Query 011836
Match_columns 476
No_of_seqs 289 out of 3324
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 2.2E-82 7.6E-87 653.8 53.1 427 40-471 12-439 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 9.6E-79 3.3E-83 631.5 29.8 425 41-470 39-466 (467)
3 1f60_A Elongation factor EEF1A 100.0 1.9E-74 6.5E-79 597.8 44.7 423 42-472 4-442 (458)
4 1jny_A EF-1-alpha, elongation 100.0 7.7E-74 2.6E-78 590.5 44.7 426 42-472 3-430 (435)
5 3p26_A Elongation factor 1 alp 100.0 1.1E-73 3.7E-78 597.0 42.6 424 42-471 30-477 (483)
6 3izq_1 HBS1P, elongation facto 100.0 3.9E-74 1.3E-78 612.5 36.9 424 41-470 163-610 (611)
7 3mca_A HBS1, elongation factor 100.0 1.5E-73 5.3E-78 606.4 32.6 418 38-470 170-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 3.7E-68 1.3E-72 548.2 43.3 409 41-468 20-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 4.5E-61 1.5E-65 489.9 38.9 378 43-472 1-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 1.7E-60 6E-65 487.1 37.6 384 41-470 7-404 (405)
11 3avx_A Elongation factor TS, e 100.0 1.3E-56 4.3E-61 491.3 36.5 381 40-473 291-680 (1289)
12 1wb1_A Translation elongation 100.0 7.2E-58 2.4E-62 476.0 14.5 371 39-470 13-394 (482)
13 2elf_A Protein translation elo 100.0 1.9E-54 6.4E-59 435.3 32.8 335 47-467 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 1E-52 3.6E-57 430.3 39.7 344 41-467 6-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 7.5E-53 2.6E-57 430.9 35.8 343 42-467 5-407 (408)
16 3sjy_A Translation initiation 100.0 1.4E-49 4.9E-54 406.0 35.3 356 41-467 4-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 9.5E-42 3.2E-46 314.1 18.2 199 271-472 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 2.7E-39 9.4E-44 340.2 25.5 279 42-359 28-402 (548)
19 2ywe_A GTP-binding protein LEP 100.0 2.7E-37 9.2E-42 326.0 27.7 268 43-359 4-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 3.7E-36 1.3E-40 317.9 28.2 267 44-359 3-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 1.8E-36 6.1E-41 329.2 22.2 274 43-359 11-406 (709)
22 3j25_A Tetracycline resistance 100.0 2.3E-38 8E-43 339.6 0.8 274 44-358 1-331 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 4E-34 1.4E-38 299.4 24.4 280 43-357 11-382 (528)
24 2rdo_7 EF-G, elongation factor 100.0 6.1E-33 2.1E-37 300.2 29.3 274 42-358 7-402 (704)
25 2h5e_A Peptide chain release f 100.0 4.5E-33 1.5E-37 291.7 24.5 275 43-357 11-383 (529)
26 1dar_A EF-G, elongation factor 100.0 6.5E-32 2.2E-36 291.9 30.2 276 41-359 8-395 (691)
27 2xex_A Elongation factor G; GT 100.0 2.9E-31 1E-35 286.9 27.3 275 41-358 6-394 (693)
28 3izy_P Translation initiation 100.0 3.7E-34 1.3E-38 298.4 1.8 252 44-359 3-261 (537)
29 1zo1_I IF2, translation initia 100.0 1.6E-32 5.4E-37 283.8 12.4 248 44-358 3-259 (501)
30 2dy1_A Elongation factor G; tr 100.0 6.9E-31 2.4E-35 283.0 23.4 271 43-359 7-368 (665)
31 1g7s_A Translation initiation 100.0 5.1E-31 1.7E-35 279.0 17.8 263 43-359 3-330 (594)
32 1n0u_A EF-2, elongation factor 100.0 7E-28 2.4E-32 265.5 26.1 289 42-357 16-473 (842)
33 2hjg_A GTP-binding protein ENG 99.8 1.5E-19 5.3E-24 185.8 12.8 158 43-245 173-341 (436)
34 2lkc_A Translation initiation 99.8 5.1E-20 1.8E-24 164.9 6.0 155 43-245 6-163 (178)
35 4dcu_A GTP-binding protein ENG 99.8 3.7E-19 1.3E-23 184.0 12.7 160 41-245 191-361 (456)
36 3iev_A GTP-binding protein ERA 99.8 1.9E-18 6.4E-23 169.5 15.5 155 42-244 7-173 (308)
37 4dhe_A Probable GTP-binding pr 99.8 1.5E-18 5.2E-23 161.5 13.1 158 43-243 27-201 (223)
38 1wf3_A GTP-binding protein; GT 99.8 2.7E-18 9.1E-23 167.6 15.1 149 43-243 5-163 (301)
39 2dyk_A GTP-binding protein; GT 99.8 3.6E-18 1.2E-22 150.1 12.6 144 46-243 2-152 (161)
40 2hxs_A RAB-26, RAS-related pro 99.7 9.5E-18 3.3E-22 150.0 13.7 152 43-244 4-164 (178)
41 2fg5_A RAB-22B, RAS-related pr 99.7 6.6E-18 2.3E-22 153.7 12.3 154 42-243 20-176 (192)
42 2p5s_A RAS and EF-hand domain 99.7 2.6E-18 8.9E-23 157.3 9.4 163 39-243 22-187 (199)
43 1r2q_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 148.1 13.1 154 42-243 3-159 (170)
44 4bas_A ADP-ribosylation factor 99.7 1.1E-17 3.9E-22 152.5 13.4 158 39-245 11-181 (199)
45 2efe_B Small GTP-binding prote 99.7 1.2E-17 4E-22 149.9 12.9 154 42-243 9-165 (181)
46 1zj6_A ADP-ribosylation factor 99.7 1.2E-17 3.9E-22 151.3 12.8 151 43-243 14-168 (187)
47 3tw8_B RAS-related protein RAB 99.7 5.7E-18 1.9E-22 151.7 10.6 155 41-245 5-163 (181)
48 1z0f_A RAB14, member RAS oncog 99.7 3.6E-18 1.2E-22 152.7 9.2 154 42-243 12-168 (179)
49 3tkl_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 151.7 12.9 154 42-245 13-171 (196)
50 3llu_A RAS-related GTP-binding 99.7 2.4E-17 8.3E-22 150.5 14.6 168 37-243 12-187 (196)
51 1upt_A ARL1, ADP-ribosylation 99.7 1.9E-17 6.6E-22 146.9 13.5 152 43-244 5-160 (171)
52 3cph_A RAS-related protein SEC 99.7 1.2E-17 4.2E-22 154.1 12.6 153 42-245 17-174 (213)
53 2oil_A CATX-8, RAS-related pro 99.7 5.3E-18 1.8E-22 154.2 9.9 158 40-245 20-180 (193)
54 1ek0_A Protein (GTP-binding pr 99.7 1.3E-17 4.5E-22 147.6 12.2 155 44-243 2-159 (170)
55 2bme_A RAB4A, RAS-related prot 99.7 9.7E-18 3.3E-22 151.2 11.5 154 42-245 7-165 (186)
56 2y8e_A RAB-protein 6, GH09086P 99.7 1.4E-17 4.9E-22 148.8 12.5 152 42-243 11-167 (179)
57 2il1_A RAB12; G-protein, GDP, 99.7 1.4E-17 4.8E-22 151.5 12.5 157 39-244 20-181 (192)
58 3iby_A Ferrous iron transport 99.7 2.6E-18 8.9E-23 163.9 8.0 144 46-243 2-157 (256)
59 1zd9_A ADP-ribosylation factor 99.7 2.2E-17 7.4E-22 149.7 13.6 154 41-243 18-175 (188)
60 1wms_A RAB-9, RAB9, RAS-relate 99.7 3E-17 1E-21 146.6 14.2 153 42-244 4-165 (177)
61 3i8s_A Ferrous iron transport 99.7 4.3E-18 1.5E-22 164.1 9.2 147 44-244 2-160 (274)
62 1ega_A Protein (GTP-binding pr 99.7 4.7E-18 1.6E-22 166.1 9.4 152 43-244 6-166 (301)
63 2gf9_A RAS-related protein RAB 99.7 5.9E-18 2E-22 153.4 9.4 156 42-245 19-177 (189)
64 1r8s_A ADP-ribosylation factor 99.7 5E-17 1.7E-21 143.3 15.0 148 46-243 1-152 (164)
65 2h57_A ADP-ribosylation factor 99.7 1.1E-17 3.8E-22 151.7 11.0 157 40-244 16-178 (190)
66 3t1o_A Gliding protein MGLA; G 99.7 1.2E-17 4.1E-22 151.8 11.0 161 41-245 10-184 (198)
67 2fu5_C RAS-related protein RAB 99.7 8E-18 2.7E-22 151.4 9.8 152 43-245 6-163 (183)
68 2hup_A RAS-related protein RAB 99.7 2.3E-17 7.9E-22 151.4 13.0 157 39-245 23-185 (201)
69 1g16_A RAS-related protein SEC 99.7 1.8E-17 6E-22 146.9 11.8 150 45-245 3-157 (170)
70 2h17_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 150.2 11.1 156 38-243 14-173 (181)
71 2g6b_A RAS-related protein RAB 99.7 2.1E-17 7.2E-22 148.0 12.3 154 41-244 6-165 (180)
72 4dsu_A GTPase KRAS, isoform 2B 99.7 1.4E-17 4.7E-22 150.4 11.1 151 43-245 2-158 (189)
73 1kao_A RAP2A; GTP-binding prot 99.7 5.1E-18 1.7E-22 149.7 8.0 151 44-244 2-157 (167)
74 3clv_A RAB5 protein, putative; 99.7 2.9E-17 9.8E-22 149.9 13.2 103 123-245 93-196 (208)
75 1x3s_A RAS-related protein RAB 99.7 2.3E-17 7.9E-22 149.8 12.3 156 41-245 11-170 (195)
76 3a1s_A Iron(II) transport prot 99.7 1.3E-17 4.3E-22 159.4 10.8 149 43-245 3-159 (258)
77 1mky_A Probable GTP-binding pr 99.7 5.9E-17 2E-21 166.7 16.5 147 46-245 2-158 (439)
78 1z0j_A RAB-22, RAS-related pro 99.7 2.5E-17 8.7E-22 145.9 11.9 153 43-243 4-159 (170)
79 3k53_A Ferrous iron transport 99.7 9.7E-18 3.3E-22 161.4 9.8 147 44-244 2-157 (271)
80 1u8z_A RAS-related protein RAL 99.7 3.7E-17 1.3E-21 144.2 12.8 153 43-244 2-158 (168)
81 2ce2_X GTPase HRAS; signaling 99.7 8.4E-17 2.9E-21 141.5 14.9 151 44-244 2-156 (166)
82 2wji_A Ferrous iron transport 99.7 2.6E-17 8.8E-22 146.0 11.7 146 44-243 2-155 (165)
83 3dz8_A RAS-related protein RAB 99.7 5.5E-18 1.9E-22 154.0 7.3 158 40-245 18-178 (191)
84 1svi_A GTP-binding protein YSX 99.7 3.3E-17 1.1E-21 149.0 12.3 152 43-243 21-185 (195)
85 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.1E-17 7.2E-22 148.8 10.9 159 43-243 3-170 (186)
86 3pqc_A Probable GTP-binding pr 99.7 2.8E-17 9.7E-22 149.1 11.7 152 43-244 21-185 (195)
87 3bc1_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 148.4 12.0 153 42-245 8-177 (195)
88 2fh5_B SR-beta, signal recogni 99.7 5.8E-17 2E-21 149.9 13.8 157 43-243 5-206 (214)
89 1ksh_A ARF-like protein 2; sma 99.7 2.8E-17 9.5E-22 148.4 11.3 152 43-244 16-171 (186)
90 1c1y_A RAS-related protein RAP 99.7 2.6E-17 8.8E-22 145.4 10.9 152 44-243 2-157 (167)
91 1zbd_A Rabphilin-3A; G protein 99.7 4.1E-17 1.4E-21 149.5 12.6 154 43-245 6-163 (203)
92 1m2o_B GTP-binding protein SAR 99.7 4E-17 1.4E-21 148.4 12.3 152 43-243 21-182 (190)
93 2b6h_A ADP-ribosylation factor 99.7 9.4E-17 3.2E-21 146.2 14.7 152 42-243 26-181 (192)
94 3qq5_A Small GTP-binding prote 99.7 8.1E-18 2.8E-22 171.0 8.1 148 42-243 31-186 (423)
95 2ew1_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 150.6 11.2 154 41-245 22-181 (201)
96 2a5j_A RAS-related protein RAB 99.7 2.7E-17 9.1E-22 149.4 10.4 157 40-245 16-176 (191)
97 1fzq_A ADP-ribosylation factor 99.7 1.8E-16 6E-21 142.9 15.7 151 43-243 14-168 (181)
98 2o52_A RAS-related protein RAB 99.7 9.7E-18 3.3E-22 153.7 7.4 154 42-245 22-180 (200)
99 1vg8_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 149.8 11.6 154 42-245 5-167 (207)
100 2bov_A RAla, RAS-related prote 99.7 8.6E-17 2.9E-21 147.4 13.6 154 41-245 10-169 (206)
101 2fn4_A P23, RAS-related protei 99.7 1.9E-17 6.6E-22 148.2 8.8 153 41-245 5-164 (181)
102 2xtp_A GTPase IMAP family memb 99.7 1.7E-17 5.9E-22 158.6 8.9 164 42-245 19-200 (260)
103 1z08_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 148.0 7.2 154 43-244 4-160 (170)
104 2erx_A GTP-binding protein DI- 99.7 1.6E-16 5.6E-21 140.7 14.3 149 45-243 3-157 (172)
105 3kkq_A RAS-related protein M-R 99.7 4.2E-17 1.4E-21 146.7 10.6 152 41-244 14-173 (183)
106 2a9k_A RAS-related protein RAL 99.7 8.6E-17 3E-21 144.7 12.6 154 41-245 14-173 (187)
107 2nzj_A GTP-binding protein REM 99.7 4.1E-17 1.4E-21 145.3 10.3 153 43-245 2-161 (175)
108 1z2a_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 144.6 9.9 152 43-244 3-158 (168)
109 1f6b_A SAR1; gtpases, N-termin 99.7 8.1E-17 2.8E-21 147.4 12.4 152 43-243 23-189 (198)
110 1ky3_A GTP-binding protein YPT 99.7 2.7E-17 9.3E-22 147.3 9.0 154 42-245 5-170 (182)
111 4gzl_A RAS-related C3 botulinu 99.7 5.6E-17 1.9E-21 149.1 11.1 158 42-243 27-195 (204)
112 1moz_A ARL1, ADP-ribosylation 99.7 2.5E-17 8.7E-22 148.0 8.4 152 43-244 16-171 (183)
113 2gf0_A GTP-binding protein DI- 99.7 3.7E-16 1.3E-20 142.4 16.2 150 44-243 7-161 (199)
114 3con_A GTPase NRAS; structural 99.7 1.5E-16 5.3E-21 144.0 13.4 154 40-245 16-175 (190)
115 2hjg_A GTP-binding protein ENG 99.7 1.9E-17 6.6E-22 170.2 8.3 145 45-243 3-155 (436)
116 2x77_A ADP-ribosylation factor 99.7 3.7E-17 1.3E-21 148.1 9.0 152 43-244 20-175 (189)
117 3t5g_A GTP-binding protein RHE 99.7 2.2E-17 7.7E-22 148.2 7.5 152 43-245 4-161 (181)
118 1z06_A RAS-related protein RAB 99.7 6.5E-17 2.2E-21 146.5 10.4 152 41-243 16-178 (189)
119 2bcg_Y Protein YP2, GTP-bindin 99.7 7.4E-17 2.5E-21 148.3 10.8 152 43-245 6-163 (206)
120 3oes_A GTPase rhebl1; small GT 99.7 3.6E-17 1.2E-21 149.9 8.3 156 41-245 20-179 (201)
121 3r7w_A Gtpase1, GTP-binding pr 99.7 2.3E-16 7.8E-21 154.6 14.5 161 45-243 3-171 (307)
122 2f7s_A C25KG, RAS-related prot 99.7 1E-16 3.6E-21 148.5 10.9 153 42-245 22-191 (217)
123 3o47_A ADP-ribosylation factor 99.7 1.2E-16 4.1E-21 158.0 12.0 153 42-244 162-318 (329)
124 2wjg_A FEOB, ferrous iron tran 99.7 8E-17 2.7E-21 145.5 9.9 148 43-244 5-160 (188)
125 3q72_A GTP-binding protein RAD 99.7 9.4E-17 3.2E-21 141.8 9.9 149 45-244 2-155 (166)
126 2atx_A Small GTP binding prote 99.7 8.4E-17 2.9E-21 146.3 9.5 158 42-243 15-183 (194)
127 3gj0_A GTP-binding nuclear pro 99.7 4.8E-17 1.7E-21 151.3 8.1 156 40-245 10-167 (221)
128 3cpj_B GTP-binding protein YPT 99.7 7.7E-17 2.6E-21 150.3 9.4 151 43-244 11-167 (223)
129 3q85_A GTP-binding protein REM 99.7 9.7E-17 3.3E-21 142.2 9.6 150 45-244 2-158 (169)
130 2gco_A H9, RHO-related GTP-bin 99.7 7.7E-17 2.6E-21 147.8 9.2 158 43-244 23-191 (201)
131 3reg_A RHO-like small GTPase; 99.7 1.5E-16 5E-21 144.8 10.8 158 41-244 19-179 (194)
132 2fv8_A H6, RHO-related GTP-bin 99.7 2.1E-16 7.1E-21 145.5 11.9 167 34-244 14-191 (207)
133 4djt_A GTP-binding nuclear pro 99.7 6.6E-17 2.3E-21 149.9 8.3 154 42-245 8-167 (218)
134 1mky_A Probable GTP-binding pr 99.7 2.7E-16 9.4E-21 161.7 13.6 158 43-245 178-347 (439)
135 2gj8_A MNME, tRNA modification 99.7 3.8E-16 1.3E-20 139.6 11.9 143 44-243 3-156 (172)
136 2j1l_A RHO-related GTP-binding 99.7 3.1E-16 1.1E-20 145.3 11.6 159 42-244 31-200 (214)
137 2qu8_A Putative nucleolar GTP- 99.7 7.7E-16 2.6E-20 144.0 14.4 160 43-245 27-197 (228)
138 3gee_A MNME, tRNA modification 99.7 1.8E-16 6.3E-21 163.6 11.0 151 43-245 231-390 (476)
139 2yc2_C IFT27, small RAB-relate 99.7 8.1E-17 2.8E-21 147.7 7.4 156 43-245 18-184 (208)
140 4dkx_A RAS-related protein RAB 99.7 4E-16 1.4E-20 144.8 11.9 152 42-243 10-166 (216)
141 3bwd_D RAC-like GTP-binding pr 99.7 1.5E-16 5.3E-21 142.6 8.5 156 43-243 6-171 (182)
142 3b1v_A Ferrous iron uptake tra 99.7 9.3E-17 3.2E-21 154.3 7.4 145 45-244 3-155 (272)
143 4dcu_A GTP-binding protein ENG 99.7 1.1E-16 3.6E-21 165.6 8.3 150 40-243 18-175 (456)
144 3lxw_A GTPase IMAP family memb 99.6 5.1E-16 1.7E-20 147.3 11.9 157 43-244 19-199 (247)
145 2j0v_A RAC-like GTP-binding pr 99.6 3.3E-16 1.1E-20 144.6 10.4 157 43-244 7-171 (212)
146 3q3j_B RHO-related GTP-binding 99.6 5.8E-16 2E-20 143.5 11.0 168 36-244 18-194 (214)
147 2q3h_A RAS homolog gene family 99.6 6E-16 2.1E-20 141.4 10.5 161 41-245 16-187 (201)
148 3l0i_B RAS-related protein RAB 99.6 1.2E-17 4E-22 152.9 -1.7 152 42-243 30-186 (199)
149 3cbq_A GTP-binding protein REM 99.6 1.9E-15 6.5E-20 137.9 12.9 153 41-244 19-179 (195)
150 2atv_A RERG, RAS-like estrogen 99.6 1E-15 3.6E-20 139.4 10.9 152 43-245 26-183 (196)
151 1xzp_A Probable tRNA modificat 99.6 5.6E-16 1.9E-20 160.1 10.0 147 44-245 242-397 (482)
152 3lvq_E ARF-GAP with SH3 domain 99.6 1.6E-15 5.4E-20 158.6 13.2 154 41-244 318-475 (497)
153 3ihw_A Centg3; RAS, centaurin, 99.6 2.5E-15 8.6E-20 135.8 12.6 152 40-245 15-172 (184)
154 3c5c_A RAS-like protein 12; GD 99.6 2E-15 6.9E-20 136.6 10.8 154 41-244 17-177 (187)
155 1m7b_A RND3/RHOE small GTP-bin 99.6 1.8E-15 6.1E-20 136.4 10.1 158 42-244 4-174 (184)
156 3t5d_A Septin-7; GTP-binding p 99.6 5.9E-15 2E-19 142.1 14.2 158 44-243 7-194 (274)
157 2iwr_A Centaurin gamma 1; ANK 99.6 5.2E-15 1.8E-19 132.3 12.1 150 42-245 4-161 (178)
158 3th5_A RAS-related C3 botulinu 99.4 7.9E-17 2.7E-21 147.9 0.0 162 42-245 27-197 (204)
159 1gwn_A RHO-related GTP-binding 99.6 2.2E-15 7.5E-20 138.7 9.6 159 41-244 24-195 (205)
160 3lxx_A GTPase IMAP family memb 99.6 7.6E-15 2.6E-19 138.3 12.6 152 41-236 25-192 (239)
161 1nrj_B SR-beta, signal recogni 99.6 2.7E-15 9.2E-20 139.0 9.1 151 42-240 9-171 (218)
162 2cxx_A Probable GTP-binding pr 99.6 3.4E-15 1.2E-19 134.7 9.5 155 46-245 2-176 (190)
163 3geh_A MNME, tRNA modification 99.6 1.6E-15 5.4E-20 156.1 7.2 147 43-245 222-376 (462)
164 2qtf_A Protein HFLX, GTP-bindi 99.6 1.1E-14 3.9E-19 145.4 12.6 155 45-245 179-346 (364)
165 2wkq_A NPH1-1, RAS-related C3 99.6 1.1E-14 3.6E-19 143.8 11.6 157 43-243 153-320 (332)
166 1lnz_A SPO0B-associated GTP-bi 99.5 2.8E-15 9.7E-20 148.3 5.8 152 45-245 158-322 (342)
167 3def_A T7I23.11 protein; chlor 99.5 3.1E-14 1.1E-18 136.1 12.5 120 41-196 32-164 (262)
168 2zej_A Dardarin, leucine-rich 99.5 1.5E-14 5.2E-19 130.4 9.8 158 45-243 2-168 (184)
169 1h65_A Chloroplast outer envel 99.5 6.5E-14 2.2E-18 134.5 14.8 119 42-197 36-168 (270)
170 2g3y_A GTP-binding protein GEM 99.5 3.4E-14 1.1E-18 131.4 10.2 154 42-245 34-195 (211)
171 3dpu_A RAB family protein; roc 99.5 1.8E-14 6.3E-19 151.8 9.4 154 41-245 37-200 (535)
172 2ged_A SR-beta, signal recogni 99.5 2.2E-14 7.4E-19 130.1 7.6 116 42-199 45-172 (193)
173 2cjw_A GTP-binding protein GEM 99.5 9E-14 3.1E-18 126.4 11.4 154 43-245 4-164 (192)
174 2e87_A Hypothetical protein PH 99.5 1.1E-13 3.7E-18 138.4 12.5 153 43-245 165-328 (357)
175 2aka_B Dynamin-1; fusion prote 99.5 1.6E-13 5.3E-18 133.6 12.1 107 122-245 124-245 (299)
176 1jwy_B Dynamin A GTPase domain 99.5 9.1E-14 3.1E-18 136.4 9.0 70 121-197 129-212 (315)
177 1pui_A ENGB, probable GTP-bind 99.5 6.8E-13 2.3E-17 121.9 14.1 155 41-243 22-189 (210)
178 3r7w_B Gtpase2, GTP-binding pr 99.4 3.3E-13 1.1E-17 131.4 11.4 180 47-264 1-186 (331)
179 2f9l_A RAB11B, member RAS onco 99.4 2.8E-13 9.7E-18 123.6 10.3 151 45-245 5-160 (199)
180 1wxq_A GTP-binding protein; st 99.4 3.3E-13 1.1E-17 136.3 11.0 37 123-159 71-114 (397)
181 2qag_A Septin-2, protein NEDD5 99.4 3.4E-13 1.2E-17 134.8 9.4 159 44-243 36-223 (361)
182 3p32_A Probable GTPase RV1496/ 99.4 7.8E-13 2.7E-17 132.0 11.4 107 120-245 169-276 (355)
183 2j69_A Bacterial dynamin-like 99.4 1.1E-12 3.7E-17 141.9 12.1 113 123-244 174-316 (695)
184 2p67_A LAO/AO transport system 99.4 1.3E-12 4.3E-17 129.8 11.0 107 120-245 146-253 (341)
185 1oix_A RAS-related protein RAB 99.4 1.8E-12 6E-17 117.6 10.0 151 43-243 27-182 (191)
186 2qpt_A EH domain-containing pr 99.3 5.4E-12 1.9E-16 132.7 11.3 79 123-213 154-244 (550)
187 3c5h_A Glucocorticoid receptor 99.3 6.6E-13 2.3E-17 126.4 3.6 81 146-244 162-246 (255)
188 2www_A Methylmalonic aciduria 99.3 1.3E-11 4.5E-16 122.7 12.7 107 120-245 164-271 (349)
189 1udx_A The GTP-binding protein 99.3 8.8E-12 3E-16 126.2 10.9 151 46-245 158-317 (416)
190 3t34_A Dynamin-related protein 99.2 1.3E-11 4.5E-16 123.4 9.5 104 122-243 135-251 (360)
191 2wsm_A Hydrogenase expression/ 99.2 2.5E-12 8.6E-17 119.2 3.6 164 43-244 28-205 (221)
192 2x2e_A Dynamin-1; nitration, h 99.2 1.8E-11 6.2E-16 122.1 9.4 107 122-245 129-250 (353)
193 3zvr_A Dynamin-1; hydrolase, D 99.2 4.3E-11 1.5E-15 128.8 12.3 108 121-245 148-270 (772)
194 4a9a_A Ribosome-interacting GT 99.2 4.3E-11 1.5E-15 119.3 9.2 113 44-196 71-195 (376)
195 1xe1_A Hypothetical protein PF 99.1 4.5E-10 1.5E-14 90.6 11.2 80 272-355 32-113 (116)
196 1yrb_A ATP(GTP)binding protein 99.1 2.6E-10 8.8E-15 108.4 11.1 106 122-244 108-248 (262)
197 1jal_A YCHF protein; nucleotid 99.1 3.2E-10 1.1E-14 112.4 11.8 82 46-158 3-108 (363)
198 1zcb_A G alpha I/13; GTP-bindi 99.1 7.5E-10 2.6E-14 110.2 12.2 136 109-245 187-345 (362)
199 2dby_A GTP-binding protein; GD 99.1 5.5E-10 1.9E-14 111.3 11.2 37 122-158 68-111 (368)
200 1cip_A Protein (guanine nucleo 99.1 1.1E-09 3.6E-14 108.7 13.2 137 108-245 178-336 (353)
201 2qnr_A Septin-2, protein NEDD5 99.0 1.7E-09 5.6E-14 105.3 12.2 160 45-245 18-206 (301)
202 2qm8_A GTPase/ATPase; G protei 99.0 4.8E-09 1.6E-13 103.6 14.4 108 120-245 145-253 (337)
203 3ohm_A Guanine nucleotide-bind 99.0 6.1E-09 2.1E-13 101.8 14.1 134 107-244 151-309 (327)
204 2qag_C Septin-7; cell cycle, c 98.9 2.7E-09 9.2E-14 108.0 11.3 156 45-242 31-216 (418)
205 2j37_W Signal recognition part 98.9 1E-08 3.6E-13 105.9 13.7 66 121-196 182-253 (504)
206 2hf9_A Probable hydrogenase ni 98.9 8.5E-09 2.9E-13 95.5 10.1 98 122-244 118-215 (226)
207 4fid_A G protein alpha subunit 98.8 2E-08 6.7E-13 98.6 12.6 137 107-244 145-319 (340)
208 1azs_C GS-alpha; complex (lyas 98.8 9E-08 3.1E-12 96.1 15.3 83 109-195 203-296 (402)
209 2qag_B Septin-6, protein NEDD5 98.7 5.6E-08 1.9E-12 98.1 10.4 151 37-233 34-216 (427)
210 3ec1_A YQEH GTPase; atnos1, at 98.6 1.6E-09 5.5E-14 108.4 -3.9 115 46-196 163-287 (369)
211 3h2y_A GTPase family protein; 98.6 2.8E-09 9.5E-14 106.6 -2.2 149 46-242 161-319 (368)
212 2ohf_A Protein OLA1, GTP-bindi 98.6 5.1E-08 1.7E-12 97.5 6.2 85 43-158 20-128 (396)
213 2v3c_C SRP54, signal recogniti 98.5 6.5E-07 2.2E-11 91.0 12.6 65 121-195 179-250 (432)
214 3sop_A Neuronal-specific septi 98.5 4.8E-07 1.6E-11 86.3 10.7 62 147-221 112-174 (270)
215 1tq4_A IIGP1, interferon-induc 98.5 1.9E-06 6.6E-11 86.8 15.7 156 44-244 68-244 (413)
216 3dm5_A SRP54, signal recogniti 98.5 1.2E-06 4E-11 88.9 14.0 95 121-243 181-281 (443)
217 3kl4_A SRP54, signal recogniti 98.4 1.3E-06 4.5E-11 88.4 11.0 94 121-243 178-280 (433)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.1E-06 3.7E-11 88.0 8.2 85 44-158 19-127 (392)
219 1j8m_F SRP54, signal recogniti 98.3 1E-05 3.5E-10 78.1 13.9 95 121-243 179-281 (297)
220 1u0l_A Probable GTPase ENGC; p 98.2 1.1E-06 3.8E-11 85.2 6.1 102 123-244 63-164 (301)
221 2xtz_A Guanine nucleotide-bind 98.1 3.4E-06 1.2E-10 83.4 7.4 71 121-195 181-262 (354)
222 1puj_A YLQF, conserved hypothe 98.1 7.4E-06 2.5E-10 78.5 9.2 95 127-245 3-98 (282)
223 3e70_C DPA, signal recognition 98.0 3.8E-05 1.3E-09 75.1 13.0 93 122-243 211-310 (328)
224 1f5n_A Interferon-induced guan 98.0 2.5E-06 8.5E-11 89.7 4.4 27 41-67 34-60 (592)
225 2xxa_A Signal recognition part 98.0 1.1E-05 3.8E-10 81.9 9.0 64 121-195 182-252 (433)
226 1puj_A YLQF, conserved hypothe 97.9 9.4E-06 3.2E-10 77.8 5.1 24 43-66 118-141 (282)
227 2yv5_A YJEQ protein; hydrolase 97.8 1.2E-05 4.1E-10 77.9 4.9 96 133-245 66-161 (302)
228 3l82_B F-box only protein 4; T 97.8 4.2E-05 1.4E-09 69.0 7.9 94 132-243 111-213 (227)
229 1d1n_A Initiation factor 2; be 97.8 2.3E-05 7.8E-10 61.4 4.8 78 277-356 9-91 (99)
230 3ec1_A YQEH GTPase; atnos1, at 97.7 4.8E-05 1.6E-09 75.8 7.5 103 125-244 51-153 (369)
231 2crv_A IF-2MT, translation ini 97.7 0.0001 3.5E-09 59.7 7.6 80 276-357 12-100 (120)
232 3cnl_A YLQF, putative uncharac 97.7 2.6E-05 9E-10 73.8 4.7 86 131-243 5-91 (262)
233 2yhs_A FTSY, cell division pro 97.6 0.00012 4.2E-09 74.8 8.9 64 121-195 374-450 (503)
234 3h2y_A GTPase family protein; 97.6 4.5E-05 1.5E-09 75.9 5.5 96 133-244 56-151 (368)
235 1t9h_A YLOQ, probable GTPase E 97.5 0.00011 3.9E-09 70.9 7.0 87 143-245 83-169 (307)
236 1rj9_A FTSY, signal recognitio 97.5 0.00019 6.5E-09 69.4 8.6 63 122-195 184-259 (304)
237 1vma_A Cell division protein F 97.5 0.00041 1.4E-08 67.1 9.9 25 43-67 102-126 (306)
238 3cnl_A YLQF, putative uncharac 97.4 5E-05 1.7E-09 71.9 2.6 21 46-66 100-120 (262)
239 3l2o_B F-box only protein 4; s 97.4 0.00029 9.9E-09 66.7 7.6 96 130-243 194-298 (312)
240 3szr_A Interferon-induced GTP- 97.4 0.0004 1.4E-08 73.7 9.4 23 45-67 45-67 (608)
241 1zu4_A FTSY; GTPase, signal re 97.4 0.00037 1.3E-08 67.9 8.2 26 42-67 102-127 (320)
242 2px0_A Flagellar biosynthesis 97.4 0.00027 9.2E-09 68.1 7.1 65 121-195 181-251 (296)
243 2ffh_A Protein (FFH); SRP54, s 97.3 0.00056 1.9E-08 69.0 8.9 64 121-195 179-249 (425)
244 1zo1_I IF2, translation initia 97.3 0.00084 2.9E-08 69.2 9.7 96 260-357 394-494 (501)
245 4dzz_A Plasmid partitioning pr 97.1 0.0021 7E-08 57.7 10.0 63 122-195 75-142 (206)
246 3q5d_A Atlastin-1; G protein, 97.0 0.0036 1.2E-07 63.5 11.4 28 41-68 63-90 (447)
247 3izy_P Translation initiation 96.8 0.0024 8.2E-08 66.4 8.3 179 127-354 345-534 (537)
248 1ls1_A Signal recognition part 96.8 0.0039 1.3E-07 59.9 9.3 64 121-195 179-249 (295)
249 3b9q_A Chloroplast SRP recepto 96.7 0.0041 1.4E-07 59.9 8.7 25 43-67 98-122 (302)
250 2rcn_A Probable GTPase ENGC; Y 96.7 0.0032 1.1E-07 62.0 7.8 83 144-244 128-210 (358)
251 1g7s_A Translation initiation 96.7 0.0081 2.8E-07 63.3 11.4 84 273-356 462-549 (594)
252 2og2_A Putative signal recogni 96.6 0.004 1.4E-07 61.4 7.8 25 43-67 155-179 (359)
253 3cwq_A Para family chromosome 96.6 0.013 4.4E-07 53.0 10.7 65 121-195 66-132 (209)
254 1t9h_A YLOQ, probable GTPase E 95.6 0.0039 1.3E-07 60.1 2.2 21 46-66 174-194 (307)
255 3end_A Light-independent proto 95.5 0.031 1.1E-06 53.6 8.1 67 121-195 155-225 (307)
256 1knq_A Gluconate kinase; ALFA/ 95.3 0.013 4.5E-07 51.0 4.3 29 43-71 6-34 (175)
257 1ye8_A Protein THEP1, hypothet 95.1 0.012 4.2E-07 51.8 3.3 23 47-69 2-24 (178)
258 4ido_A Atlastin-1; GTPase, GTP 95.0 0.16 5.6E-06 51.2 11.8 27 41-67 63-89 (457)
259 1kgd_A CASK, peripheral plasma 95.0 0.013 4.4E-07 51.6 3.2 23 46-68 6-28 (180)
260 1lvg_A Guanylate kinase, GMP k 94.9 0.01 3.5E-07 53.2 2.5 24 45-68 4-27 (198)
261 3c8u_A Fructokinase; YP_612366 94.7 0.019 6.5E-07 51.7 3.7 27 42-68 19-45 (208)
262 3asz_A Uridine kinase; cytidin 94.6 0.022 7.4E-07 51.3 3.7 25 44-68 5-29 (211)
263 4eun_A Thermoresistant glucoki 94.5 0.023 7.9E-07 50.8 3.7 28 45-72 29-56 (200)
264 1zp6_A Hypothetical protein AT 94.5 0.02 7E-07 50.4 3.3 22 46-67 10-31 (191)
265 3kjh_A CO dehydrogenase/acetyl 94.4 0.043 1.5E-06 50.5 5.5 66 121-195 130-195 (254)
266 3a00_A Guanylate kinase, GMP k 94.4 0.019 6.4E-07 50.8 2.8 21 47-67 3-23 (186)
267 1kag_A SKI, shikimate kinase I 94.4 0.021 7.1E-07 49.5 3.0 26 46-71 5-30 (173)
268 3tr0_A Guanylate kinase, GMP k 94.4 0.022 7.4E-07 50.9 3.2 23 46-68 8-30 (205)
269 3ney_A 55 kDa erythrocyte memb 94.4 0.023 7.8E-07 50.9 3.3 26 43-68 17-42 (197)
270 4gp7_A Metallophosphoesterase; 94.3 0.021 7.1E-07 49.8 2.8 20 46-65 10-29 (171)
271 1znw_A Guanylate kinase, GMP k 94.2 0.025 8.5E-07 50.9 3.3 23 46-68 21-43 (207)
272 3kb2_A SPBC2 prophage-derived 94.2 0.03 1E-06 48.3 3.6 25 46-70 2-26 (173)
273 1g3q_A MIND ATPase, cell divis 94.2 0.065 2.2E-06 48.9 6.1 65 122-195 111-175 (237)
274 3lw7_A Adenylate kinase relate 94.2 0.028 9.6E-07 48.4 3.4 25 46-71 2-26 (179)
275 2ph1_A Nucleotide-binding prot 94.2 0.086 2.9E-06 49.2 7.0 68 121-195 127-194 (262)
276 3tau_A Guanylate kinase, GMP k 94.1 0.027 9.2E-07 50.8 3.3 25 44-68 7-31 (208)
277 1tev_A UMP-CMP kinase; ploop, 94.1 0.034 1.2E-06 48.9 3.9 27 45-71 3-29 (196)
278 3t61_A Gluconokinase; PSI-biol 94.1 0.028 9.6E-07 50.2 3.3 27 45-71 18-44 (202)
279 1bif_A 6-phosphofructo-2-kinas 94.1 0.017 5.9E-07 59.1 2.0 25 43-67 37-61 (469)
280 1z6g_A Guanylate kinase; struc 94.0 0.026 9E-07 51.3 3.1 24 45-68 23-46 (218)
281 2j41_A Guanylate kinase; GMP, 94.0 0.027 9.4E-07 50.2 3.1 23 45-67 6-28 (207)
282 3vaa_A Shikimate kinase, SK; s 94.0 0.034 1.2E-06 49.6 3.7 29 43-71 23-51 (199)
283 3cm0_A Adenylate kinase; ATP-b 94.0 0.041 1.4E-06 48.2 4.1 27 45-71 4-30 (186)
284 1hyq_A MIND, cell division inh 94.0 0.078 2.7E-06 49.3 6.3 65 122-195 110-174 (263)
285 2bbw_A Adenylate kinase 4, AK4 93.9 0.038 1.3E-06 51.1 4.0 28 45-72 27-54 (246)
286 3trf_A Shikimate kinase, SK; a 93.9 0.036 1.2E-06 48.6 3.6 27 45-71 5-31 (185)
287 2rhm_A Putative kinase; P-loop 93.9 0.043 1.5E-06 48.3 4.1 27 45-71 5-31 (193)
288 2rcn_A Probable GTPase ENGC; Y 93.8 0.03 1E-06 55.0 3.1 21 46-66 216-236 (358)
289 1aky_A Adenylate kinase; ATP:A 93.7 0.039 1.3E-06 50.0 3.7 29 43-71 2-30 (220)
290 1s96_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 50.5 3.3 25 44-68 15-39 (219)
291 1htw_A HI0065; nucleotide-bind 93.7 0.039 1.3E-06 47.5 3.3 26 43-68 31-56 (158)
292 2bdt_A BH3686; alpha-beta prot 93.7 0.034 1.2E-06 49.0 3.0 22 46-67 3-24 (189)
293 1cke_A CK, MSSA, protein (cyti 93.6 0.042 1.4E-06 49.9 3.7 25 46-70 6-30 (227)
294 1ly1_A Polynucleotide kinase; 93.6 0.038 1.3E-06 48.0 3.2 22 46-67 3-24 (181)
295 2jeo_A Uridine-cytidine kinase 93.6 0.044 1.5E-06 50.7 3.7 28 44-71 24-51 (245)
296 2plr_A DTMP kinase, probable t 93.6 0.05 1.7E-06 48.6 4.0 27 45-71 4-30 (213)
297 1ukz_A Uridylate kinase; trans 93.6 0.054 1.8E-06 48.3 4.2 30 42-71 12-41 (203)
298 2cdn_A Adenylate kinase; phosp 93.6 0.05 1.7E-06 48.5 4.0 34 38-71 13-46 (201)
299 1qhx_A CPT, protein (chloramph 93.5 0.044 1.5E-06 47.6 3.5 25 46-70 4-28 (178)
300 1xjc_A MOBB protein homolog; s 93.5 0.039 1.3E-06 48.1 3.1 23 45-67 4-26 (169)
301 2jaq_A Deoxyguanosine kinase; 93.5 0.047 1.6E-06 48.4 3.7 25 47-71 2-26 (205)
302 1uj2_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 50.7 3.9 28 43-70 20-47 (252)
303 1np6_A Molybdopterin-guanine d 93.5 0.04 1.4E-06 48.3 3.2 23 45-67 6-28 (174)
304 2c95_A Adenylate kinase 1; tra 93.5 0.048 1.6E-06 48.1 3.8 28 44-71 8-35 (196)
305 3fb4_A Adenylate kinase; psych 93.5 0.046 1.6E-06 49.3 3.6 25 47-71 2-26 (216)
306 2pcj_A ABC transporter, lipopr 93.5 0.039 1.3E-06 50.5 3.2 21 46-66 31-51 (224)
307 3tif_A Uncharacterized ABC tra 93.5 0.037 1.3E-06 51.0 3.0 21 46-66 32-52 (235)
308 1kht_A Adenylate kinase; phosp 93.4 0.038 1.3E-06 48.5 2.9 25 46-70 4-28 (192)
309 2qor_A Guanylate kinase; phosp 93.4 0.034 1.2E-06 49.9 2.6 25 45-69 12-36 (204)
310 2yv5_A YJEQ protein; hydrolase 93.4 0.04 1.4E-06 52.9 3.1 21 46-66 166-186 (302)
311 3tlx_A Adenylate kinase 2; str 93.3 0.058 2E-06 49.9 4.1 28 44-71 28-55 (243)
312 1jjv_A Dephospho-COA kinase; P 93.3 0.045 1.5E-06 49.0 3.2 25 46-71 3-27 (206)
313 1uf9_A TT1252 protein; P-loop, 93.3 0.049 1.7E-06 48.3 3.5 26 43-68 6-31 (203)
314 2if2_A Dephospho-COA kinase; a 93.3 0.042 1.4E-06 49.0 3.0 24 46-70 2-25 (204)
315 1rz3_A Hypothetical protein rb 93.3 0.044 1.5E-06 49.0 3.1 25 43-67 20-44 (201)
316 3lnc_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 51.0 2.2 23 44-66 26-48 (231)
317 2qt1_A Nicotinamide riboside k 93.2 0.057 1.9E-06 48.4 3.8 25 43-67 19-43 (207)
318 2yvu_A Probable adenylyl-sulfa 93.2 0.055 1.9E-06 47.5 3.6 26 42-67 10-35 (186)
319 1qf9_A UMP/CMP kinase, protein 93.2 0.073 2.5E-06 46.6 4.4 27 45-71 6-32 (194)
320 3dl0_A Adenylate kinase; phosp 93.2 0.05 1.7E-06 49.0 3.4 25 47-71 2-26 (216)
321 3b85_A Phosphate starvation-in 93.2 0.045 1.5E-06 49.5 3.0 22 46-67 23-44 (208)
322 1nks_A Adenylate kinase; therm 93.2 0.052 1.8E-06 47.6 3.4 25 46-70 2-26 (194)
323 1y63_A LMAJ004144AAA protein; 93.1 0.062 2.1E-06 47.2 3.8 25 44-68 9-33 (184)
324 2v9p_A Replication protein E1; 93.1 0.048 1.6E-06 52.4 3.2 26 43-68 124-149 (305)
325 3uie_A Adenylyl-sulfate kinase 93.1 0.053 1.8E-06 48.4 3.3 24 44-67 24-47 (200)
326 1ex7_A Guanylate kinase; subst 93.1 0.053 1.8E-06 48.1 3.2 21 48-68 4-24 (186)
327 2eyu_A Twitching motility prot 93.1 0.052 1.8E-06 50.9 3.3 24 44-67 24-47 (261)
328 3aez_A Pantothenate kinase; tr 93.1 0.051 1.7E-06 52.4 3.3 27 42-68 87-113 (312)
329 3tqc_A Pantothenate kinase; bi 93.0 0.055 1.9E-06 52.4 3.5 28 42-69 89-116 (321)
330 2wwf_A Thymidilate kinase, put 93.0 0.057 2E-06 48.3 3.5 25 44-68 9-33 (212)
331 2bwj_A Adenylate kinase 5; pho 93.0 0.054 1.8E-06 47.9 3.3 27 45-71 12-38 (199)
332 2onk_A Molybdate/tungstate ABC 93.0 0.05 1.7E-06 50.4 3.1 21 46-66 25-45 (240)
333 3zvl_A Bifunctional polynucleo 93.0 0.14 4.6E-06 51.5 6.6 26 42-67 255-280 (416)
334 2cbz_A Multidrug resistance-as 93.0 0.048 1.6E-06 50.4 3.0 21 46-66 32-52 (237)
335 2pze_A Cystic fibrosis transme 92.9 0.05 1.7E-06 49.9 3.0 21 46-66 35-55 (229)
336 2i3b_A HCR-ntpase, human cance 92.9 0.054 1.8E-06 48.1 3.1 21 47-67 3-23 (189)
337 2vli_A Antibiotic resistance p 92.9 0.046 1.6E-06 47.7 2.6 26 45-70 5-30 (183)
338 4g1u_C Hemin import ATP-bindin 92.9 0.051 1.7E-06 51.1 3.0 21 46-66 38-58 (266)
339 1mv5_A LMRA, multidrug resista 92.9 0.051 1.7E-06 50.4 3.0 21 46-66 29-49 (243)
340 2f1r_A Molybdopterin-guanine d 92.9 0.03 1E-06 49.0 1.2 22 46-67 3-24 (171)
341 1odf_A YGR205W, hypothetical 3 92.8 0.061 2.1E-06 51.3 3.5 26 42-67 28-53 (290)
342 3iij_A Coilin-interacting nucl 92.8 0.058 2E-06 47.1 3.1 26 45-70 11-36 (180)
343 1g6h_A High-affinity branched- 92.8 0.052 1.8E-06 50.8 3.0 21 46-66 34-54 (257)
344 1zd8_A GTP:AMP phosphotransfer 92.8 0.063 2.2E-06 48.9 3.5 27 45-71 7-33 (227)
345 4e22_A Cytidylate kinase; P-lo 92.8 0.064 2.2E-06 49.9 3.5 28 44-71 26-53 (252)
346 3gfo_A Cobalt import ATP-bindi 92.8 0.053 1.8E-06 51.3 3.0 21 46-66 35-55 (275)
347 3umf_A Adenylate kinase; rossm 92.7 0.092 3.2E-06 47.7 4.4 29 43-71 27-55 (217)
348 2ff7_A Alpha-hemolysin translo 92.7 0.055 1.9E-06 50.3 3.0 21 46-66 36-56 (247)
349 1b0u_A Histidine permease; ABC 92.7 0.054 1.9E-06 50.8 3.0 21 46-66 33-53 (262)
350 1sgw_A Putative ABC transporte 92.7 0.052 1.8E-06 49.3 2.7 21 46-66 36-56 (214)
351 1nn5_A Similar to deoxythymidy 92.7 0.06 2.1E-06 48.2 3.1 25 44-68 8-32 (215)
352 1ji0_A ABC transporter; ATP bi 92.7 0.056 1.9E-06 50.0 3.0 21 46-66 33-53 (240)
353 2d2e_A SUFC protein; ABC-ATPas 92.7 0.059 2E-06 50.1 3.1 22 46-67 30-51 (250)
354 2v54_A DTMP kinase, thymidylat 92.6 0.06 2.1E-06 47.8 3.0 25 45-69 4-28 (204)
355 2ghi_A Transport protein; mult 92.6 0.058 2E-06 50.5 3.0 21 46-66 47-67 (260)
356 1u0l_A Probable GTPase ENGC; p 92.6 0.057 1.9E-06 51.7 3.0 21 46-66 170-190 (301)
357 1via_A Shikimate kinase; struc 92.6 0.065 2.2E-06 46.5 3.1 25 47-71 6-30 (175)
358 2ehv_A Hypothetical protein PH 92.6 0.062 2.1E-06 49.3 3.1 22 45-66 30-51 (251)
359 2olj_A Amino acid ABC transpor 92.6 0.059 2E-06 50.6 3.0 21 46-66 51-71 (263)
360 1e4v_A Adenylate kinase; trans 92.5 0.08 2.7E-06 47.7 3.8 25 47-71 2-26 (214)
361 3la6_A Tyrosine-protein kinase 92.5 0.23 7.8E-06 47.1 7.1 66 122-195 201-266 (286)
362 2pt5_A Shikimate kinase, SK; a 92.5 0.084 2.9E-06 45.3 3.7 24 47-70 2-25 (168)
363 2qi9_C Vitamin B12 import ATP- 92.5 0.062 2.1E-06 50.0 3.0 21 46-66 27-47 (249)
364 1vpl_A ABC transporter, ATP-bi 92.4 0.063 2.1E-06 50.2 3.0 21 46-66 42-62 (256)
365 3be4_A Adenylate kinase; malar 92.4 0.089 3E-06 47.6 3.9 27 45-71 5-31 (217)
366 1sq5_A Pantothenate kinase; P- 92.4 0.095 3.2E-06 50.3 4.2 27 43-69 78-104 (308)
367 2zu0_C Probable ATP-dependent 92.3 0.069 2.4E-06 50.2 3.1 22 46-67 47-68 (267)
368 1zuh_A Shikimate kinase; alpha 92.3 0.089 3E-06 45.3 3.6 27 45-71 7-33 (168)
369 4a74_A DNA repair and recombin 92.3 0.073 2.5E-06 48.2 3.2 23 45-67 25-47 (231)
370 2ixe_A Antigen peptide transpo 92.3 0.067 2.3E-06 50.4 3.0 21 46-66 46-66 (271)
371 2yz2_A Putative ABC transporte 92.3 0.068 2.3E-06 50.2 3.0 21 46-66 34-54 (266)
372 2ihy_A ABC transporter, ATP-bi 92.2 0.069 2.4E-06 50.6 3.0 21 46-66 48-68 (279)
373 2grj_A Dephospho-COA kinase; T 92.2 0.11 3.7E-06 46.3 4.1 29 43-71 10-38 (192)
374 1ak2_A Adenylate kinase isoenz 92.2 0.09 3.1E-06 48.1 3.7 29 43-71 14-42 (233)
375 1gvn_B Zeta; postsegregational 92.1 0.089 3.1E-06 50.0 3.7 27 43-69 31-57 (287)
376 2p5t_B PEZT; postsegregational 92.1 0.077 2.6E-06 49.3 3.2 29 42-70 29-57 (253)
377 2nq2_C Hypothetical ABC transp 92.1 0.07 2.4E-06 49.7 2.9 21 46-66 32-52 (253)
378 3ec2_A DNA replication protein 92.1 0.072 2.5E-06 46.5 2.8 23 45-67 38-60 (180)
379 1zak_A Adenylate kinase; ATP:A 92.1 0.08 2.7E-06 48.0 3.2 26 46-71 6-31 (222)
380 1nij_A Hypothetical protein YJ 92.1 0.084 2.9E-06 51.0 3.5 24 44-67 3-26 (318)
381 3kta_A Chromosome segregation 92.1 0.093 3.2E-06 45.8 3.5 24 47-70 28-51 (182)
382 1wcv_1 SOJ, segregation protei 91.9 0.51 1.7E-05 43.6 8.7 66 121-195 110-181 (257)
383 1vht_A Dephospho-COA kinase; s 91.9 0.092 3.1E-06 47.4 3.3 25 45-70 4-28 (218)
384 2pez_A Bifunctional 3'-phospho 91.8 0.093 3.2E-06 45.7 3.2 24 44-67 4-27 (179)
385 2pbr_A DTMP kinase, thymidylat 91.8 0.084 2.9E-06 46.3 2.9 22 47-68 2-23 (195)
386 3jvv_A Twitching mobility prot 91.8 0.089 3.1E-06 51.7 3.3 22 46-67 124-145 (356)
387 2kjq_A DNAA-related protein; s 91.8 0.09 3.1E-06 44.7 3.0 24 44-67 35-58 (149)
388 3sr0_A Adenylate kinase; phosp 91.8 0.11 3.8E-06 46.8 3.7 25 47-71 2-26 (206)
389 2gza_A Type IV secretion syste 91.8 0.073 2.5E-06 52.4 2.7 22 45-66 175-196 (361)
390 3bfv_A CAPA1, CAPB2, membrane 91.8 0.33 1.1E-05 45.6 7.2 66 122-195 191-256 (271)
391 2z0h_A DTMP kinase, thymidylat 91.7 0.11 3.6E-06 45.8 3.5 23 47-69 2-24 (197)
392 3r20_A Cytidylate kinase; stru 91.6 0.11 3.8E-06 47.7 3.6 28 44-71 8-35 (233)
393 2ze6_A Isopentenyl transferase 91.6 0.12 4.1E-06 48.0 3.9 25 46-70 2-26 (253)
394 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.9E-06 47.1 3.6 24 47-70 2-25 (223)
395 2pjz_A Hypothetical protein ST 91.6 0.09 3.1E-06 49.3 3.0 21 46-66 31-51 (263)
396 2bbs_A Cystic fibrosis transme 91.5 0.096 3.3E-06 49.9 3.1 21 46-66 65-85 (290)
397 1q3t_A Cytidylate kinase; nucl 91.5 0.12 4.1E-06 47.3 3.7 31 41-71 12-42 (236)
398 1gtv_A TMK, thymidylate kinase 91.5 0.048 1.7E-06 48.9 0.9 21 47-67 2-22 (214)
399 2iyv_A Shikimate kinase, SK; t 91.5 0.12 4E-06 45.2 3.4 26 46-71 3-28 (184)
400 1e6c_A Shikimate kinase; phosp 91.5 0.12 4E-06 44.6 3.4 26 46-71 3-28 (173)
401 3a4m_A L-seryl-tRNA(SEC) kinas 91.5 0.1 3.5E-06 48.7 3.2 23 45-67 4-26 (260)
402 3nh6_A ATP-binding cassette SU 91.4 0.06 2.1E-06 51.7 1.6 22 45-66 80-101 (306)
403 2f6r_A COA synthase, bifunctio 91.2 0.13 4.3E-06 48.8 3.6 28 43-71 73-100 (281)
404 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.079 2.7E-06 51.5 2.2 22 45-66 171-192 (330)
405 3tui_C Methionine import ATP-b 91.1 0.1 3.6E-06 51.2 3.0 21 46-66 55-75 (366)
406 1lw7_A Transcriptional regulat 91.1 0.093 3.2E-06 51.7 2.6 25 45-69 170-194 (365)
407 2ewv_A Twitching motility prot 91.1 0.12 4.2E-06 51.0 3.5 24 44-67 135-158 (372)
408 3ea0_A ATPase, para family; al 91.0 0.18 6.2E-06 46.1 4.4 65 122-195 118-184 (245)
409 2vp4_A Deoxynucleoside kinase; 91.0 0.097 3.3E-06 47.8 2.5 28 43-70 18-45 (230)
410 3nwj_A ATSK2; P loop, shikimat 90.9 0.12 4.2E-06 48.0 3.1 27 45-71 48-74 (250)
411 2oze_A ORF delta'; para, walke 90.9 0.63 2.1E-05 44.0 8.2 65 122-195 154-224 (298)
412 3cio_A ETK, tyrosine-protein k 90.9 0.49 1.7E-05 45.1 7.4 66 122-195 213-278 (299)
413 3k9g_A PF-32 protein; ssgcid, 90.8 0.61 2.1E-05 43.3 8.0 65 121-195 143-209 (267)
414 3fvq_A Fe(3+) IONS import ATP- 90.7 0.12 3.9E-06 50.8 2.9 52 172-233 144-196 (359)
415 1p9r_A General secretion pathw 90.6 0.13 4.6E-06 51.5 3.3 25 44-68 166-190 (418)
416 2oap_1 GSPE-2, type II secreti 90.6 0.096 3.3E-06 54.1 2.3 21 46-66 261-281 (511)
417 4eaq_A DTMP kinase, thymidylat 90.5 0.21 7.1E-06 45.7 4.3 27 44-70 25-51 (229)
418 3q9l_A Septum site-determining 90.5 0.28 9.6E-06 45.2 5.2 65 122-195 113-185 (260)
419 2x8a_A Nuclear valosin-contain 90.4 0.15 5.3E-06 47.9 3.4 24 47-70 46-69 (274)
420 2vhj_A Ntpase P4, P4; non- hyd 90.4 0.31 1.1E-05 46.9 5.4 21 47-67 125-145 (331)
421 1m7g_A Adenylylsulfate kinase; 90.4 0.16 5.4E-06 45.6 3.3 23 45-67 25-47 (211)
422 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.16 5.4E-06 43.1 3.1 23 47-69 25-47 (149)
423 1z47_A CYSA, putative ABC-tran 90.2 0.14 4.8E-06 50.2 3.0 47 169-220 149-196 (355)
424 2yyz_A Sugar ABC transporter, 90.2 0.14 4.9E-06 50.2 3.0 47 169-220 137-184 (359)
425 3rlf_A Maltose/maltodextrin im 90.0 0.14 4.7E-06 50.7 2.7 49 175-233 142-191 (381)
426 2it1_A 362AA long hypothetical 89.9 0.15 5.2E-06 50.1 3.0 21 46-66 30-50 (362)
427 3gmt_A Adenylate kinase; ssgci 89.9 0.21 7.1E-06 45.7 3.6 28 44-71 7-34 (230)
428 2w0m_A SSO2452; RECA, SSPF, un 89.8 0.2 6.7E-06 45.2 3.5 22 46-67 24-45 (235)
429 1g29_1 MALK, maltose transport 89.8 0.16 5.4E-06 50.2 3.0 47 169-220 143-190 (372)
430 3ake_A Cytidylate kinase; CMP 89.8 0.22 7.4E-06 44.2 3.7 24 47-70 4-27 (208)
431 1v43_A Sugar-binding transport 89.8 0.16 5.4E-06 50.1 3.0 49 168-220 144-192 (372)
432 1a7j_A Phosphoribulokinase; tr 89.5 0.12 4E-06 49.2 1.7 27 44-70 4-30 (290)
433 1p5z_B DCK, deoxycytidine kina 89.4 0.13 4.5E-06 48.0 2.0 27 42-68 21-47 (263)
434 1ixz_A ATP-dependent metallopr 89.3 0.22 7.4E-06 46.0 3.4 23 47-69 51-73 (254)
435 2xj4_A MIPZ; replication, cell 89.2 0.51 1.7E-05 44.5 6.0 36 122-159 103-138 (286)
436 3gd7_A Fusion complex of cysti 89.1 0.21 7.2E-06 49.6 3.3 21 46-66 48-68 (390)
437 2npi_A Protein CLP1; CLP1-PCF1 89.1 0.18 6.2E-06 51.3 2.9 24 44-67 137-160 (460)
438 1v5w_A DMC1, meiotic recombina 89.0 1.2 4.2E-05 43.1 8.7 23 45-67 122-144 (343)
439 1cr0_A DNA primase/helicase; R 88.8 0.22 7.7E-06 47.2 3.2 22 46-67 36-57 (296)
440 3d31_A Sulfate/molybdate ABC t 88.8 0.12 4.3E-06 50.4 1.4 44 173-220 134-178 (348)
441 3qf7_A RAD50; ABC-ATPase, ATPa 88.6 0.22 7.5E-06 49.0 3.1 22 47-68 25-46 (365)
442 1svm_A Large T antigen; AAA+ f 88.5 0.28 9.6E-06 48.5 3.7 26 43-68 167-192 (377)
443 2obl_A ESCN; ATPase, hydrolase 88.5 0.26 8.9E-06 48.2 3.4 24 45-68 71-94 (347)
444 1ltq_A Polynucleotide kinase; 88.4 0.24 8.3E-06 46.9 3.2 22 46-67 3-24 (301)
445 1jbk_A CLPB protein; beta barr 88.2 0.3 1E-05 42.1 3.4 23 45-67 43-65 (195)
446 2cvh_A DNA repair and recombin 88.2 0.26 8.9E-06 44.1 3.1 22 46-67 21-42 (220)
447 1iy2_A ATP-dependent metallopr 88.1 0.28 9.6E-06 46.0 3.4 23 47-69 75-97 (278)
448 2h92_A Cytidylate kinase; ross 88.1 0.26 8.7E-06 44.3 2.9 26 45-70 3-28 (219)
449 1in4_A RUVB, holliday junction 88.0 0.28 9.7E-06 47.5 3.4 26 45-70 51-76 (334)
450 1lv7_A FTSH; alpha/beta domain 87.8 0.35 1.2E-05 44.7 3.7 24 45-68 45-68 (257)
451 1oxx_K GLCV, glucose, ABC tran 87.8 0.14 4.7E-06 50.3 0.9 21 46-66 32-52 (353)
452 1n0w_A DNA repair protein RAD5 87.8 0.3 1E-05 44.4 3.3 22 46-67 25-46 (243)
453 3euj_A Chromosome partition pr 87.6 0.29 1E-05 49.9 3.3 22 46-67 30-51 (483)
454 3crm_A TRNA delta(2)-isopenten 87.4 0.39 1.3E-05 46.3 3.9 25 46-70 6-30 (323)
455 3hr8_A Protein RECA; alpha and 87.3 1.3 4.5E-05 43.2 7.6 22 45-66 61-82 (356)
456 1xwi_A SKD1 protein; VPS4B, AA 87.3 1.1 3.8E-05 43.0 7.1 25 43-67 43-67 (322)
457 3b60_A Lipid A export ATP-bind 87.1 0.29 1E-05 51.3 3.1 22 45-66 369-390 (582)
458 1yqt_A RNAse L inhibitor; ATP- 87.1 0.29 1E-05 50.8 3.0 22 45-66 47-68 (538)
459 2ocp_A DGK, deoxyguanosine kin 87.0 0.37 1.3E-05 44.1 3.4 24 46-69 3-26 (241)
460 3b5x_A Lipid A export ATP-bind 86.9 0.3 1E-05 51.2 3.0 22 45-66 369-390 (582)
461 3qks_A DNA double-strand break 86.8 0.32 1.1E-05 43.5 2.7 24 47-70 25-48 (203)
462 2dpy_A FLII, flagellum-specifi 86.6 0.38 1.3E-05 48.6 3.4 23 45-67 157-179 (438)
463 3d3q_A TRNA delta(2)-isopenten 86.5 0.46 1.6E-05 46.1 3.8 25 46-70 8-32 (340)
464 2w58_A DNAI, primosome compone 86.5 0.43 1.5E-05 42.1 3.5 22 46-67 55-76 (202)
465 3ozx_A RNAse L inhibitor; ATP 86.4 0.33 1.1E-05 50.4 3.0 22 46-67 26-47 (538)
466 1nlf_A Regulatory protein REPA 86.3 0.42 1.4E-05 44.8 3.4 23 45-67 30-52 (279)
467 3qf4_B Uncharacterized ABC tra 86.2 0.31 1.1E-05 51.3 2.7 23 44-66 380-402 (598)
468 2yl4_A ATP-binding cassette SU 86.1 0.3 1E-05 51.4 2.6 21 46-66 371-391 (595)
469 3bos_A Putative DNA replicatio 86.1 0.44 1.5E-05 42.9 3.4 24 44-67 51-74 (242)
470 3exa_A TRNA delta(2)-isopenten 86.0 0.48 1.6E-05 45.4 3.6 25 45-69 3-27 (322)
471 3j16_B RLI1P; ribosome recycli 85.7 0.38 1.3E-05 50.7 3.0 23 45-67 103-125 (608)
472 3bk7_A ABC transporter ATP-bin 85.6 0.38 1.3E-05 50.7 3.0 22 45-66 117-138 (607)
473 1yqt_A RNAse L inhibitor; ATP- 85.5 0.41 1.4E-05 49.7 3.1 21 46-66 313-333 (538)
474 1xp8_A RECA protein, recombina 85.5 0.96 3.3E-05 44.4 5.6 22 46-67 75-96 (366)
