BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011837
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/427 (51%), Positives = 281/427 (65%), Gaps = 4/427 (0%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+
Sbjct: 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQ 74
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EER KGKTVEVGRA+FETE FTILDAPGHKS+VPNMI GASQAD+ VLVISAR
Sbjct: 75 EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 134
Query: 163 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYN 222
QTREH M MDD TVNWS ERY+E + K+ PFLK G+N
Sbjct: 135 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194
Query: 223 VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 282
KKD+ F+P SGL G N+K + D CPW+ G LD + R +GP R+PI+DK
Sbjct: 195 PKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDK 252
Query: 283 FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGI 342
+KDMGTVV+GK+ESGS+ +G L++MPNK V+VL I DD PGENL+IRL GI
Sbjct: 253 YKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGI 312
Query: 343 EEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVE 402
EEE+IL GF+L + + F Q+ I+E +I GY AVLHIH +EE EI
Sbjct: 313 EEEEILPGFILCDPSNLCHSGRTFDVQIVIIE--HKSIICPGYNAVLHIHTCIEEVEITA 370
Query: 403 LLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVA 462
L+ +D + + R++ +IC E F DF Q+GRFTLR EGKT+A
Sbjct: 371 LISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIA 430
Query: 463 VGKVTEL 469
+GKV +L
Sbjct: 431 IGKVLKL 437
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 280/429 (65%), Gaps = 6/429 (1%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+N+VFIGHVDAGKST GG ILFL+G VD RT++K E+EAK+ +ESWY+++ +D+
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EER KGKTVEVGRA+FETE RF++LDAPGHK YV NMI+GASQADIGVLVISAR
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 163 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFL-KASGY 221
QTREH + MD+ +V WS+ERY E K++ FL + +GY
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 222 NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 281
N K DV+++P+S G N+K RVD S+CPW+ GP L E LD + R N PF MPI
Sbjct: 221 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIAS 280
Query: 282 KFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLS 340
K+KD+GT++ GK+E+GS+++ ++LVMP ++V AIY + D + + G+ +R+R+
Sbjct: 281 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 340
Query: 341 GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 400
G ++ D+ +G+VL+S PV A T FIAQ+ ILEL +I T GY V+HIH VEE
Sbjct: 341 G-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSF 397
Query: 401 VELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKT 460
+LLH++D G ++ ++ +C E+F D+ +GRFTLR +G T
Sbjct: 398 AKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTT 456
Query: 461 VAVGKVTEL 469
VAVGKV ++
Sbjct: 457 VAVGKVVKI 465
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 236/431 (54%), Gaps = 7/431 (1%)
Query: 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT 100
+ K HLN++ IGHVD GKST G++L G +D++T+++ E+ AK +ES A+++D
Sbjct: 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR 61
Query: 101 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXX 160
+EER +G T+ + FET+ FTI+DAPGH+ +V NMI+GASQAD +LV+SA+
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 161 XXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASG 220
QTREH++ MD + ++RY EI +++ F+++ G
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 221 YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280
+N K V+F+P+ G N+ + + W+NGP L E LD++E+ P+ + P R+PI
Sbjct: 182 FNTNK-VRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQ 238
Query: 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIR 338
D + +GTV +G+VESG ++ GD ++ MP +V +I ++ A PG+N+
Sbjct: 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFN 298
Query: 339 LSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEEC 398
+ G+E++DI G V+ P EF A +I+ + GY VLH+H C
Sbjct: 299 VRGVEKKDIKRGDVVGHPNNPPTVADEFTA--RIIVVWHPTALANGYTPVLHVHTASVAC 356
Query: 399 EIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEG 458
+ EL+ ++D G + + + + +C EK+ +F LGRF +R G
Sbjct: 357 RVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMG 416
Query: 459 KTVAVGKVTEL 469
KTV VG + ++
Sbjct: 417 KTVGVGIIVDV 427
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 235/429 (54%), Gaps = 7/429 (1%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+N+V IGHVD GKST G +L+ G ++++ +++ E++AK + +ES+ A+I+D +
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EER +G T+++ FET+ FTI+DAPGH+ +V NMI+GASQAD +LV+SAR
Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 163 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYN 222
QTREH++ MD VN+ ++RY+ + S + F+K GY
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 183
Query: 223 VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 282
V K + F+P+S G N+ R PW+NGP L EALD+++ + + P R+P+ +
Sbjct: 184 VDK-IPFIPVSAWKGDNLIERSPN--MPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNV 240
Query: 283 FK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLS 340
+ GTV +G+VE+G +R GD ++ MP +V +I +++ A PG+N+ +
Sbjct: 241 YSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVR 300
Query: 341 GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 400
G+ + DI G V + KP EF A +I + + T GY V+H+H I
Sbjct: 301 GVSKSDIKRGDVAGHLDKPPTVAEEFEA--RIFVIWHPSAITVGYTPVIHVHTASVSSRI 358
Query: 401 VELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKT 460
+E+ ++D G + R + + EKF++ QLGRF +R +T
Sbjct: 359 IEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRT 418
Query: 461 VAVGKVTEL 469
V +G VT++
Sbjct: 419 VGIGIVTDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 235/429 (54%), Gaps = 7/429 (1%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+N+V IGHVD GKST G +L+ G ++++ +++ E++AK + +ES+ A+I+D +
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EER +G T+++ FET+ FTI+DAPGH+ +V NMI+GASQAD +LV+SAR
Sbjct: 67 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 163 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYN 222
QTREH++ MD VN+ ++RY+ + S + F+K GY
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 186
Query: 223 VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 282
V K + F+P+S G N+ R PW+NGP L EALD+++ + + P R+P+ +
