Query 011837
Match_columns 476
No_of_seqs 314 out of 3177
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 4E-101 9E-106 741.0 41.9 424 41-471 3-428 (428)
2 PLN00043 elongation factor 1-a 100.0 8.8E-89 1.9E-93 695.9 50.3 429 41-474 3-434 (447)
3 PTZ00141 elongation factor 1- 100.0 7.1E-87 1.5E-91 682.5 51.6 429 41-474 3-434 (446)
4 KOG0459 Polypeptide release fa 100.0 8.7E-87 1.9E-91 632.8 32.7 428 40-471 74-501 (501)
5 KOG0458 Elongation factor 1 al 100.0 6.3E-86 1.4E-90 656.1 36.1 430 36-470 168-602 (603)
6 PRK12317 elongation factor 1-a 100.0 1.5E-81 3.2E-86 645.7 50.1 418 41-472 2-423 (425)
7 TIGR00483 EF-1_alpha translati 100.0 1.3E-80 2.8E-85 638.5 50.6 421 41-472 3-425 (426)
8 COG2895 CysN GTPases - Sulfate 100.0 4.8E-80 1E-84 579.0 37.1 409 41-470 2-416 (431)
9 PRK05124 cysN sulfate adenylyl 100.0 4.2E-77 9E-82 614.8 48.5 410 41-470 23-438 (474)
10 TIGR02034 CysN sulfate adenyly 100.0 4.6E-77 9.9E-82 606.1 44.8 400 46-466 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 3.5E-73 7.5E-78 608.7 48.9 413 41-474 20-438 (632)
12 PLN03126 Elongation factor Tu; 100.0 4.2E-69 9.2E-74 552.5 44.2 389 41-470 77-477 (478)
13 CHL00071 tufA elongation facto 100.0 1.1E-67 2.3E-72 538.3 45.2 390 41-471 8-409 (409)
14 PRK12735 elongation factor Tu; 100.0 1.5E-67 3.3E-72 535.1 46.0 379 41-470 8-395 (396)
15 PRK00049 elongation factor Tu; 100.0 4.6E-67 9.9E-72 531.1 46.3 379 41-470 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 1.4E-66 3E-71 527.7 45.3 377 41-470 8-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 5.7E-66 1.2E-70 524.1 44.8 377 41-470 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 2.6E-65 5.6E-70 522.4 44.2 379 38-470 54-446 (447)
19 COG0050 TufB GTPases - transla 100.0 8.3E-62 1.8E-66 445.1 33.0 378 40-470 7-393 (394)
20 KOG0460 Mitochondrial translat 100.0 6.2E-63 1.3E-67 460.5 25.4 384 38-471 47-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 1.4E-57 3.1E-62 463.9 39.4 346 41-468 30-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 8.7E-55 1.9E-59 460.0 39.2 338 47-474 2-345 (614)
23 PRK04000 translation initiatio 100.0 6.4E-53 1.4E-57 429.0 39.0 344 41-467 5-411 (411)
24 TIGR03680 eif2g_arch translati 100.0 7.3E-53 1.6E-57 429.0 39.3 341 43-466 2-405 (406)
25 COG5258 GTPBP1 GTPase [General 100.0 2.5E-53 5.5E-58 401.7 31.4 365 37-469 109-526 (527)
26 TIGR00475 selB selenocysteine- 100.0 4.7E-51 1E-55 430.6 40.2 335 46-469 1-338 (581)
27 KOG0463 GTP-binding protein GP 100.0 4.3E-52 9.3E-57 391.9 22.9 378 43-475 131-552 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 5.7E-50 1.2E-54 389.4 31.3 337 47-473 2-343 (447)
29 KOG0052 Translation elongation 100.0 2.4E-48 5.2E-53 373.8 11.7 370 41-474 3-376 (391)
30 KOG1143 Predicted translation 100.0 8.1E-46 1.7E-50 349.2 24.7 373 44-472 166-585 (591)
31 COG5257 GCD11 Translation init 100.0 2.3E-42 5E-47 320.9 32.3 343 43-468 8-413 (415)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 2.3E-41 5E-46 356.2 28.7 280 45-359 1-290 (594)
33 cd01883 EF1_alpha Eukaryotic e 100.0 1E-39 2.2E-44 306.1 23.5 218 47-267 1-218 (219)
34 KOG0461 Selenocysteine-specifi 100.0 1.1E-39 2.5E-44 305.0 22.2 346 45-444 7-380 (522)
35 COG1217 TypA Predicted membran 100.0 8.8E-39 1.9E-43 309.9 27.0 279 43-359 3-294 (603)
36 KOG0462 Elongation factor-type 100.0 1.6E-39 3.4E-44 321.0 20.9 266 43-357 58-332 (650)
37 PRK10218 GTP-binding protein; 100.0 2.1E-38 4.6E-43 333.1 28.7 279 43-358 3-293 (607)
38 COG0481 LepA Membrane GTPase L 100.0 2.1E-38 4.6E-43 308.2 25.6 268 41-357 5-283 (603)
39 PRK05433 GTP-binding protein L 100.0 2.3E-38 5E-43 334.6 28.2 269 42-359 4-283 (600)
40 TIGR01393 lepA GTP-binding pro 100.0 4.1E-38 8.9E-43 332.5 29.9 267 44-359 2-279 (595)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 6.6E-38 1.4E-42 291.6 21.7 207 47-267 1-207 (208)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.4E-35 3E-40 271.9 19.8 192 44-266 1-193 (195)
43 PRK07560 elongation factor EF- 100.0 5.9E-34 1.3E-38 309.6 26.0 289 39-357 14-375 (731)
44 PRK00007 elongation factor G; 100.0 4.9E-33 1.1E-37 300.8 29.2 281 42-357 7-394 (693)
45 TIGR00487 IF-2 translation ini 100.0 4.5E-33 9.9E-38 292.6 27.6 249 42-355 84-340 (587)
46 PRK05306 infB translation init 100.0 3.3E-33 7.2E-38 299.8 26.9 250 42-356 287-543 (787)
47 COG0480 FusA Translation elong 100.0 7.2E-33 1.6E-37 292.8 26.8 272 42-357 7-392 (697)
48 PRK12739 elongation factor G; 100.0 9.9E-33 2.1E-37 298.6 26.8 272 42-357 5-391 (691)
49 PRK00741 prfC peptide chain re 100.0 2.4E-32 5.2E-37 284.4 27.6 276 43-357 8-380 (526)
50 TIGR00484 EF-G translation elo 100.0 1.6E-31 3.4E-36 289.5 29.4 282 41-357 6-392 (689)
51 PF00009 GTP_EFTU: Elongation 100.0 1.6E-32 3.5E-37 251.5 18.4 175 43-243 1-178 (188)
52 TIGR00503 prfC peptide chain r 100.0 1.9E-31 4E-36 277.8 27.0 276 42-357 8-381 (527)
53 PRK13351 elongation factor G; 100.0 8.5E-31 1.9E-35 284.4 28.8 273 42-357 5-390 (687)
54 CHL00189 infB translation init 100.0 4.6E-31 9.9E-36 280.8 23.7 251 42-356 241-501 (742)
55 KOG1145 Mitochondrial translat 100.0 4.4E-31 9.5E-36 261.1 20.5 256 35-354 143-405 (683)
56 TIGR00490 aEF-2 translation el 100.0 7.4E-31 1.6E-35 284.6 22.6 290 40-357 14-374 (720)
57 COG4108 PrfC Peptide chain rel 100.0 2E-31 4.4E-36 257.6 15.3 279 43-357 10-382 (528)
58 COG0532 InfB Translation initi 100.0 3.9E-30 8.4E-35 257.4 22.6 234 43-337 3-245 (509)
59 PRK04004 translation initiatio 100.0 1E-29 2.2E-34 267.9 25.6 260 42-353 3-325 (586)
60 PRK12740 elongation factor G; 100.0 1.7E-29 3.7E-34 273.8 26.6 264 51-357 1-373 (668)
61 PLN00116 translation elongatio 100.0 1.1E-29 2.4E-34 279.3 24.6 294 38-357 12-471 (843)
62 TIGR00491 aIF-2 translation in 100.0 7.2E-29 1.6E-33 260.3 25.9 258 44-353 3-323 (590)
63 PTZ00416 elongation factor 2; 100.0 9.2E-29 2E-33 271.4 24.9 155 41-218 15-185 (836)
64 KOG0466 Translation initiation 100.0 4.3E-30 9.2E-35 237.3 9.6 354 36-468 29-458 (466)
65 KOG0465 Mitochondrial elongati 100.0 7.1E-29 1.5E-33 248.1 16.5 278 39-357 33-421 (721)
66 cd01885 EF2 EF2 (for archaea a 100.0 1.2E-28 2.6E-33 229.8 16.3 173 46-241 1-201 (222)
67 KOG0469 Elongation factor 2 [T 99.9 1.1E-27 2.5E-32 233.8 12.1 306 37-367 11-484 (842)
68 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.5E-26 5.5E-31 215.1 17.3 192 47-267 1-224 (224)
69 cd01886 EF-G Elongation factor 99.9 1.9E-26 4.1E-31 221.7 15.2 174 47-251 1-175 (270)
70 cd01888 eIF2_gamma eIF2-gamma 99.9 8E-26 1.7E-30 209.5 16.4 157 46-243 1-190 (203)
71 KOG0464 Elongation factor G [T 99.9 3.5E-27 7.5E-32 225.9 6.1 271 43-357 35-419 (753)
72 PRK14845 translation initiatio 99.9 2E-24 4.3E-29 236.8 26.4 227 104-355 489-782 (1049)
73 cd01889 SelB_euk SelB subfamil 99.9 3E-25 6.4E-30 204.1 16.8 163 46-243 1-177 (192)
74 KOG0467 Translation elongation 99.9 4.8E-24 1E-28 218.2 21.8 178 40-241 4-206 (887)
75 cd04168 TetM_like Tet(M)-like 99.9 2.4E-24 5.1E-29 203.7 17.8 144 47-212 1-144 (237)
76 cd01891 TypA_BipA TypA (tyrosi 99.9 4.6E-24 1E-28 196.5 17.6 171 45-243 2-173 (194)
77 cd04167 Snu114p Snu114p subfam 99.9 4.9E-24 1.1E-28 199.2 17.7 165 46-232 1-176 (213)
78 cd01890 LepA LepA subfamily. 99.9 1.8E-23 3.8E-28 189.7 17.0 163 46-243 1-168 (179)
79 cd04169 RF3 RF3 subfamily. Pe 99.9 2.6E-23 5.7E-28 199.8 16.2 150 45-216 2-151 (267)
80 cd03704 eRF3c_III This family 99.9 3.7E-23 8E-28 171.4 12.7 107 362-469 2-108 (108)
81 cd04171 SelB SelB subfamily. 99.9 2E-22 4.4E-27 179.6 17.8 155 47-243 2-157 (164)
82 cd04093 HBS1_C HBS1_C: this fa 99.9 2.7E-22 5.9E-27 166.1 14.3 106 362-469 2-107 (107)
83 KOG0468 U5 snRNP-specific prot 99.9 1E-21 2.2E-26 198.0 19.4 171 3-195 80-261 (971)
84 KOG1144 Translation initiation 99.9 1.4E-22 3.1E-27 206.1 13.4 246 42-337 472-793 (1064)
85 cd03705 EF1_alpha_III Domain I 99.9 8.3E-22 1.8E-26 162.3 11.4 102 362-466 2-104 (104)
86 cd00881 GTP_translation_factor 99.9 7.7E-21 1.7E-25 173.5 17.5 170 47-243 1-178 (189)
87 cd04170 EF-G_bact Elongation f 99.9 7.2E-21 1.6E-25 184.1 14.1 164 47-243 1-164 (268)
88 cd04095 CysN_NoDQ_III TCysN_No 99.8 1.9E-20 4.2E-25 153.8 12.1 100 362-466 2-103 (103)
89 PF03143 GTP_EFTU_D3: Elongati 99.8 6.4E-20 1.4E-24 149.1 13.3 98 359-469 1-98 (99)
90 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-19 3.5E-24 161.7 15.8 152 46-243 1-157 (168)
91 COG1160 Predicted GTPases [Gen 99.8 1.4E-19 2.9E-24 179.1 15.0 158 43-245 176-344 (444)
92 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-19 3.5E-24 157.7 9.7 144 46-243 1-152 (156)
93 COG1160 Predicted GTPases [Gen 99.8 4.1E-19 8.8E-24 175.7 12.8 144 46-243 4-156 (444)
94 PRK00093 GTP-binding protein D 99.8 8.4E-19 1.8E-23 181.6 15.9 156 43-245 171-337 (435)
95 COG1159 Era GTPase [General fu 99.8 7.3E-19 1.6E-23 165.1 13.0 153 43-244 4-164 (298)
96 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.1E-19 1.3E-23 157.9 11.7 156 47-243 1-160 (167)
97 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-18 2.4E-23 180.4 15.2 157 43-245 170-337 (429)
98 cd01513 Translation_factor_III 99.8 1.4E-18 2.9E-23 142.8 12.3 101 362-466 2-102 (102)
99 cd01895 EngA2 EngA2 subfamily. 99.8 7.5E-18 1.6E-22 151.2 16.3 154 45-243 2-166 (174)
100 TIGR00436 era GTP-binding prot 99.8 1E-17 2.3E-22 162.1 16.7 147 47-244 2-156 (270)
101 cd01864 Rab19 Rab19 subfamily. 99.7 1.3E-17 2.7E-22 149.3 12.8 153 45-243 3-157 (165)
102 cd03693 EF1_alpha_II EF1_alpha 99.7 1.1E-17 2.3E-22 133.9 10.9 87 272-358 2-90 (91)
103 cd01894 EngA1 EngA1 subfamily. 99.7 3E-17 6.5E-22 144.9 14.7 141 49-243 1-149 (157)
104 TIGR03598 GTPase_YsxC ribosome 99.7 3.8E-17 8.3E-22 148.4 15.7 153 41-241 14-179 (179)
105 TIGR03594 GTPase_EngA ribosome 99.7 2.6E-17 5.6E-22 170.2 14.3 143 47-243 1-151 (429)
106 PRK15494 era GTPase Era; Provi 99.7 2.7E-17 5.8E-22 163.8 13.8 151 43-244 50-208 (339)
107 cd01879 FeoB Ferrous iron tran 99.7 3.4E-17 7.3E-22 145.0 12.3 140 50-243 1-148 (158)
108 cd04154 Arl2 Arl2 subfamily. 99.7 6.2E-17 1.4E-21 146.1 13.9 150 44-243 13-166 (173)
109 cd04089 eRF3_II eRF3_II: domai 99.7 4.5E-17 9.7E-22 127.7 11.1 82 274-355 1-82 (82)
110 PRK03003 GTP-binding protein D 99.7 6E-17 1.3E-21 168.7 15.3 155 44-245 210-375 (472)
111 PRK03003 GTP-binding protein D 99.7 1.1E-16 2.4E-21 166.7 16.2 147 43-243 36-190 (472)
112 cd04157 Arl6 Arl6 subfamily. 99.7 1E-16 2.2E-21 142.6 13.8 149 47-243 1-155 (162)
113 cd03698 eRF3_II_like eRF3_II_l 99.7 1.1E-16 2.3E-21 125.9 11.2 82 274-355 1-83 (83)
114 cd04124 RabL2 RabL2 subfamily. 99.7 3.5E-16 7.6E-21 139.5 16.0 148 46-244 1-150 (161)
115 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.8E-16 6E-21 140.1 14.9 148 45-243 2-155 (164)
116 TIGR00231 small_GTP small GTP- 99.7 1.6E-16 3.5E-21 139.6 13.0 152 46-243 2-155 (161)
117 cd01860 Rab5_related Rab5-rela 99.7 2.1E-16 4.7E-21 140.7 13.9 150 46-243 2-154 (163)
118 cd01861 Rab6 Rab6 subfamily. 99.7 1.2E-16 2.6E-21 142.1 12.2 148 46-243 1-153 (161)
119 cd04151 Arl1 Arl1 subfamily. 99.7 1.9E-16 4.1E-21 140.6 13.4 147 47-243 1-151 (158)
120 cd04113 Rab4 Rab4 subfamily. 99.7 1.6E-16 3.5E-21 141.4 12.7 148 46-243 1-153 (161)
121 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.6E-16 5.5E-21 139.7 13.5 146 46-243 2-153 (162)
122 COG2229 Predicted GTPase [Gene 99.7 6.7E-16 1.5E-20 134.6 15.6 163 40-243 5-169 (187)
123 cd01898 Obg Obg subfamily. Th 99.7 2E-16 4.4E-21 141.9 13.0 147 47-243 2-162 (170)
124 cd04149 Arf6 Arf6 subfamily. 99.7 1.9E-16 4E-21 142.3 12.6 150 44-243 8-161 (168)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.5E-16 3.4E-21 144.9 12.1 157 45-245 3-163 (183)
126 smart00175 RAB Rab subfamily o 99.7 2.3E-16 5.1E-21 140.5 12.9 147 46-243 1-153 (164)
127 PRK00089 era GTPase Era; Revie 99.7 6.1E-16 1.3E-20 151.7 17.0 151 44-243 4-162 (292)
128 cd01867 Rab8_Rab10_Rab13_like 99.7 2.5E-16 5.4E-21 141.2 12.9 149 45-243 3-156 (167)
129 PRK00093 GTP-binding protein D 99.7 4.9E-16 1.1E-20 160.9 16.4 144 46-243 2-153 (435)
130 cd01897 NOG NOG1 is a nucleola 99.7 5.7E-16 1.2E-20 138.8 14.5 148 46-243 1-159 (168)
131 PRK09554 feoB ferrous iron tra 99.7 5.3E-16 1.1E-20 168.4 16.4 145 45-243 3-159 (772)
132 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.3E-16 7.1E-21 141.5 12.5 150 44-243 14-167 (174)
133 cd04116 Rab9 Rab9 subfamily. 99.7 2.2E-15 4.7E-20 135.4 17.8 153 44-243 4-162 (170)
134 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.9E-16 8.6E-21 139.6 12.9 149 45-243 2-155 (166)
135 cd01862 Rab7 Rab7 subfamily. 99.7 1.6E-15 3.4E-20 136.3 16.6 149 46-243 1-158 (172)
136 cd04106 Rab23_lke Rab23-like s 99.7 9.5E-16 2.1E-20 136.4 15.0 148 46-243 1-154 (162)
137 PLN00223 ADP-ribosylation fact 99.7 6.1E-16 1.3E-20 140.7 13.8 151 43-243 15-169 (181)
138 PRK09518 bifunctional cytidyla 99.7 1.3E-15 2.7E-20 166.1 18.5 153 37-243 267-427 (712)
139 cd04158 ARD1 ARD1 subfamily. 99.7 2.5E-16 5.5E-21 141.6 10.8 148 47-243 1-152 (169)
140 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.4E-16 1.4E-20 136.3 13.2 138 46-243 2-148 (157)
141 cd01863 Rab18 Rab18 subfamily. 99.7 1.3E-15 2.9E-20 135.3 15.3 149 46-243 1-153 (161)
142 PRK15467 ethanolamine utilizat 99.7 6.1E-16 1.3E-20 137.4 12.9 133 47-244 3-139 (158)
143 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1E-15 2.3E-20 141.6 14.9 151 46-245 1-161 (201)
144 cd04150 Arf1_5_like Arf1-Arf5- 99.7 8.8E-16 1.9E-20 136.6 13.8 148 46-243 1-152 (159)
145 cd01866 Rab2 Rab2 subfamily. 99.7 6.7E-16 1.4E-20 138.6 13.2 150 45-243 4-157 (168)
146 cd04114 Rab30 Rab30 subfamily. 99.7 6.7E-16 1.5E-20 138.4 13.2 151 43-243 5-160 (169)