475 3foz_A TRNA delta(2)-isopenten 85.5 0.6 2.1E-05 44.6 4.0 26 45-70 10-35 (316)
476 2qmh_A HPR kinase/phosphorylas 85.4 0.53 1.8E-05 42.0 3.4 21 46-66 35-55 (205)
477 4a82_A Cystic fibrosis transme 85.4 0.27 9.3E-06 51.6 1.7 22 45-66 367-388 (578)
478 4b4t_L 26S protease subunit RP 85.4 1.1 3.6E-05 45.2 5.9 28 41-68 211-238 (437)
479 3ozx_A RNAse L inhibitor; ATP 85.4 0.4 1.4E-05 49.7 3.0 20 47-66 296-315 (538)
480 2p65_A Hypothetical protein PF 85.4 0.4 1.4E-05 41.2 2.6 23 45-67 43-65 (187)
481 3tqf_A HPR(Ser) kinase; transf 85.2 0.5 1.7E-05 41.2 3.0 21 46-66 17-37 (181)
482 2ga8_A Hypothetical 39.9 kDa p 85.2 0.53 1.8E-05 45.9 3.5 25 44-68 23-47 (359)
483 3lv8_A DTMP kinase, thymidylat 85.1 0.5 1.7E-05 43.4 3.1 25 43-67 25-49 (236)
484 4edh_A DTMP kinase, thymidylat 84.9 0.54 1.8E-05 42.4 3.2 25 43-67 4-28 (213)
485 2dr3_A UPF0273 protein PH0284; 84.8 0.6 2E-05 42.4 3.6 21 46-66 24-44 (247)
486 1e69_A Chromosome segregation 84.7 0.42 1.4E-05 46.0 2.6 24 47-70 26-49 (322)
487 3bk7_A ABC transporter ATP-bin 84.7 0.47 1.6E-05 50.0 3.1 20 47-66 384-403 (607)
488 3qf4_A ABC transporter, ATP-bi 84.5 0.33 1.1E-05 51.0 1.9 22 45-66 369-390 (587)
489 3a8t_A Adenylate isopentenyltr 84.3 0.55 1.9E-05 45.5 3.2 24 46-69 41-64 (339)
490 3t15_A Ribulose bisphosphate c 84.2 0.76 2.6E-05 43.5 4.1 29 42-70 33-61 (293)
491 4he6_A Peptidase family U32; u 84.2 0.95 3.3E-05 34.5 3.9 55 295-353 26-85 (89)
492 1byi_A Dethiobiotin synthase; 84.1 2.3 7.7E-05 38.0 7.2 68 121-195 107-179 (224)
493 2qz4_A Paraplegin; AAA+, SPG7, 83.9 0.69 2.4E-05 42.5 3.7 26 43-68 37-62 (262)
494 3vfd_A Spastin; ATPase, microt 83.8 1.9 6.6E-05 42.4 7.1 23 44-66 147-169 (389)
495 3qkt_A DNA double-strand break 83.8 0.56 1.9E-05 45.5 3.1 21 48-68 26-46 (339)
496 3cf0_A Transitional endoplasmi 83.8 0.65 2.2E-05 44.1 3.5 28 43-70 47-74 (301)
497 3b9p_A CG5977-PA, isoform A; A 83.8 0.65 2.2E-05 43.7 3.5 26 44-69 53-78 (297)
498 4aby_A DNA repair protein RECN 83.7 0.25 8.4E-06 49.3 0.5 24 47-70 62-85 (415)
499 3v9p_A DTMP kinase, thymidylat 83.7 0.5 1.7E-05 43.1 2.5 24 44-67 24-47 (227)
500 2b8t_A Thymidine kinase; deoxy 83.7 0.96 3.3E-05 41.1 4.4 42 147-196 88-129 (223)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.2e-82 Score=653.83 Aligned_cols=427 Identities=58% Similarity=0.975 Sum_probs=408.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...++++||+++||+|+|||||+++|++.++.+....+.++++++.+.|+.++.++|++|..++|+++|+|++.....++
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+++++++|+|||||++|.++|..+++.+|++||||||.+|.++++|+..+|+++|+.++..+++|++||++||||++.++
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 99999999999999999999999999999999999999999999998889999999999999999899999999998888
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEE
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 279 (476)
|++++++++.+++..+++.+|+....+++++|+||++|.|+.++.+ .++||.|++|++.|+.++.+.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v 249 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPI 249 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc--cccccCchHHHHHHHhCCCCccCCCCCeEEEE
Confidence 9999999999999999999998644468999999999999999876 48999999999999999998888899999999
Q ss_pred EEEEccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCC
Q 011836 280 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 280 ~~~~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
.++|++.|++++|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|+++|+|++..+++|||+|++++++
T Consensus 250 ~~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 250 VDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred EEEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011836 360 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
++.++.|+|++.| +++ +++..||++.+|+|+.+++|+|..|.+++|.+||+..+.+|++|+.|+.+.|++++.+|+
T Consensus 330 ~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~ 406 (439)
T 3j2k_7 330 CHSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTI 406 (439)
T ss_pred CceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeE
Confidence 8899999999999 555 569999999999999999999999999999999998889999999999999999999999
Q ss_pred EeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011836 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 439 ~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~ 471 (476)
|+|+|.+|+.+|||+|||+|+|+|+|+|+++.+
T Consensus 407 ~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 407 CLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 999999999999999999999999999999863
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=9.6e-79 Score=631.48 Aligned_cols=425 Identities=52% Similarity=0.940 Sum_probs=361.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|+|||||+++|++.+|.++.+.+.++.++..+.|++++.+++++|..++|+++|+|++..+..+++
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
+++.++|+|||||.+|.++|.++++.+|++|||||+.+|.++++|+..+||++|+.++..+++|++||++||||++.++|
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 99999999999999999999999999999999999999999889987789999999999999988999999999987778
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEE
Q 011836 201 SKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~-g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 279 (476)
++++++++.+++..+++.+ |+....+++++|+||++|.|+.++++...++||.|++|++.|+.++.|.++.+.|++++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEEC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEE
Confidence 8899999999999999988 774212578999999999999998876678999999999999999988777789999999
Q ss_pred EEEEccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 280 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 280 ~~~~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
+++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+++|.| +..++++||+|+++++
T Consensus 279 ~~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 279 ASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKN 357 (467)
T ss_dssp CEEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSS
T ss_pred EEEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCC
Confidence 9999999999999999999999999999999999999999998 9999999999999999999 8889999999999998
Q ss_pred CcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011836 359 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
++..++.|+|++.|| .+ +++..||++.+|+++.+++|++..|.+.+|. +++..+++|++|++|+.+.|+|+|.+|
T Consensus 358 ~~~~~~~f~a~v~~l---~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p 433 (467)
T 1r5b_A 358 PVHATTRFIAQIAIL---ELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTP 433 (467)
T ss_dssp CCCEEEEEEEEEEEC---SSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEE
T ss_pred CCccceEEEEEEEEe---CCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcE
Confidence 999999999999994 44 6799999999999999999999999889998 888878889999999999999999999
Q ss_pred EEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 438 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 438 i~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
+|++.|.+++.||||+||+.|+|+|+|+|+++.
T Consensus 434 ~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 434 VCMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp EECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 999999999999999999999999999999875
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1.9e-74 Score=597.81 Aligned_cols=423 Identities=38% Similarity=0.691 Sum_probs=395.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++||+|+|||||+++|++.++.++.+.+.++.+++.+.|+.++.+++++|..++|+++|+|++..+..+++.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+++++|+|||||.+|.+++..+++.+|++|||||+.++.++++|+...|+++|+.++..+++|++||++||||+ .+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCC
Confidence 99999999999999999999999999999999999999888788767799999999999999889999999999 5567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCC------------hhhHHHHHhhCCCCCC
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPR 269 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~------------g~~L~~~l~~l~~~~~ 269 (476)
+++++++.+++..+++.+++.. .+++++|+||++|.|+.++... ++||. +++|++.|+.+++|.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 8889999999999999988742 2478999999999999987654 79997 5789999999988888
Q ss_pred CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccc
Q 011836 270 DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 347 (476)
Q Consensus 270 ~~~~~~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i 347 (476)
..+.|++++|.++|+ +.|+|++|+|.+|.|++||+|.+.|.+..++|++|++++.++++|.|||+|++.|+|++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 899999999999995 889999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeeEEecCCC-CcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCC
Q 011836 348 LSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNG 425 (476)
Q Consensus 348 ~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g 425 (476)
++|++|+++++ ++..++.|+|++.|+ .+ .++..||++.+|+++.+++|+|..|.+++|.++++..+++|++|++|
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l---~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g 395 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVL---NHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSG 395 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEEC---SCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTT
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEe---CCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCC
Confidence 99999999985 888999999999994 44 68999999999999999999999999999999999888899999999
Q ss_pred CEEEEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 426 AIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 426 ~~a~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
+.+.|+|+|.+|+|++.|.+++.+|||+||++|+|+|+|+|+++.+.
T Consensus 396 ~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 396 DAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp CEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred CEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999998764
No 4
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=7.7e-74 Score=590.53 Aligned_cols=426 Identities=38% Similarity=0.705 Sum_probs=385.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++||+|+|||||+++|++.+|.++...+.+++.+..+.|+.++.+++++|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 45679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++.++|+|||||.+|..++.++++.+|++|||+|+.++.|++.+....|+++|+.++..+++|++||++||||+...+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999999777666566899999999999999779999999999666578
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEE
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 281 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 281 (476)
+++++++.+++..+++.+++.. .+++++|+||++|.|+.++.+. ++||.|++|++.|+.+++|.+..++|++++|.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 8889999999999999988752 2579999999999999998764 699999999999999888877778999999999
Q ss_pred EEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCC
Q 011836 282 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 282 ~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
+|+ +.|++++|+|.+|+|++||.|++.|++...+|++|++++.++++|.|||+|+++|+|++..++++||+|++++++
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 995 789999999999999999999999999999999999999999999999999999999988999999999999888
Q ss_pred cccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011836 360 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
+..+..|.|++.|++. +.++..||++.+|+++.+++|+|..|.+++|.++++..+++|++|++|+.+.|+|++.+|+|
T Consensus 320 ~~~~~~f~a~v~~l~~--~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 320 PTVADEFTARIIVVWH--PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp CCEESEEEEEEEECCC--SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred ceEeEEEEEEEEEECC--CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 9999999999999432 37899999999999999999999999999999999988889999999999999999999999
Q ss_pred eeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 440 ~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
++.|.+++.+|||+||+.|+|+|+|+|+++.+.
T Consensus 398 ~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 999999999999999999999999999998754
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.1e-73 Score=597.02 Aligned_cols=424 Identities=33% Similarity=0.573 Sum_probs=363.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++|+|||||+++|++.++.++...+.++.+.+.+.|+.++.++|++|....|+++|+|++.....+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++.++|+|||||.+|..++..+++.+|++|||||+.++.++++++...|+++|+.++..++++++|||+||||+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999888887767899999999999998889999999999 5677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCC-CCCCChhhHHHHHhhC----CC--CCCCCCCC
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSL-CPWWNGPCLFEALDRI----EI--TPRDPNGP 274 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~-~~w~~g~~L~~~l~~l----~~--~~~~~~~~ 274 (476)
+.+++++.+++..+++.+|+.. .+++++|+||++|.|+.++..... ++||.|++|.++|+.+ +. |.+..+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8899999999999999998852 358999999999999998764322 6899999999988876 22 45677899
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC--------CeeeeeeCCCCeEEEEecc
Q 011836 275 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLSG 341 (476)
Q Consensus 275 ~~~~i~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~--------~~~v~~a~aG~~v~i~l~~ 341 (476)
++++|+++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+++|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999995 47899999999999999999999999999999999999 4899999999999999999
Q ss_pred CCccccceeeEEecCCC-CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 011836 342 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 420 (476)
Q Consensus 342 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~ 420 (476)
++..++++||+|+++++ ++..++.|+|++.|++. ..+|..||++.+|+++.+++|+|..|.+++|.++++. +++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~--~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~ 423 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 423 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSC--SSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCS
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEECC--CCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCcc
Confidence 99899999999999997 89999999999999531 3789999999999999999999999999999999876 67899
Q ss_pred eecCCCEEEEEEEE---cceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011836 421 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 421 ~l~~g~~a~v~~~~---~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~ 471 (476)
+|++|+.|.|+|++ .+|+|+|+|.+|+.+|||+||++|+|||+|+|+++..
T Consensus 424 ~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 424 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 99999999999999 8899999999999999999999999999999998764
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-74 Score=612.50 Aligned_cols=424 Identities=33% Similarity=0.582 Sum_probs=393.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|+|||||+++|++..+.+....+.++.+.+.+.|+.++.++|++|....|+.+|+|++.....+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.+++++|+|||||.+|.+++..+++.+|++|+|||+..|.++++|...+|+++|+..+..++++++|||+||||+ .+|
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cch
Confidence 999999999999999999999999999999999999999888888777999999999999999889999999999 567
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCC-CCCCCChhhHHHHHhhC--CC----CCCCCCC
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI--EI----TPRDPNG 273 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~-~~~w~~g~~L~~~l~~l--~~----~~~~~~~ 273 (476)
++.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|.++|+.+ .. |.+..+.
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~ 399 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 399 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCS
T ss_pred hHHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCccccccc
Confidence 78899999999999999998852 35799999999999999986543 38999999999999987 22 3356788
Q ss_pred CceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC--------CeeeeeeCCCCeEEEEec
Q 011836 274 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLS 340 (476)
Q Consensus 274 ~~~~~i~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~--------~~~v~~a~aG~~v~i~l~ 340 (476)
|++++|.++|+ +.|+|++|+|.+|+|++||.|+++|++..++|++|+++ +.++++|.|||+|+++|+
T Consensus 400 p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~ 479 (611)
T 3izq_1 400 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 479 (611)
T ss_dssp CCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES
T ss_pred chhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEee
Confidence 99999999995 47899999999999999999999999999999999998 489999999999999999
Q ss_pred cCCccccceeeEEecCCC-CcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccc
Q 011836 341 GIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKV 419 (476)
Q Consensus 341 ~~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~ 419 (476)
+++..++++||+|+++++ ++..+..|+|++.|++. ..+|..||++.+|+|+.+++|+|..|.+++|.++++. +++|
T Consensus 480 ~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~--~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~ 556 (611)
T 3izq_1 480 KAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKI 556 (611)
T ss_dssp SCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSC--SSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCS
T ss_pred eccHhhCcceEEccCCCCCCCceeeEEEEEEEEECC--CCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCc
Confidence 998899999999999997 89999999999999431 3789999999999999999999999999999999876 7789
Q ss_pred eeecCCCEEEEEEEE---cceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 420 LFVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 420 ~~l~~g~~a~v~~~~---~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
++|++|+.|.|+|++ .+|+|++.|++++.+|||+||++|+|||+|+|+++.
T Consensus 557 ~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 557 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 999999999999999 789999999999999999999999999999999875
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-73 Score=606.38 Aligned_cols=418 Identities=33% Similarity=0.596 Sum_probs=328.2
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
.+...+++++|+++||+|+|||||+++|++.++.+....+.++.+.+.+.|+.++.++|++|..++|+++|+|++.....
T Consensus 170 ~~~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~ 249 (592)
T 3mca_A 170 EQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT 249 (592)
T ss_dssp GGSCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred hhccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
+.+.++.++|||||||.+|.++|..+++.+|++|||||+..|.|+++|...+||++|+.++..+++|++|||+||||+
T Consensus 250 ~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl-- 327 (592)
T 3mca_A 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL-- 327 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--
T ss_pred EEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--
Confidence 999999999999999999999999999999999999999999988888545899999999999999889999999999
Q ss_pred CCchHHHHHHHHHHHHHHH-HhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCce
Q 011836 198 VNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 276 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~ 276 (476)
.+|++++++++.+++..++ +.+|+.. .+++++|+||++|.|+.++.....++||.|++|++.|..+.+|.+..+.|++
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r 406 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLR 406 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCE
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccch
Confidence 5677889999999999999 8888852 3679999999999999987665578999999999999988777788899999
Q ss_pred EEEEEEEc-cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeee-eeCCCCeEEEEeccCCccccceeeEEe
Q 011836 277 MPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 277 ~~i~~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~-~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
++|.++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ +|.||++|+++|.|++..++++||+|+
T Consensus 407 ~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~ 486 (592)
T 3mca_A 407 LSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILS 486 (592)
T ss_dssp EEEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEE
T ss_pred heeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEec
Confidence 99999985 6789999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEE
Q 011836 355 SVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 433 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~ 433 (476)
+++.++..+..|+|++.|| .+ .++..||++.+|+|+.+++|+| .|.. ..+++|++|++|+.+.|+|+
T Consensus 487 ~~~~~~~~~~~f~a~v~~~---~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~ 554 (592)
T 3mca_A 487 NYENPVRRVRSFVAEIQTF---DIHGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRIS 554 (592)
T ss_dssp CSSSCCEEESEEEEEEEEC---SCSSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEE
T ss_pred cCCCCccccCeEEEEEEEE---CCCccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEE
Confidence 9998888999999999994 44 6899999999999999999999 7765 12457889999999999999
Q ss_pred -EcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 434 -VNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 434 -~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
+.+|+|+|+|.+++.+|||+||+.|+|||+|+|+++.
T Consensus 555 fl~~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 555 FLDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp ESSSCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred ECCCcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9999999999999999999999999999999999873
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.7e-68 Score=548.24 Aligned_cols=409 Identities=25% Similarity=0.431 Sum_probs=352.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..++.++|+++||+|+|||||+++|++..+.+....+.++.+.....|. .++.+++.+|..++|+++|+|++..+..+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3456799999999999999999999999888877665554444433343 45677889999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
.+.++.++|+|||||.+|.+++..+++.+|++|||+|+.++.+ .|+++|+.++..+++|++|+|+||+|+ .
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~ 170 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--N 170 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--T
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--C
Confidence 9999999999999999999999999999999999999999864 699999999999999879999999999 5
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
++++++++++.+++..+++.+++. ..+++++|+||++|.|+.++.+. ++||.|++|.++|+.++.+.+..+.|++++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~ 247 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFP 247 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEE
Confidence 556778888889999999988732 12579999999999999998764 899999999999999988888888999999
Q ss_pred EEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 279 IIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
|.++++ ..|+.+.|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|++++.+ ..++++||+|+.+
T Consensus 248 v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~ 325 (434)
T 1zun_B 248 VQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHA 325 (434)
T ss_dssp CCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEET
T ss_pred EEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECC
Confidence 999984 467789999999999999999999999999999999999999999999999999984 4579999999999
Q ss_pred CCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+++|..++.|+|++.| +...++..||++.+|+|+.+++|+|..|.+.+|.++++ ++++++|++|+.+.|+|+|.+
T Consensus 326 ~~~~~~~~~f~a~~~~---l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~ 400 (434)
T 1zun_B 326 DNVPQVSDAFDAMLVW---MAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDA 400 (434)
T ss_dssp TSCCCEEEEEEEEEEE---CCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEE
T ss_pred CCCCCcccEEEEEEEE---eccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECC
Confidence 9988999999999999 44568999999999999999999999999999999887 467889999999999999999
Q ss_pred eEEeeeccCccccceEEEEeC--CcEEEEEEEEE
Q 011836 437 SICTEKFADFAQLGRFTLRTE--GKTVAVGKVTE 468 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~~--~~tvg~G~V~~ 468 (476)
|+|+++|.+++.||||+|||. |+|||+|+|+.
T Consensus 401 p~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 401 PIALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp EEECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 999999999999999999975 89999999973
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4.5e-61 Score=489.91 Aligned_cols=378 Identities=28% Similarity=0.435 Sum_probs=326.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|+.++|+++||+|+|||||+++|+.... +.|+..+...+.+|...+|+++|+|++.....+++.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 4578999999999999999999975321 1233333334457888899999999999988898899
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+.++|+|||||.+|..++.++++.+|++|||||+.++.+ .|+++|+.++..+++|++|+++||||+.. ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl~~---~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADAVQ---DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGGCS---CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECcccCC---CH
Confidence 999999999999999999999999999999999999864 79999999999999998789999999942 35
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh--hhHHHHHhh-CCCCCCCCCCCceEEE
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g--~~L~~~l~~-l~~~~~~~~~~~~~~i 279 (476)
+.++.+.+++..+++.+++. ..+++++|+||++|.|.. .++||.| ..|++.|.. ++.|.+..+.|++++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYK-GEETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCC-cccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 66777888899999988874 235799999999999842 2689987 567776654 7888888889999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEec
Q 011836 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 280 ~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 355 (476)
+++| +++|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 9998 5889999999999999999999999975 78999999999999999999999999999999899999999999
Q ss_pred CCCCcccccEEEEEEEEccccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEE
Q 011836 356 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 432 (476)
Q Consensus 356 ~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~ 432 (476)
++ ++.+++.|+|++.||+... +.++..||++.+|+++.+++|+|. +. ..+.+|++|+.+.|+|
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~~~~~~v~~ 354 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMPGEDLKLTL 354 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCTTCEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCcccccCCCEEEEEE
Confidence 88 5678999999999965321 258999999999999999999988 31 1256799999999999
Q ss_pred EEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 433 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 433 ~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
+|.+|+|++.+ +||+||+.++|+|+|+|+++.+.
T Consensus 355 ~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 355 ILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp EEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred EECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 99999999986 69999999999999999998765
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.7e-60 Score=487.15 Aligned_cols=384 Identities=29% Similarity=0.455 Sum_probs=326.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc-cchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~-~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..++.++|+++||+|+|||||+++|+... .+.|+ ..+...+.+|...+|+.+|+|++.....++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 71 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVA---------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 71 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHH---------------HHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhh---------------hhcCccccccchhhccCCHHHHHcCCCEEeeeeEec
Confidence 34667999999999999999999997531 11222 122223468999999999999999888899
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+.++.++|+|||||.+|..++.++++.+|++|+|+|+.++.+ .|+++|+..+..+++|++++++||+|+..
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl~~-- 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDMVD-- 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGGCC--
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECccccC--
Confidence 999999999999999999999999999999999999999864 69999999999999998889999999942
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc---CCCCCCCCh-hhHHHHHhh-CCCCCCCCCCC
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGP 274 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~---~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~ 274 (476)
+++.++.+.+++..+++.+++. ..+++++++||++|.|+.+... ....+||.+ ..|++.|.. ++.|.+..+.|
T Consensus 143 -~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p 220 (405)
T 2c78_A 143 -DPELLDLVEMEVRDLLNQYEFP-GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKP 220 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSC
T ss_pred -cHHHHHHHHHHHHHHHHHhccc-ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCC
Confidence 3556777788888899988874 1257899999999998643211 113678875 457776655 78888888899
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccce
Q 011836 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 275 ~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 349 (476)
++++|+++| +++|++++|+|.+|+|++||.|.+.|.+ ...+|++|++++.++++|.|||+|+++|+|++..++++
T Consensus 221 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~ 300 (405)
T 2c78_A 221 FLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300 (405)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCT
T ss_pred cEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCc
Confidence 999999998 5789999999999999999999999987 68999999999999999999999999999998899999
Q ss_pred eeEEecCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCC
Q 011836 350 GFVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 426 (476)
Q Consensus 350 G~vl~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~ 426 (476)
||+|++++ ++.+++.|+|++.|++.. .+.++..||++.+|+++.+++|+|. +. ..++++++|+
T Consensus 301 G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------------~~~~~l~~~~ 366 (405)
T 2c78_A 301 GQVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------------PGVEMVMPGD 366 (405)
T ss_dssp TCEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------TTCCCBCTTC
T ss_pred eEEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------------cCccccCCCC
Confidence 99999988 577899999999996532 1258999999999999999999988 31 1256799999
Q ss_pred EEEEEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcC
Q 011836 427 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 427 ~a~v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~ 470 (476)
.+.|+|+|.+|+|++.+ +||+||+.|+|+|+|+|+++.
T Consensus 367 ~~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 367 NVTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp EEEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEecc
Confidence 99999999999999987 699999999999999999875
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.3e-56 Score=491.30 Aligned_cols=381 Identities=29% Similarity=0.416 Sum_probs=311.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...++.++|+++||+|+|||||+++|+.... +.|+..+...+.+|..++|+++|+|++.....++
T Consensus 291 ~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~ 355 (1289)
T 3avx_A 291 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYD 355 (1289)
T ss_dssp CCCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEE
T ss_pred hccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEc
Confidence 3567789999999999999999999974321 1122222222367888999999999999988999
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+.++.++|+|||||.+|.++|.++++.+|++|||||+.+|.+ .|+++|+.++..+++|++||++||||+..
T Consensus 356 ~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDLv~-- 426 (1289)
T 3avx_A 356 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDMVD-- 426 (1289)
T ss_dssp CSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTTCC--
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc--
Confidence 999999999999999999999999999999999999999975 69999999999999998889999999943
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCCh-hhHHHHHhh-CCCCCCCCCCCceE
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRM 277 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~ 277 (476)
++++++.+.+++..+++.+++. ..+++++|+||++|.+- ..+||.| ..|++.|.. ++.|.+..+.|+++
T Consensus 427 -d~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~ 497 (1289)
T 3avx_A 427 -DEELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLL 497 (1289)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEE
T ss_pred -chhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceee
Confidence 3566777888899999988874 23579999999999642 1358766 456666654 77777778899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
+|+++| +++|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|
T Consensus 498 pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL 577 (1289)
T 3avx_A 498 PIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL 577 (1289)
T ss_dssp ECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEE
T ss_pred eccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEE
Confidence 999998 5889999999999999999999999987 789999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccEEEEEEEEcccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEE
Q 011836 354 SSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 430 (476)
Q Consensus 354 ~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v 430 (476)
++++. +.++..|+|++.|++.. .+.++..||.+.+|+++.+++|+|. |. ..+++|++|+.+.|
T Consensus 578 ~~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V 643 (1289)
T 3avx_A 578 AKPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKM 643 (1289)
T ss_dssp ESTTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEE
T ss_pred ecCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEE
Confidence 99875 57789999999996532 1257999999999999999999987 21 22567999999999
Q ss_pred EEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCCC
Q 011836 431 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 473 (476)
Q Consensus 431 ~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~~ 473 (476)
+|+|.+|+|++.+ +||+||+.|+|+|+|+|+++.+..
T Consensus 644 ~L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 644 VVTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 9999999999986 699999999999999999987654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=7.2e-58 Score=475.96 Aligned_cols=371 Identities=23% Similarity=0.386 Sum_probs=303.2
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
....++.++|+++||+|+|||||+++|+... ..+.+|...+|+++|+|++..+..+
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~ 68 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAF 68 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEE
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEE
Confidence 3445678999999999999999999995211 1235677788899999999999999
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
+++++.++|+|||||.+|.+++.++++.+|++|||||+.+|.. +|+++|+.++..+++|. |+++||+|+.
T Consensus 69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip~-IvviNK~Dl~-- 138 (482)
T 1wb1_A 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIPI-IVVITKSDNA-- 138 (482)
T ss_dssp EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCB-CEEEECTTSS--
T ss_pred EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCCE-EEEEECCCcc--
Confidence 9999999999999999999999999999999999999999864 79999999999999995 8999999993
Q ss_pred CchHHHHHHHHHHHHHHHHhc-CCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceE
Q 011836 199 NWSKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 277 (476)
++++++++.+++..+++.. ++. +++++|+||++|.|+.++.+. |.+.+. ++...++.+.|+++
T Consensus 139 --~~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~----------L~~~i~-~~~~~~~~~~~~~~ 202 (482)
T 1wb1_A 139 --GTEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELKNL----------IITTLN-NAEIIRNTESYFKM 202 (482)
T ss_dssp --CHHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHHHH----------HHHHHH-HSCCCCCSSSCCBC
T ss_pred --cchhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHHHH----------HHHhhc-Cccccccccccccc
Confidence 2556778888888888877 664 578999999999999885321 222222 23235667789999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEE-e
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-S 354 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl-~ 354 (476)
+++++| ++.|+|++|+|.+|.|++||.|.+.|.+..++|++|+++++++++|.|||+|++++.|++..++++||+| +
T Consensus 203 ~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~ 282 (482)
T 1wb1_A 203 PLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTS 282 (482)
T ss_dssp BCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCC
T ss_pred cceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEec
Confidence 999999 5789999999999999999999999999999999999999999999999999999999988899999999 5
Q ss_pred cCCCCcccccEEEEEEEEccccccccccCCcEEEEEEEeEEEEEEEEEEE-EEeecCCCccccccceeecCCCEEEEEEE
Q 011836 355 SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVVCRIQ 433 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~-~~~d~~~~~~~~~~~~~l~~g~~a~v~~~ 433 (476)
.++ ++++++.|+|++.|++. ...++..||++.+|+++.+++|+|..+. +++|.+++.. .+++|++|+.+.|+|+
T Consensus 283 ~~~-~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~ 357 (482)
T 1wb1_A 283 KDT-KLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFE 357 (482)
T ss_dssp TTC-CCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEE
T ss_pred CCC-CCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEE
Confidence 554 67788999999999542 1268999999999999999999999998 7888877532 2567999999999999
Q ss_pred EcceEEeeeccCccccceEEEEe---C---CcEEEEEEEEEcC
Q 011836 434 VNNSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELP 470 (476)
Q Consensus 434 ~~~pi~~~~~~~~~~lgrfilr~---~---~~tvg~G~V~~~~ 470 (476)
|.+|+|++.+ +||+||+ + ++|+|+|+|+++.
T Consensus 358 ~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~ 394 (482)
T 1wb1_A 358 LEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFK 394 (482)
T ss_dssp EEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECC
T ss_pred cCccEEecCC------CeEEEEECCCCccCceEeeEEEEEecc
Confidence 9999999865 7999998 4 8999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.9e-54 Score=435.34 Aligned_cols=335 Identities=20% Similarity=0.291 Sum_probs=284.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++||+|+|||||+++|+ ++|+|++..+..+++.+++++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999983 478999999999999999999
Q ss_pred EEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCchHHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 205 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~~ 205 (476)
|+|||||.+|.+++.++++.+|++||||| ..|.+ +|+++|+.++..+++|++|+++| |||+ . .+.+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~----~~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-H----MHAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-C----HHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-C----HHHH
Confidence 99999999999999999999999999999 88864 79999999999999996589999 9998 3 2345
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEE--eeccc---CccccccccCCCCCCCChhhHHHHHhhCCCCCCC-CCCCceEEE
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 279 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iip--iSa~~---g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~~~~~~i 279 (476)
+++.+++..+++..++. .++++| +||++ |.|+.++.+. |.+.++....+... ...|+++++
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 66677888888777653 579999 99999 8888875332 33333322111112 345688999
Q ss_pred EEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceeeEEecCC
Q 011836 280 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 280 ~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
.++|+ +.|++++|+|.+|+|++||+|++.|.+..++|++|+++++++++|.|||+|+++|+|++..++++||+|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99995 78999999999999999999999999999999999999999999999999999999998899999999998
Q ss_pred CCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011836 358 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
.+ ..++.|+|++.|+ .+ .++..||++.+|+++.+++|+|..|.. |.+ ++ +.+++|+.+.|+|+|.+
T Consensus 276 ~~-~~~~~f~a~v~~l---~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~ 342 (370)
T 2elf_A 276 KE-IVTTDYTLECTVS---KFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNK 342 (370)
T ss_dssp CC-EEEEEEEEEEEEC---TTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEEE---CCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECc
Confidence 45 8899999999994 44 789999999999999999999998853 322 11 23568999999999999
Q ss_pred eEEeeeccCccccceEEEEeCC---cEEEEEEEE
Q 011836 437 SICTEKFADFAQLGRFTLRTEG---KTVAVGKVT 467 (476)
Q Consensus 437 pi~~~~~~~~~~lgrfilr~~~---~tvg~G~V~ 467 (476)
|+|++.|. ||+||+.+ +|+|+|.|.