Sbjct: 187 VDK-IPFIPVSAWKGDNLIERSPN--MPWYNGPTLVEALDQLQPPAKPVDKPLRIPVQNV 243
Query: 283 FK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLS 340
+ GTV +G+VE+G +R GD ++ MP +V +I +++ A PG+N+ +
Sbjct: 244 YSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVR 303
Query: 341 GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEI 400
G+ + DI G V + KP EF + +I + + T GY V+H+H I
Sbjct: 304 GVSKSDIKRGDVAGHLDKPPTVAEEF--EARIFVIWHPSAITVGYTPVIHVHTASVSSRI 361
Query: 401 VELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKT 460
+E+ ++D G + R + + EKF++ QLGRF +R +T
Sbjct: 362 IEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRT 421
Query: 461 VAVGKVTEL 469
V +G VT++
Sbjct: 422 VGIGIVTDV 430
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 216/440 (49%), Gaps = 22/440 (5%)
Query: 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMD 99
G K H+NVV IGHVD+GKSTT G +++ G +D RTI+K+EKEA + + S+ A+++D
Sbjct: 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLD 61
Query: 100 TNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXX 159
+ ER +G T+++ FET + T++DAPGH+ ++ NMI+G SQAD +L+I+
Sbjct: 62 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121
Query: 160 XXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKAS 219
QTREH + MD +V W + R+ EI + + F+K
Sbjct: 122 EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD--SVKWDESRFQEIVKETSNFIKKV 179
Query: 220 GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW------------NGPCLFEALDRIEIT 267
GYN K V F+PISG G NM + PW+ G L EA+D IE
Sbjct: 180 GYN-PKTVPFVPISGWNGDNMIEATTNA--PWYKGWEKETKAGVVKGKTLLEAIDAIEQP 236
Query: 268 PRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNR 325
R + P R+P+ D +K +GTV +G+VE+G ++ G + P +V ++ +
Sbjct: 237 SRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQ 296
Query: 326 VRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAG 384
+ PG+N+ + + ++I G V P F A + +L +AG
Sbjct: 297 LEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLN--HPGQISAG 354
Query: 385 YKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFA 444
Y VL H C ELL + D +G + + + +C E F+
Sbjct: 355 YSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFS 414
Query: 445 DFAQLGRFTLRTEGKTVAVG 464
++ LGRF +R +TVAVG
Sbjct: 415 EYPPLGRFAVRDMRQTVAVG 434
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 36/444 (8%)
Query: 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIM 98
+ N K +++V GHVD+GKST G+I+F G+++ R++QK EA + + S+ A+++
Sbjct: 171 QSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLL 230
Query: 99 DTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARX 158
DT EEER +G T++V FE++ + I DAPGH+ ++ MI+GAS AD VLV+ +
Sbjct: 231 DTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290
Query: 159 XXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFL-K 217
QTREH +D ++WS++R+ EI++ ++ FL K
Sbjct: 291 NNFERGFLENGQTREHAYLLRALGISEIVVSVNKLD--LMSWSEDRFQEIKNIVSDFLIK 348
Query: 218 ASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDP-NGPFR 276
G+ +V F+PIS + G N+ + L W+ GP L ALD++ + P P P R
Sbjct: 349 MVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL-VPPEKPYRKPLR 406
Query: 277 MPIIDKFKDMGTV-VMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGP---- 331
+ I D ++ +V V G+VE+G+V+ L + ++ V N +R++ P
Sbjct: 407 LSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYV------KNVIRNSDPSSTW 460
Query: 332 ---GENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAV 388
G+ + ++L+ IE + G +LS+ PV V F+A++Q ++ + +G V
Sbjct: 461 AVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFDI--HGPILSGSTLV 518
Query: 389 LHIHAVVEEC--EIVELLHQIDXXXXXXXXXXXXXX-XNGAIVVCRIQVNNSICTEKFAD 445
LH+ V +IV + ++ +G +C + +
Sbjct: 519 LHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAE-----------E 567
Query: 446 FAQLGRFTLRTEGKTVAVGKVTEL 469
LGRF LR G TVA G V EL
Sbjct: 568 CPALGRFILRRSGDTVAAGIVKEL 591
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/448 (28%), Positives = 214/448 (47%), Gaps = 28/448 (6%)
Query: 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE 104
HL+ V +GHVDAGKST G++L+ V+ ++K ++E++ + S+ A+IMD EE
Sbjct: 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 92
Query: 105 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXX 164
R +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD+ +L +
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 165 XXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 224
QT+EH++ MD+ V+WS++R++EI+SK+ P+L G+ +
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGF-FE 209
Query: 225 KDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN------GPFRM 277
++ ++PISG G + K + W+NGP L L+ N PF
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269
Query: 278 PIIDKFKDMGT-----VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRH---- 328
+++ T +V GK+ESGS++ G+SL + P++ V I + +
Sbjct: 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHE 329
Query: 329 ----AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQILELLDNAIFTA 383
A G+ + ++L EDI +G + +SV + + F+ +L ++ N
Sbjct: 330 ETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--NRPLLP 387
Query: 384 GYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVCRIQVNNSICTE 441
G +L I + I L+ ID + + I+V I
Sbjct: 388 GTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 447
Query: 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469
+ +LGR LR +G+T+A GK++E+
Sbjct: 448 TAHENDRLGRVVLRKDGRTIAAGKISEI 475
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 214/448 (47%), Gaps = 28/448 (6%)
Query: 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE 104
HL+ V +GHVDAGKST G++L+ V+ ++K ++E++ + S+ A+IMD EE
Sbjct: 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 226
Query: 105 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXX 164
R +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD+ +L +
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 165 XXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 224
QT+EH++ MD+ V+WS++R++EI+SK+ P+L G+ +
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWSQQRFEEIKSKLLPYLVDIGF-FE 343
Query: 225 KDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN------GPFRM 277
++ ++PISG G + K + W+NGP L L+ N PF
Sbjct: 344 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 403
Query: 278 PIIDKFKDMGT-----VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNR---VRH- 328