147 PRK09518 bifunctional cytidyla 99.7 5E-16 1.1E-20 169.3 14.6 155 44-245 449-614 (712)
148 smart00173 RAS Ras subfamily o 99.7 4.7E-16 1E-20 138.7 11.8 146 46-243 1-153 (164)
149 cd01868 Rab11_like Rab11-like. 99.7 8.2E-16 1.8E-20 137.4 13.3 149 45-243 3-156 (165)
150 cd04140 ARHI_like ARHI subfami 99.7 1.8E-15 3.8E-20 135.4 15.4 148 46-243 2-156 (165)
151 cd04119 RJL RJL (RabJ-Like) su 99.7 1E-15 2.2E-20 136.7 13.8 147 46-243 1-158 (168)
152 cd00154 Rab Rab family. Rab G 99.7 2.2E-15 4.8E-20 132.7 15.8 148 46-243 1-153 (159)
153 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.9E-16 1.3E-20 137.5 12.1 148 47-243 1-153 (160)
154 cd01865 Rab3 Rab3 subfamily. 99.7 7.8E-16 1.7E-20 137.7 12.9 149 46-244 2-155 (165)
155 PRK04213 GTP-binding protein; 99.7 9.7E-16 2.1E-20 141.8 13.9 154 44-243 8-183 (201)
156 cd04120 Rab12 Rab12 subfamily. 99.7 7.1E-16 1.5E-20 142.4 12.7 150 47-245 2-156 (202)
157 TIGR02528 EutP ethanolamine ut 99.7 6.7E-16 1.5E-20 134.5 11.5 131 47-243 2-136 (142)
158 cd04127 Rab27A Rab27a subfamil 99.7 2.6E-15 5.7E-20 136.2 15.8 150 44-244 3-169 (180)
159 cd04122 Rab14 Rab14 subfamily. 99.7 1E-15 2.2E-20 137.1 12.7 149 45-243 2-155 (166)
160 cd00879 Sar1 Sar1 subfamily. 99.7 6.7E-16 1.5E-20 141.4 11.7 152 43-243 17-182 (190)
161 smart00177 ARF ARF-like small 99.7 9.3E-16 2E-20 138.7 12.2 150 44-243 12-165 (175)
162 cd04121 Rab40 Rab40 subfamily. 99.7 4.2E-15 9.1E-20 135.9 16.6 152 44-245 5-160 (189)
163 cd04142 RRP22 RRP22 subfamily. 99.7 2.5E-15 5.3E-20 138.6 15.1 150 46-244 1-166 (198)
164 cd04136 Rap_like Rap-like subf 99.7 2E-15 4.3E-20 134.4 14.1 147 46-243 2-154 (163)
165 cd01878 HflX HflX subfamily. 99.7 5.1E-16 1.1E-20 144.0 10.5 147 42-243 38-196 (204)
166 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3E-15 6.4E-20 134.7 15.2 149 45-243 2-160 (170)
167 cd03694 GTPBP_II Domain II of 99.7 8.9E-16 1.9E-20 121.6 10.2 81 275-355 1-87 (87)
168 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.4E-15 5.2E-20 135.4 14.4 152 47-245 2-158 (170)
169 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.5E-15 3.2E-20 134.7 12.7 147 47-243 1-151 (158)
170 cd04175 Rap1 Rap1 subgroup. T 99.6 8.4E-16 1.8E-20 137.2 11.2 146 46-243 2-154 (164)
171 cd04112 Rab26 Rab26 subfamily. 99.6 1.7E-15 3.7E-20 139.0 13.0 150 46-244 1-155 (191)
172 smart00178 SAR Sar1p-like memb 99.6 1.9E-15 4.2E-20 137.8 12.9 156 43-243 15-176 (184)
173 cd04144 Ras2 Ras2 subfamily. 99.6 1.3E-15 2.8E-20 139.7 11.8 148 47-245 1-156 (190)
174 cd03697 EFTU_II EFTU_II: Elong 99.6 7.4E-16 1.6E-20 122.2 8.8 83 275-357 1-87 (87)
175 cd04163 Era Era subfamily. Er 99.6 6.2E-15 1.3E-19 131.0 15.8 150 45-243 3-160 (168)
176 cd04128 Spg1 Spg1p. Spg1p (se 99.6 6.6E-15 1.4E-19 134.0 16.2 154 46-245 1-159 (182)
177 cd04147 Ras_dva Ras-dva subfam 99.6 3.3E-15 7.2E-20 137.9 14.4 152 47-244 1-155 (198)
178 cd04109 Rab28 Rab28 subfamily. 99.6 5.6E-15 1.2E-19 138.2 16.1 151 46-245 1-159 (215)
179 PRK00454 engB GTP-binding prot 99.6 6.5E-15 1.4E-19 135.5 16.3 151 43-243 22-185 (196)
180 PF10662 PduV-EutP: Ethanolami 99.6 1.6E-15 3.5E-20 129.6 10.9 132 46-243 2-137 (143)
181 PLN03118 Rab family protein; P 99.6 4.7E-15 1E-19 138.3 15.2 152 43-245 12-170 (211)
182 PTZ00133 ADP-ribosylation fact 99.6 2.8E-15 6.1E-20 136.4 13.3 152 43-244 15-170 (182)
183 cd04139 RalA_RalB RalA/RalB su 99.6 2.2E-15 4.8E-20 134.1 12.3 150 46-244 1-154 (164)
184 cd00877 Ran Ran (Ras-related n 99.6 7.7E-15 1.7E-19 131.5 15.6 147 46-244 1-151 (166)
185 cd04155 Arl3 Arl3 subfamily. 99.6 2.3E-15 4.9E-20 135.6 12.2 151 43-243 12-166 (173)
186 KOG0092 GTPase Rab5/YPT51 and 99.6 2.8E-15 6.1E-20 131.3 12.0 150 43-243 3-158 (200)
187 cd04135 Tc10 TC10 subfamily. 99.6 1.8E-15 3.8E-20 136.5 11.2 154 46-243 1-165 (174)
188 cd04159 Arl10_like Arl10-like 99.6 5.5E-15 1.2E-19 130.3 14.1 147 48-243 2-152 (159)
189 PTZ00369 Ras-like protein; Pro 99.6 5.6E-15 1.2E-19 135.4 14.4 152 44-244 4-159 (189)
190 cd04110 Rab35 Rab35 subfamily. 99.6 8.8E-15 1.9E-19 135.2 15.6 152 44-245 5-160 (199)
191 cd01893 Miro1 Miro1 subfamily. 99.6 7.2E-15 1.6E-19 131.6 14.6 153 46-244 1-156 (166)
192 PRK12299 obgE GTPase CgtA; Rev 99.6 4.5E-15 9.8E-20 146.9 14.3 153 43-245 156-321 (335)
193 cd04126 Rab20 Rab20 subfamily. 99.6 2.7E-15 5.9E-20 140.1 12.0 158 46-245 1-183 (220)
194 TIGR03156 GTP_HflX GTP-binding 99.6 1.6E-15 3.5E-20 151.3 11.1 144 44-243 188-343 (351)
195 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 4.5E-15 9.8E-20 132.8 12.8 146 48-243 2-157 (164)
196 cd01871 Rac1_like Rac1-like su 99.6 1.1E-14 2.4E-19 131.6 15.4 154 46-243 2-166 (174)
197 PRK12298 obgE GTPase CgtA; Rev 99.6 4.5E-15 9.8E-20 149.7 14.0 156 44-245 158-326 (390)
198 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.8E-15 8.3E-20 133.6 12.1 149 47-242 1-159 (167)
199 PF00025 Arf: ADP-ribosylation 99.6 7.9E-15 1.7E-19 132.6 14.0 153 42-243 11-167 (175)
200 cd04143 Rhes_like Rhes_like su 99.6 6E-15 1.3E-19 140.5 13.5 150 46-243 1-162 (247)
201 PRK05291 trmE tRNA modificatio 99.6 1.3E-15 2.9E-20 157.1 9.6 141 44-244 214-362 (449)
202 cd01882 BMS1 Bms1. Bms1 is an 99.6 3.1E-14 6.6E-19 133.9 18.0 166 42-266 36-201 (225)
203 cd04123 Rab21 Rab21 subfamily. 99.6 5.4E-15 1.2E-19 131.2 12.2 147 46-243 1-153 (162)
204 cd00157 Rho Rho (Ras homology) 99.6 6.1E-15 1.3E-19 132.3 12.6 155 46-243 1-164 (171)
205 cd03696 selB_II selB_II: this 99.6 4.2E-15 9.1E-20 116.9 10.0 80 275-354 1-82 (83)
206 cd04118 Rab24 Rab24 subfamily. 99.6 8.7E-15 1.9E-19 134.4 13.7 155 46-245 1-159 (193)
207 cd04176 Rap2 Rap2 subgroup. T 99.6 1E-14 2.2E-19 130.0 13.7 147 46-243 2-154 (163)
208 smart00174 RHO Rho (Ras homolo 99.6 1.4E-14 3.1E-19 130.5 14.6 153 48-244 1-164 (174)
209 cd01892 Miro2 Miro2 subfamily. 99.6 7.4E-15 1.6E-19 132.0 12.3 153 43-243 2-157 (169)
210 cd04132 Rho4_like Rho4-like su 99.6 9E-15 2E-19 133.6 13.1 154 46-245 1-160 (187)
211 cd04137 RheB Rheb (Ras Homolog 99.6 6E-15 1.3E-19 133.8 11.8 148 46-245 2-156 (180)
212 PLN03110 Rab GTPase; Provision 99.6 1E-14 2.2E-19 136.5 13.6 151 44-245 11-167 (216)
213 PLN03071 GTP-binding nuclear p 99.6 2.1E-14 4.6E-19 134.6 15.8 150 43-244 11-164 (219)
214 PRK12296 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.3E-19 149.6 14.7 159 42-245 156-333 (500)
215 cd00876 Ras Ras family. The R 99.6 6.5E-15 1.4E-19 130.4 11.5 146 47-243 1-152 (160)
216 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.3E-14 4.9E-19 129.7 15.2 150 46-243 2-166 (175)
217 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.4E-14 2.9E-19 129.3 13.5 149 46-243 1-155 (164)
218 cd03695 CysN_NodQ_II CysN_NodQ 99.6 9.7E-15 2.1E-19 113.9 10.9 79 275-355 1-81 (81)
219 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1E-14 2.3E-19 131.5 12.8 147 46-244 3-156 (172)
220 cd04177 RSR1 RSR1 subgroup. R 99.6 7.5E-15 1.6E-19 131.7 11.7 151 46-243 2-155 (168)
221 COG0218 Predicted GTPase [Gene 99.6 1.7E-14 3.7E-19 128.7 13.6 155 42-243 21-188 (200)
222 TIGR02729 Obg_CgtA Obg family 99.6 9E-15 1.9E-19 144.7 13.1 153 43-243 155-320 (329)
223 cd04117 Rab15 Rab15 subfamily. 99.6 2.1E-14 4.5E-19 128.0 14.1 147 46-243 1-153 (161)
224 cd04125 RabA_like RabA-like su 99.6 1.3E-14 2.9E-19 132.6 12.2 149 46-245 1-155 (188)
225 cd01875 RhoG RhoG subfamily. 99.6 5.6E-14 1.2E-18 129.0 16.3 155 45-244 3-169 (191)
226 cd00880 Era_like Era (E. coli 99.6 1.7E-14 3.6E-19 126.8 12.3 147 50-243 1-155 (163)
227 cd03706 mtEFTU_III Domain III 99.6 3.1E-14 6.6E-19 114.5 12.6 88 363-469 3-93 (93)
228 PRK12297 obgE GTPase CgtA; Rev 99.6 2.8E-14 6.1E-19 144.8 15.3 152 43-245 156-320 (424)
229 PLN03108 Rab family protein; P 99.6 1.9E-14 4E-19 134.2 12.8 150 44-244 5-160 (210)
230 cd04111 Rab39 Rab39 subfamily. 99.6 2.1E-14 4.6E-19 133.8 12.7 152 45-245 2-159 (211)
231 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.9E-14 6.3E-19 146.3 14.4 144 43-244 201-352 (442)
232 cd01881 Obg_like The Obg-like 99.6 1.5E-14 3.3E-19 130.3 11.0 147 50-243 1-168 (176)
233 cd04134 Rho3 Rho3 subfamily. 99.6 3.8E-14 8.2E-19 129.9 13.6 156 46-244 1-166 (189)
234 COG0486 ThdF Predicted GTPase 99.6 1.9E-14 4.1E-19 143.2 12.3 147 43-245 215-369 (454)
235 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.4E-14 3E-19 130.7 10.3 155 46-244 1-166 (173)
236 cd04146 RERG_RasL11_like RERG/ 99.6 1.4E-14 3E-19 129.6 9.9 147 47-243 1-155 (165)
237 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1E-13 2.2E-18 126.1 15.5 156 42-244 2-172 (182)
238 TIGR00437 feoB ferrous iron tr 99.6 3.9E-14 8.5E-19 150.5 14.5 140 52-245 1-148 (591)
239 KOG0084 GTPase Rab1/YPT1, smal 99.6 4.6E-14 1E-18 124.2 12.3 155 44-244 8-164 (205)
240 PRK11058 GTPase HflX; Provisio 99.5 3.5E-14 7.6E-19 144.9 13.1 150 44-244 196-354 (426)
241 cd01870 RhoA_like RhoA-like su 99.5 8.2E-14 1.8E-18 125.7 14.0 153 46-243 2-166 (175)
242 cd03708 GTPBP_III Domain III o 99.5 4E-14 8.7E-19 112.5 10.5 85 362-469 2-87 (87)
243 cd04133 Rop_like Rop subfamily 99.5 2.7E-14 5.7E-19 129.1 10.5 154 46-244 2-165 (176)
244 KOG1423 Ras-like GTPase ERA [C 99.5 4E-14 8.6E-19 132.4 11.7 175 36-253 63-277 (379)
245 smart00176 RAN Ran (Ras-relate 99.5 1.3E-13 2.7E-18 127.2 15.0 143 51-245 1-147 (200)
246 cd01876 YihA_EngB The YihA (En 99.5 2E-13 4.3E-18 121.6 15.4 148 48-243 2-162 (170)
247 cd03707 EFTU_III Domain III of 99.5 9.1E-14 2E-18 111.1 11.2 85 363-466 3-90 (90)
248 cd04105 SR_beta Signal recogni 99.5 1.6E-13 3.4E-18 127.1 14.1 132 46-215 1-141 (203)
249 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 5.1E-13 1.1E-17 125.6 17.3 158 43-245 11-181 (232)
250 PRK09866 hypothetical protein; 99.5 3.3E-13 7.1E-18 139.3 16.9 109 122-243 229-344 (741)
251 cd01896 DRG The developmentall 99.5 2.3E-13 5E-18 128.6 14.0 82 47-159 2-90 (233)
252 cd04131 Rnd Rnd subfamily. Th 99.5 6.2E-13 1.3E-17 120.6 15.7 152 46-243 2-167 (178)
253 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 4.2E-13 9E-18 117.7 13.7 153 42-244 19-177 (221)
254 COG0370 FeoB Fe2+ transport sy 99.5 1.5E-13 3.2E-18 142.5 12.8 145 45-243 3-155 (653)
255 KOG0073 GTP-binding ADP-ribosy 99.5 5.3E-13 1.1E-17 113.7 13.3 152 43-243 14-169 (185)
256 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 4.1E-13 8.8E-18 125.6 13.8 152 46-244 2-168 (222)
257 cd04148 RGK RGK subfamily. Th 99.5 3.1E-13 6.8E-18 126.9 12.9 150 46-244 1-155 (221)
258 KOG0078 GTP-binding protein SE 99.5 2.6E-13 5.5E-18 121.3 11.1 155 42-243 9-165 (207)
259 cd00882 Ras_like_GTPase Ras-li 99.5 3.3E-13 7.1E-18 117.1 11.6 143 50-243 1-151 (157)
260 PF00071 Ras: Ras family; Int 99.5 4.2E-13 9.2E-18 119.3 11.6 148 47-243 1-152 (162)
261 KOG0098 GTPase Rab2, small G p 99.5 2.5E-13 5.5E-18 118.1 9.1 151 45-245 6-161 (216)
262 KOG0394 Ras-related GTPase [Ge 99.4 3.7E-13 8.1E-18 116.8 9.3 154 42-243 6-169 (210)
263 PTZ00132 GTP-binding nuclear p 99.4 4.5E-12 9.8E-17 118.5 16.2 150 42-243 6-159 (215)
264 cd04129 Rho2 Rho2 subfamily. 99.4 9.3E-13 2E-17 120.4 11.2 154 46-244 2-165 (187)
265 PF01926 MMR_HSR1: 50S ribosom 99.4 1.3E-12 2.9E-17 109.6 11.0 107 47-192 1-116 (116)
266 cd04103 Centaurin_gamma Centau 99.4 1.9E-12 4.2E-17 114.9 11.9 144 46-243 1-150 (158)
267 COG2262 HflX GTPases [General 99.4 7.7E-13 1.7E-17 129.5 9.3 164 25-243 172-347 (411)
268 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.9E-12 4.1E-17 119.3 11.5 138 46-220 1-153 (196)
269 cd04104 p47_IIGP_like p47 (47- 99.4 8.6E-12 1.9E-16 115.0 14.6 154 46-242 2-174 (197)
270 cd01873 RhoBTB RhoBTB subfamil 99.4 1E-11 2.2E-16 114.2 15.0 107 122-243 65-187 (195)
271 COG1163 DRG Predicted GTPase [ 99.4 5.6E-12 1.2E-16 119.4 12.7 90 40-160 58-154 (365)
272 KOG1489 Predicted GTP-binding 99.4 2.7E-12 5.8E-17 121.0 10.4 149 43-243 194-358 (366)
273 KOG0086 GTPase Rab4, small G p 99.4 1.6E-12 3.5E-17 109.1 7.8 149 45-243 9-162 (214)
274 KOG1191 Mitochondrial GTPase [ 99.4 8.8E-13 1.9E-17 131.0 6.8 164 37-246 260-444 (531)
275 KOG0087 GTPase Rab11/YPT3, sma 99.3 2.3E-12 4.9E-17 114.7 7.9 146 45-245 14-169 (222)
276 PF09439 SRPRB: Signal recogni 99.3 5.1E-12 1.1E-16 113.0 10.0 114 45-198 3-127 (181)
277 COG1084 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 118.2 11.7 152 44-243 167-327 (346)
278 KOG0076 GTP-binding ADP-ribosy 99.3 3E-12 6.5E-17 110.2 6.9 165 41-243 13-178 (197)
279 KOG0080 GTPase Rab18, small G 99.3 5.8E-12 1.3E-16 106.7 8.2 149 44-243 10-165 (209)
280 COG3596 Predicted GTPase [Gene 99.3 1.7E-11 3.7E-16 114.0 12.1 161 38-243 32-213 (296)
281 cd04102 RabL3 RabL3 (Rab-like3 99.3 5.4E-11 1.2E-15 109.7 15.4 151 46-242 1-180 (202)
282 PLN00023 GTP-binding protein; 99.3 4.3E-11 9.4E-16 116.0 14.7 146 41-222 17-190 (334)
283 KOG0093 GTPase Rab3, small G p 99.3 4.9E-12 1.1E-16 105.6 6.4 154 46-245 22-176 (193)
284 KOG1532 GTPase XAB1, interacts 99.3 7.6E-12 1.6E-16 115.4 7.8 202 40-244 14-256 (366)
285 KOG0095 GTPase Rab30, small G 99.3 2.4E-11 5.3E-16 101.6 9.6 151 44-243 6-160 (213)
286 PF08477 Miro: Miro-like prote 99.3 6.9E-12 1.5E-16 105.5 6.6 114 47-194 1-119 (119)
287 KOG0070 GTP-binding ADP-ribosy 99.3 2.2E-11 4.7E-16 106.7 9.8 154 40-243 12-169 (181)
288 cd01850 CDC_Septin CDC/Septin. 99.3 1.2E-10 2.5E-15 112.8 15.4 143 45-221 4-177 (276)
289 KOG0075 GTP-binding ADP-ribosy 99.3 2.4E-11 5.2E-16 101.6 9.0 150 43-243 18-173 (186)
290 COG1100 GTPase SAR1 and relate 99.2 1.4E-10 3E-15 108.6 14.3 159 45-244 5-177 (219)
291 KOG0090 Signal recognition par 99.2 1E-10 2.2E-15 104.4 11.9 112 46-199 39-161 (238)
292 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 1.8E-10 3.9E-15 107.6 13.4 153 47-236 1-161 (232)
