G~v~~G~v~sG~l~~g~~v~~~p---------~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
..|.++++||++|+|+.||.+++.. .....+|..|+.. ..++++|.|||+|++ .|++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 5688999999999999999998765 2345678888664 478999999999996 5553 367887
Q ss_pred EEe
Q 011836 352 VLS 354 (476)
Q Consensus 352 vl~ 354 (476)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 764
No 370
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.06 E-value=2.8e-05 Score=77.84 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=60.2
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc---cccccC-CCCchHHHHHHHHH--
Q 011836 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFE-KGGQTREHVMLAKT-- 180 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~---~e~~~~-~~~qt~e~l~~~~~-- 180 (476)
+-.|.......|..++..+.++|++|+..+.+.+......++++++|||..+-. .|..-. ....+.+.+..+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 344555555667788899999999999999999999999999999999988621 110000 00122222322221
Q ss_pred --cCCceEEEEEeeccC
Q 011836 181 --LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 --~~ip~~ivviNK~D~ 195 (476)
.+.| +++++||.|+
T Consensus 248 ~~~~~p-iil~~NK~D~ 263 (342)
T smart00275 248 WFANTS-IILFLNKIDL 263 (342)
T ss_pred cccCCc-EEEEEecHHh
Confidence 2566 9999999997
No 371
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.06 E-value=2.9e-05 Score=71.37 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
+++.+.||||||...+....+.. ...++-++||+||..+. .............++.. +++||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~--lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDG--LILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCE--EEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCce--EEEEeec
Confidence 45779999999976654333222 22688999999999873 23334445556677874 4699999
Q ss_pred CC
Q 011836 195 DH 196 (476)
Q Consensus 195 ~~ 196 (476)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.05 E-value=5.6e-06 Score=73.22 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=40.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|.+|+|||||+|+|+..... .....+|.|.......+ +
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~---~ 144 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL------------------------------KVGNVPGTTTSQQEVKL---D 144 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc------------------------------cccCCCCcccceEEEEe---c
Confidence 35688999999999999999999642211 01123566666655443 2
Q ss_pred eEEEEEeCCCC
Q 011836 123 TRFTILDAPGH 133 (476)
Q Consensus 123 ~~~~liDtPGh 133 (476)
..+.++||||.
T Consensus 145 ~~~~liDtPG~ 155 (155)
T cd01849 145 NKIKLLDTPGI 155 (155)
T ss_pred CCEEEEECCCC
Confidence 56999999993
No 373
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.05 E-value=2.7e-05 Score=68.97 Aligned_cols=83 Identities=16% Similarity=0.023 Sum_probs=53.0
Q ss_pred HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHH
Q 011836 140 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 217 (476)
Q Consensus 140 ~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~ 217 (476)
..+++..+|.+++|+|+..+.. .+.......+... +.| +|+|+||+|+. + ++....... . +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~--~--~~~~~~~~~---~-~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLV--P--TWVTARWVK---I-LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhcC--C--HHHHHHHHH---H-Hh
Confidence 3567889999999999988642 3344455555443 367 88999999993 2 222222222 2 22
Q ss_pred hcCCCccCCeeEEEeecccCcccccc
Q 011836 218 ASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 218 ~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. + ...++++||+++.|+.++
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSL 86 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHH
Confidence 21 1 123689999999998874
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.02 E-value=4.7e-06 Score=77.12 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=56.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.-+++++|-|..|||||+..|. |..+.- -..-+.|.........+++-+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~---g~~s~v----------------------------asyefttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLT---GTFSEV----------------------------AAYEFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhc---CCCCcc----------------------------ccccceeEEEecceEeccccc
Confidence 3489999999999999998873 221110 001112222222234467788
Q ss_pred EEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 011836 125 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 125 ~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~ 160 (476)
+.+.|.||..+ --+.++..++.|+.+++|+|+....
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 99999999433 2445566678999999999998764
No 375
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.02 E-value=3e-05 Score=69.78 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCCC-cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHH
Q 011836 130 APGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 208 (476)
Q Consensus 130 tPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~ 208 (476)
-||| .+.+.++...+..+|.+++|+|+..+.. ....+.+..+ .+.| .++++||+|+. + ++...+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~--~--~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLA--D--PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcC--C--hHHHHH-
Confidence 3676 3467777778899999999999987642 2222322222 3566 78999999993 2 211111
Q ss_pred HHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 209 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 209 ~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
...+++..+ .+++++|++++.|+.++.
T Consensus 67 ---~~~~~~~~~------~~vi~iSa~~~~gi~~L~ 93 (171)
T cd01856 67 ---WLKYFESKG------EKVLFVNAKSGKGVKKLL 93 (171)
T ss_pred ---HHHHHHhcC------CeEEEEECCCcccHHHHH
Confidence 112233222 368999999999998853
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.01 E-value=3e-05 Score=70.97 Aligned_cols=94 Identities=14% Similarity=-0.015 Sum_probs=55.4
Q ss_pred ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHH
Q 011836 135 SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 214 (476)
Q Consensus 135 ~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~ 214 (476)
.|...+...+..+|++++|+|+.+... ...+.+ .....+.| +++|+||+|+..........+..... .
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~ 90 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA--K 90 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH--H
Confidence 356677777889999999999987531 122222 22234666 88999999985322111111111100 0
Q ss_pred HHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 215 FLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 215 ~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+..++. ..+++++||++|+|++++
T Consensus 91 ~~~~~~~~---~~~i~~vSA~~~~gi~eL 116 (190)
T cd01855 91 AAAGLGLK---PKDVILISAKKGWGVEEL 116 (190)
T ss_pred HHhhcCCC---cccEEEEECCCCCCHHHH
Confidence 11222321 126899999999999885
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.94 E-value=4.6e-06 Score=73.43 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++++|+.|+|||||+|+|+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6889999999999999999964
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.94 E-value=7.1e-05 Score=67.38 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhh------hhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~------~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~ivviNK~ 193 (476)
.++.+.|+||||...+-...+..+ ..+|.+++|+|+..+. ...+.+ .+....++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 356789999999864432222221 2489999999997542 233333 333455654 4678999
Q ss_pred cCC
Q 011836 194 DDH 196 (476)
Q Consensus 194 D~~ 196 (476)
|..
T Consensus 150 D~~ 152 (173)
T cd03115 150 DGD 152 (173)
T ss_pred cCC
Confidence 983
No 379
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00011 Score=72.50 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=83.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..++.++|..|.|||||+|.|+... ...+.+ .........+..++......++-++
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~-l~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTD-LSGNRE---------------------VPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhh-ccCCcc---------------------cCCcccCccccceeeeeeeeecCCCeE
Confidence 5899999999999999999997541 111100 0001111122334444444444443
Q ss_pred eEEEEEeCCCCcChH-------------HHHHH-h-----------hh--hcCEEEEEEECCCC-ccccccCCCCchHHH
Q 011836 123 TRFTILDAPGHKSYV-------------PNMIS-G-----------AS--QADIGVLVISARKG-EFETGFEKGGQTREH 174 (476)
Q Consensus 123 ~~~~liDtPGh~~~~-------------~~~~~-~-----------~~--~~D~~ilVvda~~g-~~e~~~~~~~qt~e~ 174 (476)
.+++++||||..|++ ..... + .. ..+++|+.|..... .. +...+.
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~-------p~Di~~ 151 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLK-------PLDIEF 151 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCc-------HhhHHH
Confidence 468999999965532 11111 1 11 57899999987643 21 344444
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 175 l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
++.+. ..+. +|-||-|.|.. ..+.....+..+...+...++
T Consensus 152 Mk~l~-~~vN-iIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 152 MKKLS-KKVN-LIPVIAKADTL----TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHh-cccc-ccceeeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 33222 2455 78899999983 455677777888777776643
No 380
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.93 E-value=1e-05 Score=74.02 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=40.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+++++|.+|+|||||+|+|+...-.-.. ..+ ........|.|.+.....+. ..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~~-----------~~~~~~~~gtT~~~~~~~~~---~~ 181 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK-----------LKD-----------LLTTSPIPGTTLDLIKIPLG---NG 181 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc-----------ccc-----------ccccCCCCCeeeeeEEEecC---CC
Confidence 368999999999999999999743210000 000 00111245778877655542 25
Q ss_pred EEEEeCCCC
Q 011836 125 FTILDAPGH 133 (476)
Q Consensus 125 ~~liDtPGh 133 (476)
+.|+||||.
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 899999993
No 381
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.91 E-value=0.00013 Score=58.68 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=48.1
Q ss_pred EEEEEEE--ccC-CeEEEEEEEeeeecCCCEEEEecCC---------ceEEEEEEEEC----CeeeeeeCCCCeEEEEec
Q 011836 277 MPIIDKF--KDM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLS 340 (476)
Q Consensus 277 ~~i~~~~--~~~-G~v~~G~v~sG~l~~g~~v~~~p~~---------~~~~V~si~~~----~~~v~~a~aG~~v~i~l~ 340 (476)
..|..+. +.. |.++++||+||+|+.||.|++...+ ...+|..|... ..++++|.|||+|++ .