+++ T +V GK+ESGS++ G+SL + P++ V I + H
Sbjct: 404 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHE 463
Query: 329 ----AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQILELLDNAIFTA 383
A G+ + ++L EDI +G + +SV + + F+ +L ++ N
Sbjct: 464 ETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--NRPLLP 521
Query: 384 GYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVCRIQVNNSICTE 441
G +L I + I L+ ID + + I+V I
Sbjct: 522 GTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 581
Query: 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469
+ +LGR LR +G+T+A GK++E+
Sbjct: 582 TAHENDRLGRVVLRKDGRTIAAGKISEI 609
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 274 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGE 333
P R+PI+DK+KDMGTVV+GK+ESGS+ +G L++MPNK V+VL I DD PGE
Sbjct: 6 PIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGE 65
Query: 334 NLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHA 393
NL+IRL GIEEE+IL GF+L + F AQ+ I+E +I GY AVLHIH
Sbjct: 66 NLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE--HKSIICPGYNAVLHIHT 123
Query: 394 VVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLGRFT 453
+EE EI L+ +D + + R++ +IC E F DF Q+GRFT
Sbjct: 124 CIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFT 183
Query: 454 LRTEGKTVAVGKVTEL 469
LR EGKT+A+GKV +L
Sbjct: 184 LRDEGKTIAIGKVLKL 199
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/448 (28%), Positives = 210/448 (46%), Gaps = 28/448 (6%)
Query: 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE 104
HL+ V +GHVDAGKST G++L+ V+ ++K ++E++ + S+ A+I D EE
Sbjct: 33 HLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEE 92
Query: 105 RIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXX 164
R +G TV + +HF T FTI+DAPGH+ +VPN I G SQAD +L +
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESG 152
Query: 165 XXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 224
QT+EH + D+ V+WS++R++EI+SK+ P+L G+ +
Sbjct: 153 FDLDGQTKEHXLLASSLGIHNLIIAXNKXDN--VDWSQQRFEEIKSKLLPYLVDIGF-FE 209
Query: 225 KDVQFLPISGLMGLNM-KTRVDKSLCPWWNGPCLFEALDRIEITPRDPN------GPFRM 277
++ ++PISG G + K + W+NGP L L+ N PF
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLF 269
Query: 278 PIIDKFKDMGT-----VVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRH---- 328
+++ T +V GK+ESGS++ G+SL + P++ V I + +
Sbjct: 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHE 329
Query: 329 ----AGPGENLRIRLSGIEEEDILSGFVLSSV-AKPVAAVTEFIAQLQILELLDNAIFTA 383
A G+ + ++L EDI +G + +SV + + F+ +L + N
Sbjct: 330 ETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDX--NRPLLP 387
Query: 384 GYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXX--XXXNGAIVVCRIQVNNSICTE 441
G +L I + I L+ ID + + I+V I
Sbjct: 388 GTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLL 447
Query: 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469
+ +LGR LR +G+T+A GK++E+
Sbjct: 448 TAHENDRLGRVVLRKDGRTIAAGKISEI 475
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 5/199 (2%)
Query: 272 NGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAG 330
+ PF MPI K+KD+GT++ GK+E+GS+++ ++LVMP ++V AIY + D + +
Sbjct: 5 SAPFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSI 64
Query: 331 PGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLH 390
G+ +R+R+ G ++ D+ +G+VL+S PV A T FIAQ+ ILEL +I T GY V+H
Sbjct: 65 CGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--PSILTTGYSCVMH 121
Query: 391 IHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTEKFADFAQLG 450
IH VEE +LLH++D G ++ ++ +C E+F D+ +G
Sbjct: 122 IHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMG 180
Query: 451 RFTLRTEGKTVAVGKVTEL 469
RFTLR +G TVAVGKV ++
Sbjct: 181 RFTLRDQGTTVAVGKVVKI 199
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 121/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + F++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTFVTAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 22/317 (6%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDK--SRESWYMAYIMDT 100
K L + G+VD GKST G++L S + + ++ +++K + + +A ++D
Sbjct: 22 KEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDG 81
Query: 101 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXX 160
+ ER +G T++V +F T +F I D PGH+ Y N +GAS D+ ++++ AR
Sbjct: 82 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR--- 138
Query: 161 XXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLK-AS 219
QTR H D +N ER ES +LK A
Sbjct: 139 ----YGVQTQTRRHSYIASLLGIKHIVVAINKXD---LNGFDERV--FESIKADYLKFAE 189
Query: 220 GYNVKKDVQ-FLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278
G K F+P S L G N+ + ++S PW+ G L E L+ +EI R P
Sbjct: 190 GIAFKPTTXAFVPXSALKGDNVVNKSERS--PWYAGQSLXEILETVEIASDRNYTDLRFP 247
Query: 279 I--IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLR 336
+ +++ G + SG V +GD ++V+P+ +V +I + + AGPG+
Sbjct: 248 VQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQ--A 305
Query: 337 IRLSGIEEEDILSGFVL 353
+ L+ +E DI G +L
Sbjct: 306 VTLTXEDEIDISRGDLL 322
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVTAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVTAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 9 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 54
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 55 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 109
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 110 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 162
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 163 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 215
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 216 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 275
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 276 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 332
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 333 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 379
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 380 ALEEGL------RFAIREGGRTVGAGVVTKI 404