293 cd03688 eIF2_gamma_II eIF2_gam 99.2 2.3E-10 5E-15 92.1 11.6 87 271-357 2-113 (113)
294 cd04094 selB_III This family r 99.2 2.2E-10 4.9E-15 92.7 11.5 95 350-466 1-97 (97)
295 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 3.6E-10 7.8E-15 88.8 11.2 75 277-353 3-82 (84)
296 PTZ00099 rab6; Provisional 99.2 1.4E-10 3.1E-15 104.8 9.8 104 122-244 28-134 (176)
297 KOG0088 GTPase Rab21, small G 99.1 1.2E-10 2.7E-15 98.4 7.6 156 45-245 13-168 (218)
298 COG0536 Obg Predicted GTPase [ 99.1 2.9E-10 6.3E-15 108.8 10.5 152 43-245 157-326 (369)
299 KOG0097 GTPase Rab14, small G 99.1 1.2E-09 2.7E-14 90.5 12.3 146 45-243 11-164 (215)
300 cd01853 Toc34_like Toc34-like 99.1 3.6E-09 7.9E-14 100.6 17.3 125 39-199 25-165 (249)
301 PRK09435 membrane ATPase/prote 99.1 1.2E-09 2.6E-14 107.5 13.2 107 120-245 146-253 (332)
302 KOG0079 GTP-binding protein H- 99.1 5.9E-10 1.3E-14 93.3 9.2 148 47-244 10-161 (198)
303 PF03029 ATP_bind_1: Conserved 99.1 9E-11 1.9E-15 110.9 4.4 113 123-243 91-228 (238)
304 COG4917 EutP Ethanolamine util 99.1 5E-10 1.1E-14 91.4 8.0 132 46-243 2-137 (148)
305 KOG0091 GTPase Rab39, small G 99.1 3.9E-10 8.4E-15 96.1 7.3 146 46-244 9-165 (213)
306 cd01899 Ygr210 Ygr210 subfamil 99.1 3.1E-09 6.7E-14 104.5 14.6 36 123-158 69-111 (318)
307 KOG0395 Ras-related GTPase [Ge 99.0 1.8E-09 3.8E-14 99.0 10.3 152 44-244 2-157 (196)
308 PRK13768 GTPase; Provisional 99.0 1.8E-09 3.9E-14 103.3 10.9 109 122-243 96-238 (253)
309 KOG0071 GTP-binding ADP-ribosy 99.0 7.4E-09 1.6E-13 86.1 12.7 150 43-242 15-168 (180)
310 TIGR00073 hypB hydrogenase acc 99.0 9.8E-10 2.1E-14 102.1 8.5 177 38-243 15-198 (207)
311 COG5192 BMS1 GTP-binding prote 99.0 7.6E-09 1.6E-13 104.0 13.9 145 43-237 67-211 (1077)
312 PF05049 IIGP: Interferon-indu 98.9 3.7E-09 8.1E-14 104.8 9.8 151 42-236 32-200 (376)
313 KOG0081 GTPase Rab27, small G 98.9 8.5E-10 1.8E-14 93.5 3.8 105 123-245 67-174 (219)
314 KOG0077 Vesicle coat complex C 98.9 1.5E-08 3.3E-13 86.9 10.6 157 43-242 18-183 (193)
315 TIGR02836 spore_IV_A stage IV 98.9 2.9E-08 6.4E-13 98.1 14.0 140 37-195 9-192 (492)
316 PF03144 GTP_EFTU_D2: Elongati 98.9 8.7E-09 1.9E-13 78.9 8.3 68 287-354 1-74 (74)
317 TIGR00750 lao LAO/AO transport 98.9 1.8E-08 3.9E-13 99.0 12.7 103 120-245 124-231 (300)
318 KOG0072 GTP-binding ADP-ribosy 98.9 3.9E-09 8.3E-14 88.2 6.0 151 44-243 17-170 (182)
319 PRK10463 hydrogenase nickel in 98.9 6E-10 1.3E-14 106.8 1.1 172 33-243 92-280 (290)
320 KOG0074 GTP-binding ADP-ribosy 98.8 1.3E-08 2.9E-13 84.7 8.0 152 42-243 14-170 (185)
321 PF04548 AIG1: AIG1 family; I 98.8 4.9E-08 1.1E-12 91.0 12.7 147 46-235 1-163 (212)
322 PRK09602 translation-associate 98.8 7.8E-08 1.7E-12 97.5 15.0 35 123-157 72-113 (396)
323 TIGR00991 3a0901s02IAP34 GTP-b 98.8 6.5E-08 1.4E-12 93.6 13.6 120 42-197 35-167 (313)
324 KOG3886 GTP-binding protein [S 98.8 1.2E-08 2.5E-13 92.4 7.5 154 45-237 4-164 (295)
325 smart00053 DYNc Dynamin, GTPas 98.8 1.5E-08 3.2E-13 95.4 8.6 67 123-197 125-206 (240)
326 cd01342 Translation_Factor_II_ 98.8 5.1E-08 1.1E-12 75.5 10.3 78 275-354 1-82 (83)
327 PF00350 Dynamin_N: Dynamin fa 98.8 1E-08 2.3E-13 91.7 7.1 66 121-193 99-168 (168)
328 TIGR00101 ureG urease accessor 98.8 3.8E-08 8.2E-13 90.6 10.8 95 122-243 91-187 (199)
329 KOG0083 GTPase Rab26/Rab37, sm 98.8 1.1E-09 2.4E-14 90.0 0.3 102 122-243 46-151 (192)
330 PTZ00258 GTP-binding protein; 98.8 9.7E-08 2.1E-12 95.9 14.1 84 43-157 19-126 (390)
331 COG0378 HypB Ni2+-binding GTPa 98.7 3.8E-08 8.3E-13 87.6 8.8 94 123-243 97-192 (202)
332 PF14578 GTP_EFTU_D4: Elongati 98.7 2.1E-07 4.6E-12 71.1 11.0 75 273-353 3-79 (81)
333 PF03308 ArgK: ArgK protein; 98.7 1.8E-07 3.9E-12 87.4 12.8 169 43-244 27-222 (266)
334 KOG0410 Predicted GTP binding 98.7 1.8E-08 3.8E-13 95.6 5.7 149 36-243 169-332 (410)
335 PF00735 Septin: Septin; Inte 98.7 3.2E-07 7E-12 88.8 13.7 143 45-222 4-177 (281)
336 KOG2486 Predicted GTPase [Gene 98.6 1.6E-07 3.6E-12 87.5 9.3 164 38-243 129-307 (320)
337 KOG1486 GTP-binding protein DR 98.6 8.1E-07 1.7E-11 81.6 11.9 88 42-160 59-153 (364)
338 cd04092 mtEFG2_II_like mtEFG2_ 98.6 5.9E-07 1.3E-11 70.4 9.6 75 277-355 3-83 (83)
339 KOG0393 Ras-related small GTPa 98.5 5.6E-07 1.2E-11 81.2 10.2 156 44-244 3-171 (198)
340 KOG4252 GTP-binding protein [S 98.5 1.5E-08 3.3E-13 87.7 0.2 154 43-244 18-173 (246)
341 cd03690 Tet_II Tet_II: This su 98.5 5.6E-07 1.2E-11 70.8 9.0 77 273-354 2-84 (85)
342 COG1703 ArgK Putative periplas 98.5 5.3E-07 1.1E-11 85.4 10.1 103 120-244 141-246 (323)
343 cd04088 EFG_mtEFG_II EFG_mtEFG 98.5 8.8E-07 1.9E-11 69.4 9.7 74 277-354 3-82 (83)
344 KOG1673 Ras GTPases [General f 98.5 9.4E-07 2E-11 75.0 9.3 158 41-244 16-178 (205)
345 TIGR00993 3a0901s04IAP86 chlor 98.5 1.5E-06 3.2E-11 91.1 12.4 117 45-197 118-250 (763)
346 cd03699 lepA_II lepA_II: This 98.5 1.9E-06 4.2E-11 68.0 10.4 79 276-355 2-86 (86)
347 cd03691 BipA_TypA_II BipA_TypA 98.5 2E-06 4.3E-11 67.9 10.3 76 275-354 1-85 (86)
348 KOG1490 GTP-binding protein CR 98.4 7.5E-07 1.6E-11 89.3 9.2 152 43-243 166-332 (620)
349 cd01900 YchF YchF subfamily. 98.4 4.2E-07 9.1E-12 87.4 7.2 80 48-158 1-104 (274)
350 KOG0448 Mitofusin 1 GTPase, in 98.4 3.1E-06 6.6E-11 88.0 13.3 101 124-236 207-310 (749)
351 cd04091 mtEFG1_II_like mtEFG1_ 98.4 2.9E-06 6.2E-11 66.2 9.8 64 286-354 13-80 (81)
352 PRK09601 GTP-binding protein Y 98.4 1.1E-06 2.5E-11 87.2 9.1 82 46-158 3-108 (364)
353 COG5019 CDC3 Septin family pro 98.4 8E-06 1.7E-10 79.6 14.1 144 44-221 22-196 (373)
354 cd03689 RF3_II RF3_II: this su 98.3 2.4E-06 5.2E-11 67.2 8.3 67 285-355 14-84 (85)
355 KOG1707 Predicted Ras related/ 98.3 1.5E-06 3.3E-11 88.8 8.4 154 41-244 5-167 (625)
356 KOG3883 Ras family small GTPas 98.3 2.3E-05 5E-10 66.6 13.5 148 45-243 9-166 (198)
357 KOG1547 Septin CDC10 and relat 98.3 1.6E-05 3.5E-10 72.7 12.4 143 45-222 46-219 (336)
358 PRK10416 signal recognition pa 98.3 5.9E-06 1.3E-10 81.5 10.5 94 121-243 195-301 (318)
359 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 4.9E-06 1.1E-10 73.3 8.6 148 43-243 8-160 (216)
360 PRK14974 cell division protein 98.2 7E-06 1.5E-10 81.3 10.7 94 121-243 221-321 (336)
361 TIGR00064 ftsY signal recognit 98.2 1E-05 2.2E-10 78.2 11.4 94 121-243 153-259 (272)
362 cd01859 MJ1464 MJ1464. This f 98.2 9.4E-06 2E-10 71.7 9.3 80 142-243 8-87 (156)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 1.2E-05 2.6E-10 69.7 9.4 80 138-239 3-84 (141)
364 TIGR01425 SRP54_euk signal rec 98.1 1.8E-05 3.8E-10 80.5 11.3 64 121-195 181-251 (429)
365 cd01851 GBP Guanylate-binding 98.1 4.4E-05 9.6E-10 71.7 13.3 92 42-158 4-103 (224)
366 cd01858 NGP_1 NGP-1. Autoanti 98.1 4.4E-06 9.6E-11 73.9 5.6 23 44-66 101-123 (157)
367 cd01855 YqeH YqeH. YqeH is an 98.1 1.5E-05 3.3E-10 72.8 9.3 93 136-243 24-116 (190)
368 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.7E-05 3.8E-10 70.1 8.8 83 140-243 2-86 (157)
369 smart00275 G_alpha G protein a 98.1 6.1E-05 1.3E-09 75.3 13.6 133 108-243 169-325 (342)
370 COG0012 Predicted GTPase, prob 98.1 8.7E-05 1.9E-09 73.0 13.8 22 45-66 2-23 (372)
371 cd03700 eEF2_snRNP_like_II EF2 98.0 4.4E-05 9.5E-10 61.2 9.9 66 285-354 14-92 (93)
372 cd01856 YlqF YlqF. Proteins o 98.0 1.6E-05 3.5E-10 71.4 8.2 90 130-243 2-92 (171)
373 cd04178 Nucleostemin_like Nucl 98.0 6.5E-06 1.4E-10 73.9 5.3 57 43-132 115-171 (172)
374 PF00448 SRP54: SRP54-type pro 98.0 1.2E-05 2.6E-10 73.8 7.1 66 121-196 82-153 (196)
375 KOG2655 Septin family protein 98.0 7E-05 1.5E-09 73.7 12.8 142 45-221 21-192 (366)
376 KOG1487 GTP-binding protein DR 98.0 1.1E-05 2.3E-10 74.7 6.5 85 45-160 59-150 (358)
377 KOG3905 Dynein light intermedi 98.0 0.00011 2.3E-09 70.3 12.4 56 180-242 220-280 (473)
378 cd03115 SRP The signal recogni 98.0 4.9E-05 1.1E-09 68.3 9.6 65 121-196 81-152 (173)
379 cd01849 YlqF_related_GTPase Yl 97.9 5.7E-05 1.2E-09 66.6 9.2 75 148-243 1-76 (155)
380 cd01849 YlqF_related_GTPase Yl 97.9 1.4E-05 2.9E-10 70.6 5.2 57 43-132 98-154 (155)
381 PRK14722 flhF flagellar biosyn 97.9 3.4E-05 7.3E-10 77.3 8.5 66 120-195 213-293 (374)
382 PF03193 DUF258: Protein of un 97.9 6.7E-06 1.5E-10 72.3 3.1 22 46-67 36-57 (161)
383 TIGR00157 ribosome small subun 97.9 3.3E-05 7.1E-10 73.6 7.8 83 142-243 32-114 (245)
384 PRK11889 flhF flagellar biosyn 97.9 1.9E-05 4.1E-10 78.7 6.3 65 122-196 320-390 (436)
385 PRK12289 GTPase RsgA; Reviewed 97.9 4.5E-05 9.9E-10 76.2 8.7 81 143-243 86-166 (352)
386 cd04090 eEF2_II_snRNP Loc2 eEF 97.9 0.00016 3.5E-09 58.0 10.1 65 278-344 4-84 (94)
387 cd03112 CobW_like The function 97.8 5.1E-05 1.1E-09 67.2 7.5 22 47-68 2-23 (158)
388 TIGR03596 GTPase_YlqF ribosome 97.8 4.3E-05 9.3E-10 74.2 7.1 89 131-243 5-94 (276)
389 cd03114 ArgK-like The function 97.8 2.3E-05 5E-10 68.6 4.6 59 121-194 90-148 (148)
390 cd01855 YqeH YqeH. YqeH is an 97.8 2.4E-05 5.1E-10 71.6 4.8 62 46-132 128-189 (190)
391 PRK00098 GTPase RsgA; Reviewed 97.7 0.00011 2.3E-09 72.2 8.6 81 144-243 78-158 (298)
392 KOG1954 Endocytosis/signaling 97.7 0.00016 3.5E-09 70.2 9.4 131 46-195 59-223 (532)
393 PRK00771 signal recognition pa 97.7 0.00037 7.9E-09 71.6 12.6 62 123-195 176-244 (437)
394 PF05783 DLIC: Dynein light in 97.7 0.00045 9.8E-09 71.4 13.2 55 181-242 195-254 (472)
395 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.5E-05 9.8E-10 66.1 4.9 20 47-66 85-104 (141)
396 PRK14721 flhF flagellar biosyn 97.7 0.00016 3.4E-09 73.7 8.9 67 120-196 267-339 (420)
397 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00013 2.8E-09 71.2 7.7 90 130-243 7-97 (287)
398 PRK12288 GTPase RsgA; Reviewed 97.6 5.8E-05 1.3E-09 75.4 4.8 21 47-67 207-227 (347)
399 KOG4423 GTP-binding protein-li 97.6 5.7E-06 1.2E-10 72.6 -2.1 154 45-243 25-185 (229)
400 COG3640 CooC CO dehydrogenase 97.6 0.00035 7.5E-09 64.3 9.3 65 121-195 132-197 (255)
401 PRK12724 flagellar biosynthesi 97.6 0.00036 7.7E-09 70.6 10.3 66 121-196 298-372 (432)
402 cd01856 YlqF YlqF. Proteins o 97.6 0.0001 2.2E-09 66.2 5.9 22 45-66 115-136 (171)
403 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00011 2.4E-09 71.8 6.5 58 43-133 119-176 (287)
404 TIGR03596 GTPase_YlqF ribosome 97.6 9.7E-05 2.1E-09 71.7 6.0 23 44-66 117-139 (276)
405 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00025 5.4E-09 69.3 8.8 80 144-243 76-155 (287)
406 COG1162 Predicted GTPases [Gen 97.6 7.5E-05 1.6E-09 71.7 4.9 20 47-66 166-185 (301)
407 TIGR03597 GTPase_YqeH ribosome 97.6 0.00029 6.3E-09 71.0 9.4 96 133-244 50-145 (360)
408 PRK12723 flagellar biosynthesi 97.6 0.00036 7.7E-09 70.6 9.4 66 121-196 253-325 (388)
409 COG1161 Predicted GTPases [Gen 97.6 8E-05 1.7E-09 73.8 4.7 57 43-132 130-186 (322)
410 PRK12727 flagellar biosynthesi 97.5 0.00043 9.3E-09 71.9 9.5 64 121-195 427-496 (559)
411 TIGR00487 IF-2 translation ini 97.5 0.0016 3.5E-08 69.6 14.1 179 128-355 392-576 (587)
412 cd02036 MinD Bacterial cell di 97.5 0.00078 1.7E-08 60.5 10.2 63 124-195 64-126 (179)
413 PRK10867 signal recognition pa 97.5 0.00033 7.2E-09 71.7 8.4 64 121-195 182-252 (433)
414 KOG1534 Putative transcription 97.5 0.00045 9.8E-09 62.3 8.1 65 123-196 98-177 (273)
415 PRK12726 flagellar biosynthesi 97.5 0.0004 8.8E-09 69.2 8.6 64 122-195 285-354 (407)
416 PRK12289 GTPase RsgA; Reviewed 97.5 0.00012 2.6E-09 73.1 4.9 21 47-67 174-194 (352)
417 PRK06731 flhF flagellar biosyn 97.5 0.00039 8.5E-09 66.8 8.1 65 122-196 154-224 (270)
418 PRK05703 flhF flagellar biosyn 97.5 0.00067 1.5E-08 69.7 10.2 65 121-195 298-369 (424)
419 KOG3887 Predicted small GTPase 97.5 0.00037 8E-09 64.0 7.2 153 46-235 28-186 (347)
420 TIGR00157 ribosome small subun 97.5 0.00017 3.6E-09 68.7 5.3 22 46-67 121-142 (245)
421 TIGR00959 ffh signal recogniti 97.5 0.00055 1.2E-08 70.1 9.4 64 121-195 181-251 (428)
422 TIGR03597 GTPase_YqeH ribosome 97.5 0.00016 3.5E-09 72.8 5.5 89 46-162 155-253 (360)
423 PRK01889 GTPase RsgA; Reviewed 97.4 0.00053 1.1E-08 69.0 9.0 79 144-243 110-188 (356)
424 KOG2485 Conserved ATP/GTP bind 97.4 0.00019 4.1E-09 68.6 5.4 66 42-132 140-205 (335)
425 CHL00189 infB translation init 97.4 0.0033 7.1E-08 68.6 15.6 179 128-355 549-732 (742)
426 PRK12288 GTPase RsgA; Reviewed 97.4 0.00067 1.4E-08 67.8 9.6 82 144-243 118-199 (347)
427 TIGR00092 GTP-binding protein 97.4 0.00043 9.2E-09 69.1 8.1 36 123-158 67-109 (368)
428 COG1419 FlhF Flagellar GTP-bin 97.4 0.00032 7E-09 70.0 7.2 127 43-196 201-351 (407)
429 PRK06995 flhF flagellar biosyn 97.4 0.0012 2.6E-08 68.4 11.7 67 119-195 331-403 (484)
430 PRK05306 infB translation init 97.4 0.0036 7.9E-08 68.8 15.9 179 128-355 594-778 (787)
431 PRK13796 GTPase YqeH; Provisio 97.4 0.00016 3.6E-09 72.9 5.1 60 46-133 161-220 (365)
432 cd02038 FleN-like FleN is a me 97.4 0.0012 2.7E-08 57.0 9.7 64 123-195 45-109 (139)
433 PF00503 G-alpha: G-protein al 97.4 0.0018 4E-08 66.1 12.4 85 108-195 220-315 (389)
434 PRK11537 putative GTP-binding 97.4 0.0027 5.8E-08 62.8 12.6 25 44-68 3-27 (318)
435 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00029 6.4E-09 68.7 5.5 22 46-67 162-183 (287)
436 PRK13796 GTPase YqeH; Provisio 97.3 0.0012 2.7E-08 66.6 9.8 93 135-244 58-151 (365)
437 COG0541 Ffh Signal recognition 97.3 0.0019 4.1E-08 64.8 10.1 141 37-195 92-251 (451)
438 COG0552 FtsY Signal recognitio 97.2 0.0038 8.2E-08 60.8 11.8 27 42-68 136-162 (340)
439 KOG0082 G-protein alpha subuni 97.2 0.0027 5.7E-08 62.7 10.9 87 106-195 178-274 (354)
440 COG0532 InfB Translation initi 97.2 0.0089 1.9E-07 61.5 14.8 75 278-354 417-496 (509)
441 PRK14723 flhF flagellar biosyn 97.2 0.0009 2E-08 72.6 7.8 66 121-196 262-336 (767)