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v--~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--K 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--E
Confidence 3444444 233 5689999999999999999875321 34677788764 578999999999985 6
Q ss_pred cCCc
Q 011836 341 GIEE 344 (476)
Q Consensus 341 ~~~~ 344 (476)
|++.
T Consensus 81 gl~~ 84 (94)
T cd04090 81 GIDS 84 (94)
T ss_pred Ccch
Confidence 6544
No 382
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=6.9e-05 Score=74.94 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCCcCh----HHHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~----~~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
++.+.||||||.... +..+...+ ..+|..+||+||..+. ....+.+......++.. +++||+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 468999999996543 33333333 3578889999997652 23455555556677774 47999997
No 383
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.88 E-value=0.00019 Score=68.75 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=46.5
Q ss_pred cCCceEEEEEeeccCC-----CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 181 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 181 ~~ip~~ivviNK~D~~-----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
+|+| ++||++|+|.. +.+|..+.|+.+...+++|+-++|- ..|.+|++...|++-
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 4666 89999999972 3457788999999999999998874 689999999999876
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=5.7e-05 Score=75.82 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred eCCeEEEEEeCCCCc---ChHHHHHHhhh---hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---------CCc
Q 011836 120 TETTRFTILDAPGHK---SYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 184 (476)
Q Consensus 120 ~~~~~~~liDtPGh~---~~~~~~~~~~~---~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---------~ip 184 (476)
+.++.+.||||||.. ++....+..+. .++-.+||++|..+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 356789999999966 33444444443 345569999999873 2223333333322 233
Q ss_pred eEEEEEeeccC
Q 011836 185 KLLLVVNKMDD 195 (476)
Q Consensus 185 ~~ivviNK~D~ 195 (476)
. +++||+|.
T Consensus 285 ~--~I~TKlDE 293 (374)
T PRK14722 285 G--CILTKLDE 293 (374)
T ss_pred E--EEEecccc
Confidence 2 46899997
No 385
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.85 E-value=6.5e-05 Score=73.08 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCc-ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHH
Q 011836 131 PGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 209 (476)
Q Consensus 131 PGh~-~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~ 209 (476)
|||- +-.+.+...+..+|++|+|+||..+.. .........+ .+.| +|+|+||+|+ .+ ++..+...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL--~~--~~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADL--AD--PAVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEcccc--CC--HHHHHHHH
Confidence 7764 446667777889999999999987632 1222222222 2556 8899999999 32 21122211
Q ss_pred HHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 210 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 210 ~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
..++..+ .+++++|++++.|+..+.
T Consensus 71 ----~~~~~~~------~~vi~iSa~~~~gi~~L~ 95 (276)
T TIGR03596 71 ----KYFEEKG------IKALAINAKKGKGVKKII 95 (276)
T ss_pred ----HHHHHcC------CeEEEEECCCcccHHHHH
Confidence 2233222 368999999999998753
No 386
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.83 E-value=0.0003 Score=75.20 Aligned_cols=181 Identities=17% Similarity=0.234 Sum_probs=125.4
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCchHHH
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 204 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~ 204 (476)
.=-|+-|..+-+...+..+...+.-+=|+.+.-| +-+...+.++...+. +|+..| |.+.
T Consensus 390 ikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~--------- 449 (587)
T TIGR00487 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---------GITETDISLASASNA--IIIGFNVRPDA--------- 449 (587)
T ss_pred EEeCCcchHHHHHHHHHhhcccCCeEEEEEeecC---------CCchhhHHHHHhcCC--EEEEEecCCCH---------
Confidence 4458888877788888888778888888888877 467778888877764 456666 3332
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEEc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 284 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~ 284 (476)
..+...++.| ++++.-+- +.++.+. +.+.+..+..|.......-+..|..+|+
T Consensus 450 ------~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~ 502 (587)
T TIGR00487 450 ------TAKNVAEAEN------VDIRYYSV-----IYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFN 502 (587)
T ss_pred ------HHHHHHHHcC------CeEEEeCh-----HHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEe
Confidence 2223344433 34443321 2222111 3334444433333222233566677884
Q ss_pred --cCCeEEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEec
Q 011836 285 --DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 --~~G~v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 355 (476)
..|.++.++|..|+|++|..+.+...+. ..+|.||+.+++++.++..|+-|++.+.+. .+++.||+|-.
T Consensus 503 ~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 503 VPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred cCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999988764 467999999999999999999999999976 67999999864
No 387
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.83 E-value=1.8e-05 Score=78.54 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=41.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+...+++++|-||+|||||+|+|+..... ...+..|+|-.......+
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~------------------------------~~s~~PG~Tk~~q~i~~~-- 176 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVA------------------------------KTSNRPGTTKGIQWIKLD-- 176 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccce------------------------------eeCCCCceecceEEEEcC--
Confidence 345678999999999999999999643321 111235777776655543
Q ss_pred CeEEEEEeCCC
Q 011836 122 TTRFTILDAPG 132 (476)
Q Consensus 122 ~~~~~liDtPG 132 (476)
..+.++||||
T Consensus 177 -~~i~LlDtPG 186 (322)
T COG1161 177 -DGIYLLDTPG 186 (322)
T ss_pred -CCeEEecCCC
Confidence 3499999999
No 388
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=1.9e-05 Score=69.17 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.+.||||||.. ......+..+|.+++|.....+ .....++. ..+.... +++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 36789999999964 3334578899999999977633 22333222 2233333 57999998
No 389
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.82 E-value=0.00011 Score=76.08 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=44.9
Q ss_pred cCCceEEEEEeeccCC-----CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 181 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 181 ~~ip~~ivviNK~D~~-----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
+|+| ++||++|.|.. ..+|.++.|+.+...|+.++-++|- .+|.+|.+...|+..
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDL 254 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHH
Confidence 3577 99999999963 2357888999999999999988874 688899988888765
No 390
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.82 E-value=0.00044 Score=76.00 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=123.7
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCchHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 205 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~~ 205 (476)
=-|+-|..+-+...+..+..-++-+=|+.+.-| +-+...+.++...+. +|+..| |.+.
T Consensus 593 kad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---------~it~~Dv~la~~~~a--~ii~Fnv~~~~---------- 651 (787)
T PRK05306 593 KADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---------AITESDVTLAAASNA--IIIGFNVRPDA---------- 651 (787)
T ss_pred EeCCcchHHHHHHHHHhhcccCCceEEEeeccC---------CCCHHHHHHHHhcCC--EEEEEcCCCCH----------
Confidence 347778777777888878778888888888777 457777777777663 456666 3331
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEEc-
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 284 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~- 284 (476)
.+....+..| +.+...+- |.++.+. +.+.+..+..|.....-.-...|..+|+
T Consensus 652 -----~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~ 705 (787)
T PRK05306 652 -----KARKLAEQEG------VDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKV 705 (787)
T ss_pred -----HHHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEec
Confidence 2222333333 34443321 1121111 2333333333333333333567778884
Q ss_pred -cCCeEEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEec
Q 011836 285 -DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 -~~G~v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 355 (476)
..|.++.++|..|.|+.|..+.+...+. ..+|.||.++.+++.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 706 ~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 706 SKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4689999999999999999999998775 568999999999999999999999999976 67999999864
No 391
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.81 E-value=0.00012 Score=64.73 Aligned_cols=76 Identities=28% Similarity=0.240 Sum_probs=47.9
Q ss_pred CEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCC
Q 011836 148 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 226 (476)
Q Consensus 148 D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 226 (476)
|++++|+|+..+.. ....... ..+...+.| +|+|+||+|+ .+ ++...+... . +.... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl--~~--~~~~~~~~~---~-~~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADL--VP--KEVLRKWLA---Y-LRHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhc--CC--HHHHHHHHH---H-HHhhC-----C
Confidence 78999999987642 2233333 345566777 8899999999 32 222222111 1 22221 2
Q ss_pred eeEEEeecccCccccccc
Q 011836 227 VQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 227 ~~iipiSa~~g~~i~~~~ 244 (476)
.+++++||++|.|+.++.
T Consensus 60 ~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 60 TIPFKISATNGQGIEKKE 77 (155)
T ss_pred ceEEEEeccCCcChhhHH
Confidence 368999999999998853
No 392
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.80 E-value=2.2e-05 Score=68.22 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll 66 (476)
+++++|.+|+|||||+|+|+
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999995
No 393
>PRK12288 GTPase RsgA; Reviewed
Probab=97.79 E-value=2.4e-05 Score=78.28 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++++|.+|+|||||+|+|+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 478999999999999999963
No 394
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.78 E-value=5.5e-05 Score=72.17 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=55.1
Q ss_pred HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 142 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 142 ~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
..++.+|.+++|+|+.+..+ ++ ....+.+..+...++| +++|+||+|+... . . ...+....+++.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~--~---~~~~~~~~~~~~g- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--E--D---MEKEQLDIYRNIG- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccCCC--H--H---HHHHHHHHHHHCC-
Confidence 35789999999999987541 11 1344445555667888 7899999999321 1 1 1112222334444
Q ss_pred CccCCeeEEEeecccCccccccc
Q 011836 222 NVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 222 ~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.+++.+||++|.|+.++.