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 190/451 (42%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KTR VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V+L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVQLPPGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 189/451 (41%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + F++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTFVTAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KT+ VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + +L E +
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYVLKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F +GY+ + + +V L ++ G V +++ +
Sbjct: 332 TGFFSGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 188/451 (41%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KT+ VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + IL E +
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYILKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F GY+ + + +V L ++ G V +++ +
Sbjct: 332 TGFFTGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 188/451 (41%), Gaps = 78/451 (17%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T + +++ + E KD +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDKA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EER +G T+ +ET ++ +D PGH Y+ NMI+GA+Q D +LV+SA
Sbjct: 54 PEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSA----- 108
Query: 162 XXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGY 221
QTREH++ +D + E D +E ++ L Y
Sbjct: 109 --ADGPMPQTREHILLARQVGVPYIVVFMNKVD---MVDDPELLDLVEMEVRDLLNQ--Y 161
Query: 222 NVKKD-VQFLPISGLMGL-----NMKTR------VDKSLCPWWNGPCLFEALDRIEITP- 268
D V + S L+ L N KT+ VDK W L +A+D TP
Sbjct: 162 EFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDK----IWE---LLDAIDEYIPTPV 214
Query: 269 RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVM---PNKAQVKVLAIYCDD 323
RD + PF MP+ D F GTV G++E G V+ GD + ++ P + V +
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 324 NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDN 378
++ G+N+ + L G+ E++ G VL AKP + T+F A + IL E +
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQVL---AKPGSITPHTKFEASVYILKKEEGGRH 331
Query: 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSI 438
F GY+ + + +V L ++ G V +++ +
Sbjct: 332 TGFFTGYRPQFYFRT-TDVTGVVRLPQGVEMVMP------------GDNVTFTVELIKPV 378
Query: 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469
E+ RF +R G+TV G VT++
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 189/448 (42%), Gaps = 70/448 (15%)
Query: 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT 100
KRH+NV IGHVD GK+T + +++ ++R ++ + DK+RE
Sbjct: 7 RTKRHVNVGTIGHVDHGKTTLTAALTYVAA-AENRNVEVKDYGDIDKARE---------- 55
Query: 101 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXX 160
ER +G T+ +ET ++ +D GH Y+ NMI+GA+Q D +LV+SA
Sbjct: 56 ---ERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSA---- 108
Query: 161 XXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASG 220
QTREH++ +D + +E D +E ++ L
Sbjct: 109 ---ADGRMRQTREHILLARQVGVRYIVVFMNKVD---MVDDRELLDLVEMEVRDLLNQ-- 160
Query: 221 YNVKKD-VQFLPISGLMGL-----NMKTRVDKSLCPW----WNGPCLFEALDR-IEITPR 269
Y + D V+ + S L+ L N KT+ + W W L +A+D I R
Sbjct: 161 YEFRGDEVRVIRGSALLALEEMHKNRKTK--RGENEWVDKIWE---LLDAIDEYIRTRVR 215
Query: 270 DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVK---VLAIYCDDN 324
D + F M + D F GTV G++E G V+ GD + ++ + + V +
Sbjct: 216 DVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRK 275
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAI---F 381
++ G+N+ + L G+ E++ G VL+ + T+F A + IL+ + F
Sbjct: 276 TLQEGIAGDNVGLLLRGVSREEVERGQVLAKRG-SITRHTKFEASVYILKKEEGGRHTGF 334
Query: 382 TAGYKAVLHIHAVVEECEIVELLHQIDXXXXXXXXXXXXXXXNGAIVVCRIQVNNSICTE 441
GY+ + + +V L ++ G V +++ + E
Sbjct: 335 FTGYRRQFYFRT-TDVTGVVRLRQGVE------------MVMRGDNVTFTVELIKRVALE 381
Query: 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469
+ RF +R G+TV G VT++
Sbjct: 382 EGL------RFAIREGGRTVGAGVVTKI 403
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 133/322 (41%), Gaps = 38/322 (11%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+NV IGHVD GK+T I + + +KYE+ +D
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE---------------IDNAP 45
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EER +G T+ + T + D PGH YV NMI+G + D +LV++A
Sbjct: 46 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAN----- 100
Query: 163 XXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYN 222
QTREH++ D E + +E ++ L GY
Sbjct: 101 --DGPMPQTREHLLLARQIGVEHVVVYVNKAD---AVQDSEMVELVELEIRELLTEFGYK 155
Query: 223 VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMPI-- 279
++ + S L L + D L + L +A+D I + RD PF +P+
Sbjct: 156 -GEETPIIVGSALCALEQR---DPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVES 210
Query: 280 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVK--VLAIYCDDNRVRHAGPGENLRI 337
+ GTVV G +E G +++GD + + ++ V I + A G+NL
Sbjct: 211 VYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGA 270
Query: 338 RLSGIEEEDILSGFVLSSVAKP 359
+ G++ ED+ G V+ AKP
Sbjct: 271 LVRGLKREDLRRGLVM---AKP 289
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 136/329 (41%), Gaps = 38/329 (11%)
Query: 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMA 95
++T +K H+NV IGHVD GK+T I + + +KYE+
Sbjct: 5 KKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE------------- 51
Query: 96 YIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVIS 155
+D EER +G T+ + T + D PGH YV N I+G + D +LV++
Sbjct: 52 --IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVA 109
Query: 156 ARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPF 215
A QTREH++ D E + +E ++
Sbjct: 110 AN-------DGPXPQTREHLLLARQIGVEHVVVYVNKAD---AVQDSEXVELVELEIREL 159
Query: 216 LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGP 274
L GY ++ + S L L + D L + L +A+D I + RD P
Sbjct: 160 LTEFGYK-GEETPIIVGSALCALEQR---DPELG-LKSVQKLLDAVDTYIPVPTRDLEKP 214
Query: 275 FRMPI--IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVK--VLAIYCDDNRVRHAG 330
F +P+ + GTVV G +E G +++GD + + ++ V I + A
Sbjct: 215 FLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSLDRAE 274
Query: 331 PGENLRIRLSGIEEEDILSGFVLSSVAKP 359
G+NL + G++ ED+ G V AKP
Sbjct: 275 AGDNLGALVRGLKREDLRRGLV---XAKP 300
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 51/335 (15%)
Query: 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE 103
+++N+ GH+D GK+T + ++ A DK ES