T Consensus 343 pi~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 343 KLAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred EEEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 99999985 99999965 699999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=1e-52 Score=430.25 Aligned_cols=344 Identities=24% Similarity=0.393 Sum_probs=285.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|||||||+++|+ |. ..|...+|+++|+|++..+..+.+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~ 57 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALT---GV-------------------------WTDTHSEELRRGITIKIGFADAEI 57 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHH---TC-------------------------CCC--CGGGGSCSSSCCEEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHh---CC-------------------------ccccChhhhcCCcEEEEeeeeeec
Confidence 34678999999999999999999994 21 134457788899999887665443
Q ss_pred C-----------------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH
Q 011836 121 E-----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 121 ~-----------------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
. .+.++|+|||||.+|.+++.+++..+|++||||||.++.. .+||++|+..
T Consensus 58 ~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~ 131 (410)
T 1kk1_A 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMA 131 (410)
T ss_dssp EECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHH
T ss_pred ccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHH
Confidence 1 2789999999999999999999999999999999998851 2799999999
Q ss_pred HHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhH
Q 011836 178 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 257 (476)
Q Consensus 178 ~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L 257 (476)
+..++++++|+++||||+... +...+..+++..+++.... .+++++++||++|.|+.+ |
T Consensus 132 ~~~~~~~~iivviNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L 190 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVDK----EKALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------L 190 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSCH----HHHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------H
T ss_pred HHHcCCCcEEEEEECccCCCH----HHHHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------H
Confidence 999998779999999999432 2233444556666665432 257999999999999987 5
Q ss_pred HHHHh-hCCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCCc------------eE
Q 011836 258 FEALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QV 314 (476)
Q Consensus 258 ~~~l~-~l~~~~~~~~~~~~~~i~~~~~----------~~G~v~~G~v~sG~l~~g~~v~~~p~~~------------~~ 314 (476)
++.|. .++.|.++.+.|++++|.++|+ .+|++++|+|.+|+|++||.|.+.|++. ..
T Consensus 191 ~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~ 270 (410)
T 1kk1_A 191 VKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITT 270 (410)
T ss_dssp HHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCcccccccccccccee
Confidence 55555 4788878888999999999983 2688999999999999999999999752 68
Q ss_pred EEEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEccccc-------cccccCC
Q 011836 315 KVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAG 384 (476)
Q Consensus 315 ~V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~-------~~~i~~G 384 (476)
+|++|++++.++++|.|||+|++.++ +++..++.+||+|++++.+++.++.|+|++.|++... ..++..|
T Consensus 271 ~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g 350 (410)
T 1kk1_A 271 EIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRK 350 (410)
T ss_dssp EEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTT
T ss_pred EEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCC
Confidence 99999999999999999999999886 5666789999999999988888999999999965320 2679999
Q ss_pred cEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccceEEEEe----CCcE
Q 011836 385 YKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKT 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lgrfilr~----~~~t 460 (476)
|++.+|+++.+++|+|..+. ++ .|+|+|.+|+|++.+ .||+||+ .++|
T Consensus 351 ~~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~ 402 (410)
T 1kk1_A 351 EVLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRL 402 (410)
T ss_dssp CEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEEETTEEEE
T ss_pred CEEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEecCC------CEEEEEEecCCCcEE
Confidence 99999999999999999753 12 688899999999987 4999998 6899
Q ss_pred EEEEEEE
Q 011836 461 VAVGKVT 467 (476)
Q Consensus 461 vg~G~V~ 467 (476)
+|+|.|+
T Consensus 403 ig~G~i~ 409 (410)
T 1kk1_A 403 IGYGIIK 409 (410)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=7.5e-53 Score=430.91 Aligned_cols=343 Identities=25% Similarity=0.418 Sum_probs=274.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.++.++|+++||+|||||||+++|+ |. .++...+|+++|+|++..+..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALT---GV-------------------------WTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHH---SC-------------------------CCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHh---CC-------------------------ccccCcccccCCcEEEecccccccc
Confidence 4567999999999999999999984 21 134456778899999887654332
Q ss_pred --------------C--------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH
Q 011836 121 --------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 178 (476)
Q Consensus 121 --------------~--------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~ 178 (476)
. .+.++|+|||||.+|.++|.++++.+|++|||+|++++.. .+||++|+..+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHH
Confidence 1 2789999999999999999999999999999999998851 27999999999
Q ss_pred HHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHH
Q 011836 179 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 258 (476)
Q Consensus 179 ~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~ 258 (476)
..++++++||++||+|+...++.++.++ ++..+++.... .+++++|+||++|.|+.+ |+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~----~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 189 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYE----QIKEFVKGTIA---ENAPIIPISAHHEANIDV--------------LL 189 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHH----HHHHHHTTSTT---TTCCEEEC------CHHH--------------HH
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHH----HHHHHHhhcCC---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 9999877999999999965443233333 44455654432 257899999999999987 55
Q ss_pred HHHh-hCCCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCCc------------eEE
Q 011836 259 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 315 (476)
Q Consensus 259 ~~l~-~l~~~~~~~~~~~~~~i~~~~~----------~~G~v~~G~v~sG~l~~g~~v~~~p~~~------------~~~ 315 (476)
+.|. .++.|.++.+.|++++|.++|+ .+|+|++|+|.+|+|++||.|.+.|+.. ..+
T Consensus 190 ~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 269 (408)
T 1s0u_A 190 KAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269 (408)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeE
Confidence 5555 4788888888999999999983 2688999999999999999999999742 689
Q ss_pred EEEEEECCeeeeeeCCCCeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEcccc-------ccccccCCc
Q 011836 316 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGY 385 (476)
Q Consensus 316 V~si~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~ 385 (476)
|++|+++++++++|.|||+|++++. +++..++++||+|+.++.+++.++.|+|++.|++.. ...++..||
T Consensus 270 v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 349 (408)
T 1s0u_A 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349 (408)
T ss_dssp CCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCC
Confidence 9999999999999999999999986 677789999999999998888899999999996532 026799999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccceEEEEe----CCcEE
Q 011836 386 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 461 (476)
Q Consensus 386 ~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lgrfilr~----~~~tv 461 (476)
++.+|+++.+++|+|..+. ++ .|+++|.+|+|++.+ .||+||+ .++|+
T Consensus 350 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~i 401 (408)
T 1s0u_A 350 VLMLNIGTATTAGVITSAR--------------------GD--IADIKLKLPICAEIG------DRVAISRRVGSRWRLI 401 (408)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCEEEEEEEEec--------------------CC--EEEEEECCcEEecCC------CEEEEEEecCCCeEEE
Confidence 9999999999999999753 12 688889999999988 4999999 58999
Q ss_pred EEEEEE
Q 011836 462 AVGKVT 467 (476)
Q Consensus 462 g~G~V~ 467 (476)
|+|.|+
T Consensus 402 g~G~i~ 407 (408)
T 1s0u_A 402 GYGTIE 407 (408)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.4e-49 Score=405.97 Aligned_cols=356 Identities=22% Similarity=0.292 Sum_probs=278.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE--
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-- 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~-- 118 (476)
..++.++|+++||+|+|||||+++|+..... . ..|. ...........+..++++.+.....+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~---~----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTS---K----------KLGY---AETNIGVCESCKKPEAYVTEPSCKSCGS 67 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCC---S----------SSEE---EEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccc---c----------ccCc---cccceeeccccccccceecccccccccc
Confidence 3456789999999999999999999531110 0 0000 00000000111122333332211111
Q ss_pred ---EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 119 ---ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 119 ---~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
....+.++|+|||||.+|.+++..+++.+|++|||+|+.++.. ..|+++|+..+..++++++|+|+||+|+
T Consensus 68 ~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp CSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 1223789999999999999999999999999999999999852 2799999999999998669999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHh-hCCCCCCCCCCC
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD-RIEITPRDPNGP 274 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~-~l~~~~~~~~~~ 274 (476)
.. .+...+..+++..+++..+.. +++++++||++|.|+.+ |++.|. .++.+.++.+.|
T Consensus 142 ~~----~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~ 200 (403)
T 3sjy_A 142 VS----KEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQK 200 (403)
T ss_dssp SC----HHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSC
T ss_pred cc----hHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCC
Confidence 43 234445566677777666543 67999999999999987 555555 478888888899
Q ss_pred ceEEEEEEEc--c--------CCeEEEEEEEeeeecCCCEEEEecCCc------------eEEEEEEEECCeeeeeeCCC
Q 011836 275 FRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPG 332 (476)
Q Consensus 275 ~~~~i~~~~~--~--------~G~v~~G~v~sG~l~~g~~v~~~p~~~------------~~~V~si~~~~~~v~~a~aG 332 (476)
++++|.++|. + +|+|++|+|.+|+|++||+|.+.|++. ..+|++|+++++++++|.||
T Consensus 201 ~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G 280 (403)
T 3sjy_A 201 PVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPG 280 (403)
T ss_dssp CEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSS
T ss_pred cEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCC
Confidence 9999999883 3 789999999999999999999999875 58999999999999999999
Q ss_pred CeEEEEec---cCCccccceeeEEecCCCCcccccEEEEEEEEcccc-------ccccccCCcEEEEEEEeEEEEEEEEE
Q 011836 333 ENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVE 402 (476)
Q Consensus 333 ~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~~~~~~~~~~~~~~~i~~ 402 (476)
|+|+++|. +++..++++||||++++.+|+.++.|+|++.||+.. ...++..|+++.+|+++.++.|+|..
T Consensus 281 ~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~ 360 (403)
T 3sjy_A 281 GLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTS 360 (403)
T ss_dssp SCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEE
T ss_pred CEEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEE
Confidence 99999986 667789999999999998888899999999997532 14689999999999999999999996
Q ss_pred EEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeeeccCccccc-eEEE-EeCC---cEEEEEEEE
Q 011836 403 LLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KTVAVGKVT 467 (476)
Q Consensus 403 i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~~~~~~~~~lg-rfil-r~~~---~tvg~G~V~ 467 (476)
+. ++ .++++|.+|+|++.. . ||+| |+.+ |++|+|.|+
T Consensus 361 ~~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 361 VK--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EC--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred ec--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 52 11 588999999999876 5 8998 5444 899999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=9.5e-42 Score=314.12 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.7
Q ss_pred CCCCceEEEEEEEccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 271 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 271 ~~~~~~~~i~~~~~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
.++||||+|+++|++.|++++|+|.+|+|++||.|.+.|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEcccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEE
Q 011836 351 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 351 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
|+|++++++|+.++.|+|++.| +++ .++..||++.+|+|+.+++|+|..|.+++|.+|++..+.+|++|++|+.+.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999888899999999999 455 579999999999999999999999999999999998888999999999999
Q ss_pred EEEEEcceEEeeeccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011836 430 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 430 v~~~~~~pi~~~~~~~~~~lgrfilr~~~~tvg~G~V~~~~~~ 472 (476)
|+|++.+|+|+|.|.+++.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998865
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.7e-39 Score=340.16 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=207.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.+||+|+||+|||||||+.+||+.+|.+...+.-. .|. .....+||+.+.|++|||||..+...+.|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~-------~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~ 98 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVK-------ARK--AARHATSDWMAMERERGISVTTSVMQFPYR 98 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHH-------HC----------------------CTTTEEEEEET
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceee-------cCc--cccccccCChHHHHHCCCcEeeceEEEEEC
Confidence 34679999999999999999999999999987644211 110 112357999999999999999999999999
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
++.|+|||||||.||..++.++++.+|+||+||||.+|+. +||+..|+++..+++| .|++|||||++++++
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~- 169 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALHP- 169 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCCH-
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcch-
Confidence 9999999999999999999999999999999999999984 8999999999999999 778999999987763
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Q 011836 202 KERYDEIESKMTPFLKAS-------------------------------------------------------------- 219 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~-------------------------------------------------------------- 219 (476)
.++.+++...|...
T Consensus 170 ----~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
T 3vqt_A 170 ----LDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR 245 (548)
T ss_dssp ----HHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH
T ss_pred ----hHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 23333443333100
Q ss_pred ---------CC-------CccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC---------CCCCC
Q 011836 220 ---------GY-------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGP 274 (476)
Q Consensus 220 ---------g~-------~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~---------~~~~~ 274 (476)
+. ....-+|+++.||+++.|+..+ |..+++.+|.|.. +.+.|
T Consensus 246 ~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p 312 (548)
T 3vqt_A 246 MDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEA 312 (548)
T ss_dssp HHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSS
T ss_pred hHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcC
Confidence 00 0012357888899999999874 3346677887753 23578
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcc
Q 011836 275 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~i~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~ 345 (476)
|...+..++. ..|++.++||+||+|+.|+.|+....++..+|..+..+ +.++++|.|||+|++ .|++
T Consensus 313 ~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl~-- 388 (548)
T 3vqt_A 313 FTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNHG-- 388 (548)
T ss_dssp CEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECSS--
T ss_pred ceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--cCCc--
Confidence 8888887763 47999999999999999999999988999999988875 468999999999985 6664
Q ss_pred ccceeeEEecCCCC
Q 011836 346 DILSGFVLSSVAKP 359 (476)
Q Consensus 346 ~i~~G~vl~~~~~~ 359 (476)
+++.||+|++.+.+
T Consensus 389 ~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 389 TIKIGDTFTESKEV 402 (548)
T ss_dssp CCCTTCEEESSSSC
T ss_pred cCccCCEecCCCCc
Confidence 58999999987643
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.7e-37 Score=325.95 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=204.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
+..+||+++||+|||||||+++|++.+|.++.+.+ ..+++|+.+.|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 46799999999999999999999998888765431 2567899999999999999887777664
Q ss_pred ----CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCC
Q 011836 122 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ----~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 197 (476)
.+.++|||||||.+|..++.++++.+|++|||||+.+|.. .|+.+++..+...++| +|+|+||+|++.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999963 7999999999999999 899999999965
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceE
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 277 (476)
++ .++..+++... +++. ..+++++||++|.|+.++ |..+++.++.|..+.+.|+++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 43 22333444333 3443 235899999999999884 444667788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccC-Cccccceee
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 351 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~ 351 (476)
.|.+++ +..|++++|+|.+|+|++||.|++.|.+...+|++|..+ +.+++++.|||++.+. .|+ +..++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 999877 467999999999999999999999999999999999875 4689999999987764 555 346799999
Q ss_pred EEecCCCC
Q 011836 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
+|+.++++
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.7e-36 Score=317.94 Aligned_cols=267 Identities=22% Similarity=0.357 Sum_probs=199.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
..+||+++||+|||||||+++|++.+|.++.+.+ ..+++|..+.|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 5799999999999999999999998888765431 2567888999999999999888877665
Q ss_pred ---CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ---~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|.. .|+.+++..+...++| +|+|+||+|++.+
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~a 138 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPAA 138 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTTC
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCcccc
Confidence 3789999999999999999999999999999999999964 7999999999999998 8899999999654
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEE
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 278 (476)
+ .++..+++... +++. ..+++++||++|.|+.++ |..++..++.|..+.+.|+++.
T Consensus 139 ~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~al 194 (599)
T 3cb4_D 139 D-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQAL 194 (599)
T ss_dssp C-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEEE
T ss_pred c-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCceee
Confidence 3 23334444333 3443 235899999999999884 3445677888888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC---CeeeeeeCCCCeEEEEeccC-CccccceeeE
Q 011836 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGFV 352 (476)
Q Consensus 279 i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~v 352 (476)
|.+++ +..|.+++|+|.+|+|+.||++.+.+.+...+|.+|..+ +.+++++.|||++.+ +.|+ +..++++||+
T Consensus 195 I~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDt 273 (599)
T 3cb4_D 195 IIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDT 273 (599)
T ss_dssp EEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCE
T ss_pred eeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCE
Confidence 99987 568999999999999999999999999999999999875 467899999997776 4455 3467999999
Q ss_pred EecCCCC
Q 011836 353 LSSVAKP 359 (476)
Q Consensus 353 l~~~~~~ 359 (476)
|++++++
T Consensus 274 l~~~~~~ 280 (599)
T 3cb4_D 274 LTLARNP 280 (599)
T ss_dssp EEESSSC
T ss_pred eeecCCc
Confidence 9987754
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-36 Score=329.17 Aligned_cols=274 Identities=24% Similarity=0.275 Sum_probs=199.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
.+.+||+|+||+|||||||+.+||+.+|.+...+- . + ....+||+.+.|++|||||..+...+.|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~------v-~------~~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGE------V-H------DGAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCce------e-c------CCCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 56899999999999999999999998886543210 0 0 12457999999999999999999998874
Q ss_pred ------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
++.++|||||||.||..++.++++.+|+||+||||.+|+. .||+..|+++...++| .|++|||||+
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 5899999999999999999999999999999999999985 8999999999999999 7899999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhc--------------------------------------------------------
Q 011836 196 HTVNWSKERYDEIESKMTPFLKAS-------------------------------------------------------- 219 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~-------------------------------------------------------- 219 (476)
+.+++. ...+++...+...
T Consensus 150 ~~a~~~-----~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 224 (709)
T 4fn5_A 150 QGANFL-----RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSS 224 (709)
T ss_dssp TTCCHH-----HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cCccHH-----HHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHH
Confidence 776532 2222222222100
Q ss_pred --------------------CC-------------CccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCC
Q 011836 220 --------------------GY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 266 (476)
Q Consensus 220 --------------------g~-------------~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~ 266 (476)
.+ ....-.|++..||+++.|+..+ |..+++.+|.
T Consensus 225 ~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPs 291 (709)
T 4fn5_A 225 MVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPA 291 (709)
T ss_dssp HHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCC
T ss_pred HHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCCC
Confidence 00 0012346777788888777663 3345667777
Q ss_pred CC--------------------CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC--
Q 011836 267 TP--------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-- 322 (476)
Q Consensus 267 ~~--------------------~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-- 322 (476)
|. .+.+.|+.+.|.++. +..|.++++||+||+|++||+|+....++..+|..+...
T Consensus 292 P~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g 371 (709)
T 4fn5_A 292 PTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHA 371 (709)
T ss_dssp TTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCS
T ss_pred CcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeec
Confidence 63 345789999999877 457999999999999999999998877777888888764
Q ss_pred --CeeeeeeCCCCeEEEEeccCCccccceeeEEecCCCC
Q 011836 323 --DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 323 --~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
..++++|.||++|+ +.|++ ++..|++|++.+.+
T Consensus 372 ~~~~~v~~~~aGdIv~--i~Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 372 NQREEIKEVRAGDIAA--LIGMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp SCCCEESEECTTCEEE--ECSCS--SCCTTCEEECSSSC
T ss_pred ceeeEeeeecCCCeee--ecCCC--cCccCCEecCCCcc
Confidence 57899999999999 47774 48999999987643
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=2.3e-38 Score=339.62 Aligned_cols=274 Identities=22% Similarity=0.303 Sum_probs=214.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+++||+|+||+|||||||+++||+.+|.++..+ +. -....+||+.+.|++||+||..+...+.|+++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------SV-DKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------SC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 468999999999999999999999999987642 10 01245799999999999999999999999999
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.|+|||||||.||..++.++++.+|+||+||||.+|+. +||+.+|.++..+++| .|++|||||++.+++..
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~- 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLST- 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHH-
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHHH-
Confidence 99999999999999999999999999999999999984 8999999999999999 67899999998776432
Q ss_pred HHHHHHHHH--------------------------------------HHHHHhcCC-------------CccCCeeEEEe
Q 011836 204 RYDEIESKM--------------------------------------TPFLKASGY-------------NVKKDVQFLPI 232 (476)
Q Consensus 204 ~~~~~~~~l--------------------------------------~~~l~~~g~-------------~~~~~~~iipi 232 (476)
.++++.+.+ ..++..-.+ ....-.|+++.
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 222222111 001100000 00113578888
Q ss_pred ecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC
Q 011836 233 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 310 (476)
Q Consensus 233 Sa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~ 310 (476)
||+++.|+..+ |..+++.+|.|..+.+.|+...|.+++ +..|+++++||+||+|+.||.|++...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999998873 333556788888888889999988876 467999999999999999999987655
Q ss_pred CceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 311 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 311 ~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
+ ..+|..+... ..++++|.||++|++ .| ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3566666543 467899999999885 43 35678888887653
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4e-34 Score=299.36 Aligned_cols=280 Identities=19% Similarity=0.216 Sum_probs=214.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+|+||+|+|||||+++|++..|.+...+... . ++ ......+|+.+.|+.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~------~-~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK------S-RK--AARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH------T-C------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee------c-cc--cccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 3578999999999999999999999888875433111 0 00 0012345666788899999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++..++..+...++| +++|+||+|+...+ ..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~-~~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLMEVCRLRHTP-IMTFINKMDRDTRP-SI 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHHTTTCC-EEEEEECTTSCCSC-HH
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCcccc-HH
Confidence 999999999999999999999999999999999999863 6899999999999999 88999999996554 22
Q ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 219 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~--------------------------------------------------------------- 219 (476)
+.++++.+.+.......
T Consensus 153 ~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l 232 (528)
T 3tr5_A 153 ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIEL 232 (528)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcch
Confidence 22333322221000000
Q ss_pred -----------CCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCC---------CCCCceEEE
Q 011836 220 -----------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMPI 279 (476)
Q Consensus 220 -----------g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~~~~~~i 279 (476)
.+.....+|++++||++|.|+.++ |..+++.+|.|... .+.|+...|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L-------------ld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~V 299 (528)
T 3tr5_A 233 VKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL-------------LDAFVKEAPPPQGRETNSRLVKPEEEKFSGFV 299 (528)
T ss_dssp HHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEE
T ss_pred hhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH-------------HHHHHHhCCCCCcccccceeeCCCcccceeEE
Confidence 000012348899999999999984 33355667766432 247888888
Q ss_pred EEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCcccccee
Q 011836 280 IDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 280 ~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 350 (476)
+++.. .+|+++++||.||+|++||.|++.+.++..+|.+++.+ +.++++|.|||+|++ .++ .+++.|
T Consensus 300 FKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~l--~~~~~G 375 (528)
T 3tr5_A 300 FKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HNH--GTIQIG 375 (528)
T ss_dssp EEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EES--SSCCTT
T ss_pred EEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cCC--CCCccC
Confidence 88752 67999999999999999999999999999999999764 678999999999985 555 358899
Q ss_pred eEEecCC
Q 011836 351 FVLSSVA 357 (476)
Q Consensus 351 ~vl~~~~ 357 (476)
|+|++.+
T Consensus 376 Dtl~~~~ 382 (528)
T 3tr5_A 376 DTFTQGE 382 (528)
T ss_dssp CEEESSC
T ss_pred CEEcCCC
Confidence 9999753
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=6.1e-33 Score=300.22 Aligned_cols=274 Identities=23% Similarity=0.260 Sum_probs=216.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.+||+|+||+|||||||+++|++.+|.+...+ .. +. ...++|+.+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g------~v-~~------g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG------EV-HD------GAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc------cc-CC------CceeecChhhHHhcCceeeeceEEEEEC
Confidence 45679999999999999999999998887665432 00 01 1467888899999999999988888888
Q ss_pred C-------eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 122 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~-------~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
+ +.++|||||||.+|...+.++++.+|++|+|+|+.++.. .|+.+++..+...++| +++++||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 999999999999999999999999999999999999863 6899999999999999 788999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcC--------------------------CC--------------------------
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASG--------------------------YN-------------------------- 222 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g--------------------------~~-------------------------- 222 (476)
+..++ ++++.++++..+.... |.
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 96543 3333444433322100 00
Q ss_pred -------------------------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCC
Q 011836 223 -------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 265 (476)
Q Consensus 223 -------------------------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~ 265 (476)
....+|+++.||+++.|+..+ |..+++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAM-------------LDAVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHH-------------HHHHHHHCC
Confidence 001257888888888888764 333455666
Q ss_pred CCCC--------------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-
Q 011836 266 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 322 (476)
Q Consensus 266 ~~~~--------------------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~- 322 (476)
.|.. +.+.|+.+.|++++ +..|++++|||+||+|+.||+|+..+.++..+|.+|..+
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 6532 24678999999988 468999999999999999999999998888999999864
Q ss_pred ---CeeeeeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 323 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 323 ---~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
+.++++|.||++|++ .|++ ++++||+|++.+.
T Consensus 368 g~~~~~v~~~~aGdIv~i--~gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAA--IGLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEE--eCcc--cCccCCEEeCCCc
Confidence 578999999999997 4764 4799999998664
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.5e-33 Score=291.70 Aligned_cols=275 Identities=18% Similarity=0.215 Sum_probs=187.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++||+|||||||+++|++..+.+....... .+ . .....++|+.+.|+.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~-~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK-------GR-G-SNQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee-------cC-c-cccceeeccchhcccCCcceeeeEEEEEECC
Confidence 4579999999999999999999997767654322100 00 0 0012357778889999999999999999999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|+|+|+.++.. .|+++++..+...++| +++++||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~ 152 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-M 152 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-H
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-H
Confidence 999999999999999999999999999999999999863 6899999999889999 899999999965532 2
Q ss_pred HHHHHHHHHHHHHHHhcCCC------------------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLKASGYN------------------------------------------------------------ 222 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~------------------------------------------------------------ 222 (476)
++.+++...+......
T Consensus 153 ----~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~ 228 (529)
T 2h5e_A 153 ----ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLR 228 (529)
T ss_dssp ----HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhh
Confidence 2333333333210000
Q ss_pred -------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHH-HhhCCCCCCC---------CCC
Q 011836 223 -------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEA-LDRIEITPRD---------PNG 273 (476)
Q Consensus 223 -------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~-l~~l~~~~~~---------~~~ 273 (476)
....+|+++.||+++.|+.. |++. ++.+|.|... .+.
T Consensus 229 e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~ 294 (529)
T 2h5e_A 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASED 294 (529)
T ss_dssp HHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCC
T ss_pred cccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCC
Confidence 00112444444444444443 5554 4456666432 146
Q ss_pred CceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCc
Q 011836 274 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 344 (476)
Q Consensus 274 ~~~~~i~~~~~-----~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~ 344 (476)
||...|.++.. .+|++++|||.||+|++||.|++.+.++..+|.+|+.+ +.++++|.|||+|++ .++
T Consensus 295 ~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 370 (529)
T 2h5e_A 295 KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH-- 370 (529)
T ss_dssp SCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--
T ss_pred CeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--
Confidence 88888888742 47999999999999999999999999999999999975 678999999999985 555
Q ss_pred cccceeeEEecCC
Q 011836 345 EDILSGFVLSSVA 357 (476)
Q Consensus 345 ~~i~~G~vl~~~~ 357 (476)
.+++.||+|++++
T Consensus 371 ~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 371 GTIQIGDTFTQGE 383 (529)
T ss_dssp SCCCTTCEEESSC
T ss_pred CCCccCCEeecCC
Confidence 4588999999876
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=6.5e-32 Score=291.90 Aligned_cols=276 Identities=23% Similarity=0.270 Sum_probs=200.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|||||||+++|++.+|.+...+. . + ....++|+.+.|+++|+|+......+.+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~------v-~------~~~~~~d~~~~E~~~giTi~~~~~~~~~ 74 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE------V-H------EGAATMDFMEQERERGITITAAVTTCFW 74 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEE
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce------e-c------CCceeccCchhhhhcccccccceEEEEE
Confidence 3456899999999999999999999988877654320 0 0 1145678889999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.++|||||||.+|...+.++++.+|++|+|+|+.++.. .++.+++..+...++| +++++||+|+..++
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~- 145 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD- 145 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC-
Confidence 99999999999999999999999999999999999999863 6889999999999999 88999999996543
Q ss_pred hHHHHHHHHHHHHHHHHhc--------------------------------C----------------------------
Q 011836 201 SKERYDEIESKMTPFLKAS--------------------------------G---------------------------- 220 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~--------------------------------g---------------------------- 220 (476)
++++.+++...+... |
T Consensus 146 ----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~ 221 (691)
T 1dar_A 146 ----LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAA 221 (691)
T ss_dssp ----HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 223333333332110 0
Q ss_pred ---------------C-------------CccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC---
Q 011836 221 ---------------Y-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 269 (476)
Q Consensus 221 ---------------~-------------~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~--- 269 (476)
+ .....+|+++.||++|.|+..+ |..+++.+|.|..
T Consensus 222 e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~ 288 (691)
T 1dar_A 222 DFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-------------LDAVVDYLPSPLDIPP 288 (691)
T ss_dssp TTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-------------HHHHHHHSCCTTTSCC
T ss_pred hCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-------------HHHHHHhCCChhhccc
Confidence 0 0001257888899999888774 3345566777754
Q ss_pred ---------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011836 270 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 270 ---------------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
+.+.|+.+.|.+++ +..|+++++||+||+|+.||+|+..+.++..+|..|... +.++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~ 368 (691)
T 1dar_A 289 IKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 368 (691)
T ss_dssp EEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESE
T ss_pred ccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcce
Confidence 25679999999988 468999999999999999999999888888999999764 568999
Q ss_pred eCCCCeEEEEeccCCccccceeeEEecCCCC
Q 011836 329 AGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 329 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
|.||++|++ .|++ +++.||+|++.+.+
T Consensus 369 ~~aGdI~~i--~gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 369 LKAGDLGAV--VGLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp EETTCEEEE--ECCS--SCCTTCEEEETTCC
T ss_pred ecCCCEEEE--eCcc--cCccCCEEecCCCc
Confidence 999999996 4764 47889999987654
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=2.9e-31 Score=286.88 Aligned_cols=275 Identities=23% Similarity=0.261 Sum_probs=199.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++||+|+|||||+++|++..+.+....- . . .....+|+.+.|+++|+|+......+.+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~------v-~------~~~~~~D~~~~e~~~giTi~~~~~~~~~ 72 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE------T-H------EGASQMDWMEQEQDRGITITSAATTAAW 72 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc------c-c------CCceecccchhhhhcCceEeeeeEEEEE
Confidence 3456799999999999999999999988777654220 0 0 0135678888999999999999999999
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 200 (476)
.++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++..++..+...++| +++|+||+|+...+
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~- 143 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN- 143 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc-
Confidence 99999999999999999999999999999999999999863 6888999989989999 88999999996543
Q ss_pred hHHHHHHHHHHHHHHHHhcC--------------------------CC--------------------------------
Q 011836 201 SKERYDEIESKMTPFLKASG--------------------------YN-------------------------------- 222 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g--------------------------~~-------------------------------- 222 (476)
+.++.++++..+.... |.
T Consensus 144 ----~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~ 219 (693)
T 2xex_A 144 ----FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVA 219 (693)
T ss_dssp ----HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 2333444444332100 00
Q ss_pred ------------------------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCC---
Q 011836 223 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 269 (476)
Q Consensus 223 ------------------------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~--- 269 (476)
....+|+++.||+++.|+..+ |..+++.+|.|..
T Consensus 220 e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~ 286 (693)
T 2xex_A 220 ETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-------------LDAVIDYLPSPLDVKP 286 (693)
T ss_dssp TTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCGGGSCC
T ss_pred hCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-------------HHHHHHHCCCchhccc
Confidence 001246677777777776653 3335566777643
Q ss_pred -----------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----Ceee
Q 011836 270 -----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 326 (476)
Q Consensus 270 -----------------~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v 326 (476)
+.+.|+.+.|++++ +..|+++++||+||+|+.||+|+....++..+|.+|..+ +.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 366 (693)
T 2xex_A 287 IIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366 (693)
T ss_dssp EEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEEC
T ss_pred ccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEc
Confidence 25679999999988 467999999999999999999999888888999999765 4689
Q ss_pred eeeCCCCeEEEEeccCCccccceeeEEecCCC
Q 011836 327 RHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 327 ~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 358 (476)
++|.|||+|++ .|++ +++.||+|++.+.
T Consensus 367 ~~~~aGdI~~i--~gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 367 DTVYSGDIAAA--VGLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp SEEETTCEEEE--ESCS--SCCTTCEEEETTC
T ss_pred cccCcCCEEEE--eCcc--cCccCCEEecCCC
Confidence 99999999996 4764 4788999998664
No 28
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.98 E-value=3.7e-34 Score=298.35 Aligned_cols=252 Identities=26% Similarity=0.370 Sum_probs=196.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 122 (476)
+.++|+++||+|+|||||+++|+...- .....+|+|.+.....+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 357899999999999999999963210 1112467888887777766 56
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
..++|||||||.+|..++.++++.+|++|||+|+.++.+ +|+.+++..+...++| +||++||+|+++.++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 789999999999999999999999999999999999875 7999999999999999 89999999996544221
Q ss_pred HHHHHHHHHHHHH---HHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEE
Q 011836 203 ERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~---l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 279 (476)
....+..+ +..+ ..+++++|+||++|.|+.++++. +...+. .+.+..+++.|++++|
T Consensus 124 -----v~~~l~~~~~~~e~~----~~~~~iv~vSAktG~GI~eLle~----------I~~l~~-~~~~~~~~~~~~~~~V 183 (537)
T 3izy_P 124 -----VKKELLAYDVVCEDY----GGDVQAVHVSALTGENMMALAEA----------TIALAE-MLELKADPTGAVEGTV 183 (537)
T ss_dssp -----SSSHHHHTTSCCCCS----SSSEEECCCCSSSSCSSHHHHHH----------HHHHHT-TCCCCCCSSSSEEEEE
T ss_pred -----HHHHHHhhhhhHHhc----CCCceEEEEECCCCCCchhHHHH----------HHHhhh-cccccCCCCCCcceeE
Confidence 11222111 1111 13579999999999999986432 333322 2344456678999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECC-eeeeeeCCCCeEEEEeccCCccccceeeEEecC
Q 011836 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 280 ~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~-~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 356 (476)
.+++ ++.|++++|+|.+|+|++||.+. ++....+|++|+.++ .++++|.||++|+| .|++ ....+||+|+.+
T Consensus 184 ~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~ 258 (537)
T 3izy_P 184 IESFTDKGRGPVTTAIIQRGTLRKGSILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEV 258 (537)
T ss_dssp EEECCCTTCCCCEEEEEEEECCSSEEEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSC
T ss_pred EEEEEeCCCceEEEEEEecCEEEcCCEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEec
Confidence 9998 57899999999999999999874 455678999999985 79999999999985 6766 345899999988
Q ss_pred CCC
Q 011836 357 AKP 359 (476)
Q Consensus 357 ~~~ 359 (476)
+++
T Consensus 259 ~~~ 261 (537)
T 3izy_P 259 ESE 261 (537)
T ss_dssp CSS
T ss_pred CCh
Confidence 654
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.97 E-value=1.6e-32 Score=283.80 Aligned_cols=248 Identities=28% Similarity=0.344 Sum_probs=192.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++||+|||||||+++|+...- .....+|+|++.....++++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-------------------------------~~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-------------------------------ASGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-------------------------------SBTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-------------------------------ccccCCCeeEeEEEEEEEECCE
Confidence 468999999999999999999963210 0112478999888888888889
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHH
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 203 (476)
.++|+|||||.+|..++.++++.+|++|||+|+.+|.+ +||.+++..+...++| +|+++||+|++.+++.+
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~- 122 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDR- 122 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCC-
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHHH-
Confidence 99999999999999999999999999999999999875 7999999999999999 99999999996543211
Q ss_pred HHHHHHHHHHHHHHhcCCCc---cCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhh---CCCCCCCCCCCceE
Q 011836 204 RYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR---IEITPRDPNGPFRM 277 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~---l~~~~~~~~~~~~~ 277 (476)
+.. .+...++.+ ..+++++|+||++|.|+.++ ++.|.. +..+...++.|++.
T Consensus 123 ----v~~----~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL--------------le~I~~~~~~~~~~~~~~~~~~~ 180 (501)
T 1zo1_I 123 ----VKN----ELSQYGILPEEWGGESQFVHVSAKAGTGIDEL--------------LDAILLQAEVLELKAVRKGMASG 180 (501)
T ss_dssp ----TTC----CCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH--------------HHHTTTTCCCSTTTSCCCSBCEE
T ss_pred ----HHH----HHHHhhhhHHHhCCCccEEEEeeeeccCcchh--------------hhhhhhhhhhhcccccccccccc
Confidence 111 111112110 12479999999999999984 443322 22233455778899
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC-CeeeeeeCCCCeEEEEeccCCccccceeeEEe
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 354 (476)
.|.+++ ++.|++++|+|.+|+|++||.+++++ ...+|++|+.. +.++++|.||+.|.+ .|++. ....|++++
T Consensus 181 ~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i--~gl~~-~~~~Gd~~~ 255 (501)
T 1zo1_I 181 AVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEI--LGLSG-VPAAGDEVT 255 (501)
T ss_dssp EEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSS--EEECS-CCCTTEEEE
T ss_pred ceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEE--eCCCC-CCCCCCEEE
Confidence 999988 57899999999999999999999865 45699999864 679999999999985 35542 247899988
Q ss_pred cCCC
Q 011836 355 SVAK 358 (476)
Q Consensus 355 ~~~~ 358 (476)
...+
T Consensus 256 ~~~~ 259 (501)
T 1zo1_I 256 VVRD 259 (501)
T ss_dssp EECS
T ss_pred ecCC
Confidence 6653
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=6.9e-31 Score=282.96 Aligned_cols=271 Identities=24% Similarity=0.275 Sum_probs=212.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++||+|||||||+++|++..+.+...+ .- .....++|....|+.+|+|+......+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G------------~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG------------RV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC------------CG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc------------ee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 4578999999999999999999997776543221 00 1224568888999999999998888888999
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
..++|+|||||.+|...+.++++.+|++++|+|+..|.. .|+++++..+...++| +|+++||+|+. .. ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-------~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-~~ 143 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-------VGTERAWTVAERLGLP-RMVVVTKLDKG-GD-YY 143 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECGGGC-CC-HH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-------hhHHHHHHHHHHccCC-EEEEecCCchh-hh-HH
Confidence 999999999999999999999999999999999999863 7899999999999999 78899999996 32 22
Q ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Q 011836 203 ERYDEIESKMTPFLK----------------------------------------------------------------- 217 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~----------------------------------------------------------------- 217 (476)
++.+++...+.
T Consensus 144 ----~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 144 ----ALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp ----HHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22333333222
Q ss_pred ------hcCCC-------------ccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCC-CCCCceE
Q 011836 218 ------ASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRM 277 (476)
Q Consensus 218 ------~~g~~-------------~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~~~~~ 277 (476)
...+. ....+|++++||++|.|+..+ |..++..+|.|... .+.|+.+
T Consensus 220 ~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~~ 286 (665)
T 2dy1_A 220 LEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPLA 286 (665)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCEE
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeEE
Confidence 00000 001268888999999988874 33355667776543 6789999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 278 ~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
.|.+++ +..|++++|||.+|+|++||.|++.+ ...+|.+|+.+ +.++++|.||++|++ .|++ ++++||
T Consensus 287 ~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gd 360 (665)
T 2dy1_A 287 KVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGM 360 (665)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTC
T ss_pred EEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCC
Confidence 999988 46899999999999999999999877 67899998764 568999999999996 5664 588999
Q ss_pred EEecCCCC
Q 011836 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
+|++.+.+
T Consensus 361 tl~~~~~~ 368 (665)
T 2dy1_A 361 VLWQGEKP 368 (665)
T ss_dssp EEESSSCC
T ss_pred EEecCCCc
Confidence 99987654
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=5.1e-31 Score=279.01 Aligned_cols=263 Identities=21% Similarity=0.373 Sum_probs=191.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
.+.++|+++||+|||||||+++|+.... .+. ..+|+|.+.+...+.+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v---------------------------~~~----e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAV---------------------------ASR----EAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHH---------------------------SCC--------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccC---------------------------ccc----cCCceecccCeEEEeech
Confidence 3467999999999999999999974321 010 01345544443333321
Q ss_pred -----------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc
Q 011836 122 -----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 122 -----------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 184 (476)
...++|||||||.+|...+.++++.+|++|||+|+.+|+. +||.+++..+...++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe
Confidence 2269999999999999999889999999999999999863 7999999999999999
Q ss_pred eEEEEEeeccCCCCCch------------------HHHHHHHHHHHHHHHHhcCCCc---------cCCeeEEEeecccC
Q 011836 185 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 237 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~------------------~~~~~~~~~~l~~~l~~~g~~~---------~~~~~iipiSa~~g 237 (476)
+|+++||||+... |. .+.+.+...++...|...++.. ...++++|+||++|
T Consensus 125 -iIVViNKiDl~~~-~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGSTT-CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEecccccccc-cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8999999999532 21 1334444555555666555531 13569999999999
Q ss_pred ccccccccCCCCCCCChhhHHHHHhh-CC-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc-
Q 011836 238 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 312 (476)
Q Consensus 238 ~~i~~~~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~~~~~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~- 312 (476)
.|+.++++. +...+.. ++ ....+.+.|+++.|.+++ ++.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 ~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~ 272 (594)
T 1g7s_A 203 EGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272 (594)
T ss_dssp TTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE
T ss_pred CCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc
Confidence 999986432 3333322 11 112245789999999987 56799999999999999999999999876
Q ss_pred -eEEEEEEEEC------------CeeeeeeC--CCCeEEEEeccCCccccceeeEEecCCCC
Q 011836 313 -QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 313 -~~~V~si~~~------------~~~v~~a~--aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
..+|++|... ..++++|. +|+.|+ +.+++ ++..|++|+..+++
T Consensus 273 ~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTDP 330 (594)
T ss_dssp EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSSH
T ss_pred eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCCH
Confidence 4599999763 35678887 666665 45553 46899999987643
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.96 E-value=7e-28 Score=265.46 Aligned_cols=289 Identities=19% Similarity=0.269 Sum_probs=197.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..+||+|+||+|||||||+++|++..|.+..... | ....+|...+|+++|+|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------G-----EARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------C-----CceeecCchhhhhcceeEeeceeEEEec
Confidence 456799999999999999999999998887765320 1 1346788889999999998887766664
Q ss_pred ----------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCce
Q 011836 122 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 185 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~ 185 (476)
++.++|||||||.+|...+.++++.+|++|+|+|+.++.. .|+..++..+...++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK- 152 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE-
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-
Confidence 6889999999999999999999999999999999999864 6888888888888998
Q ss_pred EEEEEeeccCCCCC--ch----HHHHHHHHHHHHHHHHhc-----C---CCccCCeeEEEeecccCccccc---------
Q 011836 186 LLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKAS-----G---YNVKKDVQFLPISGLMGLNMKT--------- 242 (476)
Q Consensus 186 ~ivviNK~D~~~~~--~~----~~~~~~~~~~l~~~l~~~-----g---~~~~~~~~iipiSa~~g~~i~~--------- 242 (476)
+|+++||+|+...+ ++ ...++++.+.++..+..+ + +.+ ...++...|+++|+++.-
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p-~~~~v~~~sa~~g~~~~~~~f~~~y~~ 231 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP-ARGTVAFGSGLHGWAFTIRQFATRYAK 231 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCG-GGTCEEEEETTTTEEEEHHHHHHHHHT
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeece-EEeeeEEeecccccccchhhhhhhcch
Confidence 78999999984211 11 234566667676666432 1 221 012566779988765310
Q ss_pred cccC-----CCCCC------------------------------------------------------------------
Q 011836 243 RVDK-----SLCPW------------------------------------------------------------------ 251 (476)
Q Consensus 243 ~~~~-----~~~~w------------------------------------------------------------------ 251 (476)
.+.- ...-|
T Consensus 232 ~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e 311 (842)
T 1n0u_A 232 KFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDE 311 (842)
T ss_dssp TTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGG
T ss_pred hcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHH
Confidence 0000 00001
Q ss_pred ----------------CC-hhhHHH-HHhhCCCCC-------------------------CCCCCCceEEEEEEE--ccC
Q 011836 252 ----------------WN-GPCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKF--KDM 286 (476)
Q Consensus 252 ----------------~~-g~~L~~-~l~~l~~~~-------------------------~~~~~~~~~~i~~~~--~~~ 286 (476)
.. ...|++ +++.+|.|. .+.+.|+.+.|++++ +..
T Consensus 312 ~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~ 391 (842)
T 1n0u_A 312 KDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDK 391 (842)
T ss_dssp GGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSST
T ss_pred HhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCC
Confidence 00 023333 334566653 245789999999987 467
Q ss_pred Ce-EEEEEEEeeeecCCCEEEEecCC------c---eEEEEEEEEC----CeeeeeeCCCCeEEEEeccCCccccceeeE
Q 011836 287 GT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 287 G~-v~~G~v~sG~l~~g~~v~~~p~~------~---~~~V~si~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 352 (476)
|. +.++||+||+|+.||.|++...+ . ..+|.+|..+ ..++++|.||++|+ +.|++...+..| +
T Consensus 392 G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~~t~-T 468 (842)
T 1n0u_A 392 GRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG--LVGIDQFLLKTG-T 468 (842)
T ss_dssp TCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE--EESCTTTCCSSE-E
T ss_pred CceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE--EEccccceecce-e
Confidence 95 99999999999999999865322 2 5789998765 57899999999998 477765434556 8
Q ss_pred EecCC
Q 011836 353 LSSVA 357 (476)
Q Consensus 353 l~~~~ 357 (476)
|++.+
T Consensus 469 l~~~~ 473 (842)
T 1n0u_A 469 LTTSE 473 (842)
T ss_dssp EESCT
T ss_pred ecCCC
Confidence 88754
No 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.5e-19 Score=185.81 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=113.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+..... ......|+|.+.....+.+++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EEC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce------------------------------eecCCCCceeeeeEEEEEECC
Confidence 35689999999999999999999632110 112246788888778888899
Q ss_pred eEEEEEeCCCC----------cChHHH-HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 123 TRFTILDAPGH----------KSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh----------~~~~~~-~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
..+.|+||||+ +.|... ++.++..+|++|+|+|+.++.. .|..+++..+...+.| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999998 344332 3467889999999999999864 4677777777788888 999999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+... .+..+++..+++...+...+ .++++++||++|.|+.++.+
T Consensus 295 K~Dl~~~--~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAVDK--DESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGSCC--CTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCCCc--chHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 9999533 23334555666666555443 45899999999999998753
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.79 E-value=5.1e-20 Score=164.91 Aligned_cols=155 Identities=28% Similarity=0.397 Sum_probs=109.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|.+|+|||||+++|+.. .+. .....+++.+.....+..++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS--KVT-----------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT--CSS-----------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--ccc-----------------------------cCCCCceeEeeeEEEEEeCC
Confidence 45689999999999999999999531 111 01122344444445566778
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
..+.|+||||+.+|...+..++..+|++++|+|+.++.. .++.+.+..+...++| +++|+||+|+...+ .
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~ 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEAN--P 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--H
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcCC--H
Confidence 899999999999998877778889999999999988753 4667777777677888 89999999995432 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCc---cCCeeEEEeecccCcccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+ ++.. .+...+... ...++++++||++|.|+.++.+
T Consensus 125 ~---~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 125 D---RVMQ----ELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp H---HHHH----HHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred H---HHHH----HHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 2 1222 222222110 0136899999999999998644
No 35
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=3.7e-19 Score=184.04 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=119.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|++|+|||||+++|+..... ......|+|.+.....++.