T Consensus 98 -----~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 98 -----YQVLMTSSKNQDGLKELI 115 (245)
T ss_pred -----CeEEEEecCCchhHHHHH
Confidence 479999999999998853
No 395
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00014 Score=70.87 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=84.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhhcccEEEeee-EEEEe--
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGR-AHFET-- 120 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~-- 120 (476)
+-|.++|.-..||||+++.|+... .. ++ ..|. +.-.+..+|-...++...|.+..+.. .+|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~d--yp--g~--------riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQD--YP--GL--------RIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCC--CC--cc--------ccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence 568899999999999999997421 00 00 1121 11223335555555666666665531 11110
Q ss_pred ---------------C---CeEEEEEeCCCC-----------cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch
Q 011836 121 ---------------E---TTRFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 121 ---------------~---~~~~~liDtPGh-----------~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt 171 (476)
. -.+++|+||||. -+|..-..--+..+|.++|+.|+..-.. ...+
T Consensus 127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI------sdEf 200 (532)
T KOG1954|consen 127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI------SDEF 200 (532)
T ss_pred hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc------cHHH
Confidence 1 146899999993 2455555555678999999999987432 3677
Q ss_pred HHHHHHHHHcCCceEEEEEeeccC
Q 011836 172 REHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 172 ~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+..++...-+ +=||+||.|.
T Consensus 201 ~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 201 KRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHhhCCcce-eEEEeccccc
Confidence 8888888776655 7789999999
No 396
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.77 E-value=0.00052 Score=74.78 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=127.2
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCchHH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKE 203 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~ 203 (476)
+.=-|+-|...-+...+..+....+-+=|+.+.-| +-|...+.++...+. +|+..| |.+.
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---------~it~~Dv~lA~~~~a--~ii~Fnv~~~~-------- 606 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLG---------EVTETDVEFASTTNA--EILAFNTNLAP-------- 606 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---------CCCHHHHHHHHhcCC--EEEEeeCCCCH--------
Confidence 34468889888888888888777888888888877 467788888887764 456666 3331
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE
Q 011836 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 283 (476)
.++...+..| +.+..-+- +.++.+. +.+.+..+..|.......-+..|..+|
T Consensus 607 -------~~~~~a~~~~------v~i~~~~i-----IY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF 658 (742)
T CHL00189 607 -------GAKKAARKLN------IIIKEYQV-----IYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVF 658 (742)
T ss_pred -------HHHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEE
Confidence 2222333333 34443221 2222111 333444444444333344467778888
Q ss_pred c-cCCeEEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEec
Q 011836 284 K-DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 284 ~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 355 (476)
+ ..|.++.++|.+|.|+.|..+.+...+. ..+|.||+++.+++.++..|+-||+.+.+. .+++.||+|-.
T Consensus 659 ~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 659 PLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred ecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 4 3489999999999999999999998874 467999999999999999999999999975 56999999864
No 397
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.77 E-value=3.7e-05 Score=75.17 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=39.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|.+|+|||||+|+|+..... ......|+|........ +
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~ 165 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKL---G 165 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEe---C
Confidence 34578999999999999999999532110 01123577777643332 3
Q ss_pred eEEEEEeCCCC
Q 011836 123 TRFTILDAPGH 133 (476)
Q Consensus 123 ~~~~liDtPGh 133 (476)
..+.++||||.
T Consensus 166 ~~~~l~DtPGi 176 (287)
T PRK09563 166 KGLELLDTPGI 176 (287)
T ss_pred CcEEEEECCCc
Confidence 56899999995
No 398
>PRK12289 GTPase RsgA; Reviewed
Probab=97.76 E-value=0.00011 Score=73.49 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=54.8
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
++.+|.+++|+|+.+..+. ..+..+.+..+...++| +|+|+||+|+. + .+.. ......+...|+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DLv--~--~~~~----~~~~~~~~~~g~-- 150 (352)
T PRK12289 87 VANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADLV--S--PTEQ----QQWQDRLQQWGY-- 150 (352)
T ss_pred hhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhcC--C--hHHH----HHHHHHHHhcCC--
Confidence 6889999999999865421 01334555556667888 88999999993 2 2222 222333445544
Q ss_pred cCCeeEEEeecccCccccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~~ 244 (476)
+++++||++|.|+.++.
T Consensus 151 ----~v~~iSA~tg~GI~eL~ 167 (352)
T PRK12289 151 ----QPLFISVETGIGLEALL 167 (352)
T ss_pred ----eEEEEEcCCCCCHHHHh
Confidence 68999999999998753
No 399
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.74 E-value=0.00027 Score=69.74 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=61.9
Q ss_pred hcccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH--
Q 011836 106 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT-- 180 (476)
Q Consensus 106 ~~g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~---~e~~~~~~~qt~e~l~~~~~-- 180 (476)
.|-.|..+....|+..+..+-++|++|+..=.+.++...-.++++|++++.++-. +|... .....+-+.+...
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~--~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDET--TNRMHESLKLFESIC 255 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccc--hhHHHHHHHHHHHHh
Confidence 4555666777788999999999999999998999999999999999999987632 11100 0122222222222
Q ss_pred -----cCCceEEEEEeeccC
Q 011836 181 -----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 -----~~ip~~ivviNK~D~ 195 (476)
...+ +|+++||.|+
T Consensus 256 n~~~F~~ts-iiLFLNK~DL 274 (354)
T KOG0082|consen 256 NNKWFANTS-IILFLNKKDL 274 (354)
T ss_pred cCcccccCc-EEEEeecHHH
Confidence 1345 9999999998
No 400
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.74 E-value=3.9e-05 Score=74.62 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+..+++++|.+|+|||||+|+|+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999999995
No 401
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.72 E-value=4e-05 Score=73.07 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++++|++|+|||||+|+|+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999964
No 402
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.71 E-value=4.9e-05 Score=68.37 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=38.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+++++|.+|+|||||+++|+..... ......|.|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3468999999999999999999531110 001124566665544443 5
Q ss_pred EEEEEeCCCC
Q 011836 124 RFTILDAPGH 133 (476)
Q Consensus 124 ~~~liDtPGh 133 (476)
.+.++||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00052 Score=70.66 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcChH-------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~-------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
.++.+.||||||+..+- ..++......+-..||++++.+. ....+.+......++.+ +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 35789999999975542 22222122345778999998763 23444455555566643 689999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 97
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00069 Score=70.45 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=39.2
Q ss_pred CCeEEEEEeCCCCcChHHHH------HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~------~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.+.||||||...+-... +... .....+||+++..+. ....+.+......+. .-+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~--~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHF--------SDLDEVVRRFAHAKP--QGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCCh--------hHHHHHHHHHHhhCC--eEEEEecCc
Confidence 45789999999965432221 1222 234568889988653 234444444444444 347999999
Q ss_pred C
Q 011836 195 D 195 (476)
Q Consensus 195 ~ 195 (476)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 7
No 405
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.69 E-value=7.2e-05 Score=66.36 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
-++++|..|||||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4679999999999999998754
No 406
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.68 E-value=0.00015 Score=70.96 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCcC-hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHH
Q 011836 130 APGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 208 (476)
Q Consensus 130 tPGh~~-~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~ 208 (476)
-|||-. -.+.+...+..+|++|+|+|+..+.. ....+...... +.| +++|+||+|+ .+ ....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL--~~--~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDL--AD--PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhc--CC--HHHHHH-
Confidence 377643 35556667789999999999987642 22222223222 566 8899999998 32 221222
Q ss_pred HHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 209 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 209 ~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
...++...+ .+++++|++++.|+..+.
T Consensus 72 ---~~~~~~~~~------~~vi~vSa~~~~gi~~L~ 98 (287)
T PRK09563 72 ---WIEYFEEQG------IKALAINAKKGQGVKKIL 98 (287)
T ss_pred ---HHHHHHHcC------CeEEEEECCCcccHHHHH
Confidence 222233222 368999999999988753
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00036 Score=70.74 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHHhhh-----hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 121 ETTRFTILDAPGHKSY----VPNMISGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~~~~~~-----~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
.++.+.||||||.... +..+..-+. ...-.+||+||..+. ....+.+......++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678899999997533 222222121 234689999999873 24555556566678874 4799
Q ss_pred eccC
Q 011836 192 KMDD 195 (476)
Q Consensus 192 K~D~ 195 (476)
|+|.