Sbjct: 18 KNINLGIFGHIDHGKTTLSKVLTEIAST-----------SAHDKLPESQK---------- 56
Query: 104 ERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXX 163
+G T+++G + F+ E R T++DAPGH + ++S A D+ ++V+ A+
Sbjct: 57 ---RGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT- 112
Query: 164 XXXXXXQTREHVMXXXXXXXXXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223
QT EH++ + N E E M L+++ +N+
Sbjct: 113 ------QTGEHMLILDHFNIPIIVVIT-----KSDNAGTEEIKRTEMIMKSILQST-HNL 160
Query: 224 KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283
K + +PIS G + + + L+ EI R+ F+MP+ F
Sbjct: 161 K-NSSIIPISAKTGFGVDELKN----------LIITTLNNAEII-RNTESYFKMPLDHAF 208
Query: 284 --KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG 341
K GTVV G + G V+ GD L V+P KV +I V A G+ + + + G
Sbjct: 209 PIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQG 268
Query: 342 IEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL 376
++ + I G +L+S + V + +A+++I ++
Sbjct: 269 VDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF 303
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 25 EVSAV-EDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKE 83
EV+A+ + + +E K H+NV IGHVD GK+T I + + + +++
Sbjct: 275 EVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ- 333
Query: 84 AKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISG 143
+D EE+ +G T+ ++T T + +D PGH YV NMI+G
Sbjct: 334 --------------IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITG 379
Query: 144 ASQADIGVLVISARXXXXXXXXXXXXQTREHVM 176
A+Q D +LV++A QTREH++
Sbjct: 380 AAQMDGAILVVAA-------TDGPMPQTREHIL 405
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 19/116 (16%)
Query: 269 RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAI 319
R + PF +PI D F GTVV G+VE G ++ G+ + ++ K V++
Sbjct: 489 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK 548
Query: 320 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL 373
D+ R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL
Sbjct: 549 LLDEGRA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYIL 596
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 22/134 (16%)
Query: 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE 102
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 1 KPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDNAP 45
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXX 162
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 46 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA------ 99
Query: 163 XXXXXXXQTREHVM 176
QTREH++
Sbjct: 100 -TDGPMPQTREHIL 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 201 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 260
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 261 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 312
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 313 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 342
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDNA 52
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 53 PEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA----- 107
Query: 162 XXXXXXXXQTREHVM 176
QTREH++
Sbjct: 108 --TDGPMPQTREHIL 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 22/136 (16%)
Query: 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT 100
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 8 RTKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDN 52
Query: 101 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXX 160
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 53 APEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA---- 108
Query: 161 XXXXXXXXXQTREHVM 176
QTREH++
Sbjct: 109 ---TDGPMPQTREHIL 121
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 270 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 321
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 322 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 351
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDNA 52
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 53 PEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA----- 107
Query: 162 XXXXXXXXQTREHVM 176
QTREH++
Sbjct: 108 --TDGPMPQTREHIL 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 9 TKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDNA 53
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 54 PEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA----- 108
Query: 162 XXXXXXXXQTREHVM 176
QTREH++
Sbjct: 109 --TDGPMPQTREHIL 121
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 210 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 269
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 270 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 321
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 322 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 351
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T L+ + + Y A+ + +D
Sbjct: 8 TKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAARAFDQ--------IDNA 52
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 53 PEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA----- 107
Query: 162 XXXXXXXXQTREHVM 176
QTREH++
Sbjct: 108 --TDGPMPQTREHIL 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 209 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 268
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 269 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 320
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 321 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 350
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 22/135 (16%)
Query: 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN 101
K H+NV IGHVD GK+T I + + + +++ +D
Sbjct: 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ---------------IDNA 337
Query: 102 EEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXX 161
EE+ +G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 338 PEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA----- 392
Query: 162 XXXXXXXXQTREHVM 176
QTREH++
Sbjct: 393 --TDGPMPQTREHIL 405
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 19/116 (16%)
Query: 269 RDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAI 319
R + PF +PI D F GTVV G+VE G ++ G+ + ++ K V++
Sbjct: 489 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK 548