442 cd02037 MRP-like MRP (Multiple 97.2 0.00087 1.9E-08 59.9 6.5 66 121-195 66-133 (169)
443 PF02492 cobW: CobW/HypB/UreG, 97.2 0.0015 3.3E-08 59.0 8.1 65 123-196 85-154 (178)
444 cd01859 MJ1464 MJ1464. This f 97.2 0.00082 1.8E-08 59.2 6.1 23 44-66 100-122 (156)
445 COG1162 Predicted GTPases [Gen 97.2 0.0017 3.7E-08 62.6 8.6 81 145-243 78-158 (301)
446 cd03111 CpaE_like This protein 97.2 0.0029 6.2E-08 51.9 8.8 60 124-192 44-106 (106)
447 cd03110 Fer4_NifH_child This p 97.1 0.0025 5.5E-08 57.4 9.0 65 121-195 91-155 (179)
448 KOG1491 Predicted GTP-binding 97.1 0.0011 2.3E-08 64.2 6.7 84 44-158 19-126 (391)
449 cd03702 IF2_mtIF2_II This fami 97.0 0.0036 7.8E-08 50.1 7.9 72 278-354 4-78 (95)
450 PRK00098 GTPase RsgA; Reviewed 97.0 0.00092 2E-08 65.6 5.0 21 46-66 165-185 (298)
451 KOG1533 Predicted GTPase [Gene 97.0 0.0021 4.5E-08 59.1 6.6 75 121-196 95-176 (290)
452 KOG0780 Signal recognition par 96.9 0.0038 8.1E-08 61.5 8.7 66 118-195 179-252 (483)
453 PF09547 Spore_IV_A: Stage IV 96.9 0.033 7.1E-07 56.0 15.2 32 37-68 9-40 (492)
454 PRK08099 bifunctional DNA-bind 96.9 0.0049 1.1E-07 62.9 9.8 30 43-72 217-246 (399)
455 KOG4181 Uncharacterized conser 96.9 0.017 3.6E-07 56.1 12.3 70 138-218 290-375 (491)
456 TIGR02475 CobW cobalamin biosy 96.9 0.011 2.5E-07 59.0 11.9 24 45-68 4-27 (341)
457 KOG0447 Dynamin-like GTP bindi 96.9 0.0041 8.9E-08 63.5 8.5 87 106-198 392-494 (980)
458 cd00066 G-alpha G protein alph 96.9 0.0025 5.4E-08 63.1 7.0 85 108-195 146-240 (317)
459 cd03701 IF2_IF5B_II IF2_IF5B_I 96.8 0.0087 1.9E-07 47.9 8.4 57 278-336 4-63 (95)
460 COG0523 Putative GTPases (G3E 96.7 0.0058 1.3E-07 60.3 8.2 92 123-234 85-184 (323)
461 cd02042 ParA ParA and ParB of 96.7 0.0079 1.7E-07 48.9 7.4 36 123-160 40-75 (104)
462 TIGR00491 aIF-2 translation in 96.6 0.052 1.1E-06 58.2 14.7 74 281-355 473-549 (590)
463 cd03703 aeIF5B_II aeIF5B_II: T 96.6 0.02 4.3E-07 46.8 8.9 75 278-354 4-93 (110)
464 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.023 5E-07 44.8 9.0 37 124-160 35-72 (99)
465 PF06858 NOG1: Nucleolar GTP-b 96.4 0.009 1.9E-07 42.5 5.1 48 139-194 5-58 (58)
466 TIGR03348 VI_IcmF type VI secr 96.3 0.0071 1.5E-07 70.2 7.2 19 46-64 112-130 (1169)
467 PRK10751 molybdopterin-guanine 96.2 0.014 2.9E-07 52.3 6.7 25 43-67 4-28 (173)
468 KOG2484 GTPase [General functi 96.1 0.0044 9.4E-08 61.3 3.2 58 43-133 250-307 (435)
469 PRK13695 putative NTPase; Prov 96.0 0.022 4.7E-07 51.1 6.9 21 47-67 2-22 (174)
470 cd04178 Nucleostemin_like Nucl 95.9 0.022 4.7E-07 51.1 6.8 41 148-196 1-43 (172)
471 KOG1707 Predicted Ras related/ 95.8 0.058 1.3E-06 56.0 10.1 146 36-235 416-567 (625)
472 PRK04004 translation initiatio 95.8 0.2 4.3E-06 53.9 14.7 74 281-355 475-551 (586)
473 KOG2423 Nucleolar GTPase [Gene 95.8 0.0033 7.1E-08 61.9 0.9 33 34-66 296-328 (572)
474 PF13555 AAA_29: P-loop contai 95.8 0.01 2.2E-07 43.2 3.1 21 47-67 25-45 (62)
475 KOG1424 Predicted GTP-binding 95.7 0.0093 2E-07 60.9 3.6 27 40-66 309-335 (562)
476 PF13207 AAA_17: AAA domain; P 95.6 0.013 2.9E-07 48.8 3.8 24 47-70 1-24 (121)
477 PF00437 T2SE: Type II/IV secr 95.3 0.022 4.8E-07 55.0 4.8 24 44-67 126-149 (270)
478 PRK14845 translation initiatio 95.3 0.33 7.2E-06 55.2 14.5 75 281-355 931-1007(1049)
479 cd03238 ABC_UvrA The excision 95.1 0.017 3.8E-07 51.9 3.1 25 44-68 20-44 (176)
480 COG4148 ModC ABC-type molybdat 95.1 0.27 5.9E-06 46.9 10.9 49 176-234 138-187 (352)
481 PRK07261 topology modulation p 95.0 0.023 5E-07 50.9 3.6 21 47-67 2-22 (171)
482 PF03205 MobB: Molybdopterin g 95.0 0.026 5.6E-07 48.8 3.6 22 46-67 1-22 (140)
483 COG1126 GlnQ ABC-type polar am 95.0 0.019 4.1E-07 52.6 2.8 21 45-65 28-48 (240)
484 COG0563 Adk Adenylate kinase a 95.0 0.025 5.3E-07 51.0 3.6 25 47-71 2-26 (178)
485 PRK08118 topology modulation p 94.9 0.025 5.5E-07 50.4 3.6 25 46-70 2-26 (167)
486 COG1136 SalX ABC-type antimicr 94.9 0.018 3.8E-07 53.6 2.6 20 46-65 32-51 (226)
487 PRK01889 GTPase RsgA; Reviewed 94.9 0.018 3.8E-07 58.0 2.7 22 46-67 196-217 (356)
488 PF09173 eIF2_C: Initiation fa 94.8 0.38 8.2E-06 37.7 9.4 60 379-466 25-88 (88)
489 COG1116 TauB ABC-type nitrate/ 94.8 0.019 4.1E-07 53.8 2.6 19 47-65 31-49 (248)
490 PF13671 AAA_33: AAA domain; P 94.8 0.027 5.8E-07 48.4 3.4 23 48-70 2-24 (143)
491 cd02019 NK Nucleoside/nucleoti 94.8 0.024 5.3E-07 42.4 2.7 19 48-66 2-20 (69)
492 COG1341 Predicted GTPase or GT 94.8 0.039 8.6E-07 55.1 4.8 27 42-68 70-96 (398)
493 KOG3859 Septins (P-loop GTPase 94.8 0.17 3.8E-06 47.9 8.6 136 44-221 41-210 (406)
494 PRK13833 conjugal transfer pro 94.7 0.087 1.9E-06 52.1 7.0 23 45-67 144-166 (323)
495 cd03116 MobB Molybdenum is an 94.7 0.13 2.9E-06 45.4 7.5 22 46-67 2-23 (159)
496 smart00010 small_GTPase Small 94.5 0.068 1.5E-06 44.3 5.2 19 47-65 2-20 (124)
497 TIGR00235 udk uridine kinase. 94.5 0.04 8.6E-07 51.0 3.9 27 43-69 4-30 (207)
498 KOG2743 Cobalamin synthesis pr 94.5 0.8 1.7E-05 44.1 12.3 26 41-66 53-78 (391)
499 KOG0781 Signal recognition par 94.4 0.069 1.5E-06 54.2 5.6 142 42-195 375-542 (587)
500 KOG2484 GTPase [General functi 94.4 0.068 1.5E-06 53.1 5.4 67 125-197 124-191 (435)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-101 Score=740.97 Aligned_cols=424 Identities=45% Similarity=0.797 Sum_probs=410.6
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..|+++|++++||||||||||+|+|||++|.++.+.|+++++++.+.|++||+++|+||.+++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+.+.|+++|||||+||.++|++|+++||+|||||||..+.||+||..++||+||+.+++.+|+.++||++||||+ ++|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 779
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
++++|+++++++..+++.+||++. +++|||+||++|+|+.+..+ .+|||+||||++.|+.+..|.+..++|||++|+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999853 79999999999999999874 699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCC
Q 011837 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 281 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 358 (476)
++| .+.|++..|||++|.|++||+|++.|++...+|+||++++++++.|.|||+|+++++++...||++|++++++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011837 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
|+..+..|.|++.+++. +.+|.+||++++|+|+..++|++.+|..++|+.+|+..+++|.++++|+.+.|.+++.+|+
T Consensus 318 ~~t~s~~f~a~i~vl~~--p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 318 PPTVSPEFTAQIIVLWH--PGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred CcccccceEEEEEEEec--CccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCce
Confidence 99998999999999542 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 439 ~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
|++++++++.||||+|||+|+|||+|+|.++.+
T Consensus 396 ~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 396 CLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred EeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 999999999999999999999999999998753
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=8.8e-89 Score=695.91 Aligned_cols=429 Identities=36% Similarity=0.655 Sum_probs=405.0
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+|+++||+++||+|||||||+++||+.+|.++.+.+.++++++.+.|+.++.|+|++|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 46889999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+++.++|+|||||++|+++|+.+++.+|++||||||..|.+|+++++.+||++|+.++..+|+|++||++||||+...+|
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999999999988899999999999999998999999999965578
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
++++|+++.++++.+++..||+. .+++|+|+||++|+|+.+.+.. ++||+|++|++.|+.++.|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccccccC--CcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 89999999999999999999873 3689999999999999886554 89999999999999998888888999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecC-C
Q 011837 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV-A 357 (476)
Q Consensus 281 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~-~ 357 (476)
++| ++.|++++|+|.+|.|++||.|.++|++..++|++|++++.++++|.|||+|+++|++++..+++||+||+++ +
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~ 319 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKD 319 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCC
Confidence 999 5789999999999999999999999999999999999999999999999999999999998999999999997 4
Q ss_pred CCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011837 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
.|+..+++|+|+|.||+. ..++..||++++|||+.+++|+|.+|.+++|.++|+..+++|++|++|+.|.|+|++++|
T Consensus 320 ~p~~~~~~F~A~i~~l~~--~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 320 DPAKEAANFTSQVIIMNH--PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred CCCccccEEEEEEEEECC--CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 677889999999999642 378999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeecccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 011837 438 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 438 i~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~~ 474 (476)
+|+|+|++|+.+|||+|||+|.|+|+|+|+++...++
T Consensus 398 i~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 9999999999999999999999999999999887544
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=7.1e-87 Score=682.47 Aligned_cols=429 Identities=38% Similarity=0.707 Sum_probs=405.1
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++||+.+|.+++++++++++++.+.|++++.|+|++|..++|+++|+|++.+...|++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+++.++|+|||||.+|.++|+++++.+|++||||||..|+||++|+..+||++|+.++..+|+|++||++||||++.++|
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999999999987799999999999999999999999999766889
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
++++|+++++++..+++.+|++. .++++||+||++|+|+.+... .++||+|++|++.|+.++.|.+..++|+||+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 99999999999999999999863 368999999999999987654 489999999999999998888888999999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCC-
Q 011837 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 357 (476)
Q Consensus 281 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~- 357 (476)
++| ++.|++++|+|.+|+|++||.|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~ 319 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKN 319 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCC
Confidence 999 57899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011837 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
.|+..+++|+|+|.||+. ..+|.+||++++||++.+++|+|..|.+++|+++++..+++|++|++|+.+.|+|++++|
T Consensus 320 ~p~~~~~~f~a~i~~l~~--~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 397 (446)
T PTZ00141 320 DPAKECADFTAQVIVLNH--PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKP 397 (446)
T ss_pred CCCccceEEEEEEEEECC--CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCc
Confidence 566778999999999652 268999999999999999999999999999999998888899999999999999999999
Q ss_pred EEeecccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 011837 438 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 438 i~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~~ 474 (476)
+|+|+|++|+.+|||+||+.|+|+|+|+|+++...+-
T Consensus 398 i~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~ 434 (446)
T PTZ00141 398 MCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEG 434 (446)
T ss_pred eEEeecccCCCCccEEEEECCCEEEEEEEEEEecCCC
Confidence 9999999999999999999999999999999886543
No 4
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-87 Score=632.85 Aligned_cols=428 Identities=61% Similarity=0.995 Sum_probs=415.2
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...+.+.|+.++||+|+||||+-+.+++.+|.++.+++++|.+++.+.+|+|++.+|.||+..+||+.|-|+..+..+|+
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+..++|+++|+|||..|.++|+.|+++||.++||++|..|.||++|+.++||+||..+++.+|+.++|+++||||-+.++
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
|++++|+++++.+..+|+.+||++..+..++|+|+++|.|+.+..+ ..||||.|+++++.|+.++...+..++|++++|
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCPV 312 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEeeh
Confidence 9999999999999999999999988899999999999999999877 689999999999999999988999999999999
Q ss_pred EEEEccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 280 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 280 ~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
.+.|++.|+++.|+|+||+++.||.+.++|.+..+.|.+|......++.+.||+++-|.|+|+...+|..|.|||+++++
T Consensus 313 ~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 313 ANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred hhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 360 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
..+.+.|.|+|.+++. +..|.+||.+++|+|+....|.| ++++.+|++||.+.++.|+|++.|+.+.++++...|||
T Consensus 393 ~~s~~~F~aqi~IlE~--~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~iC 469 (501)
T KOG0459|consen 393 CKSGRTFDAQIVILEH--KSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPIC 469 (501)
T ss_pred cccccEEEEEEEEEec--CceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcEe
Confidence 9999999999999542 26899999999999999999999 78899999999999999999999999999999999999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
+|+|.++|.+|||.|||+|+|||+|+|+++.+