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~~~~~------------------------------~~~~~~gtt~~~~~~~~~~ 240 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGEERV------------------------------IVSNVAGTTRDAVDTSFTY 240 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EECC------CTTSEEEEE
T ss_pred cccccceeEEecCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeEEEEEEEEEEE
Confidence 3456789999999999999999999632111 1112357788877778888
Q ss_pred CCeEEEEEeCCC----------CcChHHH-HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 121 ETTRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 121 ~~~~~~liDtPG----------h~~~~~~-~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
.+..++|||||| ++.|... .+.++..+|++|+|+|+.++.. .+..+++..+...+.| +|+|
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv 312 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIV 312 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEE
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 999999999999 5666544 4457889999999999999864 5788888888888988 8999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+||+|+... .+..+++..+.+...+...+ .++++++||++|.|+.++++
T Consensus 313 ~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 313 VNKWDAVDK--DESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp EECGGGSCC--CSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred EEChhcCCC--chHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 999999432 33455666677766666554 35899999999999998754
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=1.9e-18 Score=169.49 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=109.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
+.+.-.|+++|++|+|||||+++|+...-.+ .....+.|.+.....+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------------------------~s~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------------------------ISPKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------------------------cCCCCCceeeEEEEEEecC
Confidence 3456789999999999999999996422111 0123455555555566677
Q ss_pred -CeEEEEEeCCCCcCh----------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHH-HHHHHHcCCceEEEE
Q 011836 122 -TTRFTILDAPGHKSY----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLV 189 (476)
Q Consensus 122 -~~~~~liDtPGh~~~----------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~-l~~~~~~~ip~~ivv 189 (476)
+.+++|+||||+.++ ...+..++..+|++++|+|+.++.. .+.... +..+...++| +++|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEE
Confidence 899999999998654 3666778899999999999998742 355555 6666677888 8999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+||+|+.. + .+...+..+.+. ..++ ...+++|+||++|.|+.++.
T Consensus 129 ~NK~Dl~~-~--~~~~~~~~~~l~---~~~~----~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 129 INKIDKIG-P--AKNVLPLIDEIH---KKHP----ELTEIVPISALKGANLDELV 173 (308)
T ss_dssp EECGGGSS-S--GGGGHHHHHHHH---HHCT----TCCCEEECBTTTTBSHHHHH
T ss_pred EECccCCC-C--HHHHHHHHHHHH---Hhcc----CCCeEEEEeCCCCCCHHHHH
Confidence 99999941 1 112222333332 2332 13479999999999999853
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.5e-18 Score=161.53 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=105.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-eC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TE 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~ 121 (476)
...++|+++|++|+|||||+++|+..... + ......|.|.+.....+. ..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~~~~~~ 77 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------A------FASKTPGRTQHINYFSVGPAA 77 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------S------CTTCCCCSCCCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------e------eecCCCCcccceEEEEecCCC
Confidence 34689999999999999999999532100 0 001123455555444444 45
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011836 122 TTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 188 (476)
+..+.|+||||+.+ +....+.....+|++++|+|+.++.. ....+.+..+...++| +++
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i~ 149 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IHS 149 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEE
Confidence 68999999999633 23333444455899999999998642 3455666777777888 899
Q ss_pred EEeeccCCCCCchHHHHHHHHHHHHHHHHhc---CCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+||+|+.. .....+..+.+...+..+ +.. ...+++++||++|.|+.++
T Consensus 150 v~nK~Dl~~----~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 150 LLTKCDKLT----RQESINALRATQKSLDAYRDAGYA--GKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp EEECGGGSC----HHHHHHHHHHHHHHHHHHHHHTCC--SCEEEEEEBTTTTBSHHHH
T ss_pred EEeccccCC----hhhHHHHHHHHHHHHHhhhhcccC--CCCeEEEeecCCCcCHHHH
Confidence 999999943 233334444444444442 111 2568999999999999985
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=2.7e-18 Score=167.63 Aligned_cols=149 Identities=18% Similarity=0.135 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|+.....+.. ...+.|.+.....+.+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs------------------------------~~~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS------------------------------PRPQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeec------------------------------CCCCceeEEEEEEEEeCC
Confidence 34578999999999999999999743221110 012233333233355678
Q ss_pred eEEEEEeCCCCcC--------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEee
Q 011836 123 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNK 192 (476)
Q Consensus 123 ~~~~liDtPGh~~--------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK 192 (476)
.+++|+||||+.+ |......+++.+|++++|+|+.++.. ......+..+... ++| +++|+||
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 9999999999877 66677788899999999999998742 3445555666666 788 8899999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+|+... ... +.+.+..+ .+ ..+++|+||++|.|+.++
T Consensus 127 ~Dl~~~--~~~----~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 127 LDAAKY--PEE----AMKAYHEL---LP-----EAEPRMLSALDERQVAEL 163 (301)
T ss_dssp GGGCSS--HHH----HHHHHHHT---ST-----TSEEEECCTTCHHHHHHH
T ss_pred cccCCc--hHH----HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHH
Confidence 999432 110 22222222 22 247999999999999885
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=3.6e-18 Score=150.08 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=99.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+++|+...... .+...+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999996322100 11123455555556677788899
Q ss_pred EEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCC
Q 011836 126 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 126 ~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 198 (476)
.|+||||+.. +...+...+..+|++++|+|+..+.. .........+...++| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999887 45556667889999999999998632 2334455666667888 8999999999422
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+ +.+..+. .+++. +++++||++|.|+.++
T Consensus 124 ---~-------~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 124 ---E-------LYLGPLY-GLGFG-----DPIPTSSEHARGLEEL 152 (161)
T ss_dssp ---G-------GGCGGGG-GGSSC-----SCEECBTTTTBSHHHH
T ss_pred ---h-------HhHHHHH-hCCCC-----CeEEEecccCCChHHH
Confidence 1 1222233 44432 6899999999999985
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.75 E-value=9.5e-18 Score=150.03 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=100.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+... ... +....++.+.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQET--FGK-----------------------------QYKQTIGLDFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGG--TTH-----------------------------HHHHTTTSSEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCc--CCC-----------------------------CCCCceeEEEEEEEEEeCC
Confidence 456899999999999999999996321 110 0011111122223344443
Q ss_pred ---eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEeecc
Q 011836 123 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMD 194 (476)
Q Consensus 123 ---~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviNK~D 194 (476)
..+.|+||||+..|...+...+..+|++++|+|+.+... ++ .....+..+... +.|++++|+||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE---NLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 789999999999998888888999999999999987532 11 223333333332 6676789999999
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.... .+. ++...+.+..+ ++++++||++|.|+.++.
T Consensus 127 l~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 127 LEHMRTIKP-------EKHLRFCQENG------FSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp GGGGCSSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHH
T ss_pred cccccccCH-------HHHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Confidence 84311 111 22233444443 479999999999999853
No 41
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.6e-18 Score=153.66 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=104.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|.+|+|||||+++|+... ... ......|.+.......+...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 70 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDH--FDH---------------------------NISPTIGASFMTKTVPCGNE 70 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCC--CCT---------------------------TCCCCSSEEEEEEEEECSSS
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCC--CCC---------------------------CcCCCcceeEEEEEEEeCCE
Confidence 3457899999999999999999996321 100 00112344544444444445
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 6789999999999999888888999999999999987632 1 1223344444443 566 8999999998421
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +. ..+++..+++..+ ++++++||++|.|+.++
T Consensus 144 ~--~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 144 R--EV----PLKDAKEYAESIG------AIVVETSAKNAINIEEL 176 (192)
T ss_dssp C--CS----CHHHHHHHHHTTT------CEEEECBTTTTBSHHHH
T ss_pred c--cc----CHHHHHHHHHHcC------CEEEEEeCCCCcCHHHH
Confidence 1 10 1123344455543 47999999999999985
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=157.30 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=97.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
+...++.++|+++|++|+|||||+++|+.. ..... .....|.+.......+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~ 72 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKN--EFREN---------------------------ISATLGVDFQMKTLIV 72 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHC--CCC-------------------------------------CEEEEEEE
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhC--CCCcc---------------------------CCCCccceeEEEEEEE
Confidence 344566799999999999999999999632 11110 0011222222222233
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccC
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~ 195 (476)
......+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+.. .++| +++|+||+|+
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---F---LNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 3334679999999999999999899999999999999987642 1 122333333333 3677 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
......+....-..+....+.+..+ ++++++||++|.|+.++
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~SA~~g~gv~el 187 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFGEKLAMTYG------ALFCETSAKDGSNIVEA 187 (199)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred ccccccccccccCHHHHHHHHHHcC------CeEEEeeCCCCCCHHHH
Confidence 3110000000001122233444443 47999999999999985
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.1e-17 Score=148.08 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=101.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
+.+..+|+++|++|+|||||+++|+. +.... ......|.+.......+...
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVK--GQFHE---------------------------FQESTIGAAFLTQTVCLDDT 53 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHH--SCCCT---------------------------TCCCCSSEEEEEEEEEETTE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc--CCCCC---------------------------CCCCccceEEEEEEEEECCE
Confidence 34578999999999999999999953 21110 00112334443333334334
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+... ++| +++|+||+|+...
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 6789999999999999888888999999999999987531 1 1223333344433 455 8888999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +... ++...+.... .++++++||++|.|+.++
T Consensus 127 ~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 127 R--AVDF----QEAQSYADDN------SLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp C--CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred c--ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 1 1011 2223344443 358999999999999985
No 44
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=1.1e-17 Score=152.45 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=103.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
.....+..+|+++|++|+|||||+++|+. +.+.. . ....|+......+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~--~~~~~----------------------------~--~~~~t~~~~~~~~ 58 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKP--AQSSS----------------------------K--HITATVGYNVETF 58 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSC--CC----------------------------------CCCCCSSEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhc--CCCcc----------------------------c--ccccccceeEEEE
Confidence 34556678999999999999999999942 11100 0 0011222333445
Q ss_pred EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----------CCceEE
Q 011836 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLL 187 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----------~ip~~i 187 (476)
+..+..+.|+||||+.+|...+...+..+|++|+|+|+.+... | ....+.+..+... ++| +|
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-ii 131 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FL 131 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EE
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EE
Confidence 6788999999999999999888888999999999999998631 1 1233333333332 777 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHHHHH--HHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 188 LVVNKMDDHTVNWSKERYDEIESKMT--PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 188 vviNK~D~~~~~~~~~~~~~~~~~l~--~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|+||+|+.... . .+++.+.+. .+.+. ..++++++||++|.|+.++++
T Consensus 132 lv~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 132 FFANKMDAAGAK-T---AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EEEECTTSTTCC-C---HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred EEEECcCCCCCC-C---HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 999999995432 1 122222221 11122 256899999999999998644
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=1.2e-17 Score=149.89 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=100.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.....+|+++|++|+|||||+++|+.. .... ......|.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKD--QFVE---------------------------FQESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHC--CCTT---------------------------TSCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcC--CCCC---------------------------cCCCCceeEEEEEEEEECCE
Confidence 455689999999999999999999632 1100 00011222222222222223
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...++.+|++|+|+|+.+... + ....+.+..+... ++| +++|+||+|+...
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccccc
Confidence 4689999999999999888888999999999999987532 1 1233444444443 566 8999999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +. ..+++..+++..+ ++++++||++|.|+.++
T Consensus 133 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 133 R--KV----TAEDAQTYAQENG------LFFMETSAKTATNVKEI 165 (181)
T ss_dssp C--CS----CHHHHHHHHHHTT------CEEEECCSSSCTTHHHH
T ss_pred c--cC----CHHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 1 10 1123333444443 47999999999999985
No 46
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=151.25 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+. +... ....|+......+..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM--NEVV--------------------------------HTSPTIGSNVEEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT--TSCE--------------------------------EEECCSCSSCEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------cCcCCCccceEEEEECC
Confidence 5579999999999999999999952 1110 00112223334456678
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.|+||||+.+|...+...+..+|++|+|+|+.+... | ....+.+..+.. .++| +++|+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 999999999999998888888899999999999987631 1 123333333332 3566 8999999999532
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . .+++.+ .+....+. ...++++++||++|.|+.++
T Consensus 133 ~-~---~~~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 133 M-T---VAEISQ----FLKLTSIK-DHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp C-C---HHHHHH----HHTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred C-C---HHHHHH----HhChhhhc-CCCcEEEEccCCCCcCHHHH
Confidence 1 1 122222 22211111 12468999999999999985
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=151.69 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+.. .. ..+....++.+.....+..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADN--TF-----------------------------SGSYITTIGVDFKIRTVEI 53 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSC--C--------------------------------CCTTTBSEEEEEEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcC--CC-----------------------------CCccCCCceeEEEEEEEEE
Confidence 3456799999999999999999999421 10 1111233444554455555
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCC
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~ 196 (476)
.+ ..+.|+||||+.+|...+...+..+|++++|+|+.++.. + ......+..+... ++| +++|+||+|+.
T Consensus 54 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 126 (181)
T 3tw8_B 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLHEINQNCDDVC-RILVGNKNDDP 126 (181)
T ss_dssp TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHCTTSE-EEEEEECTTCG
T ss_pred CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECCCCc
Confidence 55 689999999999998888888899999999999988632 1 1222233333322 356 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..... .. .....+....+ ++++++||++|.|+.++.+
T Consensus 127 ~~~~~--~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 127 ERKVV--ET----EDAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp GGCCS--CH----HHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred hhccc--CH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 32110 01 22233444443 4799999999999998643
No 48
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.6e-18 Score=152.67 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=101.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+.... .. ......+.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~ 62 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF--MA---------------------------DCPHTIGVEFGTRIIEVSGQ 62 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CS---------------------------SCTTSCCCCEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCCccceEEEEEEEEECCe
Confidence 34579999999999999999999964211 00 00011233333333333333
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++++|+|+..... + ......+..+.. .++| +++|+||+|+...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 4689999999999999888889999999999999987642 1 122233333333 4566 8999999998421
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. +.. .+++..+++..+ ++++++||++|.|+.++
T Consensus 136 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 136 R--DVT----YEEAKQFAEENG------LLFLEASAKTGENVEDA 168 (179)
T ss_dssp C--CSC----HHHHHHHHHHTT------CEEEECCTTTCTTHHHH
T ss_pred c--ccC----HHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 1 111 123334445443 47999999999999985
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=151.67 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=105.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... . ..+....++.+.....+..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDT--Y-----------------------------TESYISTIGVDFKIRTIELD 61 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--C-----------------------------CSCCCCCSSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCC--C-----------------------------CCCCCCcccceEEEEEEEEC
Confidence 3457899999999999999999996321 1 11112334444444455555
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...++.+|++|+|+|+.+... + ......+..+... ++| +++|+||+|+.
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 5 679999999999999888889999999999999988532 1 1233333434433 566 89999999985
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... .... .....+...++ ++++++||++|.|+.++++
T Consensus 135 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 135 TKK--VVDY----TTAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TTC--CSCH----HHHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 332 1111 12233444443 4799999999999998644
No 50
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=2.4e-17 Score=150.50 Aligned_cols=168 Identities=15% Similarity=0.126 Sum_probs=98.5
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
......++..+|+++|..|+|||||+++|.. ..... ...+.+......
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~-----------------------------~~~~~~~~~~~~ 59 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN-----------------------------ETLFLESTNKIY 59 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHS---CCCGG-----------------------------GGGGCCCCCSCE
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc-----------------------------ceeeecccccee
Confidence 4445666789999999999999999997742 11110 111222222222
Q ss_pred EEE---eCCeEEEEEeCCCCcChHHHH---HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEE
Q 011836 117 HFE---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLL 188 (476)
Q Consensus 117 ~~~---~~~~~~~liDtPGh~~~~~~~---~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~iv 188 (476)
.+. .....+.|+||||+.+|...+ ...++.+|++|+|+|+.+..++ .+ ....+.+..+. ..++| +++
T Consensus 60 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~---~~~~~~l~~~~~~~~~~p-iil 134 (196)
T 3llu_A 60 KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-AL---TRLHITVSKAYKVNPDMN-FEV 134 (196)
T ss_dssp EEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-HH---HHHHHHHHHHHHHCTTCE-EEE
T ss_pred eeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-HH---HHHHHHHHHHHhcCCCCc-EEE
Confidence 222 345789999999999998776 6788999999999999986211 11 11222222221 12666 899
Q ss_pred EEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+||+|+...+...+..+.+.......+...... ...++++++||++ .|+.++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHH
T ss_pred EEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHH
Confidence 9999998432211222333333333333332211 1257899999999 999885
No 51
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.74 E-value=1.9e-17 Score=146.90 Aligned_cols=152 Identities=17% Similarity=0.233 Sum_probs=100.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+. +... ....|+......+...+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV--GEVV--------------------------------TTIPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH--SSCC--------------------------------CCCCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------CcCCcCccceEEEEECC
Confidence 4568999999999999999999953 1110 01112223334456678
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|+.+... | ....+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 999999999999998888888899999999999987631 1 122233332222 3666 9999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. . .+++...+ ...... ...++++++||++|.|+.++.
T Consensus 124 ~-~---~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 124 M-T---SSEMANSL----GLPALK-DRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp C-C---HHHHHHHH----TGGGCT-TSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHHHh----Cchhcc-CCceEEEECcCCCCcCHHHHH
Confidence 1 1 12222222 111111 124689999999999999853
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=154.06 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=101.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... +. .+....++.+.....+...
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 65 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDK--FN-----------------------------PSFITTIGIDFKIKTVDIN 65 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCC--CC-----------------------------CSSSCCCSCCEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC-----------------------------cccCCcccceEEEEEEEEC
Confidence 3456899999999999999999996321 10 0011223333333344555
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+... ++| +++|+||+|+.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 138 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDME 138 (213)
T ss_dssp TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSE-EEEEEECTTCS
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 5 689999999999998888888899999999999987532 1 1223344444332 566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
......+ ....+...++ ++++++||++|.|+.++.+
T Consensus 139 ~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 139 TRVVTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp SCCSCHH-------HHHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred ccccCHH-------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 3222222 2223344444 3799999999999998644
No 53
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=154.19 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=104.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
++....++|+++|++|+|||||+++|+...-... .....|.+.......+.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~ 70 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIGVEFSTRTVMLG 70 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSSEEEEEEEEEET
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEEC
Confidence 3445679999999999999999999964211000 00112333333333333
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
.....+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+... ++| +++|+||+|+.
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCcc
Confidence 345789999999999998888888999999999999987532 1 1233344444432 566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... +.. ..+...++...+ ++++++||++|.|+.++.+
T Consensus 144 ~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 144 QAR--EVP----TEEARMFAENNG------LLFLETSALDSTNVELAFE 180 (193)
T ss_dssp GGC--CSC----HHHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccC----HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 321 101 122333444443 4799999999999998643
No 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.3e-17 Score=147.55 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=99.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+... ... ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSND--FAE---------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------CCCCccceeEEEEEEEECCEEE
Confidence 46899999999999999999996321 110 0011223333333333333346
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCCc
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 200 (476)
.+.|+||||+.+|...+...++.+|++++|+|+.+... + ......+..+.. .++| +++++||+|+...+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 89999999999999888888999999999999987632 1 122233333332 2566 889999999853210
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.... ..+....+....+ ++++++||++|.|+.++
T Consensus 126 ~~~v---~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 126 ERKV---AREEGEKLAEEKG------LLFFETSAKTGENVNDV 159 (170)
T ss_dssp CCCS---CHHHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred ccCC---CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 0000 1112223334443 47999999999999884
No 55
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=9.7e-18 Score=151.22 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=102.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+.... . ......++.+.....+..+
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKF--K-----------------------------DDSNHTIGVEFGSKIINVG 55 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSC--C-----------------------------TTCCCCSEEEEEEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCccceEEEEEEEEEC
Confidence 34578999999999999999999963211 0 0112233444434444454
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... +. .....+..+.. .++| +++|+||+|+.
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4 689999999999999888888999999999999987532 11 22223333332 4566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... +... .+...+....+ ++++++||++|.|+.++.+
T Consensus 129 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 129 ADR--EVTF----LEASRFAQENE------LMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GGC--CSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 211 1011 22233444443 5899999999999998643
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=1.4e-17 Score=148.77 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=100.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
+.+..+|+++|++|+|||||+++|+...- . ......++.+.....+..+
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 59 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSF--D-----------------------------NTYQATIGIDFLSKTMYLE 59 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCC--C-----------------------------SSCCCCCSEEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCceeeEEEEEEEEEC
Confidence 34568999999999999999999963211 0 0112223333333344444
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .++| +++|+||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4 589999999999998888888999999999999987532 1 122333333332 3666 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... +... .+...+++..+ ++++++||++|.|+.++
T Consensus 133 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 133 DKR--QVST----EEGERKAKELN------VMFIETSAKAGYNVKQL 167 (179)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEEEBTTTTBSHHHH
T ss_pred ccC--cCCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHH
Confidence 321 1001 12222334433 47999999999999884
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=151.55 Aligned_cols=157 Identities=20% Similarity=0.169 Sum_probs=101.1
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
.......++|+++|.+|+|||||+++|+... .. ......++.+.....+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~ 68 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDT--FC-----------------------------EACKSTVGVDFKIKTV 68 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEE
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCC--CC-----------------------------cCCCCccceeEEEEEE
Confidence 3344557899999999999999999994211 00 0011222233333334
Q ss_pred EeCC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeec
Q 011836 119 ETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKM 193 (476)
Q Consensus 119 ~~~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~ 193 (476)
..++ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+... ++| +++|+||+
T Consensus 69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilV~NK~ 141 (192)
T 2il1_A 69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---F---DDLPKWMKMIDKYASEDAE-LLLVGNKL 141 (192)
T ss_dssp EETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECG
T ss_pred EECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECc
Confidence 4444 579999999999999988899999999999999988642 1 1223333344432 566 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+.... +... ++...+.+.+. ..+++++||++|.|+.++.
T Consensus 142 Dl~~~~--~v~~----~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 142 DCETDR--EITR----QQGEKFAQQIT-----GMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp GGGGGC--CSCH----HHHHHHHHTST-----TCEEEECBTTTTBSHHHHH
T ss_pred cccccc--ccCH----HHHHHHHHhcC-----CCeEEEEeCCCCCCHHHHH
Confidence 984321 1001 12233333321 3589999999999999863
No 58
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.73 E-value=2.6e-18 Score=163.90 Aligned_cols=144 Identities=20% Similarity=0.176 Sum_probs=101.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+... .......|+|++.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-------------------------------~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-------------------------------QRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-------------------------------EEEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-------------------------------CCccCCCCceEEEEEEEEEECCeEE
Confidence 589999999999999999994211 0111235778777777888889999
Q ss_pred EEEeCCCCcChHHH----------HHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 126 TILDAPGHKSYVPN----------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 126 ~liDtPGh~~~~~~----------~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
.|+||||+..+... ....+ ..+|++|+|+|+... .........+..+++| +++|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887542 22233 689999999999873 2445555666777888 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+..... ... .+..+.+.+| ++++++||++|.|+.++
T Consensus 121 Dl~~~~~----~~~---~~~~l~~~lg------~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 121 DIAEHRG----ISI---DTEKLESLLG------CSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp HHHHHTT----CEE---CHHHHHHHHC------SCEEECBGGGTBSHHHH
T ss_pred hcCCcCC----cHH---HHHHHHHHcC------CCEEEEECCCCCCHHHH
Confidence 9832110 001 1122223333 48999999999999984
No 59
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.73 E-value=2.2e-17 Score=149.73 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=102.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+.. .... ....|+......+..
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~ 64 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASG--QFNE-------------------------------DMIPTVGFNMRKITK 64 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHS--CCCC-------------------------------SCCCCCSEEEEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcC--CCCC-------------------------------ccCCCCceeEEEEEe
Confidence 4456799999999999999999999532 1110 011222233344667
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 196 (476)
.+..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 88999999999999999888888999999999999987521 1 122333333322 4677 89999999995
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .. +++.+. +...... ...++++++||++|.|+.++
T Consensus 138 ~~~-~~---~~~~~~----~~~~~~~-~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 138 GAL-DE---KELIEK----MNLSAIQ-DREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp TCC-CH---HHHHHH----TTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred cCC-CH---HHHHHH----hChhhhc-cCCeeEEEEECCCCCCHHHH
Confidence 431 11 122221 1111111 13568999999999999985
No 60
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=3e-17 Score=146.63 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... ... +....++.+.....+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 52 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNK--FDT-----------------------------QLFHTIGVEFLNKDLEVD 52 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSC--CCC---------------------------------CCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCceeeeEEEEEEEEC
Confidence 3457899999999999999999996321 110 111222233333344444
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEee
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 192 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivviNK 192 (476)
+ ..+.|+||||+.+|...+...+..+|++++|+|+.+... +. .....+..+.. .++| +++|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTCSCTTTSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHccccccCCCc-EEEEEEC
Confidence 4 589999999999999888888999999999999987642 11 12222222221 4567 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+|+....... +++..+++.. ..++++++||++|.|+.++.
T Consensus 126 ~Dl~~~~~~~-------~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 126 IDISERQVST-------EEAQAWCRDN-----GDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp TTCSSCSSCH-------HHHHHHHHHT-----TCCCEEECCTTTCTTHHHHH
T ss_pred CcccccccCH-------HHHHHHHHhc-----CCceEEEEeCCCCCCHHHHH
Confidence 9985322222 2222333322 14589999999999999853
No 61
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.73 E-value=4.3e-18 Score=164.12 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=104.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+.... ......|+|++.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 458999999999999999999953210 1112457787777778888889
Q ss_pred EEEEEeCCCCcChHH---------HHH---HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 124 RFTILDAPGHKSYVP---------NMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~~~~---------~~~---~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
.+.|+||||+.+|.. .+. .....+|++|+|+|+... .........+..+++| +++|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999888652 111 123689999999999873 2455566667778999 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+|+.... .....+..+.+.+| ++++++||++|.|+.++.
T Consensus 121 K~Dl~~~~-------~~~~~~~~l~~~lg------~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 121 MLDIAEKQ-------NIRIEIDALSARLG------CPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp CHHHHHHT-------TEEECHHHHHHHHT------SCEEECCCGGGHHHHHHH
T ss_pred Cccchhhh-------hHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHH
Confidence 99983211 00011222333333 479999999999998853
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=4.7e-18 Score=166.08 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=101.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|+.....+ ..+ ..+.|.+.....+.+++
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------------------~s~------~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI------------------------TSR------KAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE------------------------CCC------CSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc------------------------cCC------CCCcceeeEEEEEEECC
Confidence 345689999999999999999996421110 000 11223222223356778
Q ss_pred eEEEEEeCCCCc-Ch--------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 123 TRFTILDAPGHK-SY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~-~~--------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
.+++|+||||+. ++ ...+..++..+|++++|+|+.. .. .+++..+..+...+.| +++++||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EEEEEECc
Confidence 899999999997 32 2223455678999999999976 32 5666676767667888 78999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+.. ....+ .+.+..+...+++ ..++|+||++|.|+.++.
T Consensus 127 D~~~---~~~~~---~~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 127 DNVQ---EKADL---LPHLQFLASQMNF-----LDIVPISAETGLNVDTIA 166 (301)
T ss_dssp TTCC---CHHHH---HHHHHHHHTTSCC-----SEEEECCTTTTTTHHHHH
T ss_pred ccCc---cHHHH---HHHHHHHHHhcCc-----CceEEEECCCCCCHHHHH
Confidence 9843 12222 2333334334443 279999999999998853
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=5.9e-18 Score=153.43 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=104.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|.+|+|||||+++|+... ... ......|.+.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDS--FTP---------------------------AFVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--CCC---------------------------SCCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CcCCceeEEEEEEEEEECCe
Confidence 3456899999999999999999996321 100 00112344444333333334
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... + ....+.+..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 5689999999999998888888899999999999987532 1 1334444444443 566 8999999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. .. ..+++..+.+.++ ++++++||++|.|+.++.+
T Consensus 143 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 143 R--VV----PAEDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp C--CS----CHHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred c--CC----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 00 0123333444444 4799999999999998643
No 64
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=5e-17 Score=143.29 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=97.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+... +. + ...|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE--IV-------------------------T-------TIPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC--SS-------------------------C-------CCCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--cC-------------------------c-------ccCcCceeEEEEEECCEEE
Confidence 479999999999999999996321 00 0 0112223334456678899
Q ss_pred EEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCCch
Q 011836 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 201 (476)
.|+||||+.+|...+...+..+|++++|+|+.+... | ....+.+..+.. .++| +++|+||+|+.... .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-N 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-C
Confidence 999999999999888888999999999999987531 1 122233333222 2566 89999999995431 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+++.+. +...... ...++++++||++|.|+.++
T Consensus 119 ---~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 119 ---AAEITDK----LGLHSLR-HRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ---HHHHHHH----TTGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred ---HHHHHHH----hCccccc-CccEEEEEcccCCCcCHHHH
Confidence 1222222 2111111 12468999999999999985
No 65
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=151.75 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=101.5
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
....+..+|+++|++|+|||||+++|+...... .....|+......+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~~t~~~~~~~~~ 63 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQS--------------------------------QNILPTIGFSIEKFK 63 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCC--------------------------------SSCCCCSSEEEEEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------------------------CCcCCccceeEEEEE
Confidence 344557899999999999999999984321000 001123333344566
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeec
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~ 193 (476)
.++..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ....+.+..+.. .++| +++|+||+
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 136 (190)
T 2h57_A 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKM 136 (190)
T ss_dssp CSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECT
T ss_pred ECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCc
Confidence 678999999999999998888888999999999999987531 1 122333333332 3667 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+.... . .+++ ...+....+. ...++++++||++|.|+.++.
T Consensus 137 Dl~~~~-~---~~~~----~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 137 DLRDAV-T---SVKV----SQLLCLENIK-DKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp TSTTCC-C---HHHH----HHHHTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred CcccCC-C---HHHH----HHHhChhhcc-CCceEEEEccCCCCcCHHHHH
Confidence 995321 1 1222 2233211111 125689999999999999853
No 66
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.73 E-value=1.2e-17 Score=151.84 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=101.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE----
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA---- 116 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~---- 116 (476)
.....++|+++|++|+|||||++.|.. ...... .............|+...+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~---~~~~~~--------------------~~~~~~~~~~~~~t~~~~~~~~~~ 66 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS---KVPEGR--------------------KGEMVSLATEDERTLFFDFLPLDI 66 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH---TSCGGG--------------------BCCCEEEECSSCEEEEEEECCSSC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh---hccccc--------------------cccccccccccccceeeeeccccc
Confidence 345678999999999999999976532 111100 00000000011223332222
Q ss_pred -EEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH----HHH-----cCCceE
Q 011836 117 -HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKT-----LGVTKL 186 (476)
Q Consensus 117 -~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~----~~~-----~~ip~~ 186 (476)
.+......+.|+||||+.+|...+...++.+|++|+|+|+.++.. .+..+.+.. +.. .++| +
T Consensus 67 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-i 138 (198)
T 3t1o_A 67 GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-I 138 (198)
T ss_dssp CCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-E
T ss_pred ccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-E
Confidence 222345689999999999999999899999999999999996532 122222222 222 3667 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
++|+||+|+... .. .+++..+++..++ .+++++||++|.|+.++++
T Consensus 139 ilv~NK~Dl~~~-~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 139 VIQVNKRDLPDA-LP-------VEMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp EEEEECTTSTTC-CC-------HHHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred EEEEEchhcccc-cC-------HHHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 999999999543 11 2334445555543 2799999999999998643
No 67
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.73 E-value=8e-18 Score=151.45 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=79.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+... .. .+....++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA--FN-----------------------------STFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCcccceeEEEEEEECC
Confidence 456899999999999999999995321 10 01112234444334444454
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+.+|...+...++.+|++|+|+|+.+... | ....+.+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998877778899999999999987531 1 1233344444432 566 899999999953
Q ss_pred CC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. .+. +++..+.+..+ ++++++||++|.|+.++..
T Consensus 128 ~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KRQVSK-------ERGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CCCSCH-------HHHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cCcCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 111 22233444444 4799999999999998643
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=151.38 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=101.6
Q ss_pred ccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEE
Q 011836 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
+.......+|+++|.+|+|||||+++|+. +.+.. +....++.+.....+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~ 71 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKT--GAFSE-----------------------------RQGSTIGVDFTMKTL 71 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHH--SCC---------------------------------------CEEEEEE
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhh--CCCCC-----------------------------CCCCCcceEEEEEEE
Confidence 33445578999999999999999999953 21111 001112222323344
Q ss_pred EeCC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeec
Q 011836 119 ETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKM 193 (476)
Q Consensus 119 ~~~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~ 193 (476)
..++ ..+.|+||||+.+|...+...++.+|++|+|+|+.+... | ......+..+.. .++| +++|+||+
T Consensus 72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~ 144 (201)
T 2hup_A 72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIV-QLLIGNKS 144 (201)
T ss_dssp EETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECT
T ss_pred EECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECC
Confidence 4444 689999999999999988889999999999999987532 1 123334444443 3466 89999999
Q ss_pred cCCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 194 DDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 194 D~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+.... .. .+++..++...++. +++++||++|.|+.++++
T Consensus 145 Dl~~~~~v~-------~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 145 DLSELREVS-------LAEAQSLAEHYDIL-----CAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp TCGGGCCSC-------HHHHHHHHHHTTCS-----EEEECBTTTTBSHHHHHH
T ss_pred ccccccccC-------HHHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHHH
Confidence 994311 11 12333445555432 799999999999998643
No 69
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=1.8e-17 Score=146.87 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=98.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
.++|+++|++|+|||||+++|+.. .... .....++.+.....+..+ .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED--KFNP-----------------------------SFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC--CCCC------------------------------------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999632 1110 011122222222334444 3
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+... ++| +++|+||+|+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc
Confidence 578999999999998888888899999999999987532 1 1223344444332 566 89999999984322
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
...+ ....+.+..+ ++++++||++|.|+.++.+
T Consensus 125 ~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 125 VTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp SCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred cCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 2222 2233344444 4799999999999998643
No 70
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=1.3e-17 Score=150.16 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=99.6
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEE
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
......+..+|+++|++|+|||||+++|+.. ... ....|+......
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~ 59 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMN--EVV--------------------------------HTSPTIGSNVEE 59 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTT--SCE--------------------------------EEECCSSSSCEE
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------ccCCcCceeeEE
Confidence 3344455789999999999999999999531 110 011122222334
Q ss_pred EEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 011836 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~ 193 (476)
+..++..+.|+||||+.+|...+...+..+|++++|+|+.+... | ....+.+..+.. .++| +++|+||+
T Consensus 60 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 132 (181)
T 2h17_A 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQ 132 (181)
T ss_dssp EEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECT
T ss_pred EEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEECC
Confidence 55678999999999999998888888899999999999987631 1 123333333332 4566 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+.... .. ++ +...+....+. ...++++++||++|.|+.++
T Consensus 133 Dl~~~~-~~---~~----i~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 133 DVKECM-TV---AE----ISQFLKLTSIK-DHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp TSTTCC-CH---HH----HHHHTTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred CcccCC-CH---HH----HHHHhCccccc-CCceEEEEccCCCCcCHHHH
Confidence 995321 11 12 22222111111 12468999999999999884
No 71
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.1e-17 Score=148.04 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=94.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+...- . .......++.+.....+..
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~t~~~~~~~~~~~~ 55 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAF--L----------------------------AGTFISTVGIDFRNKVLDV 55 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCC--C----------------------------CCCCCCCCSCEEEEEEEEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCC--C----------------------------CCCcCCceeeEEEEEEEEE
Confidence 345678999999999999999999963211 0 0001122222222223334
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccC
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~ 195 (476)
++ ..+.|+||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+.. .++| +++|+||+|+
T Consensus 56 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl 128 (180)
T 2g6b_A 56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F---DNIQAWLTEIHEYAQHDVA-LMLLGNKVDS 128 (180)
T ss_dssp TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECCST
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 43 588999999999998888888999999999999987632 1 122333333333 4566 8999999999
Q ss_pred CCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 196 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.... ... ++...+.+..+ ++++++||++|.|+.++.
T Consensus 129 ~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 129 AHERVVKR-------EDGEKLAKEYG------LPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp TSCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHH
T ss_pred CcccccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 5321 111 12223344443 479999999999999853
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=1.4e-17 Score=150.36 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+... +... ..+.+.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSS--CCCC------------------------------CCTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------CCCCchheEEEEEEECC
Confidence 356899999999999999999996321 1100 01111111112233333
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 196 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... +. .....+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 457889999999998888888999999999999987532 11 12222222322 3577 89999999996
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
......+. +..+....+ ++++++||++|.|+.++.+
T Consensus 123 ~~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 123 SRTVDTKQ-------AQDLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp SCSSCHHH-------HHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHH-------HHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 43323322 223334443 4799999999999998644
No 73
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.72 E-value=5.1e-18 Score=149.65 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+.. ..... . ....+ +.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~------------------------~---~~~~~-~~~~~~~~~~~~~~ 51 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG--TFIEK------------------------Y---DPTIE-DFYRKEIEVDSSPS 51 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS--CCCSC------------------------C---CTTCC-EEEEEEEEETTEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC--CCccc------------------------C---CCCcc-eeEEEEEEECCEEE
Confidence 4689999999999999999999632 11100 0 00011 11111112222335
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 199 (476)
.+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .++| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESER 124 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGC
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccc
Confidence 69999999999999888888999999999999987532 1 112222222222 3677 89999999984221
Q ss_pred -chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... .+...+....+ ++++++||++|.|+.++.
T Consensus 125 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 125 EVSS-------SEGRALAEEWG------CPFMETSAKSKTMVDELF 157 (167)
T ss_dssp CSCH-------HHHHHHHHHHT------SCEEEECTTCHHHHHHHH
T ss_pred cCCH-------HHHHHHHHHhC------CCEEEecCCCCcCHHHHH
Confidence 111 12233444444 379999999999999853
No 74
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.72 E-value=2.9e-17 Score=149.93 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=72.9
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEeeccCCCCCch
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~ 201 (476)
..+.|+||||+.+|...+...+..+|++|+|+|+.++.. + ......+..+.. .+.| +++|+||+|+......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 789999999999999888889999999999999988642 1 122333333333 4555 9999999994211111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.+++..++...+ ++++++||++|.|+.++.+
T Consensus 166 -------~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 166 -------ILEVQKYAQDNN------LLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp -------HHHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred -------HHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Confidence 123344555543 4899999999999998643
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.3e-17 Score=149.77 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=103.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+... ... ......|.+.......+..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~ 61 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDT--FDP---------------------------ELAATIGVDFKVKTISVDG 61 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCCSEEEEEEEEEETT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCC--CCc---------------------------cCCCccceEEEEEEEEECC
Confidence 44567899999999999999999995321 110 0011223344333333434
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 196 (476)
....+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~ 134 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIV-NMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCc
Confidence 45789999999999998888888999999999999987632 1 122333333333 2455 88999999994
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
...... ++...+++..+ ++++++||++|.|+.++.+
T Consensus 135 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 135 NREVDR-------NEGLKFARKHS------MLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp SCCSCH-------HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred ccccCH-------HHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 332222 22233444443 4799999999999998643
No 76
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=1.3e-17 Score=159.37 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=104.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+... . ......|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~--~-----------------------------~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTK--Q-----------------------------YVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTC--E-----------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCC--C-----------------------------cccCCCCceEEEEEEEEEECC
Confidence 456899999999999999999995211 0 011235788887777788888
Q ss_pred eEEEEEeCCCCcChHHH-----H-HHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSYVPN-----M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~-----~-~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
..+.|+||||+..|... + ...+ ..+|++++|+|+.... .....+..+..+++| +++|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999998877531 1 1222 4799999999998742 334455666677898 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... .+......+.+.+| ++++++||++|.|+.++++
T Consensus 122 l~~~~-------~i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 122 EAKKT-------GMKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHT-------TCCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred CCCcc-------chHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 83110 00011233344444 4799999999999988643
No 77
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=5.9e-17 Score=166.70 Aligned_cols=147 Identities=20% Similarity=0.318 Sum_probs=101.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+|+|+.....+ .+...|+|.+.....+++.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999996322111 11246788888888889999999
Q ss_pred EEEeCCCCcC---------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 126 TILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~---------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.++||||... +...+..++..+|++|+|+|+..+.. ....+....++..++| +++|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~- 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAEN- 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCS-
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCC-
Confidence 9999999764 34455667889999999999998753 2334455666667888 8999999998
Q ss_pred CCCchHHHHHHHHHHH-HHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
. .. . ...+ ..+ ..+|+. +++++||++|.|+.++.+
T Consensus 123 -~---~~-~---~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 123 -L---RE-F---EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp -H---HH-H---HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred -c---cc-c---HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 2 11 0 1122 222 345553 579999999999998643
No 78
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=2.5e-17 Score=145.85 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=101.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+... ... ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDS--FDP---------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CCC---------------------------CCCCceeEEEEEEEEEECCeE
Confidence 456899999999999999999996321 100 001123444444333343345
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+... ++| +++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F---STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 789999999999998888888999999999999987632 1 1223334444443 455 88899999994321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ..+....+....+ ++++++||++|.|+.++
T Consensus 128 --~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 128 --EV----MERDAKDYADSIH------AIFVETSAKNAININEL 159 (170)
T ss_dssp --CS----CHHHHHHHHHHTT------CEEEECBTTTTBSHHHH
T ss_pred --cc----CHHHHHHHHHHcC------CEEEEEeCCCCcCHHHH
Confidence 10 0122233344443 48999999999999985
No 79
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=9.7e-18 Score=161.45 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=104.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+.... ......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 468999999999999999999942110 1112467778777778888999
Q ss_pred EEEEEeCCCCcChHH------HHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEeecc
Q 011836 124 RFTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~-ip~~ivviNK~D 194 (476)
.+.|+||||+.+|.. .....+ ..+|++++|+|+..+ .+....+..+..++ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 999999999988754 222222 579999999999875 24555566666777 87 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+... .... .....+.+.+| ++++|+||++|.|+.++.
T Consensus 121 l~~~----~~~~---~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 121 LLKK----KGAK---IDIKKMRKELG------VPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp HHHH----HTCC---CCHHHHHHHHS------SCEEECBGGGTBTHHHHH
T ss_pred cCcc----cccH---HHHHHHHHHcC------CcEEEEEeCCCCCHHHHH
Confidence 7211 0000 11222333343 479999999999998864
No 80
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=3.7e-17 Score=144.20 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=95.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+... +... . ....+.+.. ....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSYR-KKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSC------------------------C---CTTCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc--cCCC------------------------C---CCCcceEEE-EEEEECCEE
Confidence 356899999999999999999996321 1100 0 001111111 111222233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... +. .....+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECcccccc
Confidence 579999999999999988888999999999999987531 11 12222222222 2677 8999999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. +.. .+++..+++..+ ++++++||++|.|+.++.
T Consensus 125 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 158 (168)
T 1u8z_A 125 R--QVS----VEEAKNRADQWN------VNYVETSAKTRANVDKVF 158 (168)
T ss_dssp C--CSC----HHHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred C--ccC----HHHHHHHHHHcC------CeEEEeCCCCCCCHHHHH
Confidence 1 111 122333444443 479999999999999853
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=8.4e-17 Score=141.47 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+... .... .. ...+... .....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~------------------------~~---~~~~~~~-~~~~~~~~~~~ 51 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------CD---PTIEDSY-RKQVVIDGETC 51 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSS--CCSC------------------------CC---TTCCEEE-EEEEEETTEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCc--Cccc------------------------cC---CccceEE-EEEEEECCEEE
Confidence 35799999999999999999996321 1100 00 0001111 11111222245
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~~~ 199 (476)
.+.++||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+... ++| +++++||+|+....
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~ 124 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART 124 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc
Confidence 68999999999998888888999999999999986531 1 1223333333332 677 89999999985422
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... +.+..+.+..+ ++++++||++|.|+.++.
T Consensus 125 ~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 125 VES-------RQAQDLARSYG------IPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp SCH-------HHHHHHHHHHT------CCEEEECTTTCTTHHHHH
T ss_pred cCH-------HHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 222 22333444444 479999999999998853
No 82
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.72 E-value=2.6e-17 Score=146.02 Aligned_cols=146 Identities=23% Similarity=0.277 Sum_probs=94.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+... .. .....++|++.....+...+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~--~~-----------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGEN--VY-----------------------------IGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCS--SS-----------------------------CC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC--ee-----------------------------ccCCCCcceeeeEEEEEECCc
Confidence 35799999999999999999995211 00 001234455444455666788
Q ss_pred EEEEEeCCCCcChH------HHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 124 RFTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.++||||+.+|. ......+ ..+|++++|+|+... ......+..+...++| +++|.||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 99999999998874 1122233 379999999999763 1233344455556888 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.... ... .+...+.+.++ ++++++||++|.|+.++
T Consensus 121 ~~~~----~~~---~~~~~~~~~~~------~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 121 AKSL----GIE---IDVDKLEKILG------VKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HHHT----TCC---CCHHHHHHHHT------SCEEECBGGGTBSHHHH
T ss_pred cccc----Chh---hHHHHHHHHhC------CCEEEEEcCCCCCHHHH
Confidence 3110 000 01222333333 37999999999999985
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.5e-18 Score=153.98 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=106.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.+....++|+++|++|+|||||+++|+...-.. ......|.+.......+.
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 68 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRH 68 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEET
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEEC
Confidence 334567899999999999999999996422100 000112333433334444
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 196 (476)
.....+.|+||||+..|...+...+..+|++|+|+|+.+... | ......+..+.. .++| +++|+||+|+.
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 141 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ-VILVGNKCDME 141 (191)
T ss_dssp TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 567889999999999999999899999999999999987532 1 123344444444 3566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... .. ..++...+....+ ++++++||++|.|+.++++
T Consensus 142 ~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 142 EER--VV----PTEKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp GGC--CS----CHHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred ccc--cc----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 321 10 1122333444443 4799999999999998643
No 84
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.72 E-value=3.3e-17 Score=148.99 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+... ... ......|.|....... . +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~t~~~~~~~--~-~ 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRK--NLA---------------------------RTSSKPGKTQTLNFYI--I-N 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEE--E-T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--Ccc---------------------------ccCCCCCceeeEEEEE--E-C
Confidence 456899999999999999999996321 000 0001223343333222 2 3
Q ss_pred eEEEEEeCCC----------CcChHHHHHHhhhhc---CEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 123 TRFTILDAPG----------HKSYVPNMISGASQA---DIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPG----------h~~~~~~~~~~~~~~---D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
..+.|+|||| +..|...+...+..+ |++++|+|+..+.. ....+.+..+...++| +++|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 140 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIVI 140 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 4799999999 555554444445554 99999999988642 2334455666667888 8999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+||+|+... .......+++...+... ...+++++||++|.|+.++
T Consensus 141 ~nK~Dl~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 141 ATKADKIPK----GKWDKHAKVVRQTLNID-----PEDELILFSSETKKGKDEA 185 (195)
T ss_dssp EECGGGSCG----GGHHHHHHHHHHHHTCC-----TTSEEEECCTTTCTTHHHH
T ss_pred EECcccCCh----HHHHHHHHHHHHHHccc-----CCCceEEEEccCCCCHHHH
Confidence 999999432 12333334444433321 2468999999999999985
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=2.1e-17 Score=148.77 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+. +.+.... ....+.... ....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~--~~~~~~~---------------------------~~t~~~~~~-~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT--NAFPGEY---------------------------IPTVFDNYS-ANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH--SSCCSSC---------------------------CCCSCCEEE-EEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc--CCCCCCc---------------------------CCcccceeE-EEEEECCEE
Confidence 4578999999999999999999953 2111100 000111111 111122233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... + .... ..+..+... ++| +++|+||+|+....