Query: 320 YCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL 373
D+ R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL
Sbjct: 549 LLDEGRA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYIL 596
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 121/308 (39%), Gaps = 89/308 (28%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
E + + +N+ +GHVD GK+T L+G W
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTL---TKALTG--------------------VW---- 34
Query: 97 IMDTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGH 133
DT+ EE +G T+++G A ETE R + +DAPGH
Sbjct: 35 -TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 134 KSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXM 193
++ + M++GAS D +LVI+A QTREH+M +
Sbjct: 94 EALMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKI 147
Query: 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 253
+ + E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 148 ELVDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV----------- 189
Query: 254 GPCLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREG 302
L +A++ TP RDPN P +M ++ F K +G V+ G + G ++ G
Sbjct: 190 ---LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVG 246
Query: 303 DSLLVMPN 310
D + + P
Sbjct: 247 DEIEIRPG 254
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 121/308 (39%), Gaps = 89/308 (28%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
E + + +N+ +GHVD GK+T L+G W
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTL---TKALTG--------------------VW---- 34
Query: 97 IMDTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGH 133
DT+ EE +G T+++G A ETE R + +DAPGH
Sbjct: 35 -TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 134 KSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXM 193
++ + M++GAS D +LVI+A QTREH+M +
Sbjct: 94 EALMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKI 147
Query: 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 253
+ + E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 148 ELVDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV----------- 189
Query: 254 GPCLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREG 302
L +A++ TP RDPN P +M ++ F K +G V+ G + G ++ G
Sbjct: 190 ---LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVG 246
Query: 303 DSLLVMPN 310
D + + P
Sbjct: 247 DEIEIRPG 254
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 36/136 (26%)
Query: 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDT 100
K H+NV IGHVD GK+T L+ + + Y A+
Sbjct: 7 RTKPHVNVGTIGHVDHGKTT-------LTAAITTVLAKTYGGAAR--------------- 44
Query: 101 NEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXX 160
G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 45 -------GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA---- 93
Query: 161 XXXXXXXXXQTREHVM 176
QTREH++
Sbjct: 94 ---TDGPMPQTREHIL 106
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 195 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 254
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 255 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 306
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 307 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 336
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 117/308 (37%), Gaps = 89/308 (28%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
E + +N+ +GHVD GK+T L+G W
Sbjct: 3 EKRKTRQAEVNIGMVGHVDHGKTTL---TKALTG--------------------VW---- 35
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETT-----------------------RFTILDAPGH 133
DT+ EE +G T+++G A E R + +D+PGH
Sbjct: 36 -TDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGH 94
Query: 134 KSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXM 193
++ + M++GAS D +LVI+A QTREH+M +
Sbjct: 95 EALMTTMLAGASLMDGAILVIAAN------EPCPRPQTREHLMALQIIGQKNIIIAQNKI 148
Query: 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 253
+ + E Y +I+ F+K + V ++ +PIS L G N+
Sbjct: 149 ELVDKEKALENYRQIKE----FIKGT---VAENAPIIPISALHGANIDV----------- 190
Query: 254 GPCLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREG 302
L +A++ TP RD N P +M ++ F K +G V+ G + G ++ G
Sbjct: 191 ---LVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVG 247
Query: 303 DSLLVMPN 310
D + + P
Sbjct: 248 DEIEIRPG 255
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 105
+N+ + HVDAGK+T +L+ SG + E + DK D ER
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAIT-------ELGSVDKGTTR------TDNTLLER 49
Query: 106 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 157
+G T++ G F+ E T+ I+D PGH ++ + S D +L+ISA+
Sbjct: 50 QRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK 101
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 117/308 (37%), Gaps = 89/308 (28%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
E + + +N+ +GHVD GK+T L+G W
Sbjct: 2 EKRKSRQAEVNIGXVGHVDHGKTTL---TKALTG--------------------VW---- 34
Query: 97 IMDTNEEERIKGKTVEVGRAH----------------------FETE-TTRFTILDAPGH 133
DT+ EE +G T+++G A ETE R + +DAPGH
Sbjct: 35 -TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH 93
Query: 134 KSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXXXXXXXXXXXM 193
++ ++GAS D +LVI+A QTREH+ +
Sbjct: 94 EALXTTXLAGASLXDGAILVIAAN------EPCPRPQTREHLXALQIIGQKNIIIAQNKI 147
Query: 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN 253
+ + E Y +I+ F++ + V ++ +PIS L G N+
Sbjct: 148 ELVDKEKALENYRQIKE----FIEGT---VAENAPIIPISALHGANIDV----------- 189
Query: 254 GPCLFEALDRIEITP-RDPNGPFRMPIIDKF----------KDMGTVVMGKVESGSVREG 302
L +A++ TP RDPN P + ++ F K +G V+ G + G ++ G
Sbjct: 190 ---LVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVG 246
Query: 303 DSLLVMPN 310
D + + P
Sbjct: 247 DEIEIRPG 254
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXX 167
G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAA-------TDGP 53
Query: 168 XXQTREHVM 176
QTREH++
Sbjct: 54 MPQTREHIL 62
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 211 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 262
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 263 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 292
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXX 167
G T+ ++T T + +D PGH YV NMI+GA+Q D +LV++A