T Consensus 470 le~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 470 LETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred hhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999999999999999999999999853
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-86 Score=656.10 Aligned_cols=430 Identities=37% Similarity=0.689 Sum_probs=411.0
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
-+.+...+.+++++++||+|+|||||+|+|||..|.++.+.|.++++++...|+.||.|+|++|.+.+||+||+|++.+.
T Consensus 168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~ 247 (603)
T KOG0458|consen 168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKT 247 (603)
T ss_pred cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeee
Confidence 35556667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 116 AHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
..|+...+.++|+|+|||.+|+++|++|+.+||+++|||||+.|.||+||+..+||+||+.+++.+|+.++||+|||||+
T Consensus 248 ~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 248 TWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL 327 (603)
T ss_pred EEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccHHHHHHHHHHHHHHH-HhccCCcCCCeeEEeeecccccccccc-cccCCCCCCCcchHHHHhhccCCCCCCCCC
Q 011837 196 HTVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTR-VDKSLCPWWNGPCLFEALDRIEITPRDPNG 273 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~ipvSa~~g~~i~~~-~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~ 273 (476)
++|+++||+++++.+..|| +.+||. ..++.|||||+++|+|+... .++.+..||+||||++.|+.+..|.+..++
T Consensus 328 --V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~k 404 (603)
T KOG0458|consen 328 --VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDK 404 (603)
T ss_pred --cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccC
Confidence 9999999999999999999 889998 46789999999999999987 444678999999999999999888888999
Q ss_pred CeEEEEEEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 274 PFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 274 p~~~~v~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
||++.|.++++ +.|..++|+|++|.|++||+|+++|+...+.|++|.+++++...|.|||.|.+.|.++....+..|+
T Consensus 405 Pl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~ 484 (603)
T KOG0458|consen 405 PLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGD 484 (603)
T ss_pred CeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccce
Confidence 99999999995 5677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe-cCCCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEE
Q 011837 352 VLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 430 (476)
Q Consensus 352 vl~-~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v 430 (476)
+++ .+..|.+.+..|.+++.||+. +.|+..|.+..+|.|+..++|++.++...+++.+|+..++.|++|..|+.|.+
T Consensus 485 i~~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~v 562 (603)
T KOG0458|consen 485 IADSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIV 562 (603)
T ss_pred eeecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeee
Confidence 999 778888889999999999873 46788999999999999999999999999999999999999999999999999
Q ss_pred EEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 431 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 431 ~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
+++...|||+|+|.+|+++|||++|..|+|+|+|+|++|.
T Consensus 563 ele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 563 ELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred eccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 9999999999999999999999999999999999999974
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.5e-81 Score=645.67 Aligned_cols=418 Identities=38% Similarity=0.704 Sum_probs=393.1
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+|+++||+++||+|||||||+++|++..|.++++.++++++++.+.|+.++.++|++|..++|+++|+|++.....|++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCC--CccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~--g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
+++.++|||||||++|.++++.+++.+|++|||||+++ +. ..|+++|+.++..++++++||++||||+ .
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~ 152 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--V 152 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--c
Confidence 99999999999999999999999999999999999998 55 3799999999999998779999999999 5
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
+|++++++++.+++..+++.+++.. ..++++|+||++|.|+.++.+. ++||+|++|+++|+.++.|.+..++||||+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~~--~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~ 229 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSEN--MPWYNGPTLLEALDNLKPPEKPTDKPLRIP 229 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCccccccC--CCcccHHHHHHHHhcCCCCccccCCCcEEE
Confidence 5677888899999999999888752 2578999999999999998764 899999999999999998888889999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecC
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
|+++| ++.|++++|+|.+|+|++||.|.++|++..++|++|+.++.+++.|.|||+|+++|++++..++++|++|+++
T Consensus 230 i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 230 IQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred EEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999 6889999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011837 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+.+++.+++|+|++.||+. ..++++||++++|+++.+++|+|.+|.+.+|+++++..+++|++|++|+.|.|+|+|++
T Consensus 310 ~~~~~~~~~f~a~v~~l~~--~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~ 387 (425)
T PRK12317 310 DNPPTVAEEFTAQIVVLQH--PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTK 387 (425)
T ss_pred CCCCCcccEEEEEEEEECC--CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECC
Confidence 8888889999999999542 26899999999999999999999999999999999888889999999999999999999
Q ss_pred eEEeecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 437 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 437 pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
|+|+++|++|+.+|||+||++|+|+|+|+|+++.++
T Consensus 388 p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 388 PLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred eeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 999999999999999999999999999999998865
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.3e-80 Score=638.52 Aligned_cols=421 Identities=38% Similarity=0.693 Sum_probs=394.0
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++.+|.++++.+.++++++.+.|+.++.|+|++|..++|+++|+|++.....|.+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++..++|||||||++|.++++.+++.+|++|||||++++.++ ...|+++|+.++..++++++||++||+|+ .+|
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~ 156 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNY 156 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCc
Confidence 999999999999999999999999999999999999998542 23789999999999998889999999999 667
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
++++++++.+++..+++..++.. ..++++|+||++|.|+.+.... +|||+|++|++.|+.+++|.+..++||||+|+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~ 233 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQ 233 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCc-ccceEEEeeccccccccccccC--CccccchHHHHHHhcCCCCCCccCCCcEEEEE
Confidence 78889999999999999988752 3579999999999999997654 89999999999999998888888899999999
Q ss_pred EEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCC
Q 011837 281 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 281 ~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 358 (476)
++| ++.|+|++|+|.+|+|++||.|.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++|++++.
T Consensus 234 ~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 234 DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999 688999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011837 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
+++.+++|+|++.||+. ..++..||++++|+|+.+++|+|..|.+++|+++++..+++|++|++|+.|.|+|+|++|+
T Consensus 314 ~~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 391 (426)
T TIGR00483 314 PPKVAKEFTAQIVVLQH--PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM 391 (426)
T ss_pred CCceeeEEEEEEEEECC--CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCee
Confidence 88889999999999542 2689999999999999999999999999999999988889999999999999999999999
Q ss_pred EeecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 439 ~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
|+|+|++|+.+|||+||++|+|+|+|+|+++.++
T Consensus 392 ~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 392 VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999999988653
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-80 Score=578.96 Aligned_cols=409 Identities=31% Similarity=0.498 Sum_probs=381.7
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcC--ccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..+..+++..+|+||.|||||+|+|||++..+.+.++..+++.+...| ...+.++.++|....||++|||||+++.+|
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 356779999999999999999999999999999999999988876444 466899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
.+++++|.+.|||||+.|.+||.+|++.||++|++|||..|+. .||++|..++..||++|+||+|||||| +
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--v 152 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--V 152 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--c
Confidence 9999999999999999999999999999999999999999996 599999999999999999999999999 9
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
+|++++|+++..++..|.+.+|+. ...+||+||+.|+|+...++ .||||+||+|++.|+.+........+|||||
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfP 227 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFP 227 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeec
Confidence 999999999999999999999987 56999999999999998765 4999999999999999988777788899999
Q ss_pred EEEEEccC--CeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecC
Q 011837 279 IIDKFKDM--GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 v~~~~~~~--G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
|+.+.+.. =+-+.|+|.+|++++||.|.++|+++..+|++|..+..++++|.+|+.|+|.|. +..+++||++|+.+
T Consensus 228 VQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~ 305 (431)
T COG2895 228 VQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAA 305 (431)
T ss_pred eEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEcc
Confidence 99998422 122899999999999999999999999999999999999999999999999998 88899999999999
Q ss_pred CCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011837 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+.+|..++.|.|.++| +.+.++.+|..|.+.+++..+.++|..|.+++|.++.+.. .++.|..|+.+.|++.++.
T Consensus 306 ~~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~ 380 (431)
T COG2895 306 DAPPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDK 380 (431)
T ss_pred CCCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCC
Confidence 9999999999999999 5567899999999999999999999999999999998754 7788999999999999999
Q ss_pred eEEeecccCccccceEEEEeC--CcEEEEEEEEEcC
Q 011837 437 SICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELP 470 (476)
Q Consensus 437 pi~~e~~~~~~~lgrfilr~~--~~tva~G~V~~v~ 470 (476)
|+++++|.+|+.+|+|||+|. |.|+|+|+|.+-.
T Consensus 381 pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 381 PIAFDAYAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred ceeecccccCcccccEEEEEcCCCCceeceeeechh
Confidence 999999999999999999996 7899999998744
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=4.2e-77 Score=614.82 Aligned_cols=410 Identities=28% Similarity=0.443 Sum_probs=376.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCcc--chhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..++.++|+++||+|||||||+++||+.+|.++.+.+.++++++.+.|++ ++.++|++|..++|++||+|++.+...|
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35778999999999999999999999999999999999999999999985 7999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
++++++++|+|||||++|.++|..++..+|++||||||..|.. .||++|+.++..++++++||++||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999975 699999999999999889999999999 6
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
+|++++++++++++..+++.+++. ...+++|+||++|+|+.++.. .+|||+|++|+++|+.++.|.+..+.|+||+
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 677888999999999888887742 257899999999999998754 4899999999999999988888888999999
Q ss_pred EEEEEcc--CCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecC
Q 011837 279 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 v~~~~~~--~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
|+++++. ....+.|+|.+|+|++||+|.++|++..++|++|+.++.+++.|.|||+|+|+|++ ..++++|++|+++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9999742 11237899999999999999999999999999999999999999999999999985 5679999999999
Q ss_pred CCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011837 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+.++..+++|+|++.||+ ..+|.+||++.+|+|+.+++|+|..|.+++|++|++. .+|++|++|+.+.|+|++++
T Consensus 328 ~~~~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECC
Confidence 888888999999999954 4679999999999999999999999999999999874 46889999999999999999
Q ss_pred eEEeecccCccccceEEEE--eCCcEEEEEEEEEcC
Q 011837 437 SICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 470 (476)
Q Consensus 437 pi~~e~~~~~~~lgrfilr--~~~~tva~G~V~~v~ 470 (476)
|+|+|+|++|+.||||+|| ++++|+|+|+|+++.