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHHHhCCCCC-EEEEeEcccccccc
Confidence 567899999999998777778889999999999987532 1 1112 233334433 677 89999999984321
Q ss_pred chHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
...+.+++ ...+...+.+..++ .+++++||++|.|+.++
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 126 DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 170 (186)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHH
Confidence 11111100 11223334444432 38999999999999985
No 86
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.71 E-value=2.8e-17 Score=149.08 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+++|+..... ......|.|...... ..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~t~~~~~~---~~~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA------------------------------FVSKTPGKTRSINFY---LVN 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS------------------------------CCCSSCCCCCCEEEE---EET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc------------------------------cccCCCCCccCeEEE---EEC
Confidence 45679999999999999999999632200 000112333332221 224
Q ss_pred eEEEEEeCCC----------CcChHHH---HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011836 123 TRFTILDAPG----------HKSYVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPG----------h~~~~~~---~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 189 (476)
..+.++|||| +..|... ..+....+|++++|+|+..+.. ......+..+...++| +++|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 139 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTIV 139 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 5788999999 3334333 3334455699999999987642 3445556677778888 8999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+||+|+... ...+...+++...+...+ .++++++||++|.|+.++.
T Consensus 140 ~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 140 LTKMDKVKM----SERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp EECGGGSCG----GGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHH
T ss_pred EEChhcCCh----HHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHH
Confidence 999999432 234455566666666543 3589999999999999853
No 87
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=3.3e-17 Score=148.37 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=101.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee-eEEEEe
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~ 120 (476)
....++|+++|++|+|||||+++|+.. .... +....+..+.. ...+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 56 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG--KFNS-----------------------------KFITTVGIDFREKRVVYR 56 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS--CCCC-----------------------------SCCCCCSEEEEEEEEEEC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC--CCCc-----------------------------CcccccceeeeeEEEEEe
Confidence 345789999999999999999999632 1110 00111112221 112222
Q ss_pred C-----------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCce
Q 011836 121 E-----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 185 (476)
Q Consensus 121 ~-----------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~ 185 (476)
. ...+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+.. .++|
T Consensus 57 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 57 ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS---F---LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSSSSSCC-
T ss_pred cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-
Confidence 2 4689999999999999999999999999999999987642 1 122334443333 3667
Q ss_pred EEEEEeeccCCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 186 LLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 ~ivviNK~D~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+++|+||+|+.... ... +.+..+....+ ++++++||++|.|+.++.+
T Consensus 130 iilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVKE-------EEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcccccccccCH-------HHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 89999999984311 111 22333444444 4799999999999998643
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=5.8e-17 Score=149.90 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=93.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
++.++|+++|++|+|||||+++|+... ... ...++......+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 50 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD--------------------------------TQTSITDSSAIYKVNN 50 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC--CCC--------------------------------BCCCCSCEEEEEECSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--ccc--------------------------------ccCCcceeeEEEEecC
Confidence 456899999999999999999996321 110 001111122224444
Q ss_pred --CeEEEEEeCCCCcChHH-HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH-HH-----HcCCceEEEEEee
Q 011836 122 --TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK-----TLGVTKLLLVVNK 192 (476)
Q Consensus 122 --~~~~~liDtPGh~~~~~-~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~-~~-----~~~ip~~ivviNK 192 (476)
...+.|+||||+.+|.. .+...++.+|++|+|+|+.... ..+ ....+.+.. +. ..++| +++|+||
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 124 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--REV---KDVAEFLYQVLIDSMALKNSPS-LLIACNK 124 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHTSTTCCE-EEEEEEC
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--HHH---HHHHHHHHHHHhhhhhcccCCC-EEEEEEC
Confidence 57899999999999987 4555688999999999998621 000 011222221 11 12566 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHh---------------------cC-----CCc---cCCeeEEEeecccC------
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV---KKDVQFLPISGLMG------ 237 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~---------------------~g-----~~~---~~~~~iipiSa~~g------ 237 (476)
+|+...... +++.+.+...+.. .+ |.. ...++++++||++|
T Consensus 125 ~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~ 200 (214)
T 2fh5_B 125 QDIAMAKSA----KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGS 200 (214)
T ss_dssp TTSTTCCCH----HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------C
T ss_pred CCCCCcccH----HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccc
Confidence 999644322 2333333333331 00 000 01678999999999
Q ss_pred cccccc
Q 011836 238 LNMKTR 243 (476)
Q Consensus 238 ~~i~~~ 243 (476)
.|+.++
T Consensus 201 ~gv~~l 206 (214)
T 2fh5_B 201 ADIQDL 206 (214)
T ss_dssp CBCHHH
T ss_pred cChHHH
Confidence 999884
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.71 E-value=2.8e-17 Score=148.41 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=100.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+... .. ....|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD--------------------------------TISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS--------------------------------SCCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC--------------------------------cccccCccceEEEEECC
Confidence 456999999999999999999995311 00 00112222233455678
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888899999999999987631 1 122333333322 3566 8999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. . .+++.+ .+...... ...++++++||++|.|+.++.
T Consensus 135 ~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 135 L-S---CNAIQE----ALELDSIR-SHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp C-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHH----HhChhhcc-CCceEEEEeeCCCCCCHHHHH
Confidence 1 1 122222 22111111 125689999999999999853
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.71 E-value=2.6e-17 Score=145.37 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=97.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|+. +..... . ....+.... ....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~--~~~~~~------------------------~---~~t~~~~~~-~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------Y---DPTIEDSYR-KQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH--CCCCCS------------------------C---CCCSEEEEE-EEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCCC------------------------C---CCCccceEE-EEEEECCEEE
Confidence 458999999999999999999963 211100 0 000111111 1112223356
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 199 (476)
.+.|+||||+.+|...+...+..+|++++|+|+.+... ++ .....+..+.. .++| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 79999999999999888888999999999999987531 11 22223322222 3677 89999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+. ..+++..+.+.++ ..+++++||++|.|+.++
T Consensus 125 --~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 125 --VV----GKEQGQNLARQWC-----NCAFLESSAKSKINVNEI 157 (167)
T ss_dssp --CS----CHHHHHHHHHHTT-----SCEEEECBTTTTBSHHHH
T ss_pred --cC----CHHHHHHHHHHcc-----CCcEEEecCCCCCCHHHH
Confidence 10 0122333344431 358999999999999985
No 91
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=4.1e-17 Score=149.51 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=102.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.. .... ......|.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD--SFTP---------------------------AFVSTVGIDFKVKTIYRNDKR 56 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC--CCCS---------------------------CCCCCCSEEEEEEEEEETTEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC---------------------------CcCCccceeEEEEEEEECCeE
Confidence 34689999999999999999999531 1110 000122334433333333345
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+.. .++| +++|+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 689999999999999888888999999999999987532 1 122333344443 2566 89999999995321
Q ss_pred -chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... +.+..+...++ ++++++||++|.|+.++++
T Consensus 130 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 130 VVSS-------ERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp CSCH-------HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred ccCH-------HHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 111 22333444444 4799999999999998644
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.71 E-value=4e-17 Score=148.41 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=99.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|... .+. ....|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND--RLA--------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS--CCC--------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------ccccCCCCCeEEEEECC
Confidence 44579999999999999999999531 110 01122222334566778
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...++.+|++++|+|+.+... |+ .....+..+.. .+.| +++|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---FD---EARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---HH---HHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999998777778889999999999997631 11 22233333322 4567 8999999999542
Q ss_pred CchHHHHHHHHHHHHHHHHhcC------CCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASG------YNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+. +++...+.... +.....++++++||++|.|+.++
T Consensus 140 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 140 -VSE-------AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp -CCH-------HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred -CCH-------HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 122 22223332211 00012568999999999999884
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=9.4e-17 Score=146.18 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=96.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++..+|+++|++|+|||||+++|+. +.+. . ...|+......++..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~----------------------------~----~~~t~~~~~~~~~~~ 71 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL--GEIV----------------------------T----TIPTIGFNVETVEYK 71 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS--SCCE----------------------------E----EEEETTEEEEEEEET
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh--CCcc----------------------------c----cCCcCceeEEEEEEC
Confidence 45668999999999999999999842 1110 0 011222333446667
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 197 (476)
+..+.|+||||+.+|...+...+..+|++++|+|+.+... | ....+.+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 8999999999999998888888899999999999987631 1 122333333322 2566 899999999953
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. . .+++.+ .+...... ...++++++||++|.|+.++
T Consensus 145 ~~-~---~~~i~~----~~~~~~~~-~~~~~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 145 AM-P---VSELTD----KLGLQHLR-SRTWYVQATCATQGTGLYDG 181 (192)
T ss_dssp CC-C---HHHHHH----HTTGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred CC-C---HHHHHH----HhCccccc-CCceEEEECcCCCcCCHHHH
Confidence 31 1 122222 22111111 12468999999999999985
No 94
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=8.1e-18 Score=170.97 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=105.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+..... ..+...|+|++.....++..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~ 80 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVS------------------------------IVSDYAGTTTDPVYKSMELH 80 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEET
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCC------------------------------ccCCCCCeeeeeEEEEEEEC
Confidence 345689999999999999999998532110 12234677888877777776
Q ss_pred Ce-EEEEEeCCCCcCh-------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 122 TT-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 122 ~~-~~~liDtPGh~~~-------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
+. .++|||||||.+| ...+...+..+|++|+|+|+ +.. .++.+.+..+...++| +|+|+||+
T Consensus 81 ~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~-------~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 81 PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APT-------PYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCC-------HHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CCh-------HHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 65 9999999999876 34466778899999999999 332 5788888999999998 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+...... +....+...+ +++++++||++|.|+.++
T Consensus 151 Dl~~~~~~--------~~~~~l~~~~------g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 151 DVLGEKAE--------ELKGLYESRY------EAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp TTTTCCCT--------HHHHHSSCCT------TCCCCCCSSCCTTSTTTH
T ss_pred CCCCccHH--------HHHHHHHHHc------CCCEEEEECCCCCCHHHH
Confidence 99654321 1122222232 357999999999999985
No 95
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.2e-17 Score=150.64 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=102.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|.+|+|||||+++|+.. .... +....++.+.....+..
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~ 70 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQG--LFPP-----------------------------GQGATIGVDFMIKTVEI 70 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHS--SCCT-----------------------------TCCCCCSEEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCccceeEEEEEEEE
Confidence 3455789999999999999999999532 1110 01122233333334444
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccC
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~ 195 (476)
++ ..+.|+||||+.+|...+...++.+|++|+|+|+.+... |+ .....+..+.. .++| +++|+||+|+
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 143 (201)
T 2ew1_A 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVI-TVLVGNKIDL 143 (201)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 44 579999999999999888888999999999999987532 11 22333343433 2566 8899999998
Q ss_pred CCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.... ... ++...+....+ ++++++||++|.|+.++++
T Consensus 144 ~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 144 AERREVSQ-------QRAEEFSEAQD------MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GGGCSSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 4211 111 12223333433 4799999999999998643
No 96
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=2.7e-17 Score=149.43 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=101.5
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|++|+|||||+++|+... .... .....|.+.......+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~ 66 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV---------------------------HDLTIGVEFGARMVNID 66 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSC--CCC--------------------------------CCSSEEEEEEEET
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCC--CCCC---------------------------CCCcccceeEEEEEEEC
Confidence 344567999999999999999999996321 1100 00112222222222222
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
.....+.|+||||+.+|...+...++.+|++|+|+|+.+... + ......+..+... ++| +++|+||+|+.
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 223689999999999998878888899999999999987532 1 1233444444433 566 89999999984
Q ss_pred CCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... ... ++...+....+ ++++++||++|.|+.++++
T Consensus 140 ~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 140 SRRDVKR-------EEGEAFAREHG------LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp GGCCSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred CccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 111 22233444443 4799999999999998643
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=1.8e-16 Score=142.91 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=98.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|... .+. ......|. ....+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------------------------~~~~t~g~----~~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------------------------HITPTQGF----NIKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------------------------EEEEETTE----EEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------------------------cccCcCCe----EEEEEEECC
Confidence 45689999999999999999998421 000 00011222 223455668
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+..|...+...+..+|++++|+|+.+... | ....+.+..+. ..++| +++|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 899999999999999888888999999999999987531 1 12223332221 13567 8999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. . .+++.+ .+...... ...++++++||++|.|+.++
T Consensus 133 ~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 133 A-P---ASEIAE----GLNLHTIR-DRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp C-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred C-C---HHHHHH----HhCchhcc-CCceEEEEccCCCCCCHHHH
Confidence 2 1 112222 22111111 12468999999999999985
No 98
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=9.7e-18 Score=153.71 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=98.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|.+|+|||||+++|+... ... +....++.+.....+..+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 70 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENK--FKQ-----------------------------DSNHTIGVEFGSRVVNVG 70 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCC--CCc-----------------------------cCCCcccceeEEEEEEEC
Confidence 3457999999999999999999995321 100 001112222222333344
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+.. .++| +++|+||+|+.
T Consensus 71 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 4 689999999999888777788899999999999987632 1 122333333333 3566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... .... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 144 ~~~--~v~~----~~~~~~~~~~~------~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 144 PER--EVTF----LEASRFAQENE------LMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GGC--CSCH----HHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 1001 22233444443 5899999999999998644
No 99
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.71 E-value=4.1e-17 Score=149.77 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=99.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|++|+|||||+++|+.... .. .....++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKF--SN-----------------------------QYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC--CS-----------------------------SCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCC--CC-----------------------------CCCCcccceEEEEEEEEC
Confidence 45678999999999999999999963211 00 001222233333333333
Q ss_pred --CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEee
Q 011836 122 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 192 (476)
Q Consensus 122 --~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivviNK 192 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... +. .....+..+.. .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---FK---TLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 4689999999999998877788899999999999987642 11 12222222221 3667 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|+....... +.+..+.... ..++++++||++|.|+.++++
T Consensus 127 ~Dl~~~~~~~-------~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 127 IDLENRQVAT-------KRAQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TTSSCCCSCH-------HHHHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCCcccccCH-------HHHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 9995322222 1222233311 145899999999999998644
No 100
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=147.42 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=100.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+... +... . ....+.+. ...+..
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~~ 57 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSY---RKKVVL 57 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCTT------------------------C---CTTCCEEE---EEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------C---CCccceEE---EEEEEE
Confidence 34567999999999999999999996321 1100 0 00111111 122333
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeecc
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 194 (476)
++ ..+.|+||||+.+|...+...+..+|++++|+|+.+... |. .....+..+.. .++| +++|+||+|
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSD 130 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTT
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEeccC
Confidence 33 579999999999999988888999999999999987531 11 22223333332 2677 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... +... +++..++...+ ++++++||++|.|+.++++
T Consensus 131 l~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 131 LEDKR--QVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp CGGGC--CSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccccc--cccH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 84321 1111 23333444443 4799999999999998644
No 101
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.70 E-value=1.9e-17 Score=148.19 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=98.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+.. .... +. ....+.... ..+..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~--~~~~------------------------~~---~~t~~~~~~---~~~~~ 52 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQS--YFVS------------------------DY---DPTIEDSYT---KICSV 52 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHS--SCCS------------------------SC---CTTCCEEEE---EEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhC--cCcc------------------------cc---CCCcCceEE---EEEEE
Confidence 3456789999999999999999999642 1110 00 001112211 22334
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEeecc
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D 194 (476)
++ ..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+ . ..++| +++|+||+|
T Consensus 53 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 125 (181)
T 2fn4_A 53 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDFP-VVLVGNKAD 125 (181)
T ss_dssp TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCCC-EEEEEECGG
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 43 578999999999998888888899999999999987531 1 1122222222 2 23677 899999999
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... ... .+...+.... .++++++||++|.|+.++.+
T Consensus 126 l~~~~~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 126 LESQRQVPR-------SEASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGGCCSCH-------HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred cccccccCH-------HHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 84321 111 1222233333 35899999999999998644
No 102
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=1.7e-17 Score=158.60 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=101.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+........ ...+++|.......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeC
Confidence 345689999999999999999999743321110 011225555555567788
Q ss_pred CeEEEEEeCCCCcCh-----------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCce
Q 011836 122 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTK 185 (476)
Q Consensus 122 ~~~~~liDtPGh~~~-----------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~ 185 (476)
++.++|+||||+.++ ...+..+++.+|++|+|+|+.. + ..+....+..+... +.|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--Y------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--C------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--C------CHHHHHHHHHHHHHhCchhhcc-
Confidence 999999999998765 2233345678999999999985 2 13555555555554 566
Q ss_pred EEEEEe-eccCCCCCchHHHHHH-HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 186 LLLVVN-KMDDHTVNWSKERYDE-IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 ~ivviN-K~D~~~~~~~~~~~~~-~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.|+++| |+|+.+.+... .+.. ....+..++..++.... .+..+++||++|.|+.++++
T Consensus 141 ~i~vv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGSLMD-YMHDSDNKALSKLVAACGGRIC-AFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCCHHH-HHHHCCCHHHHHHHHHTTTCEE-ECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCccHHH-HHHhcchHHHHHHHHHhCCeEE-EecCcccccccHHHHHHHHH
Confidence 566777 99995432111 0000 00223334444432100 00118999999999998643
No 103
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.70 E-value=1.2e-17 Score=148.01 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|++|+|||||+++|+.. ..... .....+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~ 54 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN--KFNDK---------------------------HITTLGASFLTKKLNIGGKR 54 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC--CCCSS---------------------------CCCCCSCEEEEEEEESSSCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC--CCCcC---------------------------CCCccceEEEEEEEEECCEE
Confidence 34689999999999999999999632 11100 00111222222222222233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .++| +++|+||+|+....
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 127 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKER 127 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGC
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccccc
Confidence 578999999999998887778899999999999987532 1 122223333322 4566 89999999984321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.. .++...+.+..+ ++++++||++|.|+.++.
T Consensus 128 --~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 128 --HVS----IQEAESYAESVG------AKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp --CSC----HHHHHHHHHHTT------CEEEEEBTTTTBSHHHHH
T ss_pred --ccC----HHHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Confidence 101 122333444443 479999999999999853
No 104
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.6e-16 Score=140.73 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=95.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|+. +..... . ....+.+.. ....+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~--~~~~~~------------------------~---~~t~~~~~~-~~~~~~~~~~~ 52 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK--GTFRES------------------------Y---IPTVEDTYR-QVISCDKSICT 52 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT--CCCCSS------------------------C---CCCSCEEEE-EEEEETTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCCC------------------------C---CCCccccEE-EEEEECCEEEE
Confidence 57999999999999999999953 111100 0 000111111 11112223457
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCCCC
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~~~ 199 (476)
+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .++| +++|+||+|+....
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSR 125 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGC
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCCC-EEEEEEcccccccc
Confidence 8999999999999888888999999999999987532 1 123334433333 2577 89999999984321
Q ss_pred -chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .+...+....+ ++++++||++|.|+.++
T Consensus 126 ~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 126 EVQS-------SEAEALARTWK------CAFMETSAKLNHNVKEL 157 (172)
T ss_dssp CSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHH
T ss_pred ccCH-------HHHHHHHHHhC------CeEEEecCCCCcCHHHH
Confidence 111 11222333333 47999999999999984
No 105
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=4.2e-17 Score=146.68 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+.. .... +. ....+... ...+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~------------------------~~---~~t~~~~~---~~~~~~ 61 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQK--IFVD------------------------DY---DPTIEDSY---LKHTEI 61 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHS--CCCS------------------------CC---CTTCCEEE---EEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhC--CCCC------------------------CC---CCCcccee---EEEEEe
Confidence 4456799999999999999999999632 1110 00 00111111 222333
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEeecc
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D 194 (476)
++ ..+.|+||||+.+|.......++.+|++++|+|+.+... |. .....+..+ ...++| +++|+||+|
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 134 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVD 134 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTT
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCC
Confidence 33 456779999999998888888999999999999998632 11 122222222 224677 899999999
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecc-cCccccccc
Q 011836 195 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~~i~~~~ 244 (476)
+.... ... ++...+.+.++ ++++++||+ +|.|+.+++
T Consensus 135 l~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 135 LMHLRKVTR-------DQGKEMATKYN------IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp CSTTCCSCH-------HHHHHHHHHHT------CCEEEEBCSSSCBSHHHHH
T ss_pred chhccCcCH-------HHHHHHHHHhC------CeEEEeccCCCCCCHHHHH
Confidence 84311 111 22333444444 479999999 999999863
No 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=8.6e-17 Score=144.71 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+... +... . ....+.+. ...+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~~ 61 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSY---RKKVVL 61 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSC--CCCS------------------------C---CTTCCEEE---EEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCCc------------------------C---CCccceEE---EEEEEE
Confidence 34567999999999999999999996321 1100 0 00111111 122233
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeecc
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 194 (476)
.+ ..+.|+||||+.+|...+...+..+|++++|+|+.+... +. .....+..+.. .++| +++|+||+|
T Consensus 62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 134 (187)
T 2a9k_A 62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSD 134 (187)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTCC-EEEEEECGG
T ss_pred CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 33 579999999999999988889999999999999987531 11 12222222222 2677 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... +. ..+++..+++..+ ++++++||++|.|+.++.+
T Consensus 135 l~~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 135 LEDKR--QV----SVEEAKNRAEQWN------VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp GGGGC--CS----CHHHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred ccccC--cc----CHHHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 84321 11 1123334445443 4799999999999998643
No 107
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=145.33 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=90.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+...- . ......|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQE--R----------------------------DLHEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCC--c----------------------------cccCccccceeEEEEEECCEE
Confidence 3568999999999999999999952110 0 000123344333222232233
Q ss_pred eEEEEEeCCCCcCh--HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCC
Q 011836 123 TRFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 ~~~~liDtPGh~~~--~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~ 196 (476)
..+.++||||+..+ .......++.+|++++|+|+.+... |+ ...+.+..+... ++| +++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---FE---SASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---HH---HHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 57899999999884 3333445678999999999987531 11 223333334443 677 89999999995
Q ss_pred CCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... .+. ++...+....+ ++++++||++|.|+.++.+
T Consensus 125 ~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 125 RCREVSV-------EEGRACAVVFD------CKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TTCCSCH-------HHHHHHHHHHT------SEEEECBTTTTBSHHHHHH
T ss_pred cccccCH-------HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 321 111 12222333333 4799999999999998643
No 108
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.70 E-value=3.6e-17 Score=144.57 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+++|++|+|||||+++|+.. ..... .....+.+. ....+..+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~~---------------------------~~~t~~~~~--~~~~~~~~~ 51 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG--IFTKD---------------------------YKKTIGVDF--LERQIQVND 51 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC--CCCCC---------------------------SSCCCSSSE--EEEEEEETT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC--CCCCC---------------------------CCCceEEEE--EEEEEEECC
Confidence 34689999999999999999999631 11100 000111222 22223333
Q ss_pred -CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCC
Q 011836 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 -~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .+.| +++|+||+|+...
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 4589999999999998877888899999999999987532 1 122333333322 3677 8999999998432
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. +. ..+++..+.+..+ ++++++||++|.|+.++.
T Consensus 125 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 125 S--CI----KNEEAEGLAKRLK------LRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp C--SS----CHHHHHHHHHHHT------CEEEECBTTTTBSSHHHH
T ss_pred c--cc----CHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Confidence 1 10 0122333444444 479999999999999853
No 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.70 E-value=8.1e-17 Score=147.40 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|.. +.+. ....|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD--DRLG--------------------------------QHVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC--C--------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------ccCCCCCceeEEEEECC
Confidence 3457899999999999999999842 1110 00112222334566677
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...++.+|++++|+|+.+... | ......+..+.. .++| +++|+||+|+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 999999999999988777778899999999999987531 1 122333333322 3677 8999999999542
Q ss_pred CchHHHHHHHHHHHHHHHHhcC---------CC--ccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASG---------YN--VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g---------~~--~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+.+ ++...+.... +. ....++++++||++|.|+.++
T Consensus 142 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 142 -ISEE-------RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp -CCHH-------HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred -CCHH-------HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 1222 2223332211 10 012468999999999999884
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=2.7e-17 Score=147.35 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=88.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++..+|+++|++|+|||||+++|+... ... .....++.+.....+...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDK--YSQ-----------------------------QYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSC--CCT-----------------------------TC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCc--CCc-----------------------------ccCCccceEEEEEEEEEc
Confidence 4567999999999999999999996321 110 001111222222233333
Q ss_pred ---CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEe
Q 011836 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 191 (476)
Q Consensus 122 ---~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivviN 191 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... ++ .....+..+.. .++| +++|+|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---FE---NIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---HH---HHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 4689999999999998888888899999999999987642 11 22222222222 4567 899999
Q ss_pred eccCCCCC--chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~--~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+.... ... +++..+.... ...+++++||++|.|+.++.+
T Consensus 127 K~Dl~~~~~~v~~-------~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 127 KIDAEESKKIVSE-------KSAQELAKSL-----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp CTTSCGGGCCSCH-------HHHHHHHHHT-----TSCCEEEEBTTTTBSHHHHHH
T ss_pred CCccccccccCCH-------HHHHHHHHhc-----CCCeEEEEecCCCCCHHHHHH
Confidence 99984221 111 1222233322 145899999999999998643
No 111
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.70 E-value=5.6e-17 Score=149.14 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=99.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.++.++|+++|++|+|||||+++|+. +.+... ....+.+.....+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT--NAFPGE------------------------------YIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH--SCCCC-------------------------------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh--CCCCCC------------------------------cCCeecceeEEEEEEC
Confidence 35578999999999999999999953 211110 011111121222233
Q ss_pred -CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCC
Q 011836 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 -~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~ 196 (476)
....+.|+||||+.+|...+...+..+|++++|+|+.+... +. ... ..+..+... ++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 34566799999999998888888899999999999997632 11 111 233344444 677 89999999984
Q ss_pred CCCchHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
......+..++ ..++...+.+.+++ .+++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 195 (204)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred cchhhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHH
Confidence 32111111100 11233445555543 37999999999999985
No 112
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2.5e-17 Score=148.04 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+. +... ....|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEVV--------------------------------TTKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEEE--------------------------------EECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCcC--------------------------------ccCCcCccceEEEEECC
Confidence 5679999999999999999999841 1110 01111122233455677
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999988877788899999999999987531 1 122333333332 4566 8999999999532
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. . . +++...+...... ...++++++||++|.|+.++.
T Consensus 135 ~-~---~----~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 135 L-S---A----SEVSKELNLVELK-DRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp C-C---H----HHHHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHH
T ss_pred C-C---H----HHHHHHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 1 1 1 1222222222111 124689999999999999853
No 113
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=3.7e-16 Score=142.36 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=96.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|++|+|||||+++|+. +...... ....+.+.. ....+.....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~~---------------------------~~t~~~~~~-~~~~~~~~~~ 56 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK--GTFRDTY---------------------------IPTIEDTYR-QVISCDKSVC 56 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH--SCCCCTT---------------------------SCCCCEEEE-EEEEETTEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc--CCCCCcc---------------------------cCcccccee-EEEEECCEEE
Confidence 458999999999999999999963 2111000 000111111 1111222345
Q ss_pred EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEeeccCCCC
Q 011836 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 124 ~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~~ 198 (476)
.+.|+||||+.+|...+...+..+|++++|+|+.+... +. .....+..+.. .++| +++|+||+|+...
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~ 129 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQR 129 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSC
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCcc
Confidence 79999999999999888888999999999999987532 11 22233332322 2567 8999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
....+ ....+...++ ++++++||++|.|+.++
T Consensus 130 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 130 EVDTR-------EAQAVAQEWK------CAFMETSAKMNYNVKEL 161 (199)
T ss_dssp SSCHH-------HHHHHHHHHT------CEEEECBTTTTBSHHHH
T ss_pred ccCHH-------HHHHHHHHhC------CeEEEEecCCCCCHHHH
Confidence 22222 2222333443 47999999999999985
No 114
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.69 E-value=1.5e-16 Score=143.99 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=89.2
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.+.++..+|+++|.+|+|||||+++|+... .... . ....+... ...+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~ 63 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------Y---DPTIEDSY---RKQVV 63 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSS--CCSC------------------------C---CTTCCEEE---EEEEE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCC--Cccc------------------------c---CCccceEE---EEEEE
Confidence 344567899999999999999999996321 1100 0 00011111 12233
Q ss_pred eCC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 011836 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~ 193 (476)
..+ ..+.|+||||+.+|...+...+..+|++++|+|+.+... + ......+..+.. .++| +++|+||+
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~ 136 (190)
T 3con_A 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDVP-MVLVGNKC 136 (190)
T ss_dssp ETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCe-EEEEEECC
Confidence 333 568999999999998888888999999999999987532 1 122223333332 2677 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+....... +++..+.+..+ ++++++||++|.|+.++.+
T Consensus 137 Dl~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 137 DLPTRTVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp TCSCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cCCcccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 985422222 22333444444 4799999999999998643
No 115
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=1.9e-17 Score=170.16 Aligned_cols=145 Identities=22% Similarity=0.280 Sum_probs=96.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|+...-.+ .+...|+|.+.....+++.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCce
Confidence 3689999999999999999995321110 1124678888877788888899
Q ss_pred EEEEeCCCCc--------ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 125 FTILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~--------~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
+.|+||||+. .|...+..++..+|++|+|+|+..+.. ....+....++..+.| +++|+||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCc
Confidence 9999999985 566667778899999999999998853 3445555666667888 89999999983
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... ..+..+ ..+|+. +++++||++|.|+.++
T Consensus 125 ~~~----------~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 125 EMR----------ANIYDF-YSLGFG-----EPYPISGTHGLGLGDL 155 (436)
T ss_dssp --------------CCCSS-GGGSSC-----CCEECBTTTTBTHHHH
T ss_pred cch----------hhHHHH-HHcCCC-----CeEEEeCcCCCChHHH
Confidence 210 111112 234442 6899999999999985
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=3.7e-17 Score=148.09 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=99.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+. +.... ...|+......+...+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVVT--------------------------------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCCC--------------------------------cCCCCceEEEEEEECC
Confidence 4578999999999999999999831 11100 0011112233455678
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|+.+... + ....+.+..+.. .+.| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999988777777889999999999987531 1 122333333322 2566 8999999999543
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
. . .+++.+ .+...... ...++++++||++|.|+.++.
T Consensus 139 ~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 139 A-S---EAEIAE----QLGVSSIM-NRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp C-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHH----HhChhhcc-CCceEEEEccCCCccCHHHHH
Confidence 2 1 112222 22111111 124689999999999999853
No 117
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=2.2e-17 Score=148.22 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=96.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+... ... +. ....+.+. ...+..++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVD------------------------SY---DPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCS------------------------CC---CTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCC------------------------CC---CCCccccE---EEEEEECC
Confidence 457899999999999999999996321 110 00 01122222 22233333
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEeeccCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~ 196 (476)
..+.|+||||+.+|.......++.+|++++|+|+.+... ++ .....+..+ ...++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 678999999999997767777889999999999987432 11 112222222 223677 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... .. ..++...+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MER--VI----SYEEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTC--CS----CHHHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred hcc--ee----cHHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 321 11 1123333445543 4799999999999998643
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=6.5e-17 Score=146.52 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=95.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+.. .... .....++.+.....+..
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~ 64 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAG--RFPD-----------------------------RTEATIGVDFRERAVDI 64 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS--SCCS-----------------------------SCCCCCSCCEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCCcceEEEEEEEEE
Confidence 3456799999999999999999999532 1110 00111222222223334
Q ss_pred CC--eEEEEEeCCCCcChH-HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 011836 121 ET--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~-~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~ 193 (476)
++ ..+.|+||||+.+|. ..+...++.+|++|+|+|+.+... +. .....+..+.. .++| +++|+||+
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FH---SLPAWIEECKQHLLANDIP-RILVGNKC 137 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHCCCSCCC-EEEEEECT
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 43 689999999999988 666777889999999999987532 11 22223333322 3567 89999999
Q ss_pred cCCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccC---cccccc
Q 011836 194 DDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 243 (476)
Q Consensus 194 D~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g---~~i~~~ 243 (476)
|+.... ... +....+....+ ++++++||++| .|+.++
T Consensus 138 Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 138 DLRSAIQVPT-------DLAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp TCGGGCCSCH-------HHHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred cccccceeCH-------HHHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 984321 111 22233444443 47999999999 777663
No 119
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.69 E-value=7.4e-17 Score=148.26 Aligned_cols=152 Identities=19% Similarity=0.149 Sum_probs=100.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.. .... +....++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD--TYTN-----------------------------DYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC--CCCT-----------------------------TCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCcccceeEEEEEEECC
Confidence 44689999999999999999999532 1110 0112222222223344443
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+.+|...+...+..+|++|+|+|+..... + ......+..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 589999999999998888888899999999999987632 1 122233333333 2466 899999999953
Q ss_pred CC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.. ... +....+....+ ++++++||++|.|+.++.+
T Consensus 128 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KRVVEY-------DVAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TCCSCH-------HHHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 111 12223344443 4799999999999998644
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=3.6e-17 Score=149.93 Aligned_cols=156 Identities=17% Similarity=0.078 Sum_probs=97.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|.+|+|||||+++|+... ... +. ....+.+. .....+..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~-~~~~~~~~ 69 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGE--FSE------------------------GY---DPTVENTY-SKIVTLGK 69 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSC--CCS------------------------CC---CCCSEEEE-EEEEC---
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCC--CCC------------------------CC---CCccceEE-EEEEEECC
Confidence 34567999999999999999999996321 110 00 00111122 22222334
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 196 (476)
....+.|+||||+.+|...+...+..+|++|+|+|+.+... | ......+..+.. .++| +++|+||+|+.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---F---QVIESLYQKLHEGHGKTRVP-VVLVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---H---HHHHHHHHHHHC-----CCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCc
Confidence 56789999999999998888888899999999999987532 1 122223333322 2677 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
... +... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 143 ~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 143 PER--EVQA----VEGKKLAESWG------ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEECCTTCHHHHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 321 1001 12233344443 4799999999999998644
No 121
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.68 E-value=2.3e-16 Score=154.56 Aligned_cols=161 Identities=13% Similarity=0.185 Sum_probs=106.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-CCe
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~ 123 (476)
..+|+++|.+|+|||||+++|+..... ......+.|++.....+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~------------------------------~~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA------------------------------FDTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT------------------------------GGGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC------------------------------ccccCcCCccceEEEEEEeCCce
Confidence 479999999999999999998532111 1112356677666666654 578
Q ss_pred EEEEEeCCCCcChH-----HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCC
Q 011836 124 RFTILDAPGHKSYV-----PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 124 ~~~liDtPGh~~~~-----~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~ 196 (476)
.+.|+||||+.+|. ......++.+|++|+|+|+.+... ++......+.+..+... ++| +++|+||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 99999999999984 344455678999999999988632 11000111122222222 677 99999999994
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..+..++.++....++..+.+.+|+. .++++++||++ .|+.+.
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 32122222334556777778777753 46899999999 666654
No 122
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=1e-16 Score=148.49 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=98.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+. +... .+....++.+.....+...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 70 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD--NKFN-----------------------------PKFITTVGIDFREKRVVYN 70 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC--SCCC-----------------------------CEEEEEEEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc--CCCC-----------------------------cCCCCceeEEEEEEEEEEC
Confidence 34568999999999999999999952 1110 0001112222222222222
Q ss_pred ------------CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCce
Q 011836 122 ------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 185 (476)
Q Consensus 122 ------------~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~ 185 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... + ......+..+.. .++|
T Consensus 71 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~~p- 143 (217)
T 2f7s_A 71 AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS---F---LNVRNWMSQLQANAYCENPD- 143 (217)
T ss_dssp C-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH---H---HHHHHHHHTCCCCCTTTCCE-
T ss_pred CccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCC-
Confidence 5689999999999999888889999999999999987531 0 011222222211 3455
Q ss_pred EEEEEeeccCCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 186 LLLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 ~ivviNK~D~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+++|+||+|+.... ... .++..+....+ ++++++||++|.|+.++++
T Consensus 144 iilV~NK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 144 IVLIGNKADLPDQREVNE-------RQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred EEEEEECCccccccccCH-------HHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 89999999984321 111 23333444444 4799999999999998644
No 123
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=158.03 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=97.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++|+|||||+++|+. +.+. ....|+......++..
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~--~~~~--------------------------------~~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS--SCCE--------------------------------EEEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC--CCCC--------------------------------CcccccceEEEEEecC
Confidence 34567999999999999999999832 1110 0012444445567778
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH-HHHHHc---CCceEEEEEeeccCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l-~~~~~~---~ip~~ivviNK~D~~~ 197 (476)
+..+.|+||||+.+|...+...+..+|++|+|+|+.+... |. ...+.+ .++... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 8999999999999999888888999999999999986421 11 222222 222222 666 899999999954
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.. . .+++.. .+...... ...++++++||++|.|+.+++
T Consensus 281 ~~-~---~~~i~~----~~~~~~~~-~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 281 AM-N---AAEITD----KLGLHSLR-HRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp CC-C---HHHHHH----HHTCTTCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred cc-C---HHHHHH----Hhchhhhh-cCCCEEEEEECCCCcCHHHHH
Confidence 32 1 122222 22111111 235789999999999999853
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=8e-17 Score=145.51 Aligned_cols=148 Identities=24% Similarity=0.280 Sum_probs=100.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+... . ..+...++|.+.....+...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~--~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGEN--V-----------------------------YIGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTC--E-----------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--c-----------------------------cccCCCCeeccceEEEEEeCC
Confidence 456899999999999999999995210 0 011124556666566677788
Q ss_pred eEEEEEeCCCCcChH------HHHHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
..+.++||||+.+|. ......+ ..+|++++|+|+... ......+..+...+.| +++++||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~D 123 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMD 123 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhh
Confidence 999999999998873 1222233 349999999998752 2345555566667888 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+.... .+......+.+.++ ++++++||++|.|+.++.
T Consensus 124 l~~~~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 124 LAKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HHHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHH
T ss_pred ccccc-------cchHHHHHHHHHhC------CCeEEEEecCCCCHHHHH
Confidence 83210 00012223333443 479999999999999853
No 125
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=9.4e-17 Score=141.79 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|+... .. ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~---~~---------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVE---DG---------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcc---cc---------------------------CCCCccccceE-EEEEECCEEEE
Confidence 4789999999999999999984210 00 00011233332 11223334467
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCCC-
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~- 199 (476)
+.++||||+..|.......+..+|++++|+|+.+... | ......+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE 123 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc
Confidence 8999999999998888888899999999999987531 1 122333333333 3677 89999999985321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... +....+.... .++++++||++|.|+.++.
T Consensus 124 ~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 124 VSV-------DEGRACAVVF------DCKFIETSAALHHNVQALF 155 (166)
T ss_dssp SCH-------HHHHHHHHHT------TCEEEECBGGGTBSHHHHH
T ss_pred cCH-------HHHHHHHHHh------CCcEEEeccCCCCCHHHHH
Confidence 111 1122233333 3589999999999999863
No 126
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=8.4e-17 Score=146.33 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=100.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+...+|+++|++|+|||||+++|+.. .+... .. ...+... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~--~~~~~------------------------~~---~t~~~~~---~~~~~~~ 62 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYAND--AFPEE------------------------YV---PTVFDHY---AVSVTVG 62 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHS--SCCCS------------------------CC---CSSCCCE---EEEEESS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------CC---Cccccee---EEEEEEC
Confidence 346789999999999999999999632 11100 00 0011111 1123333
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...++.+|++++|+|+.+... | .... ..+..+... ++| +++|+||+|+.
T Consensus 63 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred CEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 3 678999999999998888888899999999999987531 1 1222 233444444 677 89999999995
Q ss_pred CCCchHHHH------HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~------~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
......+.+ .-..++...+.+.+++ .+++++||++|.|+.++
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTV 183 (194)
T ss_dssp TCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHH
T ss_pred ccccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHH
Confidence 321000000 0012333445555543 27999999999999985
No 127
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.68 E-value=4.8e-17 Score=151.34 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=105.6
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|.+|+|||||+++|+...-. .......|.+.......+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 60 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTN 60 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEET
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEEC
Confidence 34556799999999999999999996421100 0011234556655555555
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeeccCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~ 197 (476)
.....+.|+||||+.+|...+...++.+|++|+|+|+.+... +. .....+..+... ++| +++|+||+|+..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKD 133 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTCC-EEEEEECTTSSS
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCcccc
Confidence 556789999999999998878888899999999999998642 11 222333333332 677 899999999954
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..... +...+.... .++++++||++|.|+.++++
T Consensus 134 ~~~~~--------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 134 RKVKA--------KSIVFHRKK------NLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp CSSCG--------GGCCHHHHH------TCEEEECBGGGTBTTTHHHH
T ss_pred ccccH--------HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 32111 111223333 34799999999999998643
No 128
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.7e-17 Score=150.32 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+... ... +....++.+.....+...+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE--FNM-----------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC--CCC-----------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCcccceeEEEEEEECC
Confidence 456899999999999999999996321 110 0011112222222344444
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+.+|...+...++.+|++|+|+|+..... | ....+.+..+... ++| +++|+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 689999999999998888888899999999999987632 1 1223333344433 566 899999999843
Q ss_pred CC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.. ... ++...+....+ ++++++||++|.|+.+++
T Consensus 133 ~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 133 LRAVPT-------EESKTFAQENQ------LLFTETSALNSENVDKAF 167 (223)
T ss_dssp GCCSCH-------HHHHHHHHHTT------CEEEECCCC-CCCHHHHH
T ss_pred ccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 11 111 22233444443 489999999999999853
No 129
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.67 E-value=9.7e-17 Score=142.17 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=88.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|++|+|||||+++|+....... .....+.+.....+..+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 47899999999999999999953211100 00111222222223333 4
Q ss_pred eEEEEEeCCCCcChHH-HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEeeccCCC
Q 011836 123 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~-~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~ 197 (476)
..+.++||||+.+|.. .....++.+|++++|+|+.+... |. ...+.+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 6788999999998876 34445778999999999987532 21 233333333332 677 899999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.. +. ..++...+.+..+ ++++++||++|.|+.+++
T Consensus 124 ~~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 124 SR--EV----SLEEGRHLAGTLS------CKHIETSAALHHNTRELF 158 (169)
T ss_dssp GC--CS----CHHHHHHHHHHTT------CEEEECBTTTTBSHHHHH
T ss_pred cc--cC----CHHHHHHHHHHcC------CcEEEecCccCCCHHHHH
Confidence 11 11 1122333444443 479999999999999863
No 130
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.67 E-value=7.7e-17 Score=147.76 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=99.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
...++|+++|.+|+|||||+++|+... .... ....++.+.. ..+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~-----------------------------~~~t~~~~~~-~~~~~~~ 70 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FPEV-----------------------------YVPTVFENYI-ADIEVDG 70 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSS--CCSS-----------------------------CCCSSCCCCE-EEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCc--CCcc-----------------------------cCCcccceEE-EEEEECC
Confidence 456899999999999999999996321 1100 0001111110 112333
Q ss_pred -CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccCCC
Q 011836 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~ivviNK~D~~~ 197 (476)
...+.|+||||+.+|...+...+..+|++++|+|+..... +. .. ...+..+... ++| +++|+||+|+..
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGTT
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEecHHhhc
Confidence 3578999999999998887778899999999999987531 11 11 2233444443 777 899999999954
Q ss_pred CCchHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 198 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.....+.+++ ..++...+...+++ .+++++||++|.|+.++.
T Consensus 144 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 144 DEHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVF 191 (201)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred CccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHH
Confidence 3111111100 01233444555443 279999999999999853
No 131
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.67 E-value=1.5e-16 Score=144.82 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=99.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|.+|+|||||+++|+.. .+... . ....+.+... ...+..
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~--~~~~~------------------------~---~~t~~~~~~~-~~~~~~ 68 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKG--EIPTA------------------------Y---VPTVFENFSH-VMKYKN 68 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHS--CCCSS------------------------C---CCCSEEEEEE-EEEETT
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcC--CCCCc------------------------c---CCeeeeeeEE-EEEECC
Confidence 4456799999999999999999999532 11100 0 0011111111 111222
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEeeccCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~ivviNK~D~~~ 197 (476)
....+.|+||||+.+|...+...++.+|++|+|+|+.+... |. .. ...+..+... ++| +++|+||+|+..
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 141 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD---NISTKWEPEIKHYIDTAK-TVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSE-EEEEEECGGGCC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 33567999999999998888888999999999999987532 11 11 2223333333 566 899999999853
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
....+ ...+++..+.+.+++. .++++||++|.|+.+++
T Consensus 142 ~~~~~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 142 DGSDD----VTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVF 179 (194)
T ss_dssp TTTTC----CCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHH
T ss_pred CCCCc----ccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHH
Confidence 21111 1123344455555542 49999999999999863
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.1e-16 Score=145.55 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=99.6
Q ss_pred hhhccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEe
Q 011836 34 SQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV 113 (476)
Q Consensus 34 ~~~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~ 113 (476)
...+.-...+...+|+++|.+|+|||||+++|+... ..... ....+....
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~~- 63 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE--FPEVY---------------------------VPTVFENYV- 63 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS--CC----------------------------------CCEEE-
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcCC--CCCcC---------------------------CCcccceEE-
Confidence 333333344567899999999999999999996321 11000 000111111
Q ss_pred eeEEEEeCC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEE
Q 011836 114 GRAHFETET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLL 188 (476)
Q Consensus 114 ~~~~~~~~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~iv 188 (476)
..+..++ ..+.|+||||+.+|...+...+..+|++|+|+|+..... +. .. ...+..+... ++| +++
T Consensus 64 --~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iil 134 (207)
T 2fv8_A 64 --ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---LE---NIPEKWVPEVKHFCPNVP-IIL 134 (207)
T ss_dssp --EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEE
T ss_pred --EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEE
Confidence 1123333 578999999999998877778899999999999987531 11 11 2233344443 677 899
Q ss_pred EEeeccCCCCCchHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 189 VVNKMDDHTVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+||+|+.......+.+.+ ..++...+....++ .+++++||++|.|+.++.
T Consensus 135 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 191 (207)
T 2fv8_A 135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVF 191 (207)
T ss_dssp EEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred EEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHH
Confidence 9999999432111111110 01122333334432 279999999999999853
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.67 E-value=6.6e-17 Score=149.94 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
....++|+++|.+|+|||||+++|+. +.... ......+.+... ..+..
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~---------------------------~~~~t~~~~~~~--~~~~~~ 56 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD--GRFEK---------------------------NYNATVGAVNHP--VTFLDD 56 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT--CSTTC---------------------------EEETTTTEEEEE--EEEEBT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc--CCCCC---------------------------CCCCccceeeEE--EEEEeC
Confidence 34568999999999999999999842 11100 000111222211 11212
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccC
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~ 195 (476)
.+ ..+.|+||||+.+|.......+..+|++|+|+|+.++.. +. ...+.+..+.. .++| +++|+||+|+
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT---CQ---NLARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 12 679999999999998777778889999999999998643 11 12222233332 3577 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.... +........+.... .++++++||++|.|+.++.+
T Consensus 130 ~~~~------~~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 130 KNRQ------KISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp C----------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred cccc------ccCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 4220 01112233333333 45899999999999998644
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=2.7e-16 Score=161.68 Aligned_cols=158 Identities=22% Similarity=0.270 Sum_probs=104.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.....+ .....|+|.+.....+.+++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~------------------------------v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL------------------------------VSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECCCC------CCEEEEETT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc------------------------------cCCCCCCcCCceEEEEEECC
Confidence 346899999999999999999995321100 11135677777777788889
Q ss_pred eEEEEEeCCCCcChHH------------HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011836 123 TRFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~------------~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 190 (476)
..+.++||||..++.. ....++..+|++++|+|+..+.. .+..+.+..+...+.| +++++
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 9999999999754432 22456788999999999998753 2444555666677888 89999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
||+|+... .....++..+.+...+...+ ..+++++||++|.|+.++.+
T Consensus 300 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 300 NKWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ECGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred ECccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 99998432 11123344444444444333 35899999999999998654
No 135
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.66 E-value=3.8e-16 Score=139.57 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=93.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|.+|+|||||+++|........ ....+.|.+.....+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV------------------------------TDIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccee------------------------------eCCCCceeceeeEEEEECCe
Confidence 347899999999999999999953211000 01234454444455667778
Q ss_pred EEEEEeCCCCcChH--------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEee
Q 011836 124 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~~~~--------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK 192 (476)
.+.++||||+.++. ..+...++.+|++++|+|+..... ....+.+..+... ++| +++|+||
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s-------~~~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHhcccCCC-EEEEEEC
Confidence 89999999987541 123345789999999999987642 1223333333332 577 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+|+...... +.. ....+++++||++|.|+.++
T Consensus 125 ~Dl~~~~~~-------------~~~------~~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 125 ADITGETLG-------------MSE------VNGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp HHHHCCCCE-------------EEE------ETTEEEEECCTTTCTTHHHH
T ss_pred ccCCcchhh-------------hhh------ccCCceEEEeCCCCCCHHHH
Confidence 998321100 000 11468999999999999985
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=145.28 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=84.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+..+|+++|.+|+|||||+++|+.. .... +. ...+.......+...