T Consensus 368 KLDE 371 (432)
T PRK12724 368 KLDE 371 (432)
T ss_pred cccC
Confidence 9997
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00014 Score=71.41 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=53.6
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
++.+|.+++|+|+.+..+. .....+.+..+...++| +++|+||+|+. + ..+... .....+...|
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~--~-~~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLL--D-DLEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcC--C-CHHHHH----HHHHHHHHCC---
Confidence 6799999999999765321 01223445556677888 78999999993 2 112221 2223344444
Q ss_pred cCCeeEEEeecccCcccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++++||+++.|+.++
T Consensus 142 ---~~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDEL 158 (298)
T ss_pred ---CeEEEEeCCCCccHHHH
Confidence 37999999999999874
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.00029 Score=72.42 Aligned_cols=62 Identities=24% Similarity=0.421 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCcChHHHH------HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccC
Q 011836 123 TRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~------~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~ 195 (476)
+.+.||||||...+-..+ +..+..+|.++||+|+..| ....+.+.... .+++. -+++||+|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---------q~av~~a~~F~~~l~i~--gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---------QQAKNQAKAFHEAVGIG--GIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---------HHHHHHHHHHHhcCCCC--EEEEecccC
Confidence 478999999976653333 2334578999999999876 22333333222 23443 368899996
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0003 Score=71.24 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHHhhhh--cC-EEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSY----VPNMISGASQ--AD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~~~~~~~--~D-~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
.++.+.||||||.... +..+...+.. ++ -.+||+||+.+. ....+.+.....+++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 4678999999996442 2233333332 23 689999999873 24445555555567774 479999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 323 De 324 (388)
T PRK12723 323 DE 324 (388)
T ss_pred cC
Confidence 97
No 411
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.64 E-value=0.00016 Score=72.13 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCC
Q 011836 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~ 158 (476)
..+.++|.||... .-...++-++.+|++++||++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999432 45567777899999999999864
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00021 Score=72.85 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=42.5
Q ss_pred eCCeEEEEEeCCCCcChHHHHH---Hhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 120 TETTRFTILDAPGHKSYVPNMI---SGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~---~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
..++.+.+|||+|......... ..+ ...+-.+||+||..+. ....+.+......++.. +++||+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~--~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHG--CIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEee
Confidence 3567899999999665433222 222 2355788999999762 23344444555677774 479999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 337 DE 338 (420)
T PRK14721 337 DE 338 (420)
T ss_pred eC
Confidence 97
No 413
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=7.2e-05 Score=71.52 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.....++.++|-||.|||||+|++........ .+. ....+.|+|+.+....--.+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~---------k~a----------------~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK---------KAA----------------RVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc---------cce----------------eccCCCCceeeehhheEecc
Confidence 34678999999999999999999854332211 000 12246899999877544456
Q ss_pred CeEEEEEeCCC
Q 011836 122 TTRFTILDAPG 132 (476)
Q Consensus 122 ~~~~~liDtPG 132 (476)
...+.++||||
T Consensus 195 rp~vy~iDTPG 205 (335)
T KOG2485|consen 195 RPPVYLIDTPG 205 (335)
T ss_pred CCceEEecCCC
Confidence 67799999999
No 414
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=6.4e-05 Score=72.35 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
...+++|+.|+|||||+|+|+
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhC
Confidence 377899999999999999995
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.60 E-value=0.00027 Score=70.63 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=75.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchH------HHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~------~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
.+...|+++|++|+||||.+-.|.+........ ++..|.=.+.+ .-..|+.+|+ +.+.....
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E---QLk~Ya~im~---------vp~~vv~~ 268 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE---QLKTYADIMG---------VPLEVVYS 268 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH---HHHHHHHHhC---------CceEEecC
Confidence 347899999999999999998886544311110 00000000000 0011333332 33333222
Q ss_pred E-------EEeCCeEEEEEeCCCCcChHHHHHHh----hh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC
Q 011836 117 H-------FETETTRFTILDAPGHKSYVPNMISG----AS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 183 (476)
Q Consensus 117 ~-------~~~~~~~~~liDtPGh~~~~~~~~~~----~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i 183 (476)
. ....++.+.|+||.|+..+-...+.. +. ...-..||++|+..- ...++.+......++
T Consensus 269 ~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i 340 (407)
T COG1419 269 PKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPI 340 (407)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCc
Confidence 1 11246789999999977653333332 22 345567788888652 355677777778888
Q ss_pred ceEEEEEeeccCC
Q 011836 184 TKLLLVVNKMDDH 196 (476)
Q Consensus 184 p~~ivviNK~D~~ 196 (476)
..+ ++||+|..
T Consensus 341 ~~~--I~TKlDET 351 (407)
T COG1419 341 DGL--IFTKLDET 351 (407)
T ss_pred cee--EEEccccc
Confidence 854 68999973
No 416
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.60 E-value=7.4e-05 Score=75.42 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=52.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.++.++|.+|+|||||+|+|+........ ........|.|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------------~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------------VITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------------eeeecCCCCeEeeEEEEEe---CCCC
Confidence 68999999999999999999753221000 0011124677877654433 2346
Q ss_pred EEEeCCCCcChH--HHHHH-----h---hhhcCEEEEEEECCCCccc
Q 011836 126 TILDAPGHKSYV--PNMIS-----G---ASQADIGVLVISARKGEFE 162 (476)
Q Consensus 126 ~liDtPGh~~~~--~~~~~-----~---~~~~D~~ilVvda~~g~~e 162 (476)
.++||||....- ...+. . -.......+.++.....+-
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ 253 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFL 253 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEE
Confidence 899999954321 11111 1 1245667777777766553
No 417
>PRK13796 GTPase YqeH; Provisional
Probab=97.59 E-value=6.9e-05 Score=75.75 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=39.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.++.++|.+|+|||||+|+|+....... +.....+.+|.|.+.....+. ...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~-------------------------~~~~~s~~pGTT~~~~~~~l~---~~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEK-------------------------DVITTSRFPGTTLDKIEIPLD---DGS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCcc-------------------------ceEEecCCCCccceeEEEEcC---CCc
Confidence 5899999999999999999974321000 000112357788876555443 224
Q ss_pred EEEeCCCC
Q 011836 126 TILDAPGH 133 (476)
Q Consensus 126 ~liDtPGh 133 (476)
.++||||.
T Consensus 213 ~l~DTPGi 220 (365)
T PRK13796 213 FLYDTPGI 220 (365)
T ss_pred EEEECCCc
Confidence 89999995
No 418
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.54 E-value=0.00045 Score=70.67 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=57.5
Q ss_pred cccEEEeeeEEEEe-CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH--
Q 011836 107 KGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT-- 180 (476)
Q Consensus 107 ~g~ti~~~~~~~~~-~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~---~e~~~~~~~qt~e~l~~~~~-- 180 (476)
|..|..+....|.. .+..+.++|+.|+..-.+.|+..+..++++|+||+..+-. .|..- .....+-+.+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~--~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN--TNRLHESLNLFESIC 296 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT--SBHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch--HHHHHHHHHHHHHHH
Confidence 44455556667888 8899999999999998999999999999999999976421 11110 1223333433332
Q ss_pred ----c-CCceEEEEEeeccC
Q 011836 181 ----L-GVTKLLLVVNKMDD 195 (476)
Q Consensus 181 ----~-~ip~~ivviNK~D~ 195 (476)
+ +.| +|+++||+|+
T Consensus 297 ~~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 297 NNPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp TSGGGTTSE-EEEEEE-HHH
T ss_pred hCcccccCc-eEEeeecHHH
Confidence 2 455 9999999997
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00041 Score=69.27 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCcChHHHHHHh----h--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISG----A--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~----~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
++.+.||||||...+....+.. . ..+|..+||+++.... .+..+.+......++.. +++||+|.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEcccC
Confidence 5789999999975543333322 2 2457778888875431 12333333334456663 57999997
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.54 E-value=0.00067 Score=62.59 Aligned_cols=65 Identities=20% Similarity=0.391 Sum_probs=49.4
Q ss_pred CCeEEEEEeCC-CCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAP-GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtP-Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
+.+.+.++||- |.+.|-+-+ +..+|.+|+|+|++...+ ...++.-.++..++++++.+++||+|.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 35789999984 555555433 457899999999987543 355667788888998889999999996
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=97.54 E-value=0.00039 Score=71.34 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHH--hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~~~--~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.|+||||.... ...+.. ....+|.++||+|+..| ....+.+.... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 3577999999995433 222211 12368889999999765 22333333322 34554 3578999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 95
No 422
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.00029 Score=67.87 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=43.8
Q ss_pred CeEEEEEeCCCCcCh----HHHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~----~~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
++.+.||||||...+ +..+...+ ..+|-.+||+||..+. .+..+.+......++.. +++||+|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 578999999997643 33333322 3578899999998652 24455555556677774 57999997
No 423
>PRK12289 GTPase RsgA; Reviewed
Probab=97.53 E-value=9.5e-05 Score=73.98 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++++|.+|+|||||+|+|+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcC
Confidence 489999999999999999963
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.00021 Score=73.22 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.|+||||...+-...+.. ...+|.++||+|+..+ ....+.+.... ..++.. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCCE--EEEeCc
Confidence 45679999999964432222221 2358999999999865 23344443333 456653 579999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 95
No 425
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=0.00014 Score=71.02 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++++|++|+|||||+|.|+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999964
No 426
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.48 E-value=0.00023 Score=64.22 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=44.5
Q ss_pred CeEEEEEeCCC------CcChHHHHHHhhhhcC---EEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 122 TTRFTILDAPG------HKSYVPNMISGASQAD---IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 122 ~~~~~liDtPG------h~~~~~~~~~~~~~~D---~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
...+.++|+|| |...+++.+..+.+-+ ++++++|+.--+ ++ .+.-......+..+..+.+|| |=+++|
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v-D~-~KfiSG~lsAlsAMi~lE~P~-INvlsK 173 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV-DS-TKFISGCLSALSAMISLEVPH-INVLSK 173 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh-hH-HHHHHHHHHHHHHHHHhcCcc-hhhhhH
Confidence 35689999999 5566778877776533 567777765321 00 000012233344555678995 679999
Q ss_pred ccCC
Q 011836 193 MDDH 196 (476)
Q Consensus 193 ~D~~ 196 (476)
||+.