T Consensus 403 pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 403 PLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999995 568999999999876
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=4.6e-77 Score=606.15 Aligned_cols=400 Identities=29% Similarity=0.496 Sum_probs=371.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCcc--chhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ||.|+|++|..++|++||+|++.+...|+++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
+++|+|||||++|.++|+.++..+|++||||||..|.. .||++|+.++..++++++||++||||+ .+|+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999975 799999999999999889999999999 667788
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEE
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~ 283 (476)
+++++++++..+++.+++. +++++|+||++|+|+.++.+ .++||+|++|.++|+.++.|.+..++|+|++|++++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8999999999999888874 57899999999999998765 489999999999999998888888899999999987
Q ss_pred c--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcc
Q 011837 284 K--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 361 (476)
Q Consensus 284 ~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~ 361 (476)
+ ..+.-+.|+|.+|+|++||+|.++|++..++|++|+.++.++++|.|||+|+++|++ ..++++|++|++++.+++
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 4 223347899999999999999999999999999999999999999999999999984 567999999999998888
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 441 (476)
.++.|+|++.|| .+.+|++||++.+|+|+.+++|+|..|.+++|++||+. .+|+++++|+.+.|+|++++|+|++
T Consensus 305 ~~~~f~a~i~~l---~~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~ 379 (406)
T TIGR02034 305 VADQFAATLVWM---AEEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFD 379 (406)
T ss_pred cceEEEEEEEEe---ChhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccC
Confidence 899999999995 45689999999999999999999999999999999874 4578999999999999999999999
Q ss_pred cccCccccceEEE--EeCCcEEEEEEE
Q 011837 442 KFADFAQLGRFTL--RTEGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfil--r~~~~tva~G~V 466 (476)
+|++++.||||+| |++|+|+|+|+|
T Consensus 380 ~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 380 PYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9999999999999 567999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=3.5e-73 Score=608.66 Aligned_cols=413 Identities=29% Similarity=0.464 Sum_probs=379.5
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..++.++|+++||+|||||||+++|++..|.++.+.+.++++++.+.|. .++.++|++|..++|+++|+|++.+...|
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4566789999999999999999999999999999999999999999997 78999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
++++.+++|+|||||++|.++|+.++..+|+++||||+..|.. .|+++|+.++..++++++||++||||+ +
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~--~ 170 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL--V 170 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc--c
Confidence 9999999999999999999999999999999999999999875 799999999999998889999999999 6
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
+|++++++++.+++..+++.+++. +++++|+||++|.|+.+.... +|||.|++|++.|+.++.+.+..++|+|++
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~~--~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~ 245 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSAR--MPWYEGPSLLEHLETVEIASDRNLKDFRFP 245 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCccccccC--CCcccHhHHHHHHhcCCCCCCcCCCCceee
Confidence 677888999999999999988884 578999999999999987653 899999999999999988777788999999
Q ss_pred EEEEEcc--CCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecC
Q 011837 279 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 279 v~~~~~~--~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
|.++++. .+..+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++ ..++++|++|+++
T Consensus 246 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~ 323 (632)
T PRK05506 246 VQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARA 323 (632)
T ss_pred EEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecC
Confidence 9999752 22337899999999999999999999999999999999999999999999999984 4679999999999
Q ss_pred CCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011837 357 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 357 ~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
+++++.++.|+|++.||+ +.++.+||++++|+|+.+++|+|..|.+++|+++++. ++|++|++|+.+.|+|++++
T Consensus 324 ~~~~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~ 398 (632)
T PRK05506 324 DNRPEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDA 398 (632)
T ss_pred CCCCcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECC
Confidence 988888999999999954 5567799999999999999999999999999998873 68999999999999999999
Q ss_pred eEEeecccCccccceEEEEe--CCcEEEEEEEEEcCCCCC
Q 011837 437 SICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 437 pi~~e~~~~~~~lgrfilr~--~~~tva~G~V~~v~~~~~ 474 (476)
|+|+++|++|+.||||+||| +|+|+|+|+|++..+...
T Consensus 399 pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~~~ 438 (632)
T PRK05506 399 PIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRRAT 438 (632)
T ss_pred EEeeeeccccccCceEEEEeccCCceEEEEEECccccccc
Confidence 99999999999999999965 799999999998776433
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4.2e-69 Score=552.47 Aligned_cols=389 Identities=28% Similarity=0.468 Sum_probs=341.3
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++..|.+..+...+ ...+|..++|+++|+|++.....|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 568899999999999999999999999888765432211 23689999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+++.++|||||||++|+++|+++++.+|+++|||||.+|.. +||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-------~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999974 799999999999999989999999999 43
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc---cccCCCCCCC-cchHHHHhhcc-CCCCCCCCCCe
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 275 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~---~~~~~~~w~~-g~~l~~~l~~i-~~~~~~~~~p~ 275 (476)
.++.++.+.+++..+++.+||+. .+++++|+||++|.|+... ......+||+ +++|++.|+.+ +.|.++.++||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~-~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPG-DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 35568888889999999999863 4789999999999877421 1112358997 57899888874 55777788999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC--ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 276 ~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
||+|+++| ++.|+|++|+|.+|.|++||.|.++|.+ ..++|++|+.++.++++|.|||+|+|+|++++..++++|+
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 6889999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEecCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEE
Q 011837 352 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 428 (476)
Q Consensus 352 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a 428 (476)
+|++++. +++++.|+|++.||+... +.+|.+||++.+|+|+.+++|+|..|....+ ++|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999874 556899999999976321 3589999999999999999999999865432 357889999999
Q ss_pred EEEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 429 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 429 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
.|+|++++|+|+++ ++||+||+.|+|+|+|+|+++.
T Consensus 442 ~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 442 KMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 99999999999987 5899999999999999999976
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.1e-67 Score=538.35 Aligned_cols=390 Identities=31% Similarity=0.474 Sum_probs=341.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++..|.++.+... .+ ..+|..++|+++|+|++.....|++
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--------------~~-~~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--------------KY-DEIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccc--------------cc-ccccCChhhhcCCEeEEccEEEEcc
Confidence 46888999999999999999999999988876543211 11 2589999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++++++|+|||||.+|++++++++..+|+++||||+..|.. +|+++|+.++..+|+|++|+++||||+ ++
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~- 142 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VD- 142 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CC-
Confidence 99999999999999999999999999999999999999874 799999999999999988899999999 43
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccccc---CCCCCCCc-chHHHHhhc-cCCCCCCCCCCe
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGPF 275 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~---~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~ 275 (476)
.++.++.+.+++..+|+.++++. ..++++|+||++|+|+.....+ ...+||++ ++|++.|+. ++.|.++.+.||
T Consensus 143 ~~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~ 221 (409)
T CHL00071 143 DEELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPF 221 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCE
Confidence 24567888889999999998863 3689999999999998754322 12589985 999998887 566777788999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 276 ~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
|++|+++| ++.|++++|+|.+|+|++||.|.+.|. +..++|++|+++++++++|.|||+|+|+|++++..++++|+
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 99999999 688999999999999999999998874 56789999999999999999999999999999889999999
Q ss_pred EEecCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEE
Q 011837 352 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 428 (476)
Q Consensus 352 vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a 428 (476)
+|++++. ++++++|+|++.+|+... ..+|.+||++.+|+|+.+++|+|..|... + .++|+++++|+.+
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 9999874 567899999999976421 35799999999999999999999988643 1 2568899999999
Q ss_pred EEEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 429 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 429 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
.|+|++++|+|++++ |||+||+.|+|+|+|+|+++.+
T Consensus 373 ~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 373 KMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 999999999999985 8999999999999999998763
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-67 Score=535.10 Aligned_cols=379 Identities=30% Similarity=0.439 Sum_probs=332.8
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+++++||+++||+|||||||+++|++..+ ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~ 72 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET 72 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEcC
Confidence 568889999999999999999999986432 23444444456799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++.+++|+|||||++|.++|++++..+|+++||||+.+|.. +|+++|+.++..+++|++||++||||+ .+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl--~~- 142 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999874 799999999999999977778999999 43
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc-chHHHHhhc-cCCCCCCCCCCeEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~~~~ 278 (476)
.++.++.+.+++..+++.+++.. .+++++|+||++|.|... .++||.+ ++|++.|+. +|.|.+..++|||++
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPG-DDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCc-CceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEE
Confidence 34567778889999999988752 358999999999999643 3789965 889998886 577778888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|+||+
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~ 296 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLA 296 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEE
Confidence 99999 688999999999999999999999997 47889999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011837 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++ ++++++.|+|++.+|+... +.+|..||++++|+|+.+++|+|.. .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK12735 297 KPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEEE
Confidence 987 4557899999999976321 3578999999999999999999842 2357789999999999
Q ss_pred EEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
|+|++|+|++++ |||+||++|+|+|+|+|+++.
T Consensus 363 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.6e-67 Score=531.13 Aligned_cols=379 Identities=31% Similarity=0.453 Sum_probs=331.1
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
+.++++||+++||+|||||||+++|++... +.|+......+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 568889999999999999999999986431 12222222333799999999999999999999998
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++++++|+|||||.+|.+++.+++..+|++++|||+.+|.. +|+++|+.++..+++|.+||++||||+ .+
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-------~qt~~~~~~~~~~g~p~iiVvvNK~D~--~~- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hHHHHHHHHHHHcCCCEEEEEEeecCC--cc-
Confidence 99999999999999999999999999999999999999874 799999999999999966679999999 43
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc-chHHHHhhc-cCCCCCCCCCCeEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~~~~ 278 (476)
.++.++.+.+++..+++.+++. ..+++++|+||++|.|-. ..++||++ ++|+++|+. ++.|.+..++||||+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~~-----~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGD-----DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCCC-----CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3456777888999999999885 246899999999998732 24899975 899999887 677777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||+|.++|. +..++|+||+++++++++|.|||+|+++|++++..++++|++|+
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 99999 588999999999999999999999987 68899999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011837 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++ ++++++.|+|++.+|+... +++|..||++++|+|+.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 987 4556799999999976311 368899999999999999999982 2 2357889999999999
Q ss_pred EEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
|++++|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-66 Score=527.71 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=329.1
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..|+++||+++||+|||||||+++|+...+ +.|+.++...+.+|..++|+++|+|++.....|++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 478899999999999999999999974321 23444544445799999999999999999999998
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+++.++|+|||||++|+++|+++++.+|+++||||+.+|.. +|+++|+.++..+|+|++||++||||+ ++
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~--~~- 142 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDL--VD- 142 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999874 799999999999999988899999999 42
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc-chHHHHhhc-cCCCCCCCCCCeEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~~~~ 278 (476)
+++.++.+.+++..+++.+++.. ..++++|+||++|.+- ..+||.+ ++|++.|+. +|.|.++.++|||++
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 34567777889999999998863 3579999999998642 2579964 788887775 677777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||.|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|++|+
T Consensus 215 I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 215 VEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 99999 688999999999999999999999998 67899999999999999999999999999999989999999999
Q ss_pred cCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011837 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++. ++++++|+|++.+|+... ++++..||++++|+|+.++.|+|.. .++|++|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T PRK12736 295 KPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTIT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 9874 456799999999975321 2578999999999999999999842 2356789999999999
Q ss_pred EEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 361 VELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 999999999985 799999999999999999875
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=5.7e-66 Score=524.08 Aligned_cols=377 Identities=30% Similarity=0.466 Sum_probs=328.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
++++++||+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 468899999999999999999999975421 23444554557899999999999999999999998
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++++++|||||||++|.++|+++++.+|+++||||+.+|.. .|+++|+..+..+++|++|+++||||+ .+
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~- 142 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CC-
Confidence 89999999999999999999999999999999999999874 799999999999999977789999999 43
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCC-cchHHHHhhc-cCCCCCCCCCCeEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~-g~~l~~~l~~-i~~~~~~~~~p~~~~ 278 (476)
.++.++.+.++++.+++.+++.. .+++++|+||++|.+- ..+||. +++|++.|+. ++.|.++.++|||++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 143 DEELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 24567777888999999988752 3589999999998642 257996 4888888876 466777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||.|.+.|. +..++|++|++++.++++|.|||+|+|+|++++..++++|++|+
T Consensus 215 V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 215 IEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 99999 688999999999999999999999984 57899999999999999999999999999999888999999999
Q ss_pred cCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011837 355 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++ +++++++|+|++.||+... +.+|..||++.+|+++.++.|+|.. .++|++|++|+.+.|+
T Consensus 295 ~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL-------------PEGVEMVMPGDNVKMT 360 (394)
T ss_pred cCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 986 4556799999999965311 3678999999999999999999863 1357889999999999
Q ss_pred EEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 432 ~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.6e-65 Score=522.35 Aligned_cols=379 Identities=28% Similarity=0.443 Sum_probs=325.0
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhh-hcCCchhhhccccEEeeeeE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY-IMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~-~~d~~~~e~~~g~ti~~~~~ 116 (476)
....+|+++||+++||+|||||||+++|+... .+.|+.. ..+| .+|..++|+++|+|++....
T Consensus 54 ~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~ 117 (447)
T PLN03127 54 TFTRTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHV 117 (447)
T ss_pred hhhcCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEE
Confidence 34457899999999999999999999995211 1223322 1222 68999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 117 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
.|++++++++|+|||||.+|+++|++++..+|+++||||+.+|.. +|+++|+.++..+|+|++|+++||||+
T Consensus 118 ~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl- 189 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV- 189 (447)
T ss_pred EEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc-
Confidence 999999999999999999999999999999999999999999874 799999999999999988899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc---cccccccccCCCCCCCcchHHHHhhc-cCCCCCCCC
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPN 272 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g---~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~~~~~~~ 272 (476)
++ .++.++.+.++++++++.++|+ ...+|++|+||+++ .|.. ..|+.+++|++.|+. +|.|.+..+
T Consensus 190 -v~-~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp~p~r~~~ 259 (447)
T PLN03127 190 -VD-DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIPEPVRVLD 259 (447)
T ss_pred -CC-HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCCCCCcccc
Confidence 43 3446666777888888888875 24689999998754 4422 346777889988876 577777888
Q ss_pred CCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC----CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccC
Q 011837 273 GPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED 346 (476)
Q Consensus 273 ~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~----~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~ 346 (476)
+||||+|+++| ++.|+|++|+|.+|.|++||.|.++|. +..++|++|+.+++++++|.|||+|+++|++++..+
T Consensus 260 ~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~ 339 (447)
T PLN03127 260 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKRED 339 (447)
T ss_pred cceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHH
Confidence 99999999999 688999999999999999999999965 468999999999999999999999999999999999
Q ss_pred ceeeeEEecCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeec
Q 011837 347 ILSGFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVK 423 (476)
Q Consensus 347 i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~ 423 (476)
+++|+||++++ ++.++++|+|++.+|+... +++|..||++.+|+|+.+++|+|.. .++|++|+
T Consensus 340 i~rG~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~ 405 (447)
T PLN03127 340 VQRGQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVM 405 (447)
T ss_pred CCCccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccC
Confidence 99999999985 5678899999999976321 3678999999999999999999842 23578899
Q ss_pred CCCEEEEEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 424 NGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 424 ~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
+|+.+.|+|+|++|+|++++ |||+||++|+|+|+|+|+++.
T Consensus 406 ~gd~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 406 PGDNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred CCCEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 99999999999999999974 899999999999999999874
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-62 Score=445.06 Aligned_cols=378 Identities=30% Similarity=0.468 Sum_probs=322.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..+|++.||+.+||+|||||||..++...+. ..|..++....-.|..++|++||+||+.+...++
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahveye 71 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE 71 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEEe
Confidence 3678999999999999999999998842211 1111222222235778999999999999999999
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+.++.+..+|+|||.||++||++|+.++|++||||+|++|.+ +||+||+.+++..|+|.+++++||+|+ ++
T Consensus 72 t~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm--vd 142 (394)
T COG0050 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM--VD 142 (394)
T ss_pred cCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--cC
Confidence 999999999999999999999999999999999999999997 899999999999999999999999999 54
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc-chHHHHhhc-cCCCCCCCCCCeEE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRM 277 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~~~ 277 (476)
+++.++.+..+++++|..++|+ ..+.|++--||+....-. .+|... ..|+++++. +|.|.++.++||++
T Consensus 143 -d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPflm 213 (394)
T COG0050 143 -DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPFLM 213 (394)
T ss_pred -cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCcccccccc
Confidence 5788899999999999999997 457888888876543211 124321 236677765 68999999999999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC--ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEE
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 353 (476)
+|.|+| .++|++++|||+.|+|++|+.+.+.... ++..|++++++++..+++.||++|++.|+++.+.++.||++|
T Consensus 214 pvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvL 293 (394)
T COG0050 214 PVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVL 293 (394)
T ss_pred cceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEe
Confidence 999999 6899999999999999999999987655 567899999999999999999999999999999999999999
Q ss_pred ecCCCCcccccEEEEEEEEeccc---CcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEE
Q 011837 354 SSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVC 430 (476)
Q Consensus 354 ~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v 430 (476)
+.|+ ...+.++|+|+++++..- .|++.-.||.+.+++++..++..+.- .+...++.+|+.+.+
T Consensus 294 akpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l-------------~eg~emvmpgdnv~~ 359 (394)
T COG0050 294 AKPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITL-------------PEGVEMVMPGDNVKM 359 (394)
T ss_pred ecCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEec-------------cCCcceecCCCceEE
Confidence 9998 466789999999997532 13788899999999999988885441 123456999999999
Q ss_pred EEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 431 RIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 431 ~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
.++|.+|+++|.. .||.+|..|+|+|.|+|++|.
T Consensus 360 ~veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 360 VVELIHPIAMEEG------LRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred EEEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeec
Confidence 9999999999987 699999999999999999985
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-63 Score=460.51 Aligned_cols=384 Identities=31% Similarity=0.449 Sum_probs=328.9
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
.-..+|++.||+.+||+|||||||..++..- -.+.|...+....-.|..++|+.|||||+.....