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~--~~~~-----------------------------~~-~~t~~~~~~~~~~~~ 78 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADG--AFPE-----------------------------SY-TPTVFERYMVNLQVK 78 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEET
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcC--CCCC-----------------------------CC-CCccceeEEEEEEEC
Confidence 345789999999999999999999521 1100 00 000001111122333
Q ss_pred --CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEeeccCC
Q 011836 122 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 --~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~ 196 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... |+ ... ..+..+.. .++| +++|+||+|+.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhh
Confidence 3578999999999998888888899999999999987531 11 111 22333333 2677 89999999994
Q ss_pred CCCchHHHHH------HHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 197 TVNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~------~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
......+.++ -..++...+.+.+++ .+++++||++|.|+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVF 200 (214)
T ss_dssp SCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHH
T ss_pred ccchhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHH
Confidence 3210000000 001233445555543 389999999999999863
No 137
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.66 E-value=7.7e-16 Score=144.05 Aligned_cols=160 Identities=15% Similarity=0.208 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+++|+.. .+. .....+.|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~--~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA--NVD-----------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT--CEE-----------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CCc-----------------------------cCCCCCcceeeeeeeeecCC
Confidence 34589999999999999999999521 110 00112344444445566677
Q ss_pred eEEEEEeCCCC------cCh---HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEe
Q 011836 123 TRFTILDAPGH------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh------~~~---~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviN 191 (476)
..+.|+||||+ ... ...+......+|++|+|+|+.+... |.. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 89999999998 331 1222233567899999999987632 110 1123344444444 677 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+..... ...+....+..+....+ ..++++++||++|.|+.++.+
T Consensus 151 K~Dl~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMDS---LSIDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC--C---CCHHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCchh---hHHHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHHH
Confidence 999953211 01112223344444432 126899999999999998643
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=1.8e-16 Score=163.63 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=87.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+.....+ .....|+|.+.....+..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g 280 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDK 280 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECC
Confidence 445789999999999999999995321100 11235678887777788899
Q ss_pred eEEEEEeCCCCcChHHH--------HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeec
Q 011836 123 TRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~--------~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~ 193 (476)
..++|+||||+.++... +...+..+|++|+|+|+.++... .+..+...++..+ ++| +|+|+||+
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~ 353 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKL 353 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECT
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECc
Confidence 99999999998776432 23356789999999999987531 1222333444443 455 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+.... .... +. +...++ .+++++||++|.|+.++.+
T Consensus 354 Dl~~~~--~~~~----~~----l~~~~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 354 DRAANA--DALI----RA----IADGTG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp TSCTTT--HHHH----HH----HHHHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred CCCCcc--chhH----HH----HHhcCC-----CceEEEEECCCCCHHHHHH
Confidence 995432 1111 11 222222 3799999999999998643
No 139
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.66 E-value=8.1e-17 Score=147.71 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
+...+|+++|++|+|||||+++|+.....+... ....+..+.....+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD-----------------------------YAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC-----------------------------CCCccceEEEEEEEEECC
Confidence 457899999999999999999996321011100 00111112233334444
Q ss_pred ---CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEee
Q 011836 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 192 (476)
Q Consensus 122 ---~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK 192 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... | ......+..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999999888888899999999999987632 1 123334444443 3666 8999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc-Ccccccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 245 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~-g~~i~~~~~ 245 (476)
+|+.... .+ ...+++..+++.++ ++++++||++ |.|+.++.+
T Consensus 142 ~Dl~~~~-~~----v~~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQR-HQ----VRLDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C--------C----CCHHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cccchhh-cc----CCHHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 9984300 00 01133344555554 4899999999 999998643
No 140
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=4e-16 Score=144.79 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=97.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe-
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
+.+..+|+++|..++|||||+.+++. +.+.... ...+..+.....+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~--~~f~~~~-----------------------------~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY--DSFDNTY-----------------------------QATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh--CCCCCCc-----------------------------CCccceEEEEEEEEec
Confidence 44568999999999999999999853 3322110 111112222222233
Q ss_pred -CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH---HcCCceEEEEEeeccCC
Q 011836 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 -~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~---~~~ip~~ivviNK~D~~ 196 (476)
....+.|+||+|+++|.......++.+|++++|.|...... |+ .....+..+. .-++| +|+|.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchH
Confidence 34678899999999999988888999999999999987542 32 2333333333 23566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. .+- ..++...+.+.++ ++++.+||++|.|+.++
T Consensus 132 ~~--r~V----~~~e~~~~a~~~~------~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 132 DK--RQV----SIEEGERKAKELN------VMFIETSAKAGYNVKQL 166 (216)
T ss_dssp GG--CCS----CHHHHHHHHHHHT------CEEEEEBTTTTBSHHHH
T ss_pred hc--Ccc----cHHHHhhHHHHhC------CeeEEEeCCCCcCHHHH
Confidence 21 110 1123334555554 47999999999999986
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.65 E-value=1.5e-16 Score=142.63 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=92.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|+. +....... . ..+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~--~~~~~~~~-----------------~----------t~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYV-----------------P----------TVFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH--SCCC-------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCC-----------------C----------eeeeeEE-EEEEECCEE
Confidence 4568999999999999999999963 22211100 0 0000000 001122234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...++.+|++++|+|+.+... +. ... ..+..+... ++| +++|+||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD- 127 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhhcC-
Confidence 567899999999998888888899999999999987532 11 111 233333332 677 8999999998322
Q ss_pred chHHHHH-------HHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 200 WSKERYD-------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~-------~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
... .. ...++...+.+.+++ .+++++||++|.|+.++
T Consensus 128 -~~~-~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 171 (182)
T 3bwd_D 128 -KQF-FIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGV 171 (182)
T ss_dssp -HHH-HHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHH
T ss_pred -ccc-ccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHH
Confidence 110 00 012333444555543 37999999999999985
No 142
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.65 E-value=9.3e-17 Score=154.32 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|....- ......|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-------------------------------~v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-------------------------------RVGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-------------------------------CCCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCCcEEEEEEEEec-CCe
Confidence 47899999999999999999952110 0011246666655555555 778
Q ss_pred EEEEeCCCCcChHH------HHHHhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 125 FTILDAPGHKSYVP------NMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~~~~------~~~~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
+.++||||+..|.. .....+. .+|++++|+|+.... ........+...++| +++++||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---------RNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---------hHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999988742 2222333 599999999998631 234444556667998 89999999983
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... .. ......+.+.+| ++++++||++|.|+.+++
T Consensus 121 ~~~----~~---~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 121 DGQ----GK---KINVDKLSYHLG------VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHT----TC---CCCHHHHHHHHT------SCEEECBTTTTBSHHHHH
T ss_pred CcC----Cc---HHHHHHHHHHcC------CCEEEEEccCCCCHHHHH
Confidence 110 00 011222333333 479999999999999853
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=1.1e-16 Score=165.57 Aligned_cols=150 Identities=21% Similarity=0.258 Sum_probs=100.5
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...+..++|+++|.+|+|||||+++|+...-. ......|+|.+......+
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~------------------------------~v~~~~g~t~~~~~~~~~ 67 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERIS------------------------------IVEDTPGVTRDRIYSSAE 67 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECT
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCc------------------------------ccCCCCCcceeEEEEEEE
Confidence 34455689999999999999999999431110 011235788888777888
Q ss_pred eCCeEEEEEeCCC--------CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe
Q 011836 120 TETTRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 120 ~~~~~~~liDtPG--------h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 191 (476)
+.+..+.++|||| +..|...+..++..+|++|+|+|+..+.. ....+.+..+...+.| +++|+|
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~N 139 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVN 139 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEE
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEE
Confidence 8899999999999 66777778888899999999999988753 4566677777777888 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+|+... . ..... +..+|+. ..+++||++|.|+.++
T Consensus 140 K~D~~~~--~--------~~~~e-~~~lg~~-----~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 140 KLDNTEM--R--------ANIYD-FYSLGFG-----EPYPISGTHGLGLGDL 175 (456)
T ss_dssp CC-------------------CC-SGGGSSS-----SEEECCTTTCTTHHHH
T ss_pred Cccchhh--h--------hhHHH-HHHcCCC-----ceEEeecccccchHHH
Confidence 9998321 0 11111 2234443 4679999999999885
No 144
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.65 E-value=5.1e-16 Score=147.30 Aligned_cols=157 Identities=12% Similarity=0.107 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+........ ....|.|.......+.+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~ 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSR-----------------------------LGATSVTRACTTGSRRWDK 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCccccEEEEEEEECC
Confidence 45799999999999999999999643322111 0123455555556677889
Q ss_pred eEEEEEeCCCC--------cChHHHHHHhh----hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc------CCc
Q 011836 123 TRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVT 184 (476)
Q Consensus 123 ~~~~liDtPGh--------~~~~~~~~~~~----~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~------~ip 184 (476)
..++|+||||. .++...+.+++ ..+|++|+|+|+.. .. ......+..+... +.|
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~~~l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FT-------AQDQQAVRQVRDMFGEDVLKWM 141 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CC-------HHHHHHHHHHHHHHCGGGGGGE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CC-------HHHHHHHHHHHHHhChhhhccE
Confidence 99999999997 66766676665 89999999999974 21 3444555555543 566
Q ss_pred eEEEEEeeccCCCCCchHHHHHHH-HHHHHHHHHhcCCCccCCeeEEEeeccc-----Cccccccc
Q 011836 185 KLLLVVNKMDDHTVNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTRV 244 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~~~~~~~~-~~~l~~~l~~~g~~~~~~~~iipiSa~~-----g~~i~~~~ 244 (476)
+|++.||+|+.+.+.. +.+.+. ...+..+++.+|. +++++++.. +.|+.+++
T Consensus 142 -iilv~nK~Dl~~~~~~-~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~~Ll 199 (247)
T 3lxw_A 142 -VIVFTRKEDLAGGSLH-DYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVEQLL 199 (247)
T ss_dssp -EEEEECGGGGTTCCHH-HHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHHHHH
T ss_pred -EEEEEchHhcCCCCHH-HHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHHHHH
Confidence 8999999999543211 111110 1346667777664 355555433 56777643
No 145
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.65 E-value=3.3e-16 Score=144.56 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+. +.+... .. ...+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~--~~~~~~------------------------~~---~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS--NKFPTD------------------------YI---PTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH--SCCCSS------------------------CC---CSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc--CCCCcc------------------------CC---CccceeEE-EEEEECCEE
Confidence 4568999999999999999999953 221110 00 00111111 011122233
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~ 199 (476)
..+.|+||||+.+|...+...++.+|++|+|+|+.+... |. ... ..+..+... ++| +++|+||+|+...
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 128 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---YE---NVLKKWMPELRRFAPNVP-IVLVGTKLDLRDD- 128 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhC-
Confidence 689999999999998888788899999999999987532 11 111 233344433 677 8999999998432
Q ss_pred chHHHHHH-----HHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 200 WSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~-----~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.. .... ...+...+...+++ .+++++||++|.|+.+++
T Consensus 129 -~~-~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 129 -KG-YLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp -HH-HHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred -cc-ccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHH
Confidence 11 0000 12333445555543 379999999999999863
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=5.8e-16 Score=143.52 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=98.7
Q ss_pred hccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeee
Q 011836 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
...........+|+++|.+|+|||||+++|+. +.+... . ....+.+.. ..
T Consensus 18 ~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~--~~~~~~------------------------~---~~t~~~~~~-~~ 67 (214)
T 3q3j_B 18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAK--DCYPET------------------------Y---VPTVFENYT-AC 67 (214)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHH--SCCCSS------------------------C---CCCSEEEEE-EE
T ss_pred ccCCCCccceEEEEEECcCCCCHHHHHHHHhc--CCCCCC------------------------c---CCeeeeeEE-EE
Confidence 33444556679999999999999999999953 211100 0 001111111 11
Q ss_pred EEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEeec
Q 011836 116 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKM 193 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~ 193 (476)
..+......+.|+||||+.+|...+...++.+|++|+|+|+.+... |. ......+..+... ++| +++|+||+
T Consensus 68 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~ 141 (214)
T 3q3j_B 68 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTR-VLLIGCKT 141 (214)
T ss_dssp EEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSE-EEEEEECG
T ss_pred EEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECh
Confidence 2233345789999999999998887788899999999999987632 11 0012233344433 666 89999999
Q ss_pred cCCCCCchHHH------HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcc-ccccc
Q 011836 194 DDHTVNWSKER------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 244 (476)
Q Consensus 194 D~~~~~~~~~~------~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~-i~~~~ 244 (476)
|+......... .....++...+.+.+++. +++++||++|.| +.+++
T Consensus 142 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf 194 (214)
T 3q3j_B 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIF 194 (214)
T ss_dssp GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHH
T ss_pred hhccchhhhhhhcccccCccCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHH
Confidence 98431000000 001123334455555432 799999999998 99863
No 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=141.44 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=95.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+..+|+++|++|+|||||+++|+... +.... ....+... ...+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~---------------------------~~t~~~~~---~~~~~~ 63 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEY---------------------------IPTAFDNF---SAVVSV 63 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-------------------------------------CCSSEEE---EEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCCCC---------------------------CCccccee---EEEEEE
Confidence 44567899999999999999999995321 11000 00011111 122334
Q ss_pred CC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccC
Q 011836 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~ 195 (476)
++ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... |. ... ..+..+... ++| +++|+||+|+
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---FQ---NVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 44 467899999999998777777889999999999987532 11 111 222333332 677 8999999998
Q ss_pred CCCCchHHHHH------HHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~------~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.........+. ...++...+...+++ .+++++||++|.|+.++++
T Consensus 137 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp GGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hhchhhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 43210000000 011233344444442 3799999999999998643
No 148
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=1.2e-17 Score=152.92 Aligned_cols=152 Identities=21% Similarity=0.215 Sum_probs=92.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+. +... .+....++.+.....+..+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 78 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFAD--DTYT-----------------------------ESYISTIGVDFKIRTIELD 78 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBC--CCCC-----------------------------CHHHHHHCCSEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCcCCcccceEEEEEEEEC
Confidence 35579999999999999999999842 1111 1111223333333344444
Q ss_pred C--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEeeccCC
Q 011836 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 196 (476)
+ ..+.|+||||+.+|...+...+..+|++|+|+|+.+... | ......+..+... ++| +++|+||+|+.
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 4 679999999999998877778899999999999998632 1 1223333334333 566 89999999984
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
..... .. .+...+...++ ++++++||++|.|+.++
T Consensus 152 ~~~~v--~~----~~~~~~~~~~~------~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 152 TKKVV--DY----TTAKEFADSLG------IPFLETSAKNATNVEQS 186 (199)
T ss_dssp --CCC--CS----CC-CHHHHTTT------CCBCCCCC---HHHHHH
T ss_pred ccccC--CH----HHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 32100 00 11222333333 47999999999999885
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=137.91 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|.+|+|||||+++|+...+.... ..+++.+.....+..
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 67 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-------------------------------EPENPEDTYERRIMV 67 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-------------------------------TTTSCTTEEEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-------------------------------CCCcccceEEEEEEE
Confidence 3445689999999999999999998422111100 011111111122233
Q ss_pred C--CeEEEEEeCCCCcChHH-HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 011836 121 E--TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~--~~~~~liDtPGh~~~~~-~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~ 193 (476)
+ ...+.++||||+.+|.. .....++.+|++|+|+|+.+... |. ...+.+..+.. .++| +++|.||+
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 140 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKS 140 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeech
Confidence 3 35678999999988765 34445778999999999987531 11 22333333333 3677 89999999
Q ss_pred cCCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 194 DDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 D~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
|+.... .+. ++...+.+..+ ++++++||++|.|+.+++
T Consensus 141 Dl~~~~~v~~-------~~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 141 DLARSREVSL-------EEGRHLAGTLS------CKHIETSAALHHNTRELF 179 (195)
T ss_dssp TCTTTCCSCH-------HHHHHHHHHTT------CEEEEEBTTTTBSHHHHH
T ss_pred hccccCCcCH-------HHHHHHHHHhC------CEEEEEcCCCCCCHHHHH
Confidence 995321 111 12223344433 479999999999999863
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1e-15 Score=139.44 Aligned_cols=152 Identities=20% Similarity=0.147 Sum_probs=94.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+.. ..... . ....+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~--~~~~~------------------------~---~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK--RFIWE------------------------Y---DPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS--CCCSC------------------------C---CTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC--CCCcc------------------------c---CCCCCceE-EEEEEECCEE
Confidence 45689999999999999999999642 11100 0 00111111 1112222234
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 198 (476)
..+.|+||||+.+ ...+...+..+|++++|+|+.+... ++ ...+.+..+.. .++| +++|+||+|+...
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~ 147 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---FE---EVLPLKNILDEIKKPKNVT-LILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhhCCCCCc-EEEEEECcccccc
Confidence 6799999999988 5566677889999999999987431 11 22333333322 4677 8999999998432
Q ss_pred C-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCc-ccccccc
Q 011836 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 245 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~~~ 245 (476)
. ... ++...+....+ ++++++||++|. |+.++++
T Consensus 148 ~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 148 RQVST-------EEGEKLATELA------CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp CCSCH-------HHHHHHHHHHT------SEEEECCTTTCTTCHHHHHH
T ss_pred cccCH-------HHHHHHHHHhC------CeEEEECCCcCCcCHHHHHH
Confidence 1 111 12223333433 479999999999 9998643
No 151
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=5.6e-16 Score=160.13 Aligned_cols=147 Identities=24% Similarity=0.308 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|.+|+|||||+++|+...-.+ + ....|+|.+.....+..++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------------------v------s~~~gTT~d~~~~~i~~~g~ 291 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------------------V------TDIPGTTRDVISEEIVIRGI 291 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------------------C------CCSSCCSSCSCCEEEEETTE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------------------c------CCCCCeeeeeEEEEEecCCe
Confidence 44799999999999999999997532111 0 11346677777777788899
Q ss_pred EEEEEeCCCCc-ChH--------HHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 124 RFTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~-~~~--------~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.+.|+||||+. ++. ..+...+..+|++|+|+|+.++.. .+..+.+..+ .+.| +++|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 99999999988 652 455677899999999999987642 1233333333 3666 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+... .+. + ++..++ ++ .++++++||++|.|++++.+
T Consensus 362 L~~~-~~~---~----~~~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 362 VVEK-INE---E----EIKNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp SCCC-CCH---H----HHHHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred cccc-cCH---H----HHHHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 9532 111 1 222222 11 24799999999999998644
No 152
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=1.6e-15 Score=158.59 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|.+|+|||||+++|+... +. ....|+......++.
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~--------------------------------~~~~T~~~~~~~~~~ 363 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQ--SV--------------------------------TTIPTVGFNVETVTY 363 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSS--CC--------------------------------CCCCCSSEEEEEEES
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------CcCCccceeEEEEEe
Confidence 33557899999999999999999995321 10 011234444455777
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 196 (476)
.+..+.|+||||+.+|...+...+..+|++|+|+|+.+... |. ...+.+..+.. .++| +|+|+||+|+.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 436 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI-ILIFANKQDLP 436 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCC
Confidence 88999999999999998888888999999999999987631 11 12222222222 3677 89999999995
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... .. +++ ...+..... ....++++++||++|.|+.+++
T Consensus 437 ~~~-~~---~~~----~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 437 DAM-KP---HEI----QEKLGLTRI-RDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp SCC-CH---HHH----HHHTTCTTC-CSSCEEEEECBTTTTBTHHHHH
T ss_pred cCC-CH---HHH----HHHhchhhh-hcCCeEEEEEECCCCCCHHHHH
Confidence 432 11 122 222211111 1235689999999999999853
No 153
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=2.5e-15 Score=135.76 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=95.4
Q ss_pred cCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
....+..+|+++|.+|+|||||+++|+. +.+... . ...+... ...+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~--~~~~~~------------------------~----~~t~~~~---~~~~~ 61 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLT--GTYVQE------------------------E----SPEGGRF---KKEIV 61 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHH--SSCCCC------------------------C----CTTCEEE---EEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------c----CCCcceE---EEEEE
Confidence 4556679999999999999999999953 211100 0 0011111 12333
Q ss_pred eCC--eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeec
Q 011836 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~ 193 (476)
.++ ..+.|+||||+.+|. .++.+|++++|+|+.+... |+ .....+..+.. .++| ++++.||+
T Consensus 62 ~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 62 VDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---FQ---TVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp ETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred ECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 444 567889999999987 5678999999999997532 11 22333333433 3567 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+...+.... ..++...+...++ .++++++||++|.|+.++++
T Consensus 130 Dl~~~~~~~v----~~~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 130 AISAANPRVI----DDSRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp TCBTTBCCCS----CHHHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred cccccccccc----CHHHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 9842111110 1123333444443 25899999999999998643
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=136.64 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=92.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|.+|+|||||+++|+... +... . ....+.+.. ....+..
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~ 66 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKR--FISE------------------------Y---DPNLEDTYS-SEETVDH 66 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSS--CCSC------------------------C---CTTCCEEEE-EEEEETT
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------c---CCCccceee-EEEEECC
Confidence 34557899999999999999999996321 1100 0 001121111 1112222
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D 194 (476)
....+.|+||||+.+|.. +...++.+|++++|+|+.+... |+ .....+..+.. .++| +++|+||+|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 138 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNKLD 138 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECGG
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEECcc
Confidence 346789999999988865 3567789999999999987531 11 22233333332 3677 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeec-ccCccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRV 244 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa-~~g~~i~~~~ 244 (476)
+.... +. ..++...+.+.++ ++++++|| ++|.|+.+++
T Consensus 139 l~~~~--~v----~~~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 139 MAQYR--QV----TKAEGVALAGRFG------CLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp GGGGC--SS----CHHHHHHHHHHHT------CEEEECCSSSCSHHHHHHH
T ss_pred hhhcC--cc----CHHHHHHHHHHcC------CcEEEEeecCccccHHHHH
Confidence 84211 10 1122333444444 47999999 8999999853
No 155
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.61 E-value=1.8e-15 Score=136.44 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=96.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.....+|+++|++|+|||||+++|+.. ..... . ....+.... ....+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~--~~~~~------------------------~---~~t~~~~~~-~~~~~~~~ 53 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD--CFPEN------------------------Y---VPTVFENYT-ASFEIDTQ 53 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS--CCCSS------------------------C---CCCSEEEEE-EEEECSSC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------C---CCccceeEE-EEEEECCE
Confidence 345689999999999999999999632 11100 0 000111111 11122233
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++|+|+|+.+... |. .. ...+..+.. .++| +++|+||+|+...
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 126 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc
Confidence 4678999999999998777777889999999999987531 11 11 122233333 2566 8999999999431
Q ss_pred CchHHHHHH---------HHHHHHHHHHhcCCCccCCeeEEEeecc-cCccccccc
Q 011836 199 NWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~---------~~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~~i~~~~ 244 (476)
.....+ ..++...+.+.++ .++++++||+ +|.|+.+++
T Consensus 127 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 127 ---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 174 (184)
T ss_dssp ---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHH
T ss_pred ---hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHH
Confidence 111111 1123344555544 2489999999 689998853
No 156
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=5.9e-15 Score=142.13 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=86.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
...+|+++|++|+|||||+|+|+...- ..... + ........+++++.....+..++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~-~~~~~-----------~-----------~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDL-YSPEY-----------P-----------GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCc-cccCC-----------C-----------CcccccCCceEEEEEEEEEecCCe
Confidence 358999999999999999999852211 10000 0 00000122333333334444444
Q ss_pred -eEEEEEeCCCCcCh-------HHHH-------HHhhhh-------------cCEEEEEEECCC-CccccccCCCCchHH
Q 011836 123 -TRFTILDAPGHKSY-------VPNM-------ISGASQ-------------ADIGVLVISARK-GEFETGFEKGGQTRE 173 (476)
Q Consensus 123 -~~~~liDtPGh~~~-------~~~~-------~~~~~~-------------~D~~ilVvda~~-g~~e~~~~~~~qt~e 173 (476)
..++|+||||+.++ .... ...+.. +|+++++|++.. +.. ....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-------~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-------PLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-------HHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-------HHHHH
Confidence 48999999998433 1111 222222 789999997665 432 34555
Q ss_pred HHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 174 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.+..+.. ++| +|+|+||+|+. .....+..++.+...+...+ ++++++|+++++|+.++
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~----~~~e~~~~~~~i~~~l~~~~------i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 194 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCC-----------
T ss_pred HHHHHhc-cCC-EEEEEeccCCC----CHHHHHHHHHHHHHHHHHcC------CeEEcCCCCCChhHHHH
Confidence 5555555 777 89999999983 24455566667777776654 46899999999999885
No 157
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.60 E-value=5.2e-15 Score=132.29 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=90.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+..+|+++|.+|+|||||+++|+. +.+.. . ....+... ...+..+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~--~~~~~-------------------------~---~~t~~~~~---~~~~~~~ 50 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLT--GSYQV-------------------------L---EKTESEQY---KKEMLVD 50 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHH--SCCCC-------------------------C---SSCSSSEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh--CCCCC-------------------------c---CCCcceeE---EEEEEEC
Confidence 34678999999999999999999953 21110 0 00111111 1122233
Q ss_pred --CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeec
Q 011836 122 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKM 193 (476)
Q Consensus 122 --~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~ 193 (476)
...+.|+||||+.++ ..++.+|++|+|+|+.+... |. .....+..+.. .++| +++|.||+
T Consensus 51 ~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 118 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---FQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQD 118 (178)
T ss_dssp TEEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECT
T ss_pred CEEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 356899999999873 35678999999999987532 11 11222112222 2566 89999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 194 D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+...+...... +++..+.+..+ .++++++||++|.|+.++++
T Consensus 119 Dl~~~~~~~v~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 119 RISASSPRVVGD----ARARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp TCBTTBCCCSCH----HHHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred cccccccCcCCH----HHHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 983211000011 22223333332 35899999999999998643
No 158
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.38 E-value=7.9e-17 Score=147.88 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=98.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|.+|+|||||+++|+.. .+..... . ..+... .....+...
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~~~-----------------~----------t~~~~~-~~~~~~~~~ 76 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN--AFPGEYI-----------------P----------TVFDNY-SANVMVDGK 76 (204)
Confidence 356789999999999999999998531 1111000 0 000000 001112233
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~ 198 (476)
...+.|+||||+.+|...+...+..+|++++|+|+.+... +. ... ..+..+... ++| +++|+||+|+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~ 149 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 149 (204)
Confidence 4567799999999998888888899999999999987642 11 121 223333333 677 8999999999432
Q ss_pred CchHHHH------HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 199 NWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~------~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
....+.+ ....++...+.+..++ .+++++||++|.|+.++.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 1111100 0111222233333322 2789999999999998644
No 159
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=2.2e-15 Score=138.69 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=96.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+...+|+++|.+|+|||||+++|+.. ..... . ....+.... ....+..
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~------------------------~---~~t~~~~~~-~~~~~~~ 73 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKD--CFPEN------------------------Y---VPTVFENYT-ASFEIDT 73 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS--CCCSS------------------------C---CCCSEEEEE-EEEESSS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------c---CCccceeEE-EEEEECC
Confidence 3456789999999999999999999532 11100 0 000111110 1111223
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEeeccCCC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~ 197 (476)
....+.|+||||+.+|.......+..+|++|+|+|+.+... |. .. ...+..+.. .++| +++|+||+|+..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 146 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhcc
Confidence 34689999999999998777777889999999999987531 11 11 122233333 2566 899999999842
Q ss_pred CCchHHHHHH---------HHHHHHHHHHhcCCCccCCeeEEEeecc-cCccccccc
Q 011836 198 VNWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~---------~~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~~i~~~~ 244 (476)
. .....+ ..++...+.+.++ .++++++||+ +|.|+.+++
T Consensus 147 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 147 D---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp C---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHH
T ss_pred c---hhhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHH
Confidence 1 111111 1123344555544 2479999999 689998853
No 160
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=7.6e-15 Score=138.34 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=88.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|++|+|||||+++|+..... . ......++|.+.....+.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~-~----------------------------~~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVF-H----------------------------SGTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCS-C----------------------------C-------CCSCEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcC-c----------------------------cCCCCCceeeeEEEEEEEe
Confidence 3455799999999999999999999632110 0 0011224566555666778
Q ss_pred CCeEEEEEeCCCCcC-----------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-----HcCCc
Q 011836 121 ETTRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVT 184 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-----~~~ip 184 (476)
.+..+.|+||||..+ +...+......+|++|+|+|+.... ....+.+..+. ....|
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~ 147 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSF 147 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccce
Confidence 889999999999543 3444444456789999999987432 23333333332 22346
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeeccc
Q 011836 185 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 185 ~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~ 236 (476)
+++|+||+|+.....-++.++...+.+..+++.++. .++++++..
T Consensus 148 -~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~ 192 (239)
T 3lxx_A 148 -MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKA 192 (239)
T ss_dssp -EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTC
T ss_pred -EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCC
Confidence 899999999843321111122222356667777653 466666553
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.7e-15 Score=139.01 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=86.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+...- .. .......++... ..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~--~~----------------------------~~~~~~~~~~~~-----~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP----------------------------TVVSQEPLSAAD-----YD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSC--CC----------------------------BCCCSSCEEETT-----GG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC--CC----------------------------eeeecCceEEEE-----ee
Confidence 34568999999999999999999963211 00 000011122111 14
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhh----cCEEEEEEECC-CCccccccCCCCchHHHHHHHHH-------cCCceEEEE
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~----~D~~ilVvda~-~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivv 189 (476)
...+.|+||||+.+|...+...+.. +|++|+|+|+. ... .| ....+.+..+.. .++| +++|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KL---TTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CC---HHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HH---HHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 5789999999999998877777776 99999999998 321 11 122233322221 3677 9999
Q ss_pred EeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccc
Q 011836 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 240 (476)
Q Consensus 190 iNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i 240 (476)
+||+|+..........+.+.+++..+....+ .+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERRK------KSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH------HHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHHh------cccccccccccccc
Confidence 9999996543222223333444444444332 46899999998764
No 162
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.58 E-value=3.4e-15 Score=134.73 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=90.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|++|+|||||+++|+.. ... .....|+|..... +... .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~t~~~~~--~~~~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK--KVR-----------------------------RGKRPGVTRKIIE--IEWK--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC--CCS-----------------------------SSSSTTCTTSCEE--EEET--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CCc-----------------------------cCCCCCccceeEE--EecC--CE
Confidence 58999999999999999999532 111 0111233332222 2222 78
Q ss_pred EEEeCCC-----------CcChHHHHHHh----hhhcCEEEEEEECCCCccc-ccc---CCCCchHHHHHHHHHcCCceE
Q 011836 126 TILDAPG-----------HKSYVPNMISG----ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 186 (476)
Q Consensus 126 ~liDtPG-----------h~~~~~~~~~~----~~~~D~~ilVvda~~g~~e-~~~---~~~~qt~e~l~~~~~~~ip~~ 186 (476)
.++|||| +..|...+... +..+++++.|+|+.....- ..+ ....+..+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 9999999 44454444333 4456788888887642100 000 0002233444555667888 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCcc-CCeeEEEeecccCcccccccc
Q 011836 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~iipiSa~~g~~i~~~~~ 245 (476)
++|+||+|+... .. +.+..+.+.+++... -..+++++||++|.|+.++.+
T Consensus 126 ilv~nK~Dl~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQ-------EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp EEEEECGGGCSC--HH-------HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred EEEeehHhccCc--HH-------HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 999999999432 11 223333444443200 013689999999999998643
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.57 E-value=1.6e-15 Score=156.11 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=90.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|++|+|||||+++|+.....+.. ...|+|.+.....+..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~------------------------------~~~gtT~d~~~~~i~~~g 271 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVT------------------------------DLPGTTRDVVESQLVVGG 271 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCS------------------------------CCTTCCHHHHHHEEEETT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCccccc------------------------------CCCCeeEEEEEEEEEECC
Confidence 34578999999999999999999754321110 123455555555666788
Q ss_pred eEEEEEeCCCCcChHHH--------HHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 123 TRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~--------~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
..+.|+||||+.++... +...+..+|++|+|+|+..+.. .+..+.+..+. ..| +++|+||+|
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l~--~~p-iivV~NK~D 341 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQVK--HRP-LILVMNKID 341 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHHT--TSC-EEEEEECTT
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhcc--CCc-EEEEEECCC
Confidence 99999999998765322 2335678999999999998642 23333333332 355 899999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... . .. .++.+. ...+++++||++|.|++++.+
T Consensus 342 l~~~~--~--~~--------~~~~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 342 LVEKQ--L--IT--------SLEYPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp SSCGG--G--ST--------TCCCCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred CCcch--h--hH--------HHHHhc----cCCcEEEEECCCCCCHHHHHH
Confidence 95332 1 00 111111 245899999999999998643
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=1.1e-14 Score=145.42 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=95.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeE
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
...|+++|++|+|||||+++|+.... ..+...+.|.+.....+..++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEEECCEE
Confidence 44599999999999999999952110 00112345666656667777889
Q ss_pred EEEEeCCCCcC-----h---HHHHHHhhhhcCEEEEEEECCCCc--cccccCCCCchHHHHHHHHH---cCCceEEEEEe
Q 011836 125 FTILDAPGHKS-----Y---VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKT---LGVTKLLLVVN 191 (476)
Q Consensus 125 ~~liDtPGh~~-----~---~~~~~~~~~~~D~~ilVvda~~g~--~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviN 191 (476)
+.++||||+.. + ...+...+..+|++++|+|+.+.. .+ .+.......+.. .+.| +|+|.|
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~N 300 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTLN 300 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEEE
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEEE
Confidence 99999999722 1 234455678999999999998753 21 122222333444 3566 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+.... .. .....+..+...++. ...+++|+||++|.|+.++.+
T Consensus 301 K~Dl~~~~--~~---~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 301 KIDKINGD--LY---KKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp CGGGCCSC--HH---HHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHHH
T ss_pred CCCCCCch--HH---HHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHHH
Confidence 99994322 11 111222222333311 135789999999999998543
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.56 E-value=1.1e-14 Score=143.76 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=98.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|.+|+|||||+++|+. +.+... ..+.+.+.....+..++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT--NAFPGE------------------------------YIPTVFDNYSANVMVDG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH--SCCCCS------------------------------CCCCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCChHHHHHHHHh--CCCCcc------------------------------cCCcccceeEEEEEECC
Confidence 4568999999999999999999853 211100 01112222222333444
Q ss_pred --eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEeeccCCC
Q 011836 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~ 197 (476)
..+.|+||||+.+|.......+..+|++++|+|+.+... |. ... ..+..+... ++| +++|+||+|+..
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FH---HVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhCCCCc-EEEEEEchhccc
Confidence 456699999999998888888899999999999987532 11 111 222333333 677 899999999843
Q ss_pred CCchHHHHHH------HHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~------~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.....+.+.+ ...+...+.+..++ .+++++||++|.|+.++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 320 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHH
Confidence 2100111100 02233444555443 37999999999999985
No 166
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.54 E-value=2.8e-15 Score=148.35 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=94.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-e
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 123 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 123 (476)
..+|+++|.+|+|||||+++|+.....+ ......|.......+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 4579999999999999999984221100 0012234443444455554 7
Q ss_pred EEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEe
Q 011836 124 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviN 191 (476)
.+.|+||||+.+ +....++.+..+|++|+|+|+........+ ......+..+..+ ++| +++|+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 899999999532 445566667789999999999762100001 1223334444443 566 889999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+... .+ .+..+.+.++. ..+++++||+++.|+.++..
T Consensus 283 K~Dl~~~---~e-------~~~~l~~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMPEA---AE-------NLEAFKEKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTSTTH---HH-------HHHHHHHHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCCCC---HH-------HHHHHHHHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 9999421 11 12222233321 25789999999999998643
No 167
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=3.1e-14 Score=136.13 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=78.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+...... .....+.|.......+..
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~ 81 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------------VSPFQAEGLRPVMVSRTM 81 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------------CCSSCC-CCCCEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcceeeEEEEEEE
Confidence 33467999999999999999999996422110 011244555555566778
Q ss_pred CCeEEEEEeCCCCcChHHH-------HHHhh--hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-C---CceEE
Q 011836 121 ETTRFTILDAPGHKSYVPN-------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~-------~~~~~--~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~---ip~~i 187 (476)
.+..++|+||||+.+|... +.+.+ ..+|++++|+|.+...+. ....+.+..+... + .++++
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~~i 155 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD------ELDKQVVIAITQTFGKEIWCKTL 155 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCC------HHHHHHHHHHHHHHCGGGGGGEE
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhchhhhcCEE
Confidence 8999999999999876322 22222 278999999988764321 2233444444432 3 12389
Q ss_pred EEEeeccCC
Q 011836 188 LVVNKMDDH 196 (476)
Q Consensus 188 vviNK~D~~ 196 (476)
+|+||+|+.
T Consensus 156 vv~nK~Dl~ 164 (262)
T 3def_A 156 LVLTHAQFS 164 (262)
T ss_dssp EEEECTTCC
T ss_pred EEEeCcccC
Confidence 999999984
No 168
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=1.5e-14 Score=130.40 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=90.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE-----
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE----- 119 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~----- 119 (476)
..+|+++|.+|+|||||+++|+........ +....+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~-----------------------------~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG-----------------------------MQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC-----------------------------CcceeccEEeEEeeeccccCC
Confidence 368999999999999999998421100000 0001111222111121
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~ 197 (476)
.....+.++||||+++|.......++.+|++++|+|.+++.. .+. .....+..+.. .+.| +++|.||+|+..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EVD---AMKPWLFNIKARASSSP-VILVGTHLDVSD 126 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HHH---THHHHHHHHHHHCTTCE-EEEEEECGGGCC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HHH---HHHHHHHHHHhhCCCCc-EEEEEECCCccc
Confidence 135689999999998887766667788999999999987520 011 22333333332 2566 888999999832
Q ss_pred CCchHHHHHHH-HHHHHHHHHhcCCCccCCeeEEEeecccCc-ccccc
Q 011836 198 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~-~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-~i~~~ 243 (476)
....... ......+.+..++. ...+++++||++|. |+.++
T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l 168 (184)
T 2zej_A 127 ----EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKL 168 (184)
T ss_dssp ----HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHH
Confidence 1111111 12223333334432 11248999999996 88875
No 169
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=6.5e-14 Score=134.51 Aligned_cols=119 Identities=12% Similarity=0.067 Sum_probs=77.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+...-.. .....+.|.......+...
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~ 85 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVS------------------------------ISPFQSEGPRPVMVSRSRA 85 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCSSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCcceeeEEEEEeeC
Confidence 3457999999999999999999996321100 0011333444444556778
Q ss_pred CeEEEEEeCCCCcChH---HHHHHhh------hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC----CceEE
Q 011836 122 TTRFTILDAPGHKSYV---PNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG----VTKLL 187 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~---~~~~~~~------~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~~----ip~~i 187 (476)
+..++|+||||+.++. ......+ ..+|++|+|+|++...+ . ....+.+..+.. .+ .| ++
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~----~--~~~~~~~~~l~~~~~~~~~~~-ii 158 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV----D--NLDKLVAKAITDSFGKGIWNK-AI 158 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC----C--HHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC----C--HHHHHHHHHHHHHhCcccccC-EE
Confidence 8999999999997663 2222222 36999999998865322 1 233444444443 24 35 99
Q ss_pred EEEeeccCCC
Q 011836 188 LVVNKMDDHT 197 (476)
Q Consensus 188 vviNK~D~~~ 197 (476)
+|+||+|+..
T Consensus 159 vV~nK~Dl~~ 168 (270)
T 1h65_A 159 VALTHAQFSP 168 (270)
T ss_dssp EEEECCSCCC
T ss_pred EEEECcccCC
Confidence 9999999843
No 170
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.4e-14 Score=131.36 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=89.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.....+|+++|.+|+|||||+++|+.....+... ....|.+... ..+..+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~----------------------------~~~~g~d~~~--~~i~~~ 83 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD----------------------------CEVLGEDTYE--RTLMVD 83 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEE--EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc----------------------------CCccceeeEE--EEEEEC
Confidence 3456899999999999999999985322211110 0011221111 122333
Q ss_pred C--eEEEEEeCCCCcChHHHH-HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeecc
Q 011836 122 T--TRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~--~~~~liDtPGh~~~~~~~-~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 194 (476)
+ ..+.++||+|.......+ ....+.+|++|+|+|.++... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~D 156 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSD 156 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTT
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChH
Confidence 3 467899999987732222 223467999999999986421 11 12223333332 2677 899999999
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 195 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 ~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+.... ... + +...+.... +++++++||++|.|+.++++
T Consensus 157 L~~~r~v~~---~----e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 157 LVRCREVSV---S----EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp CGGGCCSCH---H----HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred HhcCceEeH---H----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 84211 111 1 111222333 24799999999999998643
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.51 E-value=1.8e-14 Score=151.80 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=96.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEee------
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------ 114 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~------ 114 (476)
......+|+++|.+|+|||||+++|+... +... .....|.++...
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~ 87 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK---------------------------ESQTHGLNVVTKQAPNIK 87 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSG
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceEEEEecccccc
Confidence 34567999999999999999999995311 1100 000112222110
Q ss_pred eEEE--EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEE
Q 011836 115 RAHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVV 190 (476)
Q Consensus 115 ~~~~--~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivvi 190 (476)
...+ ......+.++||||++.|.......++.+|++|+|+|+... ......+..+..++ .| +|+|+
T Consensus 88 ~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~ 157 (535)
T 3dpu_A 88 GLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVM 157 (535)
T ss_dssp GGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEE
T ss_pred ceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEE
Confidence 0001 12357899999999999988777778899999999999764 24555666666655 77 89999
Q ss_pred eeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
||+|+..... . ..+.+...+...+ .+++++||++|.|+.++.+
T Consensus 158 NK~Dl~~~~~--v----~~~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 158 NKIDENPSYN--I----EQKKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CCTTTCTTCC--C----CHHHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred ECCCcccccc--c----CHHHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 9999853211 0 1133444555544 3699999999999998643
No 172
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.2e-14 Score=130.07 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=71.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+...- .. .. .....+++. ...
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~--~~-~~-------------------------~~~~~~~~~-------~~~ 89 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP-TV-------------------------VSQEPLSAA-------DYD 89 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSC--C---------------------------------------------CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCC--Cc-cc-------------------------ccCCCceee-------eec
Confidence 34568999999999999999999964211 00 00 000111111 114
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhh----cCEEEEEEECC-CCccccccCCCCchHHHHHHHH-H------cCCceEEEE
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAK-T------LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~----~D~~ilVvda~-~g~~e~~~~~~~qt~e~l~~~~-~------~~ip~~ivv 189 (476)
...+.|+||||+.+|...+...+.. +|++|+|+|+. .... + ....+.+..+. . .++| +++|
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv 162 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK---L---TTTAEFLVDILSITESSCENGID-ILIA 162 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHH---H---HHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchh---H---HHHHHHHHHHHhhhhhccccCCC-EEEE
Confidence 5788999999999886665555554 89999999998 3210 1 11222222221 1 2677 8999
Q ss_pred EeeccCCCCC
Q 011836 190 VNKMDDHTVN 199 (476)
Q Consensus 190 iNK~D~~~~~ 199 (476)
+||+|+....
T Consensus 163 ~nK~Dl~~~~ 172 (193)
T 2ged_A 163 CNKSELFTAR 172 (193)
T ss_dssp EECTTSTTCC
T ss_pred EEchHhcCCC
Confidence 9999996543
No 173
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.50 E-value=9e-14 Score=126.41 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=88.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|.+|+|||||+++|+.....+.... ...|.+.. ...+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~--~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTY--ERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEE--EEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEE--EEEEEECC
Confidence 3468999999999999999999964333221100 01122211 11223333
Q ss_pred --eEEEEEeCCCCcC-hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 011836 123 --TRFTILDAPGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 --~~~~liDtPGh~~-~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 195 (476)
..+.++||+|... +........+.+|++++|+|.++... |+ ...+.+..+.. .++| +++|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 4668899999765 22122234568999999999986421 11 12222232332 2677 8999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.... .-.. ++...+.... +++++++||++|.|+.++++
T Consensus 127 ~~~r--~v~~----~~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 127 VRXR--EVSV----SEGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGGC--CSCH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred hccc--cccH----HHHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 4211 0001 1111122222 34799999999999998643
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.49 E-value=1.1e-13 Score=138.40 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=94.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|.+|+|||||+++|+.... . .....+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP--E-----------------------------IASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC--E-----------------------------EECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--c-----------------------------cCCCCCeeeceeEEEEEecC
Confidence 4567999999999999999999942110 0 00012233333334455567
Q ss_pred eEEEEEeCCCCcChH--------HHHHHhh-hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH-c-CCceEEEEEe
Q 011836 123 TRFTILDAPGHKSYV--------PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~~~--------~~~~~~~-~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~-~-~ip~~ivviN 191 (476)
..+.++||||+.++. .....++ ..+|.+++|+|+.... ++.. ....+.+..+.. . +.| +++|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHHHHHhcCCCC-EEEEEE
Confidence 889999999986542 1223333 3699999999987642 0110 111233333332 3 677 899999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
|+|+.. ...++ ++..++... .++++++||++|+|++++.+
T Consensus 289 K~Dl~~----~~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVAD----EENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTCC----HHHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccCC----hHHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 999832 12222 233334333 34799999999999998644
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.48 E-value=1.6e-13 Score=133.57 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=67.6
Q ss_pred CeEEEEEeCCCCc-------------ChHHHHHHhhhhcCEEE-EEEECCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 011836 122 TTRFTILDAPGHK-------------SYVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 186 (476)
Q Consensus 122 ~~~~~liDtPGh~-------------~~~~~~~~~~~~~D~~i-lVvda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~~ 186 (476)
...++|+||||+. .+...+..++..+|.++ +|+|+..+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999964 34455556777888776 6899988642 2332 345555556777 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
++|+||+|+..... . ..+.+...+..+. ....+++++||++|.|+.++.+
T Consensus 196 i~V~NK~Dl~~~~~--~----~~~~~~~~~~~~~---~~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEGT--D----ARDVLENKLLPLR---RGYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTTC--C----CHHHHTTCSSCCT---TCEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCCc--h----HHHHHhCCcCcCC---CCcEEEECCChhhccccccHHH
Confidence 99999999953321 0 1111111111111 0135789999999999998643
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.46 E-value=9.1e-14 Score=136.38 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCCcC-------------hHHHHHHhhhhcCEEEEEEEC-CCCccccccCCCCchHHHHHHHHHcCCceE
Q 011836 121 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQTREHVMLAKTLGVTKL 186 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-------------~~~~~~~~~~~~D~~ilVvda-~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ 186 (476)
...+++|+||||+.+ +...+..++..+|++++|+|+ ..+.. ..+....+..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~------~~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh------hhHHHHHHHHhCCCCCc-E
Confidence 457899999999764 556667778899999999997 44431 02223556666667888 8
Q ss_pred EEEEeeccCCC
Q 011836 187 LLVVNKMDDHT 197 (476)
Q Consensus 187 ivviNK~D~~~ 197 (476)
++|+||+|+..