T Consensus 174 MDLl 177 (273)
T KOG1534|consen 174 MDLL 177 (273)
T ss_pred HHHh
Confidence 9984
No 427
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.48 E-value=0.00095 Score=60.03 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.2
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.|||||+.... .....+..+|.+|+++++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986544 34566789999999998886543 345555566666677767789999996
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.43 E-value=0.00067 Score=68.51 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=61.0
Q ss_pred CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHH
Q 011836 133 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 212 (476)
Q Consensus 133 h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l 212 (476)
.++|...+......+|++++|+|+.+.. ......+.... .+.| +++|+||+|+...+.. .+++.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~~---~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSVN---LSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCCC---HHHHHHHH
Confidence 4467665444456889999999986642 22223222211 1455 8899999998432211 23444555
Q ss_pred HHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 213 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 213 ~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..+++..|+. ...++++||++|.|+.++.+
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 5566666653 12589999999999988543
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00093 Score=67.07 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=71.7
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCC-cc----------hHH-HHHHHHHHhhcCccchhhhhhcCCchhhh
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ-VD----------DRT-IQKYEKEAKDKSRESWYMAYIMDTNEEER 105 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~-~~----------~~~-~~~~~~~~~~~g~~~~~~~~~~d~~~~e~ 105 (476)
.....+++..|.++|-.||||||.++.|.+..-. -. +.. ..-++.-....|-+.| .. -...++.+.
T Consensus 93 ~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f-~~-~~~~~Pv~I 170 (451)
T COG0541 93 LNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF-GS-GTEKDPVEI 170 (451)
T ss_pred cccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee-cC-CCCCCHHHH
Confidence 3334667788999999999999999998542211 00 000 0011111111110000 00 000111110
Q ss_pred -hcccEEEeeeEEEEeCCeEEEEEeCCCCcCh----HHHHH--HhhhhcCEEEEEEECCCCccccccCCCCchHH-HH-H
Q 011836 106 -IKGKTVEVGRAHFETETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTRE-HV-M 176 (476)
Q Consensus 106 -~~g~ti~~~~~~~~~~~~~~~liDtPGh~~~----~~~~~--~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~l-~ 176 (476)
.+ +...+....+.+.|+||.|.... +.++. .....+|=++||+||..| |.-. .. .
T Consensus 171 ak~------al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~a 234 (451)
T COG0541 171 AKA------ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKA 234 (451)
T ss_pred HHH------HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHH
Confidence 00 00112234578999999995443 33332 234589999999999987 3322 22 2
Q ss_pred HHHHcCCceEEEEEeeccC
Q 011836 177 LAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 177 ~~~~~~ip~~ivviNK~D~ 195 (476)
+-..+++. - |++||+|-
T Consensus 235 F~e~l~it-G-vIlTKlDG 251 (451)
T COG0541 235 FNEALGIT-G-VILTKLDG 251 (451)
T ss_pred HhhhcCCc-e-EEEEcccC
Confidence 22345665 3 58999996
No 430
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.43 E-value=0.0005 Score=67.20 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=52.2
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
+..+|.+++|+|+.++.+. + ....+.+..+...++| +++|+||+|+... . +. .. ........|
T Consensus 76 ~anvD~vllV~d~~~p~~s--~---~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~-~~----~~-~~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN--P---RLLDRYLVAAEAAGIE-PVIVLTKADLLDD--E-EE----EL-ELVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC--H---HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--H-HH----HH-HHHHHHhCC---
Confidence 5789999999999876420 0 1334455556677888 7899999999321 1 11 11 111222333
Q ss_pred cCCeeEEEeecccCcccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++++||+++.|++++
T Consensus 139 ---~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 ---YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred ---CeEEEEECCCCccHHHH
Confidence 47999999999998774
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0014 Score=53.78 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEee
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip---~~ivviNK 192 (476)
.+.++|||+..... ....+..+|.+++++++..... ..+.+.+..+...+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 78999999976543 4456789999999998886543 3556666667666654 67888886
No 432
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.37 E-value=0.001 Score=61.25 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCC------CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH----HHHHHHHHcCCceEEEEE
Q 011836 121 ETTRFTILDAPG------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR----EHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 121 ~~~~~~liDtPG------h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~----e~l~~~~~~~ip~~ivvi 190 (476)
...++.++|+|| |.+-....++.+...|+-+.+|.-.+..+=+. -.+.. -.+.-+..+..|| |=|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~---p~~~iS~lL~sl~tMl~melph-VNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSD---PSKFISSLLVSLATMLHMELPH-VNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCC---hHHHHHHHHHHHHHHHhhcccc-hhhh
Confidence 467899999999 45557777888888887777665544332100 01111 1222233467886 4689
Q ss_pred eeccCC
Q 011836 191 NKMDDH 196 (476)
Q Consensus 191 NK~D~~ 196 (476)
.|+|+.
T Consensus 171 SK~Dl~ 176 (290)
T KOG1533|consen 171 SKADLL 176 (290)
T ss_pred hHhHHH
Confidence 999983
No 433
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00031 Score=64.61 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|.++|+--+|||++-....+...- ..+ .-.|....+|.+. +...=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--neT------------------------lflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--NET------------------------LFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--Cce------------------------eEeeccCcccHhh----hhhhhcce
Confidence 45999999999999998766432210 000 0011111122211 11112457
Q ss_pred EEEeCCCCcChHHHHH---HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEeeccCCCCC
Q 011836 126 TILDAPGHKSYVPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 199 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~---~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip---~~ivviNK~D~~~~~ 199 (476)
.+||-||+-+|..... .-.+.+.+.++||||.+.-++ +.++-|+...+++.+. .+=|++-|.|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 8999999888754432 234688999999999987653 5677788888887542 267899999975444
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~ 235 (476)
+.-+....+.+....-|+..|.. +-.+.+.-+|-.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIy 186 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIY 186 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeec
Confidence 44444555666666677777764 223455555543
No 434
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.36 E-value=0.00025 Score=62.59 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
...+++++|.+++|||||+++|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999995
No 435
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.36 E-value=0.0013 Score=56.86 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=44.4
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~ 195 (476)
+.+.++|+|+... ......+..+|.++++++++.... ..+...+..+.. .+.+++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998643 334567889999999999876532 234444544433 334457899999985
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0011 Score=65.29 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=42.6
Q ss_pred EEeCCeEEEEEeCCCCcC----hHHHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEE
Q 011836 118 FETETTRFTILDAPGHKS----YVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLV 189 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~----~~~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivv 189 (476)
|..+++.++|+||.|... ...+|.... -.+|-+|+|+||.-| |..+....+- ..++- -|+
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 344678999999999433 344444432 369999999999987 4444322111 23444 367
Q ss_pred EeeccC
Q 011836 190 VNKMDD 195 (476)
Q Consensus 190 iNK~D~ 195 (476)
+||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999995
No 437
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.28 E-value=0.00054 Score=66.31 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=28.1
Q ss_pred eEEEEEeCCCC-------cChHHHHHHhhhhcCEEEEEEECCCC
Q 011836 123 TRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 123 ~~~~liDtPGh-------~~~~~~~~~~~~~~D~~ilVvda~~g 159 (476)
-.+++.|++|. .-.-...++-++.+|+++-||++-..
T Consensus 84 a~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 84 AFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred eeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 35899999993 23455566778999999999998653
No 438
>PRK12288 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.0011 Score=66.46 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=51.9
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
++.+|.+++|.+...... + ....+.+..+...++| +++|+||+|+... .+ .... ......+..+|
T Consensus 118 aANvD~vlIV~s~~p~~s---~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~--~~--~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPELS---L---NIIDRYLVACETLGIE-PLIVLNKIDLLDD--EG--RAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCCC---H---HHHHHHHHHHHhcCCC-EEEEEECccCCCc--HH--HHHH-HHHHHHHHhCC---
Confidence 467999988888764321 1 2334445556677888 7789999999422 11 1111 22222344444
Q ss_pred cCCeeEEEeecccCcccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++++||+++.|+.++
T Consensus 183 ---~~v~~vSA~tg~GideL 199 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEEL 199 (347)
T ss_pred ---CeEEEEeCCCCcCHHHH
Confidence 47999999999999874
No 439
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.27 E-value=0.0024 Score=51.14 Aligned_cols=75 Identities=28% Similarity=0.383 Sum_probs=57.4
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
..|.++. ++.|.+++..|.+|+|++||.+..+. ...+|++|... .+++++|.||+.|.| .|++.. ...|+.+
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~-P~aGd~~ 77 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGV-PQAGDKF 77 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCCCC-CCCCCEE
Confidence 3455554 57899999999999999999999954 45699999887 588999999999986 455331 1456666
Q ss_pred ecC
Q 011836 354 SSV 356 (476)
Q Consensus 354 ~~~ 356 (476)
...