T Consensus 47 ~f~R~KPHvNVGTIGHVDHGKTTLTaAITki---------------la~~g~A~~~kydeID~APEEkaRGITIn~aHve 111 (449)
T KOG0460|consen 47 VFVRDKPHVNVGTIGHVDHGKTTLTAAITKI---------------LAEKGGAKFKKYDEIDKAPEEKARGITINAAHVE 111 (449)
T ss_pred ccccCCCcccccccccccCCchhHHHHHHHH---------------HHhccccccccHhhhhcChhhhhccceEeeeeee
Confidence 3456789999999999999999999987321 1123333343344568889999999999999999
Q ss_pred EEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
+++..+.|.-+|||||.||++|||+|+++.|+|||||.|++|.+ +||+||+.+++..|+++++|++||.|+
T Consensus 112 YeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~-- 182 (449)
T KOG0460|consen 112 YETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL-- 182 (449)
T ss_pred eeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--
Confidence 99999999999999999999999999999999999999999997 799999999999999999999999999
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhc-cCCCCCCCCCCeE
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFR 276 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~~~~~~~~p~~ 276 (476)
++ +++.++-+.-+++++|..+||+ ..+.|+|.-||+...-=.+.- .....-.-|++.+|. +|.|.++.++||.
T Consensus 183 V~-d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~pe----ig~~aI~kLldavDsyip~P~R~~~~pFl 256 (449)
T KOG0460|consen 183 VD-DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQPE----IGLEAIEKLLDAVDSYIPTPERDLDKPFL 256 (449)
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCcc----ccHHHHHHHHHHHhccCCCcccccCCCce
Confidence 53 4677888888999999999998 568899998876643111110 000001126777777 8999999999999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC--ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeE
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 352 (476)
++|.++| .++|+|++|+++.|.|+.||++.+...+ .+..|+.|+++++.+++|.|||.+++-|+|++..+++|||+
T Consensus 257 ~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmv 336 (449)
T KOG0460|consen 257 LPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMV 336 (449)
T ss_pred eehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccE
Confidence 9999999 6999999999999999999999998766 46789999999999999999999999999999999999999
Q ss_pred EecCCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEE
Q 011837 353 LSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 353 l~~~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
++.|++ ..+.+.|+|++++|..-. ++++..+|.+.+++.+..+++++.... ..+++.+||.+.
T Consensus 337 l~~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~~~ 402 (449)
T KOG0460|consen 337 LAKPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGENVK 402 (449)
T ss_pred EecCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCCeE
Confidence 999996 778899999999975322 378889999999999999999986421 135699999999
Q ss_pred EEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 430 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 430 v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
+++.|-+|+++|+. .||.||+.|+|||.|+|+++.+
T Consensus 403 ~~~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 403 VEVTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EEEEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 99999999999986 7999999999999999999876
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.4e-57 Score=463.94 Aligned_cols=346 Identities=22% Similarity=0.382 Sum_probs=291.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE-
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE- 119 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~- 119 (476)
..++.++|+++||+|||||||+++|. |. .+|..++|++||+|+++++..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLt---g~-------------------------~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALS---GV-------------------------KTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHh---CC-------------------------CcccchhhHHhCCchhcccccccc
Confidence 56788999999999999999999994 21 24667889999999999887542
Q ss_pred --------------eC------------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCC
Q 011837 120 --------------TE------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 167 (476)
Q Consensus 120 --------------~~------------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~ 167 (476)
.. .+.++|+|||||++|+++|+++++.+|+++|||||.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~------ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCP------ 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCcc------
Confidence 11 2479999999999999999999999999999999998621
Q ss_pred CCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccC
Q 011837 168 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 247 (476)
Q Consensus 168 ~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~ 247 (476)
++||++|+.++..++++++|||+||||+.. .+++++..+++..+++.... ...+++|+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~----~~~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVK----EAQAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccC----HHHHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 279999999999999998999999999943 34455566666666665432 367999999999999976
Q ss_pred CCCCCCcchHHHHhh-ccCCCCCCCCCCeEEEEEEEE--cc--------CCeEEEEEEEEeeEecCCEEEEecCC-----
Q 011837 248 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 311 (476)
Q Consensus 248 ~~~w~~g~~l~~~l~-~i~~~~~~~~~p~~~~v~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~----- 311 (476)
|.+.|+ .++.|.++.+.|++++|+++| ++ .|+|++|+|.+|+|++||.|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 677777 688887888899999999887 22 69999999999999999999999975
Q ss_pred --------ceEEEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc----
Q 011837 312 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 376 (476)
Q Consensus 312 --------~~~~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~---- 376 (476)
..++|+||+.++.++++|.|||+|+|+|+ +++..++.||+||++++.+++.++.|+|++.|++..
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 35799999999999999999999999988 788889999999999987777778999999997542
Q ss_pred -------C-cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccc
Q 011837 377 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQ 448 (476)
Q Consensus 377 -------~-~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~ 448 (476)
. ..+|+.||++.+|+++.++.|+|..|. . .. .++|++++|+|+.+.
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~---------------~~--~~~l~l~~P~~~~~g----- 428 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D---------------DG--IAKLELTTPVCTSVG----- 428 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C---------------Ce--EEEEEECccEeccCC-----
Confidence 0 157999999999999999999998752 1 01 677999999998876
Q ss_pred cceEEEEeC----CcEEEEEEEEE
Q 011837 449 LGRFTLRTE----GKTVAVGKVTE 468 (476)
Q Consensus 449 lgrfilr~~----~~tva~G~V~~ 468 (476)
.||+||+. .+|+|+|+|..
T Consensus 429 -dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 429 -EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -CEEEEEeccCCCcEEEEEEEEcC
Confidence 69999974 37999999975
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=8.7e-55 Score=459.96 Aligned_cols=338 Identities=25% Similarity=0.382 Sum_probs=293.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CCeEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 125 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 125 (476)
.|+++||+|||||||+++|. |. .+|..++|+++|+|++.++..+.. ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g~-------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---GV-------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---CC-------------------------CCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 68999999999999999983 21 156778899999999999888866 46789
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~ 205 (476)
+|||||||++|.++|+.++..+|+++||||+++|.. +||++|+.++..++++++|||+||||+ + +++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDl--v--~~~~~ 122 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADR--V--DEARI 122 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCcc--C--CHHHH
Confidence 999999999999999999999999999999999975 799999999999999988899999999 4 35677
Q ss_pred HHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEE--
Q 011837 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 206 ~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~-- 283 (476)
+.+.+++.++++..++. ..+++|+||++|+|+++ |.+.|..++.+....++|+|++|+++|
T Consensus 123 ~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 78888898888887764 46899999999999987 667777776666667899999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEec-cCccCceeeeEEecCCCCccc
Q 011837 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVAA 362 (476)
Q Consensus 284 ~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~ 362 (476)
++.|+|++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.||++|+++|++ ++..++++||+|++++ ++.+
T Consensus 186 ~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~~ 264 (614)
T PRK10512 186 KGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPEP 264 (614)
T ss_pred CCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCcc
Confidence 6899999999999999999999999999999999999999999999999999999997 8889999999999885 4455
Q ss_pred ccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeec
Q 011837 363 VTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEK 442 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~ 442 (476)
+..+.+ ++.. ..+++.|+++.+|+|+.++.|+|..+ +.+.+++.+++|+++..
T Consensus 265 ~~~~~~---~l~~--~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~ 317 (614)
T PRK10512 265 FTRVIV---ELQT--HTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLAD 317 (614)
T ss_pred ceeEEE---EEcC--CccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccC
Confidence 555533 3221 26789999999999999999999865 12578999999999877
Q ss_pred ccCccccceEEEEe--CCcEEEEEEEEEcCCCCC
Q 011837 443 FADFAQLGRFTLRT--EGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 443 ~~~~~~lgrfilr~--~~~tva~G~V~~v~~~~~ 474 (476)
. .||+||+ ..+|+|+|+|+++.++-.
T Consensus 318 g------dr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 318 N------DRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred C------CEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 5 6999999 468999999999876643
No 23
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=6.4e-53 Score=428.95 Aligned_cols=344 Identities=25% Similarity=0.421 Sum_probs=283.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.+||+++||+|||||||+++|. + ..+|..++|+++|+|++.++..+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT---G-------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh---C-------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 56788999999999999999999982 1 1268889999999999987654333
Q ss_pred C--------------------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHH
Q 011837 121 E--------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 174 (476)
Q Consensus 121 ~--------------------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~ 174 (476)
. .+.++|+|||||++|..+++.+++.+|++++|+|+.++.. ..++.+|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~ 130 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEH 130 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHH
Confidence 1 2689999999999999999999999999999999998752 1689999
Q ss_pred HHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc
Q 011837 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 254 (476)
Q Consensus 175 l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g 254 (476)
+..+..++++++++|+||+|+... +...+..+++..+++.... .+.+++|+||++|.|+.+
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gI~~------------ 191 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSK----ERALENYEQIKEFVKGTVA---ENAPIIPVSALHKVNIDA------------ 191 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccc----hhHHHHHHHHHHHhccccC---CCCeEEEEECCCCcCHHH------------
Confidence 999999998778999999999432 2222333455555543211 256899999999999987
Q ss_pred chHHHHhhc-cCCCCCCCCCCeEEEEEEEE--cc--------CCeEEEEEEEEeeEecCCEEEEecCCc-----------
Q 011837 255 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNKA----------- 312 (476)
Q Consensus 255 ~~l~~~l~~-i~~~~~~~~~p~~~~v~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~~----------- 312 (476)
|.+.|.. ++.|.+..++|+|++|+++| ++ +|+|++|+|.+|+|++||.|.++|++.
T Consensus 192 --L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~ 269 (411)
T PRK04000 192 --LIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEP 269 (411)
T ss_pred --HHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccccc
Confidence 5555554 67777777899999999998 22 577999999999999999999999863
Q ss_pred -eEEEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc-------Ccccc
Q 011837 313 -QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIF 381 (476)
Q Consensus 313 -~~~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i 381 (476)
.++|+||+.++.++++|.|||+|+++|+ +++..++++|+||++++.+++.+++|+|++.|++.. ...+|
T Consensus 270 ~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i 349 (411)
T PRK04000 270 ITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPI 349 (411)
T ss_pred ceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCC
Confidence 5799999999999999999999999996 677788999999999998888889999999996531 13579
Q ss_pred cCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEE--EeCC-
Q 011837 382 TAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG- 458 (476)
Q Consensus 382 ~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfil--r~~~- 458 (476)
.+||++.+|+++.+++|+|..|. ++ .++++|.+|+++.+. .||+| |+++
T Consensus 350 ~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g------~r~~~~~~~~~~ 401 (411)
T PRK04000 350 KTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEG------DRVAISRRVGGR 401 (411)
T ss_pred CCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCC------CEEEEEEecCCc
Confidence 99999999999999999999762 12 567778999998875 69999 5667
Q ss_pred -cEEEEEEEE
Q 011837 459 -KTVAVGKVT 467 (476)
Q Consensus 459 -~tva~G~V~ 467 (476)
|++|.|.|.
T Consensus 402 ~~~~~~~~~~ 411 (411)
T PRK04000 402 WRLIGYGIIK 411 (411)
T ss_pred EEEEEEEEeC
Confidence 899999873
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=7.3e-53 Score=429.02 Aligned_cols=341 Identities=25% Similarity=0.416 Sum_probs=281.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE---
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--- 119 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--- 119 (476)
++.+||+++||+|||||||+++|. + ..+|...+|++||+|++.++..+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~-------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---G-------------------------VWTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---C-------------------------eecccCHhHHHcCceeEeccccccccc
Confidence 577999999999999999999982 1 126778899999999998866543
Q ss_pred -----------e------------CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH
Q 011837 120 -----------T------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 120 -----------~------------~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~ 176 (476)
+ .++.++|+|||||++|.++|+++++.+|++|||||+++|.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 1 14689999999999999999999999999999999998851 269999999
Q ss_pred HHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcch
Q 011837 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 256 (476)
Q Consensus 177 ~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~ 256 (476)
.+..++++++|+++||+|+... +...+..+++..+++.... ..++++|+||++|+|+.+
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSK----EKALENYEEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCH----HHHHHHHHHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 9999999889999999999432 2222333445555544321 256899999999999987
Q ss_pred HHHHhhc-cCCCCCCCCCCeEEEEEEEE--cc--------CCeEEEEEEEEeeEecCCEEEEecCC------------ce
Q 011837 257 LFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 313 (476)
Q Consensus 257 l~~~l~~-i~~~~~~~~~p~~~~v~~~~--~~--------~G~v~~g~v~sG~l~~gd~v~~~p~~------------~~ 313 (476)
|.+.|.. ++.|.++.++|++|+|+++| ++ +|+|++|+|.+|+|++||.|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 6666665 67777778899999999998 23 57899999999999999999999985 24
Q ss_pred EEEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc-------CcccccC
Q 011837 314 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 383 (476)
Q Consensus 314 ~~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~ 383 (476)
++|+||++++.++++|.|||+|+|+|+ +++..++++|++|++++.+|+.+++|+|++.|+... .+.+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788899999999999987777889999999996532 1368999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEE--EeCC--c
Q 011837 384 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG--K 459 (476)
Q Consensus 384 G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfil--r~~~--~ 459 (476)
||++.+|+++.+++|+|..+. ++ .++++|.+|+|+... .||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~--------------------~~--~~~l~l~~p~~~~~g------~r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSAR--------------------KD--EIEVKLKRPVCAEEG------DRVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcC--------------------Cc--EEEEEECCcEEcCCC------CEEEEEEecCCceE
Confidence 999999999999999998752 11 367789999998876 69999 3345 7
Q ss_pred EEEEEEE
Q 011837 460 TVAVGKV 466 (476)
Q Consensus 460 tva~G~V 466 (476)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 25
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-53 Score=401.72 Aligned_cols=365 Identities=30% Similarity=0.458 Sum_probs=304.0
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
........+++|++.||+|||||||++.| .+|..|++.- . .-.++|..+.|-++|.|-+.++.
T Consensus 109 r~~~~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G-----------~----tR~~ldv~kHEverGlsa~iS~~ 171 (527)
T COG5258 109 RKTEEAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDG-----------A----TRSYLDVQKHEVERGLSADISLR 171 (527)
T ss_pred ecccCCCceEEEEEeccccCCcceEEEEE--EecCCCCCCc-----------c----hhhhhhhhhHHHhhccccceeEE
Confidence 34444567899999999999999999998 6888877520 0 01123333444444444444333
Q ss_pred EE-----------------------EeCCeEEEEEeCCCCcCcHHHHhhhc--cccCEEEEEEECCCCccccccCCCCch
Q 011837 117 HF-----------------------ETETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 117 ~~-----------------------~~~~~~~~liDtPGh~~f~~~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt 171 (476)
-+ +..++.+.|+||-||+.|++++++|+ +..|+.+|+|.|++|++ .+|
T Consensus 172 v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~t 244 (527)
T COG5258 172 VYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMT 244 (527)
T ss_pred EEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhh
Confidence 22 23457799999999999999999998 58999999999999985 699
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc-------------------CCCeeEEee
Q 011837 172 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPI 232 (476)
Q Consensus 172 ~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------------------~~~~~~ipv 232 (476)
+||+.++.++++| +||++||+|+ . ..++++.+.+++..+|+..+--+ ..-+|++.+
T Consensus 245 kEHLgi~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~t 319 (527)
T COG5258 245 KEHLGIALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYT 319 (527)
T ss_pred hHhhhhhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEE
Confidence 9999999999999 8899999999 3 46899999999999998654211 114699999
Q ss_pred ecccccccccccccCCCCCCCcchHHHHhhccCCCCC-CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEec
Q 011837 233 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP 309 (476)
Q Consensus 233 Sa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~-~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p 309 (476)
|+.+|+|++- |.+++..+|...+ +...||.|+|++.| ++.|+|+.|.|.+|.|+.||+++++|
T Consensus 320 SsVTg~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP 385 (527)
T COG5258 320 SSVTGEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGP 385 (527)
T ss_pred ecccCccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEcc
Confidence 9999999985 6677777877533 56789999999999 79999999999999999999999999
Q ss_pred CC----ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcccccEEEEEEEEecccCc-ccccCC
Q 011837 310 NK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAG 384 (476)
Q Consensus 310 ~~----~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G 384 (476)
-. ..++|+||++|+-++++|.||++++++|+|+..+.+++||||+.+ .+|.++++|+|++++ +.| +.|+.|
T Consensus 386 ~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aG 461 (527)
T COG5258 386 FKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAG 461 (527)
T ss_pred CCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecC
Confidence 65 678999999999999999999999999999999999999999987 688999999999999 556 789999
Q ss_pred cEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeecccCccccceEEEEeCCcEEEE
Q 011837 385 YKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAV 463 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~~~tva~ 463 (476)
|.+++|+-+.++++++..| |. .+|++||...++++|. +|-.++.. .+|++| +|++.|+
T Consensus 462 ye~v~H~etI~e~~~f~~i----d~----------~~L~~GD~g~vr~~fkyrP~~v~eG------Q~fvFR-eGrskgv 520 (527)
T COG5258 462 YEPVFHYETIREAVYFEEI----DK----------GFLMPGDRGVVRMRFKYRPHHVEEG------QKFVFR-EGRSKGV 520 (527)
T ss_pred ceeeeEeeEeeheeEEEEc----cc----------ccccCCCcceEEEEEEeCchhhccC------cEEEEe-cCCCccc
Confidence 9999999999999998865 32 3599999999999997 89888763 467666 6999999
Q ss_pred EEEEEc
Q 011837 464 GKVTEL 469 (476)
Q Consensus 464 G~V~~v 469 (476)
|.|+.+
T Consensus 521 G~v~~~ 526 (527)
T COG5258 521 GRVIRV 526 (527)
T ss_pred eEEecc
Confidence 999976
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=4.7e-51 Score=430.60 Aligned_cols=335 Identities=27% Similarity=0.408 Sum_probs=284.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++||+|||||||+++|. |. .+|..++|+.+|+|++.++..+.++++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLt---g~-------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALT---GI-------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHh---Cc-------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 479999999999999999983 10 14566788899999999999999999999
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~ 205 (476)
+|||||||++|.++|+.++..+|++++|||+++|.+ +|+++|+..+..+|+|++|||+||||+ + +++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dl--v--~~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADR--V--NEEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCC--C--CHHHH
Confidence 999999999999999999999999999999999875 799999999999999989999999999 4 24567
Q ss_pred HHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEE--
Q 011837 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 206 ~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~-- 283 (476)
+.+.+++..+++..++. .+++++|+||++|.|+.++... |.+.++.++.+ ..++|+|++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 77778888888877663 2578999999999999986432 45555555443 25789999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcccc
Q 011837 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 363 (476)
Q Consensus 284 ~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 363 (476)
++.|+|++|+|.+|++++||+|.++|++..++|++|+.+++++++|.||++|+|+|++++..+++||++++++..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888766432 2
Q ss_pred cEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecc
Q 011837 364 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 443 (476)
Q Consensus 364 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~ 443 (476)
..+...+.. ..++..|+.+.+|+++.++.|+|..+ |. ..+++++++|+++...