T Consensus 202 i~v~NK~Dl~~ 212 (315)
T 1jwy_B 202 IGVITKLDLMD 212 (315)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEcCcccCC
Confidence 99999999954
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.46 E-value=6.8e-13 Score=121.88 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=92.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.-.+..+|+++|++|+|||||+++|+.... .. ......|.|..... +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~--~~---------------------------~~~~~~G~~~~~~~--~~~ 70 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS--LA---------------------------RTSKTPGRTQLINL--FEV 70 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEE--EEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCc--cc---------------------------cccCCCccceeeEE--EEe
Confidence 334557899999999999999999842110 00 00012334333222 222
Q ss_pred CCeEEEEEeCCCCcC----------hHHHH---HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011836 121 ETTRFTILDAPGHKS----------YVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~----------~~~~~---~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 187 (476)
.+ .+.++||||+.. |...+ ......+|++++++|+..+.. ....+....+...++| ++
T Consensus 71 ~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~ 141 (210)
T 1pui_A 71 AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VL 141 (210)
T ss_dssp ET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EE
T ss_pred cC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eE
Confidence 23 678999999853 22222 222257899999999987642 1223444556677888 77
Q ss_pred EEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
++.||+|+. + ....+.....+..++...+. .+.++|+||+++.|+.++
T Consensus 142 ~v~nK~D~~--s--~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 142 VLLTKADKL--A--SGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp EEEECGGGS--C--HHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHH
T ss_pred EEEecccCC--C--chhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHH
Confidence 899999983 2 22222223445555554432 367899999999999885
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.44 E-value=3.3e-13 Score=131.43 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=104.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEEE
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+.++.. + .... .....+.|+......+. ...++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~-~~~~---------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--N-MQPL---------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--C-CCSG---------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHc--C-CCCC---------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 488999999999999987631 1 1100 00113344444444332 347899
Q ss_pred EEeCCCCcChHH---HHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEeeccCCCCCch
Q 011836 127 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 127 liDtPGh~~~~~---~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~ 201 (476)
||||||+++|.. .+....+.++++|+|+|+.+. +...+ ....+.+..+.. -++| ++++.||+|+...+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~---~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R 124 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI---TNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFK 124 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH---HHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH---HHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhh
Confidence 999999999963 345678999999999999886 32111 011222222222 3677 8899999999433211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCC-ChhhHHHHHhhC
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW-NGPCLFEALDRI 264 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~-~g~~L~~~l~~l 264 (476)
.+..+++..+..+.+.+.++. .-+++++.+||++ .|+.+.+......+. ..+.|.+.|+.+
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~ 186 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNL 186 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGG
T ss_pred hhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122344444444444443221 1257999999997 588775432222222 234455555554
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.44 E-value=2.8e-13 Score=123.62 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=94.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC--
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|+.|+|||||+++|+...-... .....|.+... ..+..++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~--~~i~~~g~~ 53 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFAT--RSIQVDGKT 53 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEE--EEEEETTEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEE--EEEEECCEE
Confidence 58999999999999999999953211000 00011222222 2333444
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCCCC
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 199 (476)
..+.++||||+..|..........+|++++|+|+..... + ......+..+.. .+.| +++++||+|+...
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~- 125 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL- 125 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG-
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc-
Confidence 467899999999887666666778999999999987532 1 122223333332 2455 8899999998421
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..... .....++... .+.++.+||+++.|+.++.+
T Consensus 126 -~~~~~----~~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 -RAVPT----DEARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp -CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred -cCcCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11011 1223344443 35789999999999998644
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=3.3e-13 Score=136.31 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCcCh-------HHHHHHhhhhcCEEEEEEECCCC
Q 011836 123 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 123 ~~~~liDtPGh~~~-------~~~~~~~~~~~D~~ilVvda~~g 159 (476)
.++.|+||||+.+. ....+..++.+|++++|+|+.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998542 12223456899999999999875
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=134.76 Aligned_cols=159 Identities=13% Similarity=0.180 Sum_probs=73.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
...+|+++|++|+|||||+++|+.. +...... ......+..+.+++......+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 3578999999999999999998421 2111110 0000111122333333222233333
Q ss_pred -eEEEEEeCCCCcChH-------HHHH-------Hhhhh-------------cCEEEEEEECCCCccccccCCCCchHHH
Q 011836 123 -TRFTILDAPGHKSYV-------PNMI-------SGASQ-------------ADIGVLVISARKGEFETGFEKGGQTREH 174 (476)
Q Consensus 123 -~~~~liDtPGh~~~~-------~~~~-------~~~~~-------------~D~~ilVvda~~g~~e~~~~~~~qt~e~ 174 (476)
..++++||||+.++. ..+. ..+.. +|+++++|++....+ . ....+.
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l----~--~~d~~~ 167 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL----K--PLDVAF 167 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSC----C--HHHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCc----c--hhHHHH
Confidence 378999999994332 1111 22222 256888887633321 1 222233
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 175 l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+..+ ..++| +|+|+||+|+.. .......+..+...+...+ ++++++||++|.| .+.
T Consensus 168 ~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 168 MKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHCC------CCEEeCCCcCCCc-chh
Confidence 3332 24677 999999999942 2334444556666666554 4789999999998 543
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.40 E-value=7.8e-13 Score=132.02 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=69.4
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
..++.+.||||||...- ....+..+|++|+|+|+..+... +... ...+..| .++|+||+|+.
T Consensus 169 ~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~-------~~l~----~~~~~~p-~ivVlNK~Dl~--- 230 (355)
T 3p32_A 169 AAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL-------QGIK----KGVLELA-DIVVVNKADGE--- 230 (355)
T ss_dssp HTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT-------TTCC----TTSGGGC-SEEEEECCCGG---
T ss_pred hCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH-------HHHH----HhHhhcC-CEEEEECCCCc---
Confidence 35789999999996442 22335889999999998766321 1111 0113356 78999999983
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcc-CCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~iipiSa~~g~~i~~~~~ 245 (476)
.....+...+++...+...+.... -..+++++||++|.|+.++.+
T Consensus 231 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 -HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp -GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 233445555666666554421100 035899999999999998644
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.39 E-value=1.1e-12 Score=141.87 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCcC---hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHH-HHHHcCCceEEEEEeeccCCCC
Q 011836 123 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~---~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~-~~~~~~ip~~ivviNK~D~~~~ 198 (476)
..++||||||+.+ ....+...+..+|++|+|+|+..+.. ....+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999654 45566677889999999999988642 23333332 33445777 8999999998422
Q ss_pred C---c-hHHHHHHHHHHHH----HHHHhc-C---CCccCCeeEEEeecc--------------cCccccccc
Q 011836 199 N---W-SKERYDEIESKMT----PFLKAS-G---YNVKKDVQFLPISGL--------------MGLNMKTRV 244 (476)
Q Consensus 199 ~---~-~~~~~~~~~~~l~----~~l~~~-g---~~~~~~~~iipiSa~--------------~g~~i~~~~ 244 (476)
. . ..+.+++..+.+. ..+... + +. ....+++++||+ +|.|+.++.
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~ 316 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRLKNPQADLDGTGFPKFM 316 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhccCchhhhhccCHHHHH
Confidence 1 0 0012333333332 223221 1 11 013479999999 888888753
No 184
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.38 E-value=1.3e-12 Score=129.78 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=66.9
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
+.++.++|+||||+.++... ....+|++++|+|+..+.. + +.... ...++| .++|+||+|+.+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 45789999999998876544 3589999999999976531 1 11111 112456 678999999832
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCcc-CCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~iipiSa~~g~~i~~~~~ 245 (476)
...+....+++...+..++.... -..+++|+||++|.|+.++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 22344444555555544321000 024789999999999998644
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.36 E-value=1.8e-12 Score=117.64 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=93.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|+.|+|||||+++|+...-. ......++.+.....+..++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCC-------------------------------CSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 34689999999999999999998532110 00011122222233344454
Q ss_pred e--EEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEeeccCCC
Q 011836 123 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~--~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 197 (476)
. .+.++|+||+.+|...+......+|++++|+|...... + ......+..+.. .+.| +++++||+|+..
T Consensus 76 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4 45679999999887766667788999999999876421 1 112222222322 2455 889999999842
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ..... .....++... .+.++.+||+++.|+.++
T Consensus 149 ~--~~~~~----~~a~~l~~~~------~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 149 L--RAVPT----DEARAFAEKN------GLSFIETSALDSTNVEAA 182 (191)
T ss_dssp G--CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred c--cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 1 11111 1223334433 357899999999999885
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.31 E-value=5.4e-12 Score=132.69 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=58.5
Q ss_pred eEEEEEeCCCCcC-----------hHHHHHHhhhhcCEEEEEEECCCC-ccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011836 123 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~g-~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 190 (476)
..++||||||+.+ |...+...+..+|++|+|+|+... .. .+..+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4689999999876 667777788999999999999873 32 3556666666666777 89999
Q ss_pred eeccCCCCCchHHHHHHHHHHHH
Q 011836 191 NKMDDHTVNWSKERYDEIESKMT 213 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~l~ 213 (476)
||+|+. + .+.+.++...+.
T Consensus 226 NK~Dl~--~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMV--E--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGS--C--HHHHHHHHHHHH
T ss_pred ECCCcc--C--HHHHHHHHHHhh
Confidence 999993 2 344455555443
No 187
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.30 E-value=6.6e-13 Score=126.36 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=49.1
Q ss_pred hcCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 146 QADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 146 ~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
.+|++|+|+|+.+.. ..+|+ .....+..+. ..++| +++|+||+|+. + +... ++...+....
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~--~--~~~v----~~~~~~~~~~-- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFD---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEG--V--ERYI----RDAHTFALSK-- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHH---HHHHHHHHHHHHHHHTTCC-EEEEEECGGGB--C--HHHH----HHHHHHHHTS--
T ss_pred cCCEEEEEEECCCCc-hhhHH---HHHHHHHHHHHHhccCCCC-EEEEEEccccc--c--cHHH----HHHHHHHHhc--
Confidence 589999999998740 00111 2222332222 24677 89999999983 2 1112 3344444432
Q ss_pred CccCCeeEEEeecccCccccccc
Q 011836 222 NVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 222 ~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
..++++++||++|.|+.+++
T Consensus 227 ---~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 227 ---KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp ---SSCCEEECBTTTTBSHHHHH
T ss_pred ---CCCeEEEEECCCCCCHHHHH
Confidence 13579999999999999853
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=122.67 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=60.2
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
..+..+.|+||||...-. ......+|++++|+|+..+.. .+ .+.. ..+..| .++++||+|+. +
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl~--~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDGD--L 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGG--G
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecCC--C
Confidence 356789999999964221 223568999999999987631 11 1111 224567 67899999983 2
Q ss_pred chHHHHHHHHHHHHHHHHhcCCC-ccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..........+...++...-. .....+++++||++|.|+.++.+
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 222222333443333321100 00135899999999999998643
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.28 E-value=8.8e-12 Score=126.20 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=88.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-eE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-TR 124 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~~ 124 (476)
..|+++|++|||||||+++|......+. + ....|.......+...+ ..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~-------------------------~------~~ftTl~p~~G~V~~~~~~~ 206 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA-------------------------P------YPFTTLSPNLGVVEVSEEER 206 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC-------------------------C------CTTCSSCCEEEEEECSSSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc-------------------------C------cccceecceeeEEEecCcce
Confidence 4689999999999999999842211000 0 01111222222334443 78
Q ss_pred EEEEeCCCCcCh-------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeeccCC
Q 011836 125 FTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~~-------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~ 196 (476)
++++|+||+.+. .......+..+|.+++++|+....++ .+. .-.++...++. ....| .++++||+|+.
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~aL~~~P-~ILVlNKlDl~ 282 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPALLRRP-SLVALNKVDLL 282 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHHHHHSC-EEEEEECCTTS
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHHhhcCC-EEEEEECCChh
Confidence 999999997432 22334455679999999999721110 000 01112222222 23567 67788999983
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+ .+ ....+...++..+ .+++++||+++.|+.++.+
T Consensus 283 --~--~~----~~~~l~~~l~~~g------~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 283 --E--EE----AVKALADALAREG------LAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp --C--HH----HHHHHHHHHHTTT------SCEEECCTTTCTTHHHHHH
T ss_pred --h--HH----HHHHHHHHHHhcC------CeEEEEECCCccCHHHHHH
Confidence 2 12 2233444444433 4799999999999998654
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.24 E-value=1.3e-11 Score=123.40 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=65.7
Q ss_pred CeEEEEEeCCCCcCh-------------HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011836 122 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 188 (476)
...++|+||||..++ ...+..++..+|++|+|+|+...... .....+.+..+...+.| +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~-----~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG-----GCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC-----CHHHHHHHHHhcccCCC-EEE
Confidence 568999999998776 55566678899999999986543210 02233344444445677 889
Q ss_pred EEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+||+|+.... .. ..+.+...... ...+++++|+.++.++.+.
T Consensus 209 V~nK~Dl~~~~--~~----~~~~~~~~~~~------~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 209 VLTKIDLMDKG--TD----AVEILEGRSFK------LKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEECGGGCCTT--CC----SHHHHTTSSSC------CSSCCEEECCCCHHHHHTT
T ss_pred EEeCCccCCCc--cc----HHHHHcCcccc------ccCCeEEEEECChHHhccC
Confidence 99999985322 11 11111111111 2357899999998887654
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.24 E-value=2.5e-12 Score=119.15 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=87.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEE-eee---EEE
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGR---AHF 118 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~-~~~---~~~ 118 (476)
++.++|+++|++|+|||||+++|+........-.+.. .+.+. +.. .+.. +..|.++. ... ..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~-----~d~~~-~~d-~~~~------~~~~~~~~~~~~~~~~~~ 94 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML-----GDVVS-KAD-YERV------RRFGIKAEAISTGKECHL 94 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE-----CSCCC-HHH-HHHH------HTTTCEEEECCCTTCSSC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe-----cCCCC-chh-HHHH------HhCCCcEEEecCCceeec
Confidence 4568999999999999999999986542110000000 00000 000 0000 01122211 100 011
Q ss_pred ----------EeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011836 119 ----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 119 ----------~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 188 (476)
.+.+..+.++||||+..--.. .-..++.+++|+|+..+. .. .+......+.| .++
T Consensus 95 ~~~~~~~~~~~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~--------~~---~~~~~~~~~~~-~ii 159 (221)
T 2wsm_A 95 DAHMIYHRLKKFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGD--------DV---VEKHPEIFRVA-DLI 159 (221)
T ss_dssp CHHHHHTTGGGGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCT--------TH---HHHCHHHHHTC-SEE
T ss_pred ccHHHHHHHHhcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcc--------hh---hhhhhhhhhcC-CEE
Confidence 234678999999995211000 012468899999998763 11 11223335677 678
Q ss_pred EEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 189 viNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
++||+|+... ....++++.+ .++.++ ...+++++||++|.|+.++.
T Consensus 160 v~NK~Dl~~~--~~~~~~~~~~----~~~~~~----~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 160 VINKVALAEA--VGADVEKMKA----DAKLIN----PRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp EEECGGGHHH--HTCCHHHHHH----HHHHHC----TTSEEEECBTTTTBTHHHHH
T ss_pred EEecccCCcc--hhhHHHHHHH----HHHHhC----CCCeEEEeecCCCCCHHHHH
Confidence 9999998311 0012333333 333332 13589999999999999853
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.23 E-value=1.8e-11 Score=122.05 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=62.1
Q ss_pred CeEEEEEeCCCCcC-------------hHHHHHHhhhhc-CEEEEEEECCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 011836 122 TTRFTILDAPGHKS-------------YVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 186 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------------~~~~~~~~~~~~-D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~~ 186 (476)
...++|+||||..+ +...+..++..+ +++++|+|+..+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999632 333444455544 45566778776532 2322 344555556777 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
++|+||+|+.... .. ..+.+......+. ....+++++||++|.|+.++.+
T Consensus 201 i~V~NK~Dl~~~~--~~----~~~~~~~~~~~l~---~~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 201 IGVITKLDLMDEG--TD----ARDVLENKLLPLR---RGYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEECGGGSCTT--CC----CHHHHTTCSSCCT---TCEEECCCCCHHHHHTTCCHHH
T ss_pred EEEeccccccCcc--hh----HHHHHhCCccccc---CCceEEEeCCcccccccccHHH
Confidence 9999999995332 10 0111111110110 0124789999999999987643
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.22 E-value=4.3e-11 Score=128.76 Aligned_cols=108 Identities=12% Similarity=0.011 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCcC-------------hHHHHHHhh-hhcCEEEEEEECCCCccccccCCCCchH-HHHHHHHHcCCce
Q 011836 121 ETTRFTILDAPGHKS-------------YVPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTK 185 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-------------~~~~~~~~~-~~~D~~ilVvda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~ 185 (476)
...+++|+||||... +...+..++ ..+|++++|+|+..+.. .+.. ..+..+...+.|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~l~ll~~L~~~g~p- 219 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR- 219 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHHHHHHHHHHhcCCC-
Confidence 345799999999543 222333333 47899999999998753 3443 556666667888
Q ss_pred EEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 186 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 ~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+|+|+||+|+...+.. ...+. ...+..+. .+..+++|+||++|.|+.++.+
T Consensus 220 vIlVlNKiDlv~~~~~---~~~il---~~~~~~l~---lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 220 TIGVITKLDLMDEGTD---ARDVL---ENKLLPLR---RGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp EEEEEECTTSSCTTCC---SHHHH---TTCSSCCS---SCEEECCCCCCEESSSSEEHHH
T ss_pred EEEEEeCcccCCcchh---hHHHH---HHHhhhhh---ccCCceEEecccccccchhHHH
Confidence 8999999999533211 01111 00000110 1235789999999999988754
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.18 E-value=4.3e-11 Score=119.26 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCe
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|.||+|||||+|+|......+ ....+.|++.....+.+.+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCCc
Confidence 45699999999999999999995322111 12356777777777888999
Q ss_pred EEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEe
Q 011836 124 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviN 191 (476)
++.|+||||..+ ....++..++.||++++|||+.++.. +.......+... ..| .++++|
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL~~~~~~l~~k~-~~i~~n 190 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKELEGVGIRLNKTP-PDILIK 190 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHHHHTTEEETCCC-CCEEEE
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHHHHhhHhhccCC-hhhhhh
Confidence 999999999532 34567778899999999999987531 212222233333 234 678999
Q ss_pred eccCC
Q 011836 192 KMDDH 196 (476)
Q Consensus 192 K~D~~ 196 (476)
|+|..
T Consensus 191 K~d~~ 195 (376)
T 4a9a_A 191 KKEKG 195 (376)
T ss_dssp ECSSS
T ss_pred Hhhhh
Confidence 99973
No 195
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.12 E-value=4.5e-10 Score=90.61 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCceEEEEEEEc-cCCeEEEEEEEeeeecCCCEEEEecCC-ceEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccce
Q 011836 272 NGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 272 ~~~~~~~i~~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 349 (476)
..|.++.|...+. -.|.++.|+|.+|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|... ++++
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~~ 107 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVKK 107 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCCT
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccCC
Confidence 4577777777332 128899999999999999999 888 899999999999999999999999999999876 8999
Q ss_pred eeEEec
Q 011836 350 GFVLSS 355 (476)
Q Consensus 350 G~vl~~ 355 (476)
|++|..
T Consensus 108 GdVLyv 113 (116)
T 1xe1_A 108 GDVLEI 113 (116)
T ss_dssp TCEEEE
T ss_pred CcEEEE
Confidence 999864
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.11 E-value=2.6e-10 Score=108.42 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=62.7
Q ss_pred CeEEEEEeCCCCcChHHH------HHHhhhhcCEEEEEEECCCCccccccCCCCchHH-H----HHHHHHcCCceEEEEE
Q 011836 122 TTRFTILDAPGHKSYVPN------MISGASQADIGVLVISARKGEFETGFEKGGQTRE-H----VMLAKTLGVTKLLLVV 190 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~------~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e-~----l~~~~~~~ip~~ivvi 190 (476)
.+.+.|+||||..++... +...+.. +++|+++|+..... ..... . .......++| +++|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 368999999998776422 2334556 89999999875421 11111 1 1223345788 78999
Q ss_pred eeccCCCCCchHHHHHHHHHH---HHH---------------------HHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 191 NKMDDHTVNWSKERYDEIESK---MTP---------------------FLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 191 NK~D~~~~~~~~~~~~~~~~~---l~~---------------------~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
||+|+... ...+++.+. +.. .+..++. ..+++++||++|.|+.++.
T Consensus 179 NK~D~~~~----~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 179 NKVDLLSE----EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp CCGGGCCH----HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHH
T ss_pred eccccccc----ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHH
Confidence 99998321 112222111 111 1233321 2478999999999999853
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=3.2e-10 Score=112.38 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=54.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC----
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
.+|+++|.+|+|||||+++|+...... ....+.|++.....+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v-------------------------------~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA-------------------------------ANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCceECceEEEEecCCccc
Confidence 689999999999999999996421000 001122332222222222
Q ss_pred -------------CeEEEEEeCCCCcChH-------HHHHHhhhhcCEEEEEEECCC
Q 011836 122 -------------TTRFTILDAPGHKSYV-------PNMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 -------------~~~~~liDtPGh~~~~-------~~~~~~~~~~D~~ilVvda~~ 158 (476)
...+.|+||||+.++. ...+..++.+|++++|+|+.+
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2579999999988764 234556789999999999986
No 198
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.06 E-value=7.5e-10 Score=110.20 Aligned_cols=136 Identities=11% Similarity=0.146 Sum_probs=75.1
Q ss_pred cEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCc---cccc-cCCCCchHHHHHHHHH----
Q 011836 109 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT---- 180 (476)
Q Consensus 109 ~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~---~e~~-~~~~~qt~e~l~~~~~---- 180 (476)
.|+......+..++..+.++||||++.|.+.+......++++|+|+|.++-. .|.. .+........+..+..
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 3444445567778899999999999999999999999999999999998721 0000 0000122333333322
Q ss_pred cCCceEEEEEeeccCCCCC------------c--hHHHHHHHHHHHHHHHHhcCCCc-cCCeeEEEeecccCcccccccc
Q 011836 181 LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 181 ~~ip~~ivviNK~D~~~~~------------~--~~~~~~~~~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.++| +|+++||+|+.... | ....+++..+-+...+..+.-.. ...+.++++||+++.|+.++++
T Consensus 267 ~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 267 SNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp TTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred CCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 2566 99999999983100 0 00112333333322222221100 1246789999999999998643
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.06 E-value=5.5e-10 Score=111.26 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCcCh-------HHHHHHhhhhcCEEEEEEECCC
Q 011836 122 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 ~~~~~liDtPGh~~~-------~~~~~~~~~~~D~~ilVvda~~ 158 (476)
...+.|+||||..++ ....+..++.+|++++|+|+.+
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998664 3456677899999999999986
No 200
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.06 E-value=1.1e-09 Score=108.71 Aligned_cols=137 Identities=14% Similarity=0.153 Sum_probs=84.8
Q ss_pred ccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCcc---ccc-cCCCCchHHHHHHHHH---
Q 011836 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF---ETG-FEKGGQTREHVMLAKT--- 180 (476)
Q Consensus 108 g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~---e~~-~~~~~qt~e~l~~~~~--- 180 (476)
..|+......+..++..+.++||+|++.|.+.+......++++|+|+|.++-.. |.. .+........+..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 345555556677788999999999999999999999999999999999987310 000 0000123333333332
Q ss_pred -cCCceEEEEEeeccCCCCC------------ch-HHHHHHHHHHHHHHHHhcCCC-ccCCeeEEEeecccCcccccccc
Q 011836 181 -LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 181 -~~ip~~ivviNK~D~~~~~------------~~-~~~~~~~~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
.++| +|++.||+|+.... +. ....++..+.+...+..+... ....+.++.+||++|.|+.++++
T Consensus 258 ~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 258 FTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 2566 99999999983100 00 001233333333333333211 01357899999999999998643
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.01 E-value=1.7e-09 Score=105.28 Aligned_cols=160 Identities=14% Similarity=0.208 Sum_probs=72.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEe--CC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ET 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~ 122 (476)
..+|+++|+.|+|||||+++|... +.....++.- .| .....++........+.. ..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~~-------~g--------------~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT-DLYPERVISG-------AA--------------EKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---CC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC-CccCCCCccc-------CC--------------cccCCcceEeeEEEEecCCCcc
Confidence 478899999999999999998521 1111100000 00 000000111111111111 23
Q ss_pred eEEEEEeCCCC-------cChHHHHH-------Hhhhh-------------cCEEEEEEECCCCccccccCCCCchHHHH
Q 011836 123 TRFTILDAPGH-------KSYVPNMI-------SGASQ-------------ADIGVLVISARKGEFETGFEKGGQTREHV 175 (476)
Q Consensus 123 ~~~~liDtPGh-------~~~~~~~~-------~~~~~-------------~D~~ilVvda~~g~~e~~~~~~~qt~e~l 175 (476)
..++++||||. +.|..... ..++. +++++++++...+- ++ +...+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~----Ld--~~~~~~l 149 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG----LK--PLDVAFM 149 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS----CC--HHHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccC----CC--HHHHHHH
Confidence 57899999998 33322111 22221 34456666544321 22 2333333
Q ss_pred HHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 176 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 176 ~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..+. .+++ +++|+||.|+.. .......++++..+++..+ ++++++||++| |+++++.
T Consensus 150 ~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~~------~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 150 KAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHTT------CCCCCCC----------CH
T ss_pred HHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHcC------CeEEecCCccc-cccHHHH
Confidence 3332 2456 899999999832 2233444566667777664 47899999999 9988643
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=4.8e-09 Score=103.61 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=59.6
Q ss_pred eCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 011836 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 199 (476)
..+..+.|+||||..+--. .....+|++++|+|+..+.- .. ...+.+ ..++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~---~i~~~i-----~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQ---GIKKGI-----FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTTH-----HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HH---HHHHHH-----hccc-cEEEEEchhccCc-
Confidence 3578999999999654221 22468999999999865421 00 000000 1234 3567899997321
Q ss_pred chHHHHHHHHHHHHHHHHhcCCC-ccCCeeEEEeecccCcccccccc
Q 011836 200 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
........+.+...+..+.-. .....+++++||++|.|+.++.+
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 111222333343333222200 00024789999999999988643
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.96 E-value=6.1e-09 Score=101.85 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=85.8
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECC-------CCccccccCCCCchHHHHHHHH
Q 011836 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLAK 179 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~-------~g~~e~~~~~~~qt~e~l~~~~ 179 (476)
+..|+......++..+..+.++||+|++.|.+.+....+.++++|+|+|.+ +... .+....+...+..+.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~---~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN---ENRMEESKALFRTII 227 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTT---SBHHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccccc---HhHHHHHHHHHHHHh
Confidence 445555566678888999999999999999999999999999999999875 2110 000012233333332
Q ss_pred H----cCCceEEEEEeeccCCCCC------------ch--HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccc
Q 011836 180 T----LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 241 (476)
Q Consensus 180 ~----~~ip~~ivviNK~D~~~~~------------~~--~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~ 241 (476)
. .++| ++++.||+|+.... |. ...+++..+-+...+..+.-.....+.+..+||+++.|+.
T Consensus 228 ~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 TYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 2 2566 99999999983210 00 0123444444444444433222235678889999999998
Q ss_pred ccc
Q 011836 242 TRV 244 (476)
Q Consensus 242 ~~~ 244 (476)
..+
T Consensus 307 ~vF 309 (327)
T 3ohm_A 307 FVF 309 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 853
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=2.7e-09 Score=108.05 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=74.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC--C
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
.++|+++|+.|+|||||+++|+...-.... .+... .+ ....+........+... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~------------~~~~~------~~-----~~~t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE------------YPGPS------HR-----IKKTVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC------------CCSCC----------------CCEEEEEECC------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC------------CCCcc------cC-----CccceeeeeEEEEEecCCcc
Confidence 467899999999999999998532110000 00000 00 00001111111111112 2
Q ss_pred eEEEEEeCCCCcChHH------HHH--------Hh-----------hhh--cCEEEEEEECC-CCccccccCCCCchHHH
Q 011836 123 TRFTILDAPGHKSYVP------NMI--------SG-----------ASQ--ADIGVLVISAR-KGEFETGFEKGGQTREH 174 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~------~~~--------~~-----------~~~--~D~~ilVvda~-~g~~e~~~~~~~qt~e~ 174 (476)
..++++||||...+.. .+. .+ +.. +|++|+++++. .+. . +...+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-----~--~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-----K--PLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-----C--HHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-----C--HHHHHH
Confidence 4789999999876532 111 01 122 34455655554 342 1 333445
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 175 l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
+..+.. +++ +|+|+||+|+. ....+...++.+...+...+ ++++.+|++++.++.+
T Consensus 161 lk~L~~-~v~-iIlVinK~Dll----~~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~ 216 (418)
T 2qag_C 161 MKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENK 216 (418)
T ss_dssp HHHHTT-TSE-EEEEEESTTSS----CHHHHHHHHHHHHHHHHHHT------CCCCCCC---------
T ss_pred HHHHhc-cCc-EEEEEEcccCc----cHHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHH
Confidence 554443 677 99999999983 23456666677777777765 4688999999888775
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.90 E-value=1e-08 Score=105.91 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCcC----hHHHHHHh--hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~----~~~~~~~~--~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.+.||||||... +...+... +..+|.+++|+|+..+. .....+..+... +|-.+|++||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 678899999999763 33333222 23789999999999873 233333333221 441268999999
Q ss_pred CC
Q 011836 195 DH 196 (476)
Q Consensus 195 ~~ 196 (476)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 84
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.85 E-value=8.5e-09 Score=95.49 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=55.9
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCch
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 201 (476)
+..+.++|++|...... ..-...+..+.|+|+..+.. ... . ....++.| .++++||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~-------~~~-~---~~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDD-------TIE-K---HPGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTT-------TTT-T---CHHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchh-------hHh-h---hhhHhhcC-CEEEEeccccCch--h
Confidence 34789999999422110 11124577888898754421 011 0 11224677 7889999998211 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
+..+ +++...++.++ ...+++++||++|.|+.++.
T Consensus 181 ~~~~----~~~~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 181 GADI----KKMENDAKRIN----PDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp TCCH----HHHHHHHHHHC----TTSEEEECCTTTCTTHHHHH
T ss_pred HHHH----HHHHHHHHHhC----CCCeEEEEEecCCCCHHHHH
Confidence 0012 22333444332 13589999999999999853
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.84 E-value=2e-08 Score=98.63 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=83.8
Q ss_pred cccEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCC---ccccc-cCCCCchHHHHHHHHH--
Q 011836 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETG-FEKGGQTREHVMLAKT-- 180 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g---~~e~~-~~~~~qt~e~l~~~~~-- 180 (476)
+..|+......+...+..+.++||+|++.|.+.+....+.++++|+|+|.++- ..|.. .+........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 44566666677888899999999999999999999999999999999998721 00000 0000122333333322
Q ss_pred --cCCceEEEEEeeccCCCCC------------ch-HHHHHHHHHHHHHHH------HhcCCCcc-----------CCee
Q 011836 181 --LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFL------KASGYNVK-----------KDVQ 228 (476)
Q Consensus 181 --~~ip~~ivviNK~D~~~~~------------~~-~~~~~~~~~~l~~~l------~~~g~~~~-----------~~~~ 228 (476)
.++| +|++.||+|+.... +. ...+++..+.+...+ ..+..... ..+.
T Consensus 225 ~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred ccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 3566 99999999983110 00 001334444444433 22221111 2467
Q ss_pred EEEeecccCccccccc
Q 011836 229 FLPISGLMGLNMKTRV 244 (476)
Q Consensus 229 iipiSa~~g~~i~~~~ 244 (476)
+..+||++..|+...+
T Consensus 304 ~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 304 TNPTNATDGSNIKRVF 319 (340)
T ss_dssp EEEECTTCHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHH
Confidence 8899999999998754
No 208
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.78 E-value=9e-08 Score=96.07 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred cEEEeeeEEEEeCCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCC---ccc----cccCCCCchHHHHHHHHH-
Q 011836 109 KTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFE----TGFEKGGQTREHVMLAKT- 180 (476)
Q Consensus 109 ~ti~~~~~~~~~~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g---~~e----~~~~~~~qt~e~l~~~~~- 180 (476)
.|+......+...+..+.++||+|++.|...+....+.++++|+|+|.++- ..| ..| ......+..+..
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~---~e~~~~~~~i~~~ 279 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL---QEALNLFKSIWNN 279 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH---HHHHHHHHHHHTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchH---HHHHHHHHHHHhc
Confidence 344444556777889999999999999999999999999999999999871 000 001 122333333332
Q ss_pred ---cCCceEEEEEeeccC
Q 011836 181 ---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 ---~~ip~~ivviNK~D~ 195 (476)
.++| +|++.||+|+
T Consensus 280 ~~~~~~p-iiLvgNK~DL 296 (402)
T 1azs_C 280 RWLRTIS-VILFLNKQDL 296 (402)
T ss_dssp TTCSSCC-EEEEEECHHH
T ss_pred ccCCCCe-EEEEEEChhh
Confidence 2466 9999999998
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=5.6e-08 Score=98.06 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=78.8
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeE
Q 011836 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
+.+.......+++++|+.|+|||||++.|+... +.... +.. ...+.+......
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~--------------------~~~-----~~~~~~~~~i~~ 86 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEP--------------------ATH-----TQPGVQLQSNTY 86 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEE
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCc--------------------CCC-----CCccceEeeEEE
Confidence 444455556789999999999999999985321 11000 000 011223322222
Q ss_pred EEEeCC--eEEEEEeCCCCcChH-------------HHH----HHhh---h-------h--cC-EEEEEEECCCCccccc
Q 011836 117 HFETET--TRFTILDAPGHKSYV-------------PNM----ISGA---S-------Q--AD-IGVLVISARKGEFETG 164 (476)
Q Consensus 117 ~~~~~~--~~~~liDtPGh~~~~-------------~~~----~~~~---~-------~--~D-~~ilVvda~~g~~e~~ 164 (476)
.+.... ..++++|+||..... ... +... . . .| ++++|+|+..+..
T Consensus 87 v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--- 163 (427)
T 2qag_B 87 DLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--- 163 (427)
T ss_dssp EEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C---
T ss_pred EeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC---
Confidence 222222 368999999965431 111 1111 1 1 23 3566778877642
Q ss_pred cCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEee
Q 011836 165 FEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 233 (476)
Q Consensus 165 ~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiS 233 (476)
....+.+..+. .++| +|+|+||+|.. ........+..+...++..| ++++.+|
T Consensus 164 ----~~Dieilk~L~-~~~~-vI~Vi~KtD~L----t~~E~~~l~~~I~~~L~~~g------i~I~~is 216 (427)
T 2qag_B 164 ----SLDLVTMKKLD-SKVN-IIPIIAKADAI----SKSELTKFKIKITSELVSNG------VQIYQFP 216 (427)
T ss_dssp ----HHHHHHHHHTC-SCSE-EEEEESCGGGS----CHHHHHHHHHHHHHHHBTTB------CCCCCCC
T ss_pred ----HHHHHHHHHHh-hCCC-EEEEEcchhcc----chHHHHHHHHHHHHHHHHcC------CcEEecC
Confidence 23344444443 4566 99999999983 23445666666666565544 3455555
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=1.6e-09 Score=108.40 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=69.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+|+|+..... . .+........|.|.+.....+ . ..+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~--------------~-----------~~~~~~~~~~gtT~~~~~~~~--~-~~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATG--------------K-----------GNVITTSYFPGTTLDMIEIPL--E-SGA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHH--------------T-----------TCCCEEEECTTSSCEEEEEEC--S-TTC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccC--------------C-----------ccceeecCCCCeEEeeEEEEe--C-CCe
Confidence 58999999999999999999743100 0 000011123455555443332 2 348
Q ss_pred EEEeCCCCcCh-------HHHHHHhh---hhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 126 TILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 126 ~liDtPGh~~~-------~~~~~~~~---~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.++||||..+. ....+..+ ...|..++++++....+..++. .+.++...+.| +++++||+|.
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-------~l~~l~~~~~~-~~~v~~k~d~ 286 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA-------RLDYIKGGRRS-FVCYMANELT 286 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE-------EEEEEESSSEE-EEEEECTTSC
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE-------EEEEccCCCce-EEEEecCCcc
Confidence 99999995321 11222223 5789999999997654432222 12233345667 8999999998
Q ss_pred C
Q 011836 196 H 196 (476)
Q Consensus 196 ~ 196 (476)
.
T Consensus 287 ~ 287 (369)
T 3ec1_A 287 V 287 (369)
T ss_dssp E
T ss_pred c
Confidence 4
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.59 E-value=2.8e-09 Score=106.57 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=81.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCCeEE
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+|+|+...... . .+........|.|.+.....+ . ..+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~-----------------~-------~~~~~~~~~~gtT~~~~~~~~--~-~~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDE-----------------T-------ENVITTSHFPGTTLDLIDIPL--D-EES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTS-----------------C-------SSCCEEECCC----CEEEEES--S-SSC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccc-----------------c-------ccceecCCCCCeecceEEEEe--c-CCe
Confidence 689999999999999999997542100 0 000011123456655443332 2 238
Q ss_pred EEEeCCCCcCh-------HHHHHHh---hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 126 TILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 126 ~liDtPGh~~~-------~~~~~~~---~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.++||||..+. ....+.. ....+..++++++....+..++.. +..+...+.| +++++||+|.
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d~ 285 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRLT 285 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTSC
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCccc
Confidence 99999995321 1222222 357889999999976554333221 2223344667 9999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccc
Q 011836 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~ 242 (476)
.... ..+...+.++ +.+|. .+.|.++....++.+
T Consensus 286 ~~~~----~~~~~~~~~~---~~~g~------~l~p~~~~~~~~~~~ 319 (368)
T 3h2y_A 286 IHRT----KLEKADELYK---NHAGD------LLSPPTPEELENMPE 319 (368)
T ss_dssp EEEE----EHHHHHHHHH---HHBTT------TBCSSCHHHHHTSCC
T ss_pred cccc----cHHHHHHHHH---HHhCC------ccCCCchhhHhhccC
Confidence 4321 2222333222 33332 466777655555544
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.56 E-value=5.1e-08 Score=97.48 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=49.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeC-
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+++|.+|+|||||+++|....-.. ....+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~-------------------------------~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASA-------------------------------ENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCccccCceeEEEEECC
Confidence 345789999999999999999995321100 011223333222222221
Q ss_pred ----------------CeEEEEEeCCCCcChHH-------HHHHhhhhcCEEEEEEECCC
Q 011836 122 ----------------TTRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~~~~-------~~~~~~~~~D~~ilVvda~~ 158 (476)
...+.|+||||..++.. ..+..++.+|++++|+|+.+
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 24699999999877543 56677899999999999975
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.50 E-value=6.5e-07 Score=91.05 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC-ceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i-p~~ivviNK~ 193 (476)
.++.+.||||||....-..+... +..+|.+++|+|+..|. .....+.... .++ +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 56789999999976542222221 23689999999998762 2222222222 234 5367899999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 249 D~ 250 (432)
T 2v3c_C 249 DG 250 (432)
T ss_dssp SS
T ss_pred CC
Confidence 97
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.50 E-value=4.8e-07 Score=86.33 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=44.2
Q ss_pred cCEEEEEEECC-CCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCC
Q 011836 147 ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 147 ~D~~ilVvda~-~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~ 221 (476)
++++++++|.. .|. .+...+.+..+... ++ +|+++||+|.. ..+.....+..+...+...+.
T Consensus 112 al~~lllldep~~gL-------~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l----t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 112 VHCCLYFISPTGHSL-------RPLDLEFMKHLSKV-VN-IIPVIAKADTM----TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CCEEEEEECCCSSSC-------CHHHHHHHHHHHTT-SE-EEEEETTGGGS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeEEEecCCCcC-------CHHHHHHHHHHHhc-Cc-EEEEEeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 68899999965 453 25566667666665 65 99999999983 345566777777777777654
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.50 E-value=1.9e-06 Score=86.80 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=85.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH----hCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEE
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL----SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
....++++|+.|||||||++.|+.. .|.+.- +..+..+ ++. .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------------------------~g~~~t~-~~~-------v~q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------------------------GVVEVTM-ERH-------PYK 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------------------------CC----C-CCE-------EEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------------------------CCeecce-eEE-------ecc
Confidence 3458999999999999999999641 222211 1100000 111 122
Q ss_pred eCC-eEEEEEeCCCCcC---hHHHHHH--hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeec
Q 011836 120 TET-TRFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~-~~~~liDtPGh~~---~~~~~~~--~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 193 (476)
... ..++++|+||... -....+. ++...|..++ +|...+. .|-...+..+...+.| +++|+||.
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecC
Confidence 222 3689999999531 1333333 2344565554 7765431 3555555666667887 89999999
Q ss_pred cCCC-----CCchHHHHHHHHHHHHHHH----HhcCCCccCCeeEEEeec--ccCccccccc
Q 011836 194 DDHT-----VNWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRV 244 (476)
Q Consensus 194 D~~~-----~~~~~~~~~~~~~~l~~~l----~~~g~~~~~~~~iipiSa--~~g~~i~~~~ 244 (476)
|+.- ...+....+++.+.+..+. .+.|.. ...++++|+ ..+.|++++.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHH
Confidence 9721 0101111223334444433 333322 237899999 5666677643
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.49 E-value=1.2e-06 Score=88.86 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHH--HHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~--~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.+.||||||.... ...+ +..+..+|.++||+||..|- .....+..... .++-..|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4578999999995432 2221 12234689999999998762 33333333332 2232458999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.... ...+ ..+.... ..|+..++. |++++++
T Consensus 251 ~~~~------gG~~----ls~~~~~------g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 251 GSAK------GGGA----LSAVAAT------GAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp SCSS------HHHH----HHHHHTT------CCCEEEEEC--SSSTTCE
T ss_pred Cccc------ccHH----HHHHHHH------CCCEEEEEc--CCChHHh
Confidence 8321 1111 1223333 346777775 8988775
No 217
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=1.3e-06 Score=88.42 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCcC------hHHHHHH--hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEe
Q 011836 121 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 191 (476)
Q Consensus 121 ~~~~~~liDtPGh~~------~~~~~~~--~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviN 191 (476)
.++.+.|+||||... +...+.. .+..+|.++||+|+..|- .....+.... ..++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999654 3333332 223579999999999762 3334443333 3344 467999
Q ss_pred eccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
|+|.. +. .....+ .....+ .|+..++. |++++++
T Consensus 247 KlD~~-a~-----~G~als----~~~~~g------~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGT-AK-----GGGALS----AVVATG------ATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGC-SC-----HHHHHH----HHHHHT------CEEEEEEC--CSSSSCE
T ss_pred ccccc-cc-----chHHHH----HHHHHC------CCEEEEEC--CCChHhC
Confidence 99973 21 112222 222222 47777775 8888654
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.30 E-value=1.1e-06 Score=88.04 Aligned_cols=85 Identities=19% Similarity=0.117 Sum_probs=55.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhhcccEEEeeeEEEEeCC-
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
+..+|+++|++|+|||||+++|+....... ....+.|++.....+...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEECCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeCCc
Confidence 357899999999999999999964211000 0012223333222222222
Q ss_pred ----------------eEEEEEeCCCCcC-------hHHHHHHhhhhcCEEEEEEECCC
Q 011836 123 ----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ----------------~~~~liDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~ 158 (476)
..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 69 r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 69 RFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred chhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999433 34466777889999999999865
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=1e-05 Score=78.09 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=57.2
Q ss_pred CCeEEEEEeCCCCcC--hHHHHH------HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEee
Q 011836 121 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~~~~~liDtPGh~~--~~~~~~------~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 192 (476)
.++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999776 322222 345579999999999764 234444443332 34435679999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+|.. . +...+ ..+....+ .|+..++ .|++++++
T Consensus 249 ~D~~-~-----~~g~~----~~~~~~~~------~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 249 MDGT-A-----KGGGA----LSAVAATG------ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGGC-T-----THHHH----HHHHHTTT------CCEEEEE--CSSSTTCE
T ss_pred CCCC-c-----chHHH----HHHHHHHC------cCEEEEe--CCCChhhc
Confidence 9972 1 11111 22333333 3666665 58888664
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=1.1e-06 Score=85.18 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchH
Q 011836 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 202 (476)
..+.++|+ +++|...+..+++.+|++|+|+|+.+..+ .+ ....+.+..+...++| +++|+||+|+. + .
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~--~--~ 130 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLY--D--E 130 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGC--C--H
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcC--C--c
Confidence 37899999 88887777778899999999999987531 01 1223344445556787 88999999993 2 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
... +++..++..++- . .+++++||++|.|+.++.
T Consensus 131 ~~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 131 DDL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HHH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHH
T ss_pred hhH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHH
Confidence 112 223333433320 1 479999999999998864
No 221
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.13 E-value=3.4e-06 Score=83.42 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCC-------CccccccCCCCchHHHHHHHHH----cCCceEEEE
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAKT----LGVTKLLLV 189 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-------g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivv 189 (476)
....+.++||+|++.|.+.+....+.+|++|+|+|.++ ......| ......+..+.. .++| +|++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~~~i~~~~~~~~~p-iiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELFDWVLKQPCFEKTS-FMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHHHHHHTCGGGSSCE-EEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHHHHHHhccccCCCe-EEEE
Confidence 34789999999999999999999999999999999861 1000001 122333333322 2566 9999
Q ss_pred EeeccC
Q 011836 190 VNKMDD 195 (476)
Q Consensus 190 iNK~D~ 195 (476)
.||+|+
T Consensus 257 gNK~DL 262 (354)
T 2xtz_A 257 LNKFDI 262 (354)
T ss_dssp EECHHH
T ss_pred EECcch
Confidence 999997
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.11 E-value=7.4e-06 Score=78.54 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=59.5
Q ss_pred EEeCCCCc-ChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHH
Q 011836 127 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 127 liDtPGh~-~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 205 (476)
+-+.|||. +..+.+...+..+|+++.|+||..+.. ........++ .+.| .++++||+|+ .+ .+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL--~~--~~~~ 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADK--AD--AAVT 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGG--SC--HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHHH--CCCC-EEEEEECccc--CC--HHHH
Confidence 45689997 567788888999999999999998753 1111111111 3455 7899999999 33 2222
Q ss_pred HHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 206 ~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+....+++..| ++++++||++|.|+.++.+
T Consensus 69 ----~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 69 ----QQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp ----HHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred ----HHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 22333444433 4789999999999988543
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.04 E-value=3.8e-05 Score=75.08 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=55.5
Q ss_pred CeEEEEEeCCCCcC----hHHHHHH--hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeecc
Q 011836 122 TTRFTILDAPGHKS----YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~~~~~liDtPGh~~----~~~~~~~--~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D 194 (476)
++.+.++||+|... +...+.. .+-.+|-.++++|+..+ .+..+.+.... ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 45677899999643 3322221 12358999999998876 34455554444 45665 57899999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
.. +... .+. ..+...+ .|+..++ +|++++++
T Consensus 280 ~~-a~~G-----~~l----~~~~~~~------~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 280 AD-ARGG-----AAL----SISYVID------APILFVG--VGQGYDDL 310 (328)
T ss_dssp GC-SCCH-----HHH----HHHHHHT------CCEEEEE--CSSSTTCE
T ss_pred Cc-cchh-----HHH----HHHHHHC------CCEEEEe--CCCCcccc
Confidence 62 2111 111 2333333 3677777 68888764
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.03 E-value=2.5e-06 Score=89.67 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=23.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...+..+|+|+|.+|+|||||+|+|+.