T Consensus 78 ~~~ 80 (95)
T cd03702 78 LVV 80 (95)
T ss_pred EEe
Confidence 543
No 440
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.26 E-value=0.00033 Score=72.58 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=39.6
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHh---hh---hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 120 TETTRFTILDAPGHKSYVPNMISG---AS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~---~~---~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
..++.+.+|||+|.......+... +. .+.-.+||+|+..+. ....+.+......++.. +++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeCC
Confidence 345679999999954333222121 11 134478999998762 23344445555566653 468999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 402 De 403 (484)
T PRK06995 402 DE 403 (484)
T ss_pred CC
Confidence 96
No 441
>PRK01889 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.0012 Score=66.62 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=53.5
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
++.+|.+++|+++.... + .....+.+..+...+++ .++|+||+|+. +..+ +..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~-----~-~~~ldr~L~~a~~~~i~-piIVLNK~DL~--~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDF-----N-LRRIERYLALAWESGAE-PVIVLTKADLC--EDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCC-----C-hhHHHHHHHHHHHcCCC-EEEEEEChhcC--CCHH----HHHHHHHHh--CC----
Confidence 47899999999997542 2 12455666777889998 57899999994 2111 122223222 22
Q ss_pred cCCeeEEEeecccCcccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~ 243 (476)
..+++++|+++|.|+.++
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 357999999999998874
No 442
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.19 E-value=0.0041 Score=61.61 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+.+...+.|.-|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566789999999999999999853
No 443
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.012 Score=60.68 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=65.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC-c--eEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-A--QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~-~--~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
..+..+| +..|.++.++|..|.++.|..+.+...+ . ..+|.|++.+++++.++.+|+-|++.+.| ..+++.||
T Consensus 416 ~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD 493 (509)
T COG0532 416 AEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGD 493 (509)
T ss_pred eEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCC
Confidence 3344444 4689999999999999999999988544 3 37999999999999999999999999997 46799999
Q ss_pred EEec
Q 011836 352 VLSS 355 (476)
Q Consensus 352 vl~~ 355 (476)
+|-.
T Consensus 494 ~le~ 497 (509)
T COG0532 494 ILEV 497 (509)
T ss_pred EEEE
Confidence 9854
No 444
>PRK13796 GTPase YqeH; Provisional
Probab=97.17 E-value=0.0021 Score=65.00 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=58.5
Q ss_pred ChHHHHHHhhhhcC-EEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHH
Q 011836 135 SYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 213 (476)
Q Consensus 135 ~~~~~~~~~~~~~D-~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~ 213 (476)
+|. .++..+...| .+++|||+.+.. ......+.... -+.| +++|+||+|+...+.. .+++.+.+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~~---~~~i~~~l~ 123 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSVK---KNKVKNWLR 123 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCccC---HHHHHHHHH
Confidence 444 4677777777 999999998742 22333332222 2556 8899999999432211 223334444
Q ss_pred HHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 214 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 214 ~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.+.+..|+. ...++++||++|.|+.++.+
T Consensus 124 ~~~k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 124 QEAKELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HHHHhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 556666653 12689999999999988543
No 445
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.16 E-value=6.3e-05 Score=66.30 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=97.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe-
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~- 123 (476)
.-.+.|+|.-++|||+++.+-++..- .+++ |. -|-++....-+.|+.+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nf----------------------s~~y--------RA-tIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNF----------------------SYHY--------RA-TIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHH----------------------HHHH--------HH-HHhHHHHHHHhccChHH
Confidence 34788999999999999987764321 0010 00 0111111122334433
Q ss_pred --EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-H----cC--CceEEEEEeecc
Q 011836 124 --RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T----LG--VTKLLLVVNKMD 194 (476)
Q Consensus 124 --~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~----~~--ip~~ivviNK~D 194 (476)
++.|+|..|+++|-.++--+...|.++.+|+|.+.... |+ + +....+.+. . .| +| ++...||+|
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~t---fe--~-~skwkqdldsk~qLpng~Pv~-~vllankCd 146 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLT---FE--P-VSKWKQDLDSKLQLPNGTPVP-CVLLANKCD 146 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccc---cc--H-HHHHHHhccCcccCCCCCcch-heeccchhc
Confidence 46899999999998777667789999999999887643 22 1 222211111 1 13 34 677889999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . +....+.-..+..+.+..||. .+..+|++.+.|+.+.
T Consensus 147 ~--e---~~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 147 Q--E---KSAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEA 185 (229)
T ss_pred c--C---hHhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHH
Confidence 7 2 333445556677788888875 6899999999999885
No 446
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.0085 Score=58.21 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
......|+++|..|+|||||++.|.
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHh
Confidence 3556788999999999999999773
No 447
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.11 E-value=0.0028 Score=64.77 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=27.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcc
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVD 73 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~ 73 (476)
+.--..+|+|+|++++|||||+++|....|...
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 344567999999999999999999987766653
No 448
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.09 E-value=0.0033 Score=56.77 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
..+.+.|+|||+... ......+..+|.+++++.+..... ....+.+..+...+.+ +.+++||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 578899999997543 245566788999999999886532 3556677777788888 6789999996
No 449
>PRK00098 GTPase RsgA; Reviewed
Probab=97.09 E-value=0.00061 Score=67.01 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|++|+|||||+|+|+
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999996
No 450
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0034 Score=68.40 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...|+++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 35789999999999999998863
No 451
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.03 E-value=0.014 Score=62.53 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=61.2
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCC-ccccceeeEEecC
Q 011836 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 356 (476)
Q Consensus 281 ~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~~ 356 (476)
.+|+ ..+.++.++|..|.|++|..|.-..+....+|.||+.+++++.+|..|+-|+|.+.+.. ..+++.||+|...
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEEecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence 4563 34788999999999999998743223345789999999999999999999999999743 2579999998753
No 452
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.03 E-value=0.0013 Score=65.14 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=59.9
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH---
Q 011836 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT--- 180 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~---~e~~~~~~~qt~e~l~~~~~--- 180 (476)
+..|.......|..++..+.++|++|+....+.+......++++++|||..+-. .|... .....+.+.....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~ 222 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICN 222 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHh
Confidence 344555555667788999999999999999999999999999999999988631 11000 0122222222221
Q ss_pred ----cCCceEEEEEeeccC
Q 011836 181 ----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 ----~~ip~~ivviNK~D~ 195 (476)
.+.| +++++||.|+
T Consensus 223 ~~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 223 SRWFANTS-IILFLNKKDL 240 (317)
T ss_pred CccccCCC-EEEEccChHH
Confidence 2567 9999999997
No 453
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.02 E-value=0.0018 Score=58.52 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCCcChHHHH-----HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~-----~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
...+.||-+.|-.+-...+ .......+.++.|||+..-.. ......+. ......-.+ |++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~~~~-~~Qi~~ADv-IvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIPELL-REQIAFADV-IVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHCHHH-HHHHCT-SE-EEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccchhhh-hhcchhcCE-EEEecccc
Confidence 3567899999955443331 222346799999999966311 12222222 223333334 79999999
No 454
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.01 E-value=0.0024 Score=65.22 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=50.9
Q ss_pred cccEEEeeeEEEEeCC---eEEEEEeCCCC-------------cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCc
Q 011836 107 KGKTVEVGRAHFETET---TRFTILDAPGH-------------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ 170 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~---~~~~liDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~q 170 (476)
.|.|+......+...+ ..+.++|.||. .+........+..++++||+|-- |..++. ...
T Consensus 393 ~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVDAE---RSn 467 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVDAE---RSI 467 (980)
T ss_pred CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcchh---hhh
Confidence 4566655555554433 57899999993 22344555667899999999832 211100 011
Q ss_pred hHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 171 TREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 171 t~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
.-.....+.-.|.. -|+|++|.|+++
T Consensus 468 VTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 468 VTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred HHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 22233444556766 789999999954
No 455
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.01 E-value=0.0031 Score=60.94 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=59.0
Q ss_pred hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCcc
Q 011836 145 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 224 (476)
Q Consensus 145 ~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 224 (476)
...|-+++|+++..+.|. ..+..+.|..+...|+. .++++||+|+... + .... ++.......+||
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~---~-~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD---E-EAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEccccCcc---h-HHHH--HHHHHHHHhCCe---
Confidence 347899999999998752 24566677888889998 5678999999432 1 2222 445556666765
Q ss_pred CCeeEEEeecccCcccccc
Q 011836 225 KDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 225 ~~~~iipiSa~~g~~i~~~ 243 (476)
+++.+|+++++++.++
T Consensus 143 ---~v~~~s~~~~~~~~~l 158 (301)
T COG1162 143 ---PVLFVSAKNGDGLEEL 158 (301)
T ss_pred ---eEEEecCcCcccHHHH
Confidence 6999999999998875
No 456
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.99 E-value=0.021 Score=57.47 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.9
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
..++...+-|+++|++-+||||++.++...