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAA-------TDGP 53
Query: 168 XXQTREHVM 176
QTREH++
Sbjct: 54 MPQTREHIL 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK-------AQVKVLAIYCDDN 324
PF +PI D F GTVV G+VE G ++ G+ + ++ K V++ D+
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 325 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP--VAAVTEFIAQLQIL---ELLDNA 379
R GEN+ + L GI+ E+I G VL AKP + T+F +++ IL E +
Sbjct: 211 RA-----GENVGVLLRGIKREEIERGQVL---AKPGTIKPHTKFESEVYILSKDEGGRHT 262
Query: 380 IFTAGYKAVLH-----IHAVVEECEIVELL 404
F GY+ + + +E E VE++
Sbjct: 263 PFFKGYRPQFYFRTTDVTGTIELPEGVEMV 292
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 50/232 (21%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
R + +D+PGH++ + M+SGAS D +LVI+A QT+EH+M
Sbjct: 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAAN------EPCPQPQTKEHLMALEILGI 135
Query: 184 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243
+D ++E Y++I+ F+K + + ++ +PIS N+
Sbjct: 136 DKIIIVQNKIDLVDEKQAEENYEQIKE----FVKGT---IAENAPIIPISAHHEANIDV- 187
Query: 244 VDKSLCPWWNGPCLFEALDRIEITP-RDPNGPFRMPIIDKF---------KDM-GTVVMG 292
L +A+ TP RDP+ RM + F KD+ G V+ G
Sbjct: 188 -------------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGG 234
Query: 293 KVESGSVREGDSLLVMP-------NKA-----QVKVLAIYCDDNRVRHAGPG 332
+ G + GD + + P NK K++++ + +R A PG
Sbjct: 235 AIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPG 286
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+V H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIVIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+D PGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIAEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+DAPGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+DAPGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+DAPGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 90
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+D PGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+D PGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+D PGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY 96
+ E + KR N+ H+DAGK+TT +IL+ +G++ K E A
Sbjct: 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI-------------HKIGEVHEGAA 50
Query: 97 IMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSY 136
MD E+ER +G T+ + R I+D PGH +
Sbjct: 51 TMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 31/109 (28%)
Query: 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIK 107
V +GHVD GK++ + +Y + K S E+
Sbjct: 7 VTIMGHVDHGKTS----------------LLEYIRSTKVASGEAG--------------- 35
Query: 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
G T +G H ETE T LD PGH ++ GA DI VLV++A
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA 84
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N+ I H+DAGK+TT +IL+ +G++ K E+ A MD E+E+
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRI-------------HKIGETHEGASQMDWMEQEQD 58
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 157
+G T+ E R I+D PGH + + D V V+ A+
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N I H+D GKST +I+ + G + DR ++ ++ D RE I
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT-----------I 54
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
K ++V + + ET + +D PGH + + + + +LV+ A
Sbjct: 55 KAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDA 104
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N I H+D GKST +I+ + G + DR ++ ++ D RE I
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT-----------I 54
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
K ++V + + ET + +D PGH + + + + +LV+ A
Sbjct: 55 KAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDA 104
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N+ I H+DAGK+TT +IL+ +G++ K E+ A MD E+E+
Sbjct: 12 NIGIIAHIDAGKTTTTERILYYTGRI-------------HKIGETHEGASQMDWMEQEQD 58
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGH 133
+G T+ E R I+D PGH
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGH 85
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N+ + H+DAGK+TT +IL+ +G++ K E+ A MD E+E+
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRI-------------HKIGETHEGASQMDWMEQEQD 58
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 157
+G T+ E R I+D PGH + + D V V+ A+
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N+ + H+DAGK+TT +IL+ +G++ K E+ A MD E+E+
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRI-------------HKIGETHEGASQMDWMEQEQD 58
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGH 133
+G T+ E R I+D PGH
Sbjct: 59 RGITITSAATTAAWEGHRVNIIDTPGH 85
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 82 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 135
Query: 184 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 136 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 188
Query: 244 VD 245
++
Sbjct: 189 IE 190
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 76 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 129
Query: 184 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 130 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 182
Query: 244 VD 245
++
Sbjct: 183 IE 184
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 140
Query: 184 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 141 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 193
Query: 244 VD 245
++
Sbjct: 194 IE 195
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
R + +DAPGH+ + M+SGA+ D +LV++A QTREH +
Sbjct: 88 RISFIDAPGHEVLMATMLSGAALMDGAILVVAAN------EPFPQPQTREHFVALGIIGV 141
Query: 184 XXXXXXXXXMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243
+D + + +Y +I+ F K + ++V +P+S L +N+ +
Sbjct: 142 KNLIIVQNKVDVVSKEEALSQYRQIKQ----FTKGTW---AENVPIIPVSALHKINIDSL 194
Query: 244 VD 245
++
Sbjct: 195 IE 196
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 21/115 (18%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N I HVD GKST ++L +G + +R + RE ++DT + ER
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISER-----------EKREQ-----LLDTLDVERE 51
Query: 107 KGKTVEVG--RAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
+G TV++ R ++ + T + ++D PGH + + + + +L+I A
Sbjct: 52 RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDA 106
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