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcC
Confidence 456778999999999999999999953
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.02 E-value=1.1e-05 Score=81.94 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHh------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.||||||...+...+... +..+|.+++|+|+..+. .....+.... .+++. -|++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 46789999999976553333322 34789999999998652 2333332222 34443 3689999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.88 E-value=9.4e-06 Score=77.81 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
....+|+++|.+|+|||||+|+|+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 456899999999999999999996
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.82 E-value=1.2e-05 Score=77.91 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=61.9
Q ss_pred CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHH
Q 011836 133 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 212 (476)
Q Consensus 133 h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l 212 (476)
+++|....-..++.+|.+++|+|+.+..+. + ....+.+..+...++| +++|+||+|+ .+ +..++ ..++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL--~~--~~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDL--LN--EEEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccC--CC--ccccH-HHHHH
Confidence 444433333467899999999999976421 1 1223455556667888 7899999999 32 11111 12334
Q ss_pred HHHHHhcCCCccCCeeEEEeecccCcccccccc
Q 011836 213 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 213 ~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
..+++..| ++++++||++|.|++++.+
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 44555554 3799999999999988654
No 228
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.82 E-value=4.2e-05 Score=69.02 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=57.8
Q ss_pred CCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHH----HH-H---cCCceEEEEEeec-cCCCCCchH
Q 011836 132 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AK-T---LGVTKLLLVVNKM-DDHTVNWSK 202 (476)
Q Consensus 132 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~----~~-~---~~ip~~ivviNK~-D~~~~~~~~ 202 (476)
|+..+...+-.+...+|++|+|||+.+... ...++.+.. +. . .++| ++|+.||. |++++- +.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am-s~ 181 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM-PC 181 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC-CH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC-CH
Confidence 788888889999999999999999987632 124444421 21 1 3677 88999995 776542 22
Q ss_pred HHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
. ++.+.+. |..+ . ..+.+.++||++|+|+.+-
T Consensus 182 ~---EI~e~L~--L~~l--~--R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 182 F---YLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp H---HHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred H---HHHHHcC--CcCC--C--CCEEEEEeECCCCcCHHHH
Confidence 2 2333221 2222 1 3678999999999998773
No 229
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.78 E-value=2.3e-05 Score=61.40 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=66.9
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEeccCCccccceee
Q 011836 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 277 ~~i~~~~--~~~G~v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 351 (476)
..|.++| +..|.++.++|.+|.++.+..+++...+. ..++.|+.++..++.++.+|.-|++.|.+. .|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 3455556 35699999999999999999999999883 468999999999999999999999999976 4799999
Q ss_pred EEecC
Q 011836 352 VLSSV 356 (476)
Q Consensus 352 vl~~~ 356 (476)
+|-..
T Consensus 87 ~Ie~y 91 (99)
T 1d1n_A 87 VIEAY 91 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98653
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.72 E-value=4.8e-05 Score=75.80 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=63.7
Q ss_pred EEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHH
Q 011836 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 204 (476)
+.-+++| +++|.+........+|++++|+|+.+... .+. ....+.+ .+.| +++|+||+|+...+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~--~~l~~~l-----~~~p-iilV~NK~DLl~~~~~--- 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFI--PGLPRFA-----ADNP-ILLVGNKADLLPRSVK--- 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCC--SSHHHHC-----TTSC-EEEEEECGGGSCTTCC---
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--chh--hHHHHHh-----CCCC-EEEEEEChhcCCCccC---
Confidence 4445555 77888877777789999999999987531 111 2222221 2556 8899999999543222
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
.+.+.+.+...++..|+. ..+++++||++|.|+.++.
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHH
Confidence 233444555567777763 2378999999999998854
No 231
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.69 E-value=0.0001 Score=59.74 Aligned_cols=80 Identities=11% Similarity=0.188 Sum_probs=68.4
Q ss_pred eEEEEEEEc--cCCe---EEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEeccCCcc-c
Q 011836 276 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE-D 346 (476)
Q Consensus 276 ~~~i~~~~~--~~G~---v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~~~-~ 346 (476)
+..|.++|+ ..|. ++.++|..|.++.+..+++...+. ..++.|+.++.+++.++.+|.-|+|.|.+. . |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--niD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CCC
Confidence 566777773 4577 899999999999999999999884 457999999999999999999999999866 4 7
Q ss_pred cceeeEEecCC
Q 011836 347 ILSGFVLSSVA 357 (476)
Q Consensus 347 i~~G~vl~~~~ 357 (476)
++.||+|-...
T Consensus 90 ik~GDiIE~ye 100 (120)
T 2crv_A 90 FKPGDQVICYE 100 (120)
T ss_dssp CCTTEEEEEEC
T ss_pred CCCCCEEEEEE
Confidence 99999997544
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.69 E-value=2.6e-05 Score=73.84 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCcCh-HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHH
Q 011836 131 PGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 209 (476)
Q Consensus 131 PGh~~~-~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~ 209 (476)
|||... .+.+...+..+|+++.|+||..+..... ... + + + +.| .++++||+|+ ++ .+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l-~-l--l---~k~-~iivlNK~DL--~~--~~~~---- 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGV-D-F--S---RKE-TIILLNKVDI--AD--EKTT---- 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTS-C-C--T---TSE-EEEEEECGGG--SC--HHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHH-H-h--c---CCC-cEEEEECccC--CC--HHHH----
Confidence 898765 4577778899999999999998753211 111 1 1 1 777 7899999999 43 2222
Q ss_pred HHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 210 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 210 ~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+....++++.|+ ++ ++||.+|.|+.++
T Consensus 65 ~~~~~~~~~~g~------~v-~iSa~~~~gi~~L 91 (262)
T 3cnl_A 65 KKWVEFFKKQGK------RV-ITTHKGEPRKVLL 91 (262)
T ss_dssp HHHHHHHHHTTC------CE-EECCTTSCHHHHH
T ss_pred HHHHHHHHHcCC------eE-EEECCCCcCHHHH
Confidence 223334554443 56 9999999998774
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.62 E-value=0.00012 Score=74.79 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCcChHHHHH-------Hhhh-----hcCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcCCceEE
Q 011836 121 ETTRFTILDAPGHKSYVPNMI-------SGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~-------~~~~-----~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~i 187 (476)
.++.+.||||+|........+ +.++ .++-++||+|+..|- .....+... ..+++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC--E
Confidence 345688999999654322221 1111 267899999998762 223333333 346776 3
Q ss_pred EEEeeccC
Q 011836 188 LVVNKMDD 195 (476)
Q Consensus 188 vviNK~D~ 195 (476)
+++||+|.
T Consensus 443 vIlTKLD~ 450 (503)
T 2yhs_A 443 ITLTKLDG 450 (503)
T ss_dssp EEEECGGG
T ss_pred EEEEcCCC
Confidence 68999996
No 234
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.62 E-value=4.5e-05 Score=75.94 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=62.4
Q ss_pred CcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHH
Q 011836 133 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 212 (476)
Q Consensus 133 h~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l 212 (476)
.++|.+.+....+.+|++++|+|+.+.. ..+. ....+. ..+.| +++|+||+|+...... .+++.+.+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~--~~l~~~-----~~~~p-~ilV~NK~DL~~~~~~---~~~~~~~l 122 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN--GSWL--PGLHRF-----VGNNK-VLLVGNKADLIPKSVK---HDKVKHWM 122 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCC--TTHHHH-----SSSSC-EEEEEECGGGSCTTSC---HHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc--ccHH--HHHHHH-----hCCCc-EEEEEEChhcCCcccC---HHHHHHHH
Confidence 5678777767777888999999998732 1111 112221 12566 8899999999543222 22344445
Q ss_pred HHHHHhcCCCccCCeeEEEeecccCccccccc
Q 011836 213 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 213 ~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~ 244 (476)
...++..|+. ..+++++||++|.|+.++.
T Consensus 123 ~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 123 RYSAKQLGLK---PEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp HHHHHHTTCC---CSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHcCCC---cccEEEEeCCCCcCHHHHH
Confidence 5556666653 2378999999999998854
No 235
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.54 E-value=0.00011 Score=70.93 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred hhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCC
Q 011836 143 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 143 ~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 222 (476)
.+..+|.+++|+|+..+.+. .....+.+..+...++| .++|+||+|+... . ..++..+.+.+.++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~-----~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~--~--~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDLIED--Q--DTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGGCCC--H--HHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEECCccCch--h--hhHHHHHHHHHHHHhCCC-
Confidence 47899999999999987641 01223333444557888 6889999999432 1 111123344455666664
Q ss_pred ccCCeeEEEeecccCcccccccc
Q 011836 223 VKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 223 ~~~~~~iipiSa~~g~~i~~~~~ 245 (476)
+++++||.+|.|+.++.+
T Consensus 152 -----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp -----CEEECCHHHHTTCTTTGG
T ss_pred -----eEEEEecCCCCCHHHHHh
Confidence 689999999999887643
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.54 E-value=0.00019 Score=69.37 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCcChHHHHHHh------------hhhcCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcCCceEEE
Q 011836 122 TTRFTILDAPGHKSYVPNMISG------------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~------------~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~iv 188 (476)
+..+.++||+|........... +..++.+++++|+..+ ....+.+..+ ...++. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~---------~~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG---------QNGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC---------THHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH---------HHHHHHHHHHHHHcCCc--EE
Confidence 3456799999964432222211 1248889999999876 2344444433 345775 57
Q ss_pred EEeeccC
Q 011836 189 VVNKMDD 195 (476)
Q Consensus 189 viNK~D~ 195 (476)
++||.|.
T Consensus 253 ivTh~d~ 259 (304)
T 1rj9_A 253 IVTKLDG 259 (304)
T ss_dssp EEECTTS
T ss_pred EEECCcc
Confidence 9999997
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.47 E-value=0.00041 Score=67.06 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+...|+++|.+|+||||++..|..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 4456889999999999999998864
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.42 E-value=5e-05 Score=71.88 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
.+++++|.+|+|||||+|+|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 689999999999999999995
No 239
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.40 E-value=0.00029 Score=66.71 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=62.4
Q ss_pred CCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHH----HHH-H--H-cCCceEEEEEee-ccCCCCCc
Q 011836 130 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA-K--T-LGVTKLLLVVNK-MDDHTVNW 200 (476)
Q Consensus 130 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l----~~~-~--~-~~ip~~ivviNK-~D~~~~~~ 200 (476)
..|+..+...+-.+...+|++|+|||+.+... ...++.+ .++ . . .++| ++|+.|| .|++++-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-------leak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-------CCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC-
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-------HHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC-
Confidence 45788999999999999999999999988642 1233322 222 1 1 4788 8899997 5886542
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCeeEEEeecccCcccccc
Q 011836 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~ 243 (476)
+.. ++.+.+. |..+ . ....+.++||++|+|+.+-
T Consensus 265 s~~---EI~e~L~--L~~l--~--r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 265 PCF---YLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp CHH---HHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred CHH---HHHHHcC--CccC--C--CcEEEEecccCCCcCHHHH
Confidence 222 2333221 2222 1 3678999999999999874
No 240
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.38 E-value=0.0004 Score=73.70 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...++++|+.|||||||++.|..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHS
T ss_pred CCeEEEECCCCChHHHHHHHHhC
Confidence 34599999999999999999853
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.37 E-value=0.00037 Score=67.86 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++...|+++|..|+||||++..|..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998854
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.36 E-value=0.00027 Score=68.07 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCeEEEEEeCCCCcChHHHHH----Hhhh--hcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNMI----SGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~----~~~~--~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 194 (476)
.++.+.|+||||........+ ..+. .+|..++|+|+..+. ....+.......+++. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--------~~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--------EDMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--------HHHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--------HHHHHHHHHHhcCCCC--EEEEeCCC
Confidence 567899999999765433222 2222 367889999998752 1112222222223443 35679999
Q ss_pred C
Q 011836 195 D 195 (476)
Q Consensus 195 ~ 195 (476)
.
T Consensus 251 ~ 251 (296)
T 2px0_A 251 E 251 (296)
T ss_dssp T
T ss_pred c
Confidence 7
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.00056 Score=69.00 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcCh----HHHHH--HhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~~--~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.||||||.... ...+. ..+..+|.++||+|+..+ ......+.... ..++. -|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---------q~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---------HHHHHHHHHHHhcCCce--EEEEeCc
Confidence 4678999999996543 22221 122369999999999764 12333332222 34443 4689999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 96
No 244
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.25 E-value=0.00084 Score=69.20 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHhhCCCCCCCCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCC---ceEEEEEEEECCeeeeeeCCCCe
Q 011836 260 ALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGEN 334 (476)
Q Consensus 260 ~l~~l~~~~~~~~~~~~~~i~~~~~--~~G~v~~G~v~sG~l~~g~~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~ 334 (476)
.+..+..|.....-.-...|..+|+ ..|.++.++|..|.++.|..+.+...+ ...+|.||+++++++.++..|+-
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~e 473 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGME 473 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCC
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCE
Confidence 3443444444333344566778884 459999999999999999999998776 46799999999999999999999
Q ss_pred EEEEeccCCccccceeeEEecCC
Q 011836 335 LRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 335 v~i~l~~~~~~~i~~G~vl~~~~ 357 (476)
|++.+.+. .+++.||+|-...
T Consensus 474 cgi~~~~~--~~~~~gd~~~~~~ 494 (501)
T 1zo1_I 474 CGIGVKNY--NDVRTGDVIEVFE 494 (501)
T ss_dssp EEEEBCCC--TTCCTTCEEEECC
T ss_pred EEEEEcCc--CCCCCCCEEEEEE
Confidence 99999976 4799999987543
No 245
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.13 E-value=0.0021 Score=57.74 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=45.2
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-----CceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~-----ip~~ivviNK~D~ 195 (476)
.+.+.|||||+... ..+...+..+|.+++++.+.... ..+...+..+...+ ++ +.+++|+.|.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 57899999999763 34556778899999999887542 13445555555443 45 6889999995
No 246
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.01 E-value=0.0036 Score=63.47 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=24.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
..++..-|+|+|.+++|||||+|+|+..
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4667889999999999999999999854
No 247
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.81 E-value=0.0024 Score=66.37 Aligned_cols=179 Identities=12% Similarity=0.109 Sum_probs=120.5
Q ss_pred EEeCCCCcChHHHHHHhhhh-cCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEe-eccCCCCCchHHH
Q 011836 127 ILDAPGHKSYVPNMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 204 (476)
Q Consensus 127 liDtPGh~~~~~~~~~~~~~-~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~ 204 (476)
=-|+-|...-+...+..+.. -++-+=|+.+.-| +-|...+.++...+- +|+..| |.|
T Consensus 345 k~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG---------~i~~~Dv~~a~~~~a--~i~~fnv~~~---------- 403 (537)
T 3izy_P 345 KGDVDGSVEAILNVMDTYDASHECELDLVHFGVG---------DISENDVNLAETFHG--VIYGFNVNAG---------- 403 (537)
T ss_dssp EBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBS---------CBCHHHHHHHHHHSC--CEEESSCCBC----------
T ss_pred EeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCC---------CCCHHHHHHHHhcCC--eEEEecCCCC----------
Confidence 34777766556666665544 3455566666655 567888888887764 456666 222
Q ss_pred HHHHHHHHHHHHHhcCCCccCCeeEEEeecccCccccccccCCCCCCCChhhHHHHHhhCCCCCCCCCCCceEEEEEEEc
Q 011836 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 284 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~g~~~~~~~~iipiSa~~g~~i~~~~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~ 284 (476)
...+....+.|. .+..-+ =+.++.+ .+.+.+..+..|.....-.-+..|..+|+
T Consensus 404 -----~~~~~~a~~~~v------~i~~~~-----iiy~l~~----------~~~~~~~~~l~~~~~e~~~g~a~v~~~f~ 457 (537)
T 3izy_P 404 -----NVIQQLAAKKGV------KIKLHK-----IIYRLIE----------DLQEELSSRLPCIVEEHPIGEASILATFS 457 (537)
T ss_dssp -----HHHHHHHHHHTC------CCBCSC-----SSCCSHH----------HHHHHHSSSSSCSSSCCCSSEEEEEEEES
T ss_pred -----HHHHHHHHHcCC------eEEEeC-----hHHHHHH----------HHHHHHHhccCCceEEEEEEEEEEcCcEE
Confidence 112223333332 222211 1222222 14455665555555555556888899884
Q ss_pred c-----CCeEEEEEEEeeeecCCCEEEEecCCc---eEEEEEEEECCeeeeeeCCCCeEEEEecc-CCccccceeeEEe
Q 011836 285 D-----MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLS 354 (476)
Q Consensus 285 ~-----~G~v~~G~v~sG~l~~g~~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~i~l~~-~~~~~i~~G~vl~ 354 (476)
- .|.++.++|..|.|+.|..+.+...+. ..++.||.++.+++.++..|.-|++.+.+ . .|++.||+|-
T Consensus 458 ~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 458 ITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp SCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred ECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 1 578999999999999999999998774 56888999999999999999999999997 5 4799999984
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.81 E-value=0.0039 Score=59.85 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCcCh----HHHHHHh--hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEeec
Q 011836 121 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~----~~~~~~~--~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 193 (476)
.++.+.|+||||.... +..+... ...+|.+++|+|+..+ ....+.+.... ..++. -+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---------~~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------HHHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---------HHHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999985433 2222111 1258999999998754 12333333222 34443 3689999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 96
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.0041 Score=59.89 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+.-.++++|+.|||||||++.|..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456889999999999999999864
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.70 E-value=0.0032 Score=61.97 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=51.5
Q ss_pred hhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCc
Q 011836 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 223 (476)
+..+|.+++| +|..+.+ . .....+.+..+...++| .++|+||+|+. + .+.. +..+.....+...|+
T Consensus 128 ~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL~--~--~~~~-~~~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDLL--D--DEGM-DFVNEQMDIYRNIGY-- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGGC--C--HHHH-HHHHHHHHHHHTTTC--
T ss_pred HhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccCC--C--chhH-HHHHHHHHHHHhCCC--
Confidence 5789999876 5554432 1 01223344445567898 68999999993 3 1111 112333344566665
Q ss_pred cCCeeEEEeecccCccccccc
Q 011836 224 KKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 224 ~~~~~iipiSa~~g~~i~~~~ 244 (476)
+++++|+.+|.|+..+.
T Consensus 194 ----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 ----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CEEECBTTTTBTHHHHH
T ss_pred ----cEEEEecCCCcCHHHHH
Confidence 58999999999987753
No 251
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.69 E-value=0.0081 Score=63.35 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCceEEEE--EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCceEEEEEEEECCeeeeeeCCCCeEEEEeccCC-ccccc
Q 011836 273 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDIL 348 (476)
Q Consensus 273 ~~~~~~i~--~~~~-~~G~v~~G~v~sG~l~~g~~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~ 348 (476)
.|..+.|. .+|+ ..|.++.++|..|.|+.|..+.+..+....+|.||+++++++.++..|+-|++.+.+.. ..+++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~~ 541 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIH 541 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTBC
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEecCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCCC
Confidence 34555554 5773 45899999999999999999998333367799999999999999999999999998743 26799
Q ss_pred eeeEEecC
Q 011836 349 SGFVLSSV 356 (476)
Q Consensus 349 ~G~vl~~~ 356 (476)
.||+|-..
T Consensus 542 ~~d~~~~~ 549 (594)
T 1g7s_A 542 EGDTLYVD 549 (594)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998754
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.61 E-value=0.004 Score=61.39 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+.-.++++|+.|||||||++.|..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3456899999999999999998864
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.59 E-value=0.013 Score=53.04 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCeEEEEEeCCCC-cChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~ 195 (476)
..+.+.|||||+. ... .+...+..+|.+|+++.+..... ..+...+..+... +.+ +.+++|+.|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4578999999997 443 33456778999999998876432 2455556666664 566 7889999996
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.64 E-value=0.0039 Score=60.06 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 488999999999999999984
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.52 E-value=0.031 Score=53.57 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 195 (476)
..+.+.|||||+..... .+...+..+|.+|+|+.+..... ..+...+..+.. .+++.+-+|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999864422 22345688999999998765322 234444555554 345523389999995
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.32 E-value=0.013 Score=51.02 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
++...|+++|.+|||||||...|....|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 34468999999999999999998655554
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.08 E-value=0.012 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
+++++|+.|||||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986543
No 258
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.05 E-value=0.16 Score=51.18 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++...|+|+|..++|||+|+|.|+.
T Consensus 63 ~~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCchhHHHHHHHH
Confidence 467888999999999999999998864
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.96 E-value=0.013 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
..++++|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999753
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.94 E-value=0.01 Score=53.20 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
...++++|+.|||||||++.|+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999998653
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.72 E-value=0.019 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.++...|+|+|++|||||||++.|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999988643
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.59 E-value=0.022 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+...|+++|+.|||||||++.|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998754
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.52 E-value=0.023 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~ 72 (476)
...|+++|.+|||||||+..|....|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 4679999999999999999997665643
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.49 E-value=0.02 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++++|++|||||||++.|..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999854
No 265
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.43 E-value=0.043 Score=50.47 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
..+.+.|||||+.... .+...+..+|.+|+++.+..... ..+......+..++++.+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4678999999986544 33455688999999998875432 244555566777888778899999994
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.40 E-value=0.019 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++++|+.|||||||++.|+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999964
No 267
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.39 E-value=0.021 Score=49.51 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+|||||||...|....|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999998765553
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.38 E-value=0.022 Score=50.86 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
..++++|+.|||||||++.|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999998654
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.36 E-value=0.023 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.+...|+++|+.|+|||||+++|+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34567899999999999999999754
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.28 E-value=0.021 Score=49.83 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=18.0
Q ss_pred eEEEEEecCCCChHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~L 65 (476)
-.++++|++|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999975
No 271
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.23 E-value=0.025 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
-.++++|+.|||||||++.|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998643
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.20 E-value=0.03 Score=48.27 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|+++|.+||||||+...|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999865544
No 273
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.20 E-value=0.065 Score=48.93 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.7
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|||+|+... ..+...+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++|+.|.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 47799999998655 345567789999999998775432 245566666777787767789999996
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.16 E-value=0.028 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 65554
No 275
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.15 E-value=0.086 Score=49.19 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+...+..+...+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999975533222233346899999998776532 245566666777788833389999884
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.027 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+...|+++|++|||||||++.|+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999754
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.10 E-value=0.034 Score=48.94 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998765553
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.09 E-value=0.028 Score=50.19 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+|||||||...|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999765553
No 279
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.05 E-value=0.017 Score=59.11 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.....|+++|.+||||||+..+|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999853
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.04 E-value=0.026 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
-..++++|+.|||||||++.|...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998653
No 281
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.00 E-value=0.027 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...|+++|++|||||||++.|..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998854
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.98 E-value=0.034 Score=49.58 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.+..+|+++|.+||||||+...|....|.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34468999999999999999999765553
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.98 E-value=0.041 Score=48.19 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999998755553
No 284
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.96 E-value=0.078 Score=49.32 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=48.3
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++|+.|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 57899999998655 445566789999999998765432 245556666666677767789999996
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.94 E-value=0.038 Score=51.07 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~~ 72 (476)
...|+++|.+|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999999999997555654
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.92 E-value=0.036 Score=48.61 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999765553
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.90 E-value=0.043 Score=48.31 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 467999999999999999998655553
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.80 E-value=0.03 Score=54.99 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 378999999999999999995
No 289
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.74 E-value=0.039 Score=49.99 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=23.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
++..+|+++|.+||||||+...|....|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999766554
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.69 E-value=0.037 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+-..++++|+.|||||||++.|+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999998754
No 291
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.67 E-value=0.039 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
++--.++++|+.|||||||+..|...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33457899999999999999998643
No 292
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.66 E-value=0.034 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++++|++|||||||+..|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999864
No 293
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.64 E-value=0.042 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+|+++|.+||||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999998876555
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.61 E-value=0.038 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999864
No 295
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.57 E-value=0.044 Score=50.66 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+...|+|+|+.|||||||++.|....|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3467999999999999999998765564
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.57 E-value=0.05 Score=48.62 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|++.|.+||||||+...|....+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999765443
No 297
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.57 E-value=0.054 Score=48.27 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
......|++.|.+||||||+...|....|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 344578999999999999999999766554
No 298
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.55 E-value=0.05 Score=48.46 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=25.1
Q ss_pred cccCCcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..........|+++|.+||||||+...|....|.
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344455578999999999999999998765553
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.55 E-value=0.044 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|.++|.+||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999965443
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.53 E-value=0.039 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...++++|..|||||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.53 E-value=0.047 Score=48.45 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.|++.|.+||||||+...|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999765553
No 302
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.52 E-value=0.047 Score=50.72 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+...|+|.|.+||||||+...|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4457899999999999999998876556
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.52 E-value=0.04 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...++++|..|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999963
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.51 E-value=0.048 Score=48.09 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+...|+++|.+||||||+...|....|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4468999999999999999998765553
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.48 E-value=0.046 Score=49.26 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766654
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.48 E-value=0.039 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.142 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 307
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.46 E-value=0.037 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999874
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.43 E-value=0.038 Score=48.48 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|++.|.+||||||+...|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999976444
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.42 E-value=0.034 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
...|+++|.+|||||||.++|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999996543
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.36 E-value=0.04 Score=52.86 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|+.|+|||||++.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999996
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.33 E-value=0.058 Score=49.89 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+..+|++.|.+||||||+...|....|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999765554
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.32 E-value=0.045 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 5799999999999999998854 443
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.31 E-value=0.049 Score=48.34 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
++...|+|+|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999988654
No 314
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.30 E-value=0.042 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+|+|+|.+||||||+.+.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 4799999999999999999865 44
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.28 E-value=0.044 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+...|+++|..|||||||+..|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.27 E-value=0.032 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=16.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+...++++|+.|||||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999986
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.057 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
++...|+|+|.+|||||||...|..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 318
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.23 E-value=0.055 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++...|+++|.+||||||+...|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999998853
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.20 E-value=0.073 Score=46.64 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|++.|.+||||||+...|....|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999998765553
No 320
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.19 E-value=0.05 Score=49.03 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|+++|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765554
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.17 E-value=0.045 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998853
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.15 E-value=0.052 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|++.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999975444
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.14 E-value=0.062 Score=47.25 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+..+|+++|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999988655
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.13 E-value=0.048 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.+--.++|+|++|||||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34467999999999999999998643
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.07 E-value=0.053 Score=48.38 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+...|+++|.+|||||||...|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 326
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.07 E-value=0.053 Score=48.08 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 011836 48 VVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
|+|+|+.|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.07 E-value=0.052 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+.-.++++|+.|||||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998853
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.05 E-value=0.051 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.++...|+|+|+.|||||||++.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999988653
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.05 E-value=0.055 Score=52.36 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
.+....|+|+|++|||||||+..|....
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556789999999999999999886543
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.05 E-value=0.057 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+...|++.|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998643
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.05 E-value=0.054 Score=47.89 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999766553
No 332
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.04 E-value=0.05 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 333
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.03 E-value=0.14 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.254 Sum_probs=21.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
......|+++|.+||||||+..+|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999999853
No 334
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.01 E-value=0.048 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 335
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.92 E-value=0.05 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999883
No 336
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.91 E-value=0.054 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++++|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 579999999999999998864
No 337
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.90 E-value=0.046 Score=47.67 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=17.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...|++.|.+||||||+...|....|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999865444
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.90 E-value=0.051 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.272 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 339
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.88 E-value=0.051 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999884
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.86 E-value=0.03 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++|+|..|||||||+..|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 341
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.85 E-value=0.061 Score=51.29 Aligned_cols=26 Identities=42% Similarity=0.386 Sum_probs=22.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.++...|+|+|.+|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998854
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.84 E-value=0.058 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..+|+++|.+||||||+...|....|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999865544
No 343
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.82 E-value=0.052 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.246 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999884
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.81 E-value=0.063 Score=48.87 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 367999999999999999999765553
No 345
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.78 E-value=0.064 Score=49.90 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+...|+|+|+.|||||||+..|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999998755564
No 346
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.78 E-value=0.053 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999884
No 347
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.74 E-value=0.092 Score=47.72 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
++...|.++|+|||||+|+...|....|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 44567789999999999999999776664
No 348
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.74 E-value=0.055 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 349
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.73 E-value=0.054 Score=50.80 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 350
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.71 E-value=0.052 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.197 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999883
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.69 E-value=0.06 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+...|++.|.+||||||+...|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998643
No 352
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.69 E-value=0.056 Score=49.96 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999884
No 353
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.68 E-value=0.059 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998853
No 354
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.61 E-value=0.06 Score=47.83 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
...|++.|.+||||||+...|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999986543
No 355
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.60 E-value=0.058 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999884
No 356
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.59 E-value=0.057 Score=51.74 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999984
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.59 E-value=0.065 Score=46.51 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|+++|.+||||||+...|....|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999998765553
No 358
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.57 E-value=0.062 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3478999999999999999886
No 359
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.57 E-value=0.059 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.254 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 468999999999999999873
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.53 E-value=0.08 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765553
No 361
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.52 E-value=0.23 Score=47.14 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|||||....... ....+..+|.+|+|+.+..... ....+.+..+...+.+.+=+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 46699999999765432 2334567999999999886542 356667777888888767789999996
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.48 E-value=0.084 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
+|++.|.+||||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999876555
No 363
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.47 E-value=0.062 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999884
No 364
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.44 E-value=0.063 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.222 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999884
No 365
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.42 E-value=0.089 Score=47.57 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 468999999999999999998765553
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.37 E-value=0.095 Score=50.35 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
.+...|+|+|..|||||||++.|....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999887643
No 367
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.34 E-value=0.069 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998853
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.31 E-value=0.089 Score=45.25 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.-+|++.|.+||||||+...|....|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999988655553
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.31 E-value=0.073 Score=48.17 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
--.++++|++|||||||+..|..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998853
No 370
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.28 E-value=0.067 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++|+|+.|||||||++.|.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.26 E-value=0.068 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999874
No 372
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.21 E-value=0.069 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.20 E-value=0.11 Score=46.28 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..+..|+++|.+||||||+...|....|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45789999999999999999988655454
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.19 E-value=0.09 Score=48.09 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
....+|+++|.+||||||+...|....|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34468999999999999999999766553
No 375
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.15 E-value=0.089 Score=50.00 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
+....|+++|.+|||||||..+|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997654
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.15 E-value=0.077 Score=49.34 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+....|+++|.+||||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457899999999999999999865543
No 377
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.14 E-value=0.07 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999883
No 378
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.12 E-value=0.072 Score=46.46 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.11 E-value=0.08 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...|....|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999766664
No 380
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.11 E-value=0.084 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+...++|+|..|||||||++.|+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 456789999999999999999974
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.08 E-value=0.093 Score=45.75 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..+|+|+.|||||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 567999999999999999976544
No 382
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.94 E-value=0.51 Score=43.62 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=42.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeecc
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D 194 (476)
..+.+.|||||+..... ....+..+|.+|+++.+..... ..+...+..+.. .+++.+-+++|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56789999999976543 3456678999999999876432 122333333332 14552238999998
Q ss_pred C
Q 011836 195 D 195 (476)
Q Consensus 195 ~ 195 (476)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 6
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.89 E-value=0.092 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...|+|.|.+||||||+...|.. .|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC
Confidence 46899999999999999998854 44
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.84 E-value=0.093 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+...|+++|.+||||||+...|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998853
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.84 E-value=0.084 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 386
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.81 E-value=0.089 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999864
No 387
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.81 E-value=0.09 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+...++++|++|+|||||+..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998853
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.78 E-value=0.11 Score=46.77 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
+|.++|+|||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999876664
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.77 E-value=0.073 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
.-+++++|+.|||||||++.|+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999985
No 390
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.77 E-value=0.33 Score=45.57 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|||||+...... ....+..+|.+|+|+.+..... ....+.+..+...+++.+=+|+|++|.
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 46799999999655432 2233467899999999876542 355666667777788744489999996
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.69 E-value=0.11 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986543
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.63 E-value=0.11 Score=47.71 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
....|+|.|++||||||+...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999998765554
No 393
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.62 E-value=0.12 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|+|+|.+|||||||..+|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999965544
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.60 E-value=0.11 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.|++.|.+||||||+...|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999875555
No 395
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.59 E-value=0.09 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999884
No 396
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.52 E-value=0.096 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999873
No 397
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.49 E-value=0.12 Score=47.32 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
...+...|+++|.+||||||+...|....|.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3445568999999999999999998765663
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.47 E-value=0.048 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.|+|.|.+|||||||+..|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.45 E-value=0.12 Score=45.19 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.+|+++|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999998665553
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.45 E-value=0.12 Score=44.56 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..|++.|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999998765553
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.45 E-value=0.1 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...|+++|.+||||||+...|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 402
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.39 E-value=0.06 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++|+|+.|||||||++.|+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHH
Confidence 3478999999999999999874
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.19 E-value=0.13 Score=48.77 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.....|+|.|.+||||||+...|. ..|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 345789999999999999999886 4453
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.16 E-value=0.079 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
.-+++++|+.|||||||++.|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999884
No 405
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.09 E-value=0.1 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.129 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 468999999999999999884
No 406
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.06 E-value=0.093 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
..+++|+|+.|||||||++.|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999986543
No 407
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.05 E-value=0.12 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+.-.++++|++|||||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999863
No 408
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.03 E-value=0.18 Score=46.09 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=47.4
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D~ 195 (476)
.+.+.|||||+.... .....+..+|.+|+++.+..... ..+...+..+...+ .+.+-+++|+.|.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 477999999996543 34456788999999998875432 34566666777666 4457789999996
No 409
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.01 E-value=0.097 Score=47.82 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
++...|++.|..|||||||++.|....|
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 4557899999999999999998865433
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.90 E-value=0.12 Score=47.97 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999998765554
No 411
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.86 E-value=0.63 Score=43.96 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~ 195 (476)
.+.+.|||||+..... ...++..+|.+|+++.+..... ..+...+..+.. .+++.+-+++|+.|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 4779999999976553 2345567999999998876532 233333333333 256534589999996
No 412
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.85 E-value=0.49 Score=45.09 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=48.7
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
.+.+.|||||+....... ...+..+|.+|+|+.+..... ....+.+..+...+++.+-+|+|++|.
T Consensus 213 ~yD~VIIDtpp~~~~~d~-~~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCTHH-HHHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhHHH-HHHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 467999999997654322 233468999999999877643 467777777888887745578999996
No 413
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.82 E-value=0.61 Score=43.27 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D~ 195 (476)
..+.+.|||||+.... .....+..+|.+|+++.+..... ......+..+..++ .+ +.+++|+.+.
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 3577999999996543 34556678999999999876432 23444555666664 44 6789999964
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.72 E-value=0.12 Score=50.83 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHHHH-cCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEee
Q 011836 172 REHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 233 (476)
Q Consensus 172 ~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiS 233 (476)
+.-+.++++ ..-|++++ +|.|..+.+....+++.+.+....++.|. .++.++
T Consensus 144 ~QRValArAL~~~P~lLL----LDEPts~LD~~~r~~l~~~l~~~~~~~g~------tvi~vT 196 (359)
T 3fvq_A 144 QQRAALARALAPDPELIL----LDEPFSALDEQLRRQIREDMIAALRANGK------SAVFVS 196 (359)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHTTC------EEEEEC
T ss_pred HHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhCCC------EEEEEe
Confidence 333344444 34566655 79887777777777777777777776553 455554
No 415
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.65 E-value=0.13 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.155 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
+.-.++|+|+.|||||||++.|+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999998643
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.60 E-value=0.096 Score=54.07 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
.+++++|++|||||||+++|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999984
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.53 E-value=0.21 Score=45.68 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
+...|++.|.+||||||++..|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999975543
No 418
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.46 E-value=0.28 Score=45.22 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=44.8
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC--------ceEEEEEeec
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 193 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~i--------p~~ivviNK~ 193 (476)
.+.+.|||||+.... .+...+..+|.+|+++++..... ..+...+..+...+. ..+-+++|+.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 688999999986543 55666789999999998875432 234444444444431 3477899999
Q ss_pred cC
Q 011836 194 DD 195 (476)
Q Consensus 194 D~ 195 (476)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 85
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.38 E-value=0.15 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.++++|++|+|||||+.+|....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 399999999999999999965443
No 420
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.36 E-value=0.31 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+.+.|++|+|||||.-++.+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999998854
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.36 E-value=0.16 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...|+++|.+||||||+...|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998853
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.31 E-value=0.16 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
..+|+|+.|+|||||+.+|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999997643
No 423
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.20 E-value=0.14 Score=50.17 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred CchHHHHHHHHH-cCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 169 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
+|-.+. .++++ ..-|++++ +|.|..+.+....+++.+.+..+.++.|
T Consensus 149 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 149 GQQQRV-ALARALAPRPQVLL----FDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHH-HHHHHHTTCCSEEE----EESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 344443 44444 45566655 7988777777777777777777666554
No 424
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.16 E-value=0.14 Score=50.23 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred CchHHHHHHHHH-cCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 169 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
+|-.+. .++++ ..-|++++ +|.|..+.+....+++.+.+..+.++.|
T Consensus 137 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 137 GQQQRV-ALARALVKQPKVLL----FDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHHHH-HHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHcCCCEEE----EECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 344443 44444 35565654 7988777777777777777777666554
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.97 E-value=0.14 Score=50.67 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHHHHHc-CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcCCCccCCeeEEEee
Q 011836 175 VMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 233 (476)
Q Consensus 175 l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~iipiS 233 (476)
+.+++++ .-|++++ +|.|..+.+....+++.+.+..+.++.|. .++.+|
T Consensus 142 VaiArAL~~~P~lLL----LDEPts~LD~~~~~~l~~~l~~l~~~~g~------tii~vT 191 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFL----LDEPLSNLDAALRVQMRIEISRLHKRLGR------TMIYVT 191 (381)
T ss_dssp HHHHHHHHHCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHCC------EEEEEC
T ss_pred HHHHHHHHcCCCEEE----EECCCcCCCHHHHHHHHHHHHHHHHhCCC------EEEEEE
Confidence 3344433 3455654 79887777777777777777777666553 455554
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.93 E-value=0.15 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 468999999999999999884
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.86 E-value=0.21 Score=45.73 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g~ 71 (476)
.+.+++++|.+||||||+...|....|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999998765553
No 428
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.79 E-value=0.2 Score=45.21 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998863
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.79 E-value=0.16 Score=50.19 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=29.3
Q ss_pred CchHHHHHHHHH-cCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 169 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
+|-.+. .++++ ..-|++++ +|.|..+.+....+++.+.+..+.++.|
T Consensus 143 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 190 (372)
T 1g29_1 143 GQRQRV-ALGRAIVRKPQVFL----MDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (372)
T ss_dssp HHHHHH-HHHHHHHTCCSEEE----EECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHhcCCCEEE----ECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 344443 33333 35565655 7988777777777777777777666554
No 430
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.76 E-value=0.22 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.|+|.|.+||||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999876555
No 431
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.75 E-value=0.16 Score=50.13 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHcCCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 168 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 168 ~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
++|-.+.........-|++++ +|.|..+.+....+++.+.+..+.++.|
T Consensus 144 GGq~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLL----MDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEE----EcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 355555433333345566655 7988777777777777777777766554
No 432
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.45 E-value=0.12 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
+...|+|.|..||||||+.+.|....|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999875444
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.41 E-value=0.13 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.307 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.++...|++.|..||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999988544
No 434
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.25 E-value=0.22 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
.+.++|++|+|||||+.++....
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999986543
No 435
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.15 E-value=0.51 Score=44.48 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCCcChHHHHHHhhhhcCEEEEEEECCCC
Q 011836 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 122 ~~~~~liDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g 159 (476)
.+.+.|||||+.. ...+...+..+|.+|+++.+...
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~ 138 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFV 138 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCcc
Confidence 4679999999975 34556678899999999988653
No 436
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.10 E-value=0.21 Score=49.61 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 468999999999999999884
No 437
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.08 E-value=0.18 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+--.++|+|+.|||||||++.|+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999998864
No 438
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.96 E-value=1.2 Score=43.13 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
--.+.|.|.+++|||||+-+|..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999988864
No 439
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.81 E-value=0.22 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++|+|++|+|||||+..|..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4688999999999999988854
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.81 E-value=0.12 Score=50.42 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHHc-CCceEEEEEeeccCCCCCchHHHHHHHHHHHHHHHHhcC
Q 011836 173 EHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 173 e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~~~~~l~~~l~~~g 220 (476)
.-+.+++++ .-|++++ +|.|..+.+....+++.+.++.+.++.|
T Consensus 134 QRvalAraL~~~P~lLL----LDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 134 QRVALARALVTNPKILL----LDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHHHHHHHTTSCCSEEE----EESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 334455544 4565654 7988777777777777777777665544
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.64 E-value=0.22 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
-++|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999654
No 442
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.51 E-value=0.28 Score=48.47 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.+...++++|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34468899999999999999998643
No 443
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.49 E-value=0.26 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
--+++++|+.|+|||||++.|...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999988653
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.43 E-value=0.24 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 445
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.25 E-value=0.3 Score=42.09 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
...+.+.|.+|+|||||+.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998853
No 446
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.21 E-value=0.26 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 447
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.12 E-value=0.28 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
.+.++|++|+|||||+.+|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999986543
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.09 E-value=0.26 Score=44.30 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...|++.|.+||||||+...|....|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999998866555
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.02 E-value=0.28 Score=47.49 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...++++|++|+|||||+..+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35689999999999999999976543
No 450
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.83 E-value=0.35 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
...+.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998543
No 451
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.81 E-value=0.14 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999884
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.79 E-value=0.3 Score=44.36 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999999998853
No 453
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.63 E-value=0.29 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998864
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.39 E-value=0.39 Score=46.26 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|+|+|++++|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999865433
No 455
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.29 E-value=1.3 Score=43.22 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.2
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-..+.|.|++++|||||+.++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998885
No 456
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.29 E-value=1.1 Score=43.00 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
.+...|.+.|++|+|||+|+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 4457899999999999999999853
No 457
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.14 E-value=0.29 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999884
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.05 E-value=0.29 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999885
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.99 E-value=0.37 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
..|++.|..||||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999999987554
No 460
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.88 E-value=0.3 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999885
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.79 E-value=0.32 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..+|+|+.|+|||||+.+|.+..+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999976543
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.60 E-value=0.38 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
--+++|+|+.|+|||||++.|..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998864
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.50 E-value=0.46 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999875544
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.50 E-value=0.43 Score=42.12 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..+.+.|++|+|||||+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.44 E-value=0.33 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||++.|..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999998853
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.32 E-value=0.42 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=19.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
--.++|+|++|+|||||+..|+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34788999999999999988853
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.17 E-value=0.31 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+--.++++|+.|||||||++.|+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34579999999999999999874
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.15 E-value=0.3 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999884
No 469
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.12 E-value=0.44 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
....+.+.|++|+|||||+.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.02 E-value=0.48 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
...|+|+|++++|||||...|....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3568999999999999999996543
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.69 E-value=0.38 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
--.++++|+.|||||||++.|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 34789999999999999998853
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.58 E-value=0.38 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3478999999999999999884
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.54 E-value=0.41 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++|+|+.|||||||+..|.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999884
No 474
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.49 E-value=0.96 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..+.|.|.+++|||||.-++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 3677899999999999988753
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.48 E-value=0.6 Score=44.65 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
...|+|+|++++|||||...|....+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35688999999999999999965443
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.40 E-value=0.53 Score=41.96 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
..|+|+|++++|||||.-.|.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999998885
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.39 E-value=0.27 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.3
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|+
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHh
Confidence 3478999999999999999874
No 478
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.38 E-value=1.1 Score=45.18 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHHHHH
Q 011836 41 NNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 41 ~~~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.-.+..-|.+.|+||+|||+|+.++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456788999999999999999999543
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.36 E-value=0.4 Score=49.74 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll 66 (476)
.++++|+.|||||||++.|.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999884
No 480
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.35 E-value=0.4 Score=41.19 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
..++.+.|.+|+|||||+.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.25 E-value=0.5 Score=41.16 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
.-|.+.|++|+|||||.-.|+
T Consensus 17 ~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999998886
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.18 E-value=0.53 Score=45.94 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
...+|+++|.+|+|||||...|...
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999888543
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.05 E-value=0.5 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
++..-|++.|.+||||||++..|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999854
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.86 E-value=0.54 Score=42.41 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
++..-|++.|..||||||++..|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999999854
No 485
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.77 E-value=0.6 Score=42.41 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011836 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll 66 (476)
-.++++|++|+|||||+.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999987775
No 486
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.72 E-value=0.42 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
..+|+|+.|||||||+.+|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 567999999999999999976554
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.72 E-value=0.47 Score=50.01 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011836 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll 66 (476)
.++++|+.|||||||+..|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999884
No 488
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.49 E-value=0.33 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=19.3
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011836 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999874
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.30 E-value=0.55 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 011836 46 LNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 46 ~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
..|+|+|++++|||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999986443
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.22 E-value=0.76 Score=43.52 Aligned_cols=29 Identities=24% Similarity=0.117 Sum_probs=23.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 42 ~~~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+..+.+.+.|++|+|||+|+.++....|
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456778889999999999999976554
No 491
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=84.18 E-value=0.95 Score=34.53 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=40.9
Q ss_pred EeeeecCCCEEE-EecCC--ceEEEEEEEE-CCeeeeee-CCCCeEEEEeccCCccccceeeEE
Q 011836 295 ESGSVREGDSLL-VMPNK--AQVKVLAIYC-DDNRVRHA-GPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 295 ~sG~l~~g~~v~-~~p~~--~~~~V~si~~-~~~~v~~a-~aG~~v~i~l~~~~~~~i~~G~vl 353 (476)
....+.+||.|. +.|.+ ...+|..|.. ..++++.| .+|+.|.|.+. ..+..|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 477899999997 55665 4567778874 47889998 99999998775 235556665
No 492
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.14 E-value=2.3 Score=37.99 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCcCh-----HHHHHHhhhhcCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccC
Q 011836 121 ETTRFTILDAPGHKSY-----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~~-----~~~~~~~~~~~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 195 (476)
..+.+.|||+||.... .....-+....+.+|+|+.+..+.. .++...+..+...+++-.=+++|+.|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~-------~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI-------NHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcH-------HHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 3578999999985431 1111111112234778887754322 345555566666677744478999996
No 493
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.89 E-value=0.69 Score=42.48 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.....+.+.|++|+|||+|+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999998643
No 494
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.80 E-value=1.9 Score=42.41 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll 66 (476)
+...|.+.|++|+|||+|+.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999884
No 495
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.78 E-value=0.56 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 011836 48 VVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 48 i~ivG~~~sGKSTLi~~Ll~~ 68 (476)
.+|+|+.|+|||||+.++.+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999998653
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.76 E-value=0.65 Score=44.13 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011836 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.+...|.+.|++|+|||||+.+|....+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456799999999999999999865443
No 497
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.75 E-value=0.65 Score=43.75 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~~~ 69 (476)
+...+.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45689999999999999999986433
No 498
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.72 E-value=0.25 Score=49.33 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011836 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~~sGKSTLi~~Ll~~~g 70 (476)
.++++|+.|||||||+++|....+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 778999999999999999866554
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.71 E-value=0.5 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.140 Sum_probs=18.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011836 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~~sGKSTLi~~Ll~ 67 (476)
+..-|++.|..||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999854
No 500
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=83.70 E-value=0.96 Score=41.06 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=26.2
Q ss_pred cCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEeeccCC
Q 011836 147 ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 147 ~D~~ilVvda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 196 (476)
.+.-+++||-..-.. ....+.+..+...+++ +|++.-.+|-.
T Consensus 88 ~~~dvViIDEaQ~l~-------~~~ve~l~~L~~~gi~-Vil~Gl~~df~ 129 (223)
T 2b8t_A 88 DETKVIGIDEVQFFD-------DRICEVANILAENGFV-VIISGLDKNFK 129 (223)
T ss_dssp TTCCEEEECSGGGSC-------THHHHHHHHHHHTTCE-EEEECCSBCTT
T ss_pred CCCCEEEEecCccCc-------HHHHHHHHHHHhCCCe-EEEEecccccc
Confidence 346688888665321 2344455555557887 77777777853
Done!