T Consensus 11 a~RT~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 11 AERTGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred HHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence 345556789999999999999999999643
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.013 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
++++..|.++|-.|+||||-++.|.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHH
Confidence 345678899999999999999999653
No 458
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.87 E-value=0.01 Score=59.34 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.+-..+.|.-|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 455678999999999999999853
No 459
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.83 E-value=0.012 Score=48.19 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=58.2
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCe-----------eeeeeCCCCeEEEEecc
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLSG 341 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~-----------~v~~a~aG~~v~i~l~~ 341 (476)
..|.++. ++.|.++..-|.+|+|++||.|.++... ...+|++|...+. +++++.|..-+-+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 3456655 6889999999999999999999997765 3468999987643 88999977777766666
Q ss_pred CCccccceeeEEec
Q 011836 342 IEEEDILSGFVLSS 355 (476)
Q Consensus 342 ~~~~~i~~G~vl~~ 355 (476)
++. +..|+-+.-
T Consensus 83 L~~--v~aG~~~~v 94 (110)
T cd03703 83 LEK--AIAGSPLLV 94 (110)
T ss_pred Ccc--ccCCCEEEE
Confidence 644 466766543
No 460
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.79 E-value=0.0069 Score=49.27 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~ 160 (476)
+.+.++|+|+...-. ....+..+|.+++++++....
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~s 75 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPLD 75 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHHH
Confidence 678999999975433 336778899999999887643
No 461
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.78 E-value=0.0079 Score=48.27 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=55.2
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
..|.+.- ++.|.+++..|.+|+|++||.+.. +....+|+++... .+.+.+|.|++.|.+ .|++. ....|+.+
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~--G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i--~g~~~-~p~aGd~~ 77 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVA--GGTYGKIRTMVDENGKALLEAGPSTPVEI--LGLKD-VPKAGDGV 77 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEE--CCccceEEEEECCCCCCccccCCCCCEEE--eeecC-CccCCCEE
Confidence 3455544 678999999999999999999999 4556799999886 678999999999853 44432 23455555
Q ss_pred e
Q 011836 354 S 354 (476)
Q Consensus 354 ~ 354 (476)
.
T Consensus 78 ~ 78 (95)
T cd03701 78 L 78 (95)
T ss_pred E
Confidence 4
No 462
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.72 E-value=0.0011 Score=65.54 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=42.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.-+..++++|+|-||.|||++||+|...... ......|+|..+-....
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C------------------------------~vg~~pGvT~smqeV~L-- 295 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKAC------------------------------NVGNVPGVTRSMQEVKL-- 295 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccc------------------------------cCCCCccchhhhhheec--
Confidence 3477899999999999999999999643221 11123456555444433
Q ss_pred CCeEEEEEeCCCC
Q 011836 121 ETTRFTILDAPGH 133 (476)
Q Consensus 121 ~~~~~~liDtPGh 133 (476)
+..+.|+|.||.
T Consensus 296 -dk~i~llDsPgi 307 (435)
T KOG2484|consen 296 -DKKIRLLDSPGI 307 (435)
T ss_pred -cCCceeccCCce
Confidence 477999999994
No 463
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.66 E-value=0.0015 Score=66.56 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..+..++|++||-||+|||++||+|..
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVG 336 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhc
Confidence 344479999999999999999999953
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.61 E-value=0.024 Score=44.72 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=46.9
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEEE
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
+++.|..|+||||+...|..... +.|..+-. ++ .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-----------------------------------~~g~~v~~----~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-----------------------------------KRGKRVLL----ID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-----------------------------------HCCCeEEE----EC----CEEE
Confidence 57889999999999998853221 01111111 11 7899
Q ss_pred EeCCCCcChHHH-HHHhhhhcCEEEEEEECCCCc
Q 011836 128 LDAPGHKSYVPN-MISGASQADIGVLVISARKGE 160 (476)
Q Consensus 128 iDtPGh~~~~~~-~~~~~~~~D~~ilVvda~~g~ 160 (476)
+|+|+....... ....+..+|.++++++.....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 999997554432 245567899999999888654
No 465
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.54 E-value=0.0017 Score=64.01 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.9
Q ss_pred cccchhhhccccCCcceeEEEEEecCCCChHHHHHHHH
Q 011836 29 VEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+..-+.|-..=+..++.+.|+++|.||+|||+++|.|.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHh
Confidence 44445555566677889999999999999999999994
No 466
>CHL00175 minD septum-site determining protein; Validated
Probab=96.51 E-value=0.014 Score=56.84 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|+|||+.... ....++..+|.+++|+++..... ..+...+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si-------~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAI-------RDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHH-------HHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 578999999986543 44556678999999998775432 345556666677776667789999985
No 467
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.42 E-value=0.0047 Score=71.74 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.2
Q ss_pred eEEEEEecCCCChHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQ 64 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~ 64 (476)
+=..|+|.+|||||||+.+
T Consensus 112 PWYlviG~~gsGKtt~l~~ 130 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQN 130 (1169)
T ss_pred CCEEEECCCCCchhHHHHh
Confidence 4468999999999999864
No 468
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.41 E-value=0.021 Score=56.56 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=50.5
Q ss_pred eEEEEEeCCCCcChHHHHHH--------hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 123 TRFTILDAPGHKSYVPNMIS--------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~--------~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
....+|-|-|-.+=.+-+.+ .....|.+|-||||..... ........+. ....-- ++++||.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~--------~~~~~~~~~~~Qia~AD-~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE--------GLDAIAELAEDQLAFAD-VIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh--------hHHHHHHHHHHHHHhCc-EEEEecc
Confidence 45789999996554222222 2235688999999987531 1111111111 122222 4799999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeec
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 234 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa 234 (476)
|+... +.. +.+...+++++ +..+++..|.
T Consensus 156 Dlv~~----~~l----~~l~~~l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 156 DLVDA----EEL----EALEARLRKLN----PRARIIETSY 184 (323)
T ss_pred cCCCH----HHH----HHHHHHHHHhC----CCCeEEEccc
Confidence 99432 223 33444455543 4568888776
No 469
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.25 E-value=0.014 Score=52.30 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+....++++|..|||||||+.+|+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3456889999999999999999963
No 470
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.23 E-value=0.045 Score=52.38 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...+.+.-.|.|.-|||||||++.++.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHc
Confidence 444555667899999999999999963
No 471
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.17 E-value=0.097 Score=56.32 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=59.3
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCC-ccccceeeEEec
Q 011836 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 355 (476)
Q Consensus 281 ~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~ 355 (476)
.+|+ ..+.++.++|..|.|+.|..|.-..+....+|.||+.++++|.++..|+-|++.+.+.. ..+++.||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLIKEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEEEECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 4663 34788999999999999998543133345789999999999999999999999998752 147888988864
No 472
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.17 E-value=0.099 Score=59.41 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=60.7
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCC-ccccceeeEEecC
Q 011836 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 356 (476)
Q Consensus 281 ~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~~ 356 (476)
.+|+ ..+.++.++|..|.|++|..|.-..+....+|.||+.+++++++|..|+-|+|.+.+.. ..++..||+|...
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~~ 1008 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYVD 1008 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEEe
Confidence 5663 34788999999999999987753223345789999999999999999999999998743 2478889988753
No 473
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.14 E-value=0.015 Score=41.43 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=25.4
Q ss_pred HHHHhhh-hcCEEEEEEECCCCccccccCCCCchHHHHHH---HH-Hc-CCceEEEEEeecc
Q 011836 139 NMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVML---AK-TL-GVTKLLLVVNKMD 194 (476)
Q Consensus 139 ~~~~~~~-~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~---~~-~~-~ip~~ivviNK~D 194 (476)
..+.+++ .++++++++|.++.. |+. ..+.+.+ ++ .+ +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gys----ie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYS----IEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-----HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCC----HHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 3455554 689999999998753 222 2223322 33 24 566 999999998
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.88 E-value=0.025 Score=50.76 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=28.3
Q ss_pred CEEEEEEECCCCccccccCCCCchHHHHHH--HHHcCCceEEEEEeeccC
Q 011836 148 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 148 D~~ilVvda~~g~~e~~~~~~~qt~e~l~~--~~~~~ip~~ivviNK~D~ 195 (476)
|++++|+||..... ....+.... +...+.| +|+++||+|+
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 78999999988642 333444444 3334566 8899999999
No 475
>PRK13695 putative NTPase; Provisional
Probab=95.74 E-value=0.023 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+|+++|.+|+|||||+..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998753
No 476
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.73 E-value=0.048 Score=56.70 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred hccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee
Q 011836 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
...++..++..+.-++|..++|||.|+..++... +++. .........+++...