V +GH +GK+T +L+ +G KE + + E D E ++
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGA----------KERRGRVEEG---TTTTDYTPEAKL 57
Query: 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
TV G A R +LDAPG+ +V + AD ++ +SA
Sbjct: 58 HRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA 107
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 20/100 (20%)
Query: 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE 103
R+ N+ H+DAGK+TT +ILF +G K E A MD E+
Sbjct: 9 RYRNIGISAHIDAGKTTTTERILFYTG-------------VNHKIGEVHDGAATMDWMEQ 55
Query: 104 ERIKGKTV-EVGRAHF------ETETTRFTILDAPGHKSY 136
E+ +G T+ F + E R I+D PGH +
Sbjct: 56 EQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 95
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 20/100 (20%)
Query: 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE 103
R+ N+ H+DAGK+TT +ILF +G K E A MD E+
Sbjct: 8 RYRNIGISAHIDAGKTTTTERILFYTG-------------VNHKIGEVHDGAATMDWMEQ 54
Query: 104 ERIKGKTV-EVGRAHF------ETETTRFTILDAPGHKSY 136
E+ +G T+ F + E R I+D PGH +
Sbjct: 55 EQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 94
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 110
I H DAGK+T ++L G + K K A+ + D E E+ +G +
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS---------DWXELEKQRGIS 69
Query: 111 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
V F + +LD PGH + + + D + VI A
Sbjct: 70 VTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDA 115
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI 106
N I HVD GKST ++L +G + +R + RE ++DT + ER
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISER-----------EKREQ-----LLDTLDVERE 51
Query: 107 KGKTV--EVGRAHFETE---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
+G TV + R ++ + T + ++D PGH + + + + +L+I A
Sbjct: 52 RGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDA 106
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 110
I H DAGK+T ++L G + K K A+ + + +MA ER +G +
Sbjct: 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSD--WMAM-------ERERGIS 87
Query: 111 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
V F +LD PGH+ + + + D ++VI A
Sbjct: 88 VTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDA 133
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 259 EALDRIEITPRDPNG-PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVK 315
E ++IE + N P R+ I F G VV+G V+ G ++ D + P ++
Sbjct: 176 EVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIE 235
Query: 316 VLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354
+ +I D + A G + RL ++ +DI GF++S
Sbjct: 236 IRSIQSHDVDIDSAPAGTRVGXRLKNVQAKDIERGFIIS 274
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 41/203 (20%)
Query: 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARXXXXXXXXXXXXQTREHVMXXXXXXX 183
+ T LD PGH ++ G DI +LV++A QT E +
Sbjct: 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAA-------DDGVMKQTVESIQHAK---- 101
Query: 184 XXXXXXXXXMDDHT-VNWSKERYDEIESKMTPFLKA-SGYNV-----KKDVQFLPISGLM 236
D H + + + D+ E+ K Y+V DVQ + +S L
Sbjct: 102 ----------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALT 151
Query: 237 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFKDMGT--VVMGKV 294
G NM + ++ L E L+ DP G +I+ F D G V +
Sbjct: 152 GENMMALAEATI-------ALAEMLE----LKADPTGAVEGTVIESFTDKGRGPVTTAII 200
Query: 295 ESGSVREGDSLLVMPNKAQVKVL 317
+ G++R+G L+ + A+V+++
Sbjct: 201 QRGTLRKGSILVAGKSWAKVRLM 223
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 103 EERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
E+ G T +G + T LD PGH+++ GA DI +LV++A
Sbjct: 35 EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAA 88
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 110
I H DAGK+T ++L L GQ + + ++ W E E+ +G +
Sbjct: 19 ISHPDAGKTTITEKVL-LFGQAIQTAGTVKGRGSNQHAKSDWM--------EMEKQRGIS 69
Query: 111 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
+ F +LD PGH+ + + + D ++VI A
Sbjct: 70 ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT 110
I H DAGK+T ++L L GQ + + ++ W E E+ +G +
Sbjct: 19 ISHPDAGKTTITEKVL-LFGQAIQTAGTVKGRGSNQHAKSDWM--------EMEKQRGIS 69
Query: 111 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISA 156
+ F +LD PGH+ + + + D ++VI A
Sbjct: 70 ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Query: 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE 103
R+ N+ HVDAGK+TT ++LF +G + E D + + +M E+
Sbjct: 12 RYRNIGICAHVDAGKTTTTERVLFYTG------VNHKLGEVHDGAATTDWM-----VQEQ 60
Query: 104 ERIKGKTVEVGR-------AHFETETTRFTILDAPGHKSY 136
ER G T+ + + + R ++D PGH +
Sbjct: 61 ER--GITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF 98
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of
The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQV 72
E + KR N+ H+DAGK+TT +IL+ +G++
Sbjct: 1 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI 34
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 45 HLNVVFIGHVDAGKSTTGGQIL----FLSGQVDDRTIQKYEKEAKDKSRESWY------- 93
L +V +G AGKS TG IL F SG +K EK + SW
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS-----SWKETELVVV 83
Query: 94 -MAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPG 132
I DT EV A E R +L +PG
Sbjct: 84 DTPGIFDT-----------EVPNAETSKEIIRCILLTSPG 112
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 77
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 78 FTCHHVVRLLGVVSKGQPTLVVMELM 103
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 75
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 76 FTCHHVVRLLGVVSKGQPTLVVMELM 101
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 22 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 73
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 74 FTCHHVVRLLGVVSKGQPTLVVMELM 99
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 291 MGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350
+G+ G V EG++ ++ +A+ +V V+ +LR R+ + E ++ G
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVA--------VKTVNESASLRERIEFLNEASVMKG 76
Query: 351 FVLSSVAKPVAAVTEFIAQLQILELL 376
F V + + V++ L ++EL+
Sbjct: 77 FTCHHVVRLLGVVSKGQPTLVVMELM 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,456,531
Number of Sequences: 62578
Number of extensions: 473742
Number of successful extensions: 1519
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 133
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)