T Consensus 416 ~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~~~-------------------------~~~~~~~~~avn~v~ 468 (625)
T KOG1707|consen 416 RKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRS--MSDN-------------------------NTGTTKPRYAVNSVE 468 (625)
T ss_pred hccccccceeeeEEEEcCCcCchHHHHHHHhccc--cccc-------------------------cccCCCCceeeeeee
Confidence 3444556667788999999999999999886321 1110 000111222333322
Q ss_pred EEEEeCCeEEEEEeCCCC-cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeec
Q 011836 116 AHFETETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKM 193 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~ 193 (476)
.. ...+.+.+-|.+-. .++..+-. ..||+++++.|...... |+ ...+....... ..+| ++.|.+|+
T Consensus 469 ~~--g~~k~LiL~ei~~~~~~~l~~ke---~~cDv~~~~YDsS~p~s---f~---~~a~v~~~~~~~~~~P-c~~va~K~ 536 (625)
T KOG1707|consen 469 VK--GQQKYLILREIGEDDQDFLTSKE---AACDVACLVYDSSNPRS---FE---YLAEVYNKYFDLYKIP-CLMVATKA 536 (625)
T ss_pred ec--cccceEEEeecCccccccccCcc---ceeeeEEEecccCCchH---HH---HHHHHHHHhhhccCCc-eEEEeecc
Confidence 22 33455566666542 12222211 68999999999885431 11 12222222222 5677 88999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~ 235 (476)
|+... .++..-.-.++..++++. +-+++|.+
T Consensus 537 dlDe~------~Q~~~iqpde~~~~~~i~-----~P~~~S~~ 567 (625)
T KOG1707|consen 537 DLDEV------PQRYSIQPDEFCRQLGLP-----PPIHISSK 567 (625)
T ss_pred ccchh------hhccCCChHHHHHhcCCC-----CCeeeccC
Confidence 98322 112222225667777765 44566655
No 477
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.096 Score=55.92 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=53.1
Q ss_pred CceEEEEE--EEccCCeE-EEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccC
Q 011836 274 PFRMPIID--KFKDMGTV-VMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGI 342 (476)
Q Consensus 274 ~~~~~i~~--~~~~~G~v-~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~ 342 (476)
|+.+.|.. +|..++.+ +...|..|.|+.|..|.+..-. .-.+|.||+++|++|+.|.-||-|+|.+.+.
T Consensus 935 Pc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~ 1008 (1064)
T KOG1144|consen 935 PCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEAS 1008 (1064)
T ss_pred eeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEecC
Confidence 33444433 56667765 5569999999999999875422 3478999999999999999999999988753
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.67 E-value=0.012 Score=42.98 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...|.|+.+||||||+.++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.62 E-value=0.013 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.|+|.|.++|||||+...|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999965444
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=95.61 E-value=0.0093 Score=60.14 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+++++|.+|+|||||++.|+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 5799999999999999999964
No 481
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.61 E-value=0.035 Score=49.59 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh--hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~--~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.++.+.|+|||+... ...... +..+|.+++|+.+..... ..+.+.+..+...+.+..-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 568899999999743 222222 257899999998776432 467778888888899867789999985
No 482
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=95.58 E-value=0.19 Score=39.44 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=50.0
Q ss_pred EEEEEEEEccccc-------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 365 EFIAQLQILELLD-------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 365 ~f~a~i~~~~~~~-------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+++.+.+.|+.+- + .+++.|-..++++|+..+.|+|.++. ++ .+++.|.+
T Consensus 3 ~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~ 60 (88)
T PF09173_consen 3 ELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKK 60 (88)
T ss_dssp EEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEE
T ss_pred EEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecC
Confidence 4555556654331 2 67899999999999999999999753 12 46778899
Q ss_pred eEEeeeccCccccceEEEEe--CC--cEEEEEEE
Q 011836 437 SICTEKFADFAQLGRFTLRT--EG--KTVAVGKV 466 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~--~~--~tvg~G~V 466 (476)
|+|.+..+ |.++-+ ++ |.+|+|.|
T Consensus 61 Pvc~~~g~------rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 61 PVCAEKGE------RVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEE-STTS------EEEEEEEETTSEEEEEEEEE
T ss_pred CeEcCcCC------eeeeehhccCeEEEEEEEeC
Confidence 99998874 666643 33 89999986
No 483
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.061 Score=50.91 Aligned_cols=137 Identities=19% Similarity=0.296 Sum_probs=75.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
-..||..+|..|-|||||++.|.+..=..... .. ...++......+.+.-.+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~----------------------~H-----~~~~V~L~~~TyelqEsnv 93 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPS----------------------TH-----TLPNVKLQANTYELQESNV 93 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCC----------------------cc-----CCCCceeecchhhhhhcCe
Confidence 35899999999999999999986432110000 00 011122221111111122
Q ss_pred -eEEEEEeCCCCcC-------------h--------------HHHHHHhh--hhcCEEEEEEECCCCccccccCCCCchH
Q 011836 123 -TRFTILDAPGHKS-------------Y--------------VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 123 -~~~~liDtPGh~~-------------~--------------~~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~ 172 (476)
.+++++||.|..| | ++.++... +..+++++.|+...... -+.
T Consensus 94 rlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L--------Ksl 165 (406)
T KOG3859|consen 94 RLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL--------KSL 165 (406)
T ss_pred eEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch--------hHH
Confidence 4689999999533 2 12222222 25678899998764321 111
Q ss_pred HHHHHHHHc--CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 173 EHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 173 e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
.. ..++.+ .+. +|-+|-|.|. . +++.+...+.++..-|.+-|.
T Consensus 166 DL-vtmk~LdskVN-IIPvIAKaDt--i--sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 166 DL-VTMKKLDSKVN-IIPVIAKADT--I--SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HH-HHHHHHhhhhh-hHHHHHHhhh--h--hHHHHHHHHHHHHHHHHhcCc
Confidence 11 112222 344 6778899998 3 566677777777777766554
No 484
>PHA00729 NTP-binding motif containing protein
Probab=95.28 E-value=0.019 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
...+|+|.|.||+|||||..+|....
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999996543
No 485
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.22 E-value=0.053 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|..|+|||||+.+|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~ 22 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLI 22 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999995
No 486
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.19 E-value=0.029 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...+|.+.|.+||||||++++|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhh
Confidence 468999999999999999999964
No 487
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.02 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|.|+|+|||||||+...|....+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999999766543
No 488
>PRK08118 topology modulation protein; Reviewed
Probab=95.03 E-value=0.022 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+|.|+|.+|||||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999865444
No 489
>PRK07261 topology modulation protein; Provisional
Probab=95.03 E-value=0.022 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+|+|+|.+|||||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 490
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.99 E-value=0.066 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..||.|.|.+|||||||+++|+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 491
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.99 E-value=0.022 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHHHhC
Q 011836 48 VVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
|.++|++|||||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999964444
No 492
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.95 E-value=0.021 Score=42.80 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHHHH
Q 011836 48 VVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll 66 (476)
|++.|.+++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 493
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.93 E-value=0.065 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...+|.|+|.+|||||||+++|+.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~ 154 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLA 154 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.91 E-value=0.029 Score=51.93 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
+++...|+|+|++|||||||+.+|....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556789999999999999999997543
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.91 E-value=0.022 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
--.++++|+.|+|||||++.++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 457899999999999999987643
No 496
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.80 E-value=0.031 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 497
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.75 E-value=0.051 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
...++++|..|||||||+.+|+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHH
Confidence 3568999999999999999996
No 498
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.73 E-value=0.14 Score=52.75 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccCCCCCchHHHHHHHHHHHH
Q 011836 135 SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 213 (476)
Q Consensus 135 ~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~ 213 (476)
++.+...+.+..+|++|.+|||....+- - .-..+ .+.... .-++.++++||.|+... + ....-.
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllf---r--~~dLe--~Yvke~d~~K~~~LLvNKaDLl~~----~----qr~aWa 227 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLF---R--SPDLE--DYVKEVDPSKANVLLVNKADLLPP----E----QRVAWA 227 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCcccc---C--ChhHH--HHHhccccccceEEEEehhhcCCH----H----HHHHHH
Confidence 4566667778899999999999998762 1 11222 233332 22457899999999432 1 222333
Q ss_pred HHHHhcCCCccCCeeEEEeeccc
Q 011836 214 PFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 214 ~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
.++.. .+++++..||+.
T Consensus 228 ~YF~~------~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 228 EYFRQ------NNIPVVFFSALA 244 (562)
T ss_pred HHHHh------cCceEEEEeccc
Confidence 34544 357899999987
No 499
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.099 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+...+|.+.|+||+|||||+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 456899999999999999998885
No 500
>PRK08233 hypothetical protein; Provisional
Probab=94.61 E-value=0.033 Score=50.12 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...|+|.|.+|||||||..+|....+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47889999999999999999965443
Done!