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----~~------------------~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLL----DK------------------GIALLTLDAPLILAKG 317 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEc----cC------------------cEEEEEECCceecCCC
Confidence 233333322 24688999999999999999998754 21 1677889999998876
Q ss_pred cCccccceEEEEeC-CcEEEEEEEEEc
Q 011837 444 ADFAQLGRFTLRTE-GKTVAVGKVTEL 469 (476)
Q Consensus 444 ~~~~~lgrfilr~~-~~tva~G~V~~v 469 (476)
.||++|++ .+|+|+|.|++.
T Consensus 318 ------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 318 ------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------CEEEEEeCCCEEEeeeEEecC
Confidence 59999995 589999999987
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=4.3e-52 Score=391.95 Aligned_cols=378 Identities=25% Similarity=0.370 Sum_probs=311.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchH------HHHHHHHHHhhcCccchhhhhhcCCchhhhc------cccE
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERI------KGKT 110 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~------~g~t 110 (476)
--..+|+++|++|+|||||++.| ..|.++++ .+++ +++..+.||+|+....++.++..... .|..
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFR-HKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFR-HKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred ceeEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhh-hhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 34689999999999999999988 67888764 2444 45566999999999988887654321 1111
Q ss_pred EeeeeEE-EEeCCeEEEEEeCCCCcCcHHHHhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011837 111 VEVGRAH-FETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 111 i~~~~~~-~~~~~~~~~liDtPGh~~f~~~~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI 187 (476)
. .+.. ++-..+.++|||..||++|+++++.|+. .+|+.+|+|.|+.|+. ++|+||+.++.++.+| ++
T Consensus 208 L--dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-Vf 277 (641)
T KOG0463|consen 208 L--DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VF 277 (641)
T ss_pred c--cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EE
Confidence 1 1222 2334577999999999999999999985 7999999999999996 8999999999999999 77
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC--------------------cCCCeeEEeeecccccccccccccC
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKS 247 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~--------------------~~~~~~~ipvSa~~g~~i~~~~~~~ 247 (476)
||++|+|+++++ -+++..+.+..++++.|+. +..-+|++.+|..+|+|+.-
T Consensus 278 vVVTKIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L----- 348 (641)
T KOG0463|consen 278 VVVTKIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL----- 348 (641)
T ss_pred EEEEeeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-----
Confidence 999999998764 5566677788888887654 22345888889999998864
Q ss_pred CCCCCCcchHHHHhhccCCC-CCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC----ceEEEEEEE
Q 011837 248 LCPWWNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIY 320 (476)
Q Consensus 248 ~~~w~~g~~l~~~l~~i~~~-~~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~si~ 320 (476)
|..+|+.++.. ....+.|..|.|+|+| ++.|+|++|+..+|+|+.+|.+.++|.. .+..||||+
T Consensus 349 ---------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH 419 (641)
T KOG0463|consen 349 ---------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH 419 (641)
T ss_pred ---------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh
Confidence 34455555432 3456789999999998 7999999999999999999999999975 578999999
Q ss_pred ECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEE
Q 011837 321 CDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECE 399 (476)
Q Consensus 321 ~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~ 399 (476)
+.+-++..+.+||.++++|+.++..++++|||+++|+..|+++|.|+|+|.+ ++| +.|.+.|+.++|||+++|+|+
T Consensus 420 RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAt 496 (641)
T KOG0463|consen 420 RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTAT 496 (641)
T ss_pred hccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceee
Confidence 9999999999999999999999999999999999999999999999999999 677 789999999999999999999
Q ss_pred EEEEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCCCCC
Q 011837 400 IVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 475 (476)
Q Consensus 400 i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~~~ 475 (476)
|.++. -+||+.||.+.|.|+|- .|-++.+ |.-.++++|||.|+|.|+++.+.+++
T Consensus 497 ivsM~--------------kdcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 497 IVSMG--------------KDCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred eeecC--------------hhhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 99762 24689999999999984 5655544 34444557999999999999887764
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-50 Score=389.38 Aligned_cols=337 Identities=28% Similarity=0.411 Sum_probs=280.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
.|+..||+|||||||+..|. | ..+|..++|++||+|+|.++.++...++.+.
T Consensus 2 ii~t~GhidHgkT~L~~alt---g-------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---G-------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---c-------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 58999999999999999882 1 2367789999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|+|+|||++|+++|+.|+...|+|+||||+++|++ .||.||+.++..+|+++.|+|+||+|+ ++ +++.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~--~d--~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADR--VD--EARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEecccc--cc--HHHHH
Confidence 99999999999999999999999999999999985 799999999999999999999999999 42 34555
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccC-CCCCCCCCCeEEEEEEEE--
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 283 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~-~~~~~~~~p~~~~v~~~~-- 283 (476)
+..+++ ++.+.+. +.+++++|+++|+|+++ |.+.|..++ .+.++.+.|||++|+++|
T Consensus 123 ~~i~~I---l~~l~l~---~~~i~~~s~~~g~GI~~--------------Lk~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQI---LADLSLA---NAKIFKTSAKTGRGIEE--------------LKNELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHH---Hhhcccc---cccccccccccCCCHHH--------------HHHHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 444444 4443343 67899999999999998 444444444 467888999999999999
Q ss_pred ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcccc
Q 011837 284 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 363 (476)
Q Consensus 284 ~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~ 363 (476)
++.|+|++|.+.||++++||++++.|.++.++|||||.+++++++|.||++|+++|+|++.+++.||++|+.++. ..++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~-~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEP-LEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCC-CCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999874 4678
Q ss_pred cEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecc
Q 011837 364 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 443 (476)
Q Consensus 364 ~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~ 443 (476)
++|.+.+.|... ...++..+..+.+|.+..+++|++..+... +++.+..|+..-.
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-----------------------~~l~~~k~i~~~~- 316 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-----------------------AELNLVKPIALGD- 316 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeecccc-----------------------ceeeeeccccccc-
Confidence 899998888432 236789999999999999999998754211 2333444444322
Q ss_pred cCccccceEEEEeC--CcEEEEEEEEEcCCCC
Q 011837 444 ADFAQLGRFTLRTE--GKTVAVGKVTELPTVS 473 (476)
Q Consensus 444 ~~~~~lgrfilr~~--~~tva~G~V~~v~~~~ 473 (476)
.++++||+. ..+.++++|+....+.
T Consensus 317 -----~~~l~lr~~~a~~~~~g~rvl~~~~~~ 343 (447)
T COG3276 317 -----NDRLVLRDNSAVIKLAGARVLSLNLPL 343 (447)
T ss_pred -----CceEEEEcccceeeeccceEEecCCCC
Confidence 246667665 3566677777665543
No 29
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-48 Score=373.82 Aligned_cols=370 Identities=37% Similarity=0.644 Sum_probs=333.8
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+.++||.++||+++||||+.+ +.+|.++.+.+.++.+++.+.|+.+|.|+|++|....|+++|++|+...+.|++
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t 79 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 79 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccc
Confidence 46788999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
..+.++++|.|||.+|.++|+.+.++||.++++|.+..|.||++....+|++||+.++..+|+.++|+.+||||.....|
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
++.++.++.+..+.+.++.++++. +. ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~~----------------------------------~~------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNPA----------------------------------AV------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCCh----------------------------------hh------------------hc
Confidence 998888887766665555544310 00 12
Q ss_pred EEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCC-
Q 011837 281 DKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA- 357 (476)
Q Consensus 281 ~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~- 357 (476)
++++ +.| +..|.++.++.+...|...+.++++..+++..-.++.+|+.++++..++...++++|.++.+..
T Consensus 188 ~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 2221 122 7788899999999999888889999999988888999999999999999999999999998887
Q ss_pred CCcccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcc
Q 011837 358 KPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 436 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~ 436 (476)
.|+.....|.|++.+ +.| ..|..||.+.+.||+.+.+|++..|..++|..+|......|+++++++.+.+...|.+
T Consensus 262 ~p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~k 338 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGK 338 (391)
T ss_pred CCccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCC
Confidence 455567789999999 555 7899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecccCccccceEEEEeCCcEEEEEEEEEcCCCCC
Q 011837 437 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 474 (476)
Q Consensus 437 pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~~ 474 (476)
|+|+|.|++++.+|||.+||...|+|.|+|..+.+...
T Consensus 339 p~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~ 376 (391)
T KOG0052|consen 339 PLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDA 376 (391)
T ss_pred ccccccccccccccchhhhhhhccccccceeeeeeccc
Confidence 99999999999999999999999999999998876543
No 30
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-46 Score=349.24 Aligned_cols=373 Identities=23% Similarity=0.351 Sum_probs=309.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchH------HHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA- 116 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~- 116 (476)
-.++++++|..|+|||||++.| ..|.+|++ .++++.|+. .+||+|+.+..++.++..+. .++.+..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~HEi-qsGrTSsis~evlGFd~~g~----vVNY~~~~ 238 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPHEI-QSGRTSSISNEVLGFDNRGK----VVNYAQNM 238 (591)
T ss_pred eEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchhhh-ccCcccccchhccccccccc----ccchhhcc
Confidence 4589999999999999999988 67778775 466666554 78999999988888875433 2332211
Q ss_pred ----EEEeCCeEEEEEeCCCCcCcHHHHhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 117 ----HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 117 ----~~~~~~~~~~liDtPGh~~f~~~~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
..+...+.++|||.+||.+|.++++.|+. .+|+|+|||+|+.|.. ..|+||+.++.++++| |+|++
T Consensus 239 taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvlv 310 (591)
T KOG1143|consen 239 TAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVLV 310 (591)
T ss_pred cHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEEE
Confidence 13446688999999999999999999987 6899999999999984 7999999999999999 88999
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCc--------------------CCCeeEEeeecccccccccccccCCCC
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNV--------------------KKDVQFLPISGLMGLNMKTRVDKSLCP 250 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------------------~~~~~~ipvSa~~g~~i~~~~~~~~~~ 250 (476)
+|||+. +..-++.+.+++..+++..|+.. .+-+|++.+|+.+|+|+.-
T Consensus 311 tK~Dl~----~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-------- 378 (591)
T KOG1143|consen 311 TKMDLV----DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-------- 378 (591)
T ss_pred Eeeccc----cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH--------
Confidence 999994 34567888999999999888741 2346899999999999874
Q ss_pred CCCcchHHHHhhccCCCCC------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC----ceEEEEE
Q 011837 251 WWNGPCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLA 318 (476)
Q Consensus 251 w~~g~~l~~~l~~i~~~~~------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~s 318 (476)
|..+|+.+++-.. -...|..|.|++.| +..|.|+.|.+.+|.++.|+.+.++|.. .+.+|-|
T Consensus 379 ------l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~s 452 (591)
T KOG1143|consen 379 ------LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGS 452 (591)
T ss_pred ------HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeee
Confidence 3445565544322 12467789999998 6899999999999999999999999976 5789999
Q ss_pred EEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCCcccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEE
Q 011837 319 IYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEE 397 (476)
Q Consensus 319 i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~ 397 (476)
|++++.++..+.||+.+.|.|...+..-+++|||+..++..|+.+..|+|.+.+ +-| +.|..|++..+|+|+++++
T Consensus 453 I~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqT 529 (591)
T KOG1143|consen 453 IRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQT 529 (591)
T ss_pred eeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceeee
Confidence 999999999999999999999877777799999999999889999999999998 556 8899999999999999999
Q ss_pred EEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEc-ceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 398 CEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 398 ~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~-~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
|.|..|.. .++|+.|++|.|.|.|- +|-++.+ |.-+|+++|.|.|+|.|++|.+-
T Consensus 530 Avi~~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir~-------G~~ilfReG~tKGiG~Vt~Vfp~ 585 (591)
T KOG1143|consen 530 AVITHIDD-------------ADCLRTGKWAVVKFCFAYHPEYIRE-------GSPILFREGKTKGIGEVTKVFPC 585 (591)
T ss_pred eeeeeecc-------------cccccCCceEEEEEEecCCchhccC-------CCeeeeecccccccceEEEEEec
Confidence 99987641 24589999999999973 5654443 66677778999999999998653
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-42 Score=320.93 Aligned_cols=343 Identities=26% Similarity=0.405 Sum_probs=283.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 120 (476)
++..||+++||+|||||||+.+| +|. -+|...+|.+||+||.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sGv-------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SGV-------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hce-------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 67899999999999999999988 232 257778999999999998753110
Q ss_pred ------------------C------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH
Q 011837 121 ------------------E------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 121 ------------------~------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~ 176 (476)
. -+.+.|+|+|||+-.+.+|++|++..|+|+|||+|++..- ++||+|||.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcP------QPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCC------CCchHHHHH
Confidence 0 1679999999999999999999999999999999998753 699999999
Q ss_pred HHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcch
Q 011837 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 256 (476)
Q Consensus 177 ~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~ 256 (476)
.+..+|++++|++-||+|+ + ++++..+-.+++.+|++..-. ++.|+||+||..+.|++.
T Consensus 134 AleIigik~iiIvQNKIDl--V--~~E~AlE~y~qIk~FvkGt~A---e~aPIIPiSA~~~~NIDa-------------- 192 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDL--V--SRERALENYEQIKEFVKGTVA---ENAPIIPISAQHKANIDA-------------- 192 (415)
T ss_pred HHhhhccceEEEEecccce--e--cHHHHHHHHHHHHHHhccccc---CCCceeeehhhhccCHHH--------------
Confidence 9999999999999999999 4 456666666777777775432 478999999999999997
Q ss_pred HHHHhh-ccCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeEecCCEEEEecCC------------ce
Q 011837 257 LFEALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNK------------AQ 313 (476)
Q Consensus 257 l~~~l~-~i~~~~~~~~~p~~~~v~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~~p~~------------~~ 313 (476)
|.++|. .+|.|.++.++|.+|+|.++|. -.|-|+.|.+.+|.|++||++.+.|+- ..
T Consensus 193 l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 193 LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 566555 5899999999999999999982 268899999999999999999999974 24
Q ss_pred EEEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEecccC------c-ccccC
Q 011837 314 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 383 (476)
Q Consensus 314 ~~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~~------~-~~i~~ 383 (476)
.+|.||+-.+..+++|.||..+++.-. .+.+.|-..|.|+..++..|+..+.|+.+...|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 688999999999999999999998543 3455677889999999998988899999998865211 1 47899
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEEEeC--C--c
Q 011837 384 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE--G--K 459 (476)
Q Consensus 384 G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~--~--~ 459 (476)
|...++.+|+.+.-+.|++.. .+ .+++.|.+|+|.+.. .|.++-+. + |
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k--------------------~d--~~ev~Lk~Pvcae~g------~rvaisRri~~rWR 404 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAK--------------------KD--EIEVKLKRPVCAEIG------ERVAISRRIGNRWR 404 (415)
T ss_pred CCeEEEEeecceeEEEEEEec--------------------Cc--eEEEEeccceecCCC------CEEEEEeeecceEE
Confidence 999999999999988888642 11 467778899998875 35555332 2 6
Q ss_pred EEEEEEEEE
Q 011837 460 TVAVGKVTE 468 (476)
Q Consensus 460 tva~G~V~~ 468 (476)
.+|+|+|.+
T Consensus 405 LIG~G~ik~ 413 (415)
T COG5257 405 LIGYGTIKE 413 (415)
T ss_pred EEeEEEEec
Confidence 999999975
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.3e-41 Score=356.16 Aligned_cols=280 Identities=24% Similarity=0.352 Sum_probs=231.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
++||+|+||+|||||||+++|++.+|.+...+. .-.++||..++|+++|+|+......++|.+++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~---------------v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~k 65 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEA---------------VAERVMDSNDLERERGITILAKNTAIRYNGTK 65 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccc---------------ceeecccCchHHHhCCccEEeeeEEEEECCEE
Confidence 479999999999999999999999998765421 01368999999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
++|||||||.+|..++.++++.+|+++|||||.+|.+ .||++|+..+...++| +|||+||||++. .+
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~-----a~ 132 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPS-----AR 132 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCC-----cC
Confidence 9999999999999999999999999999999999874 7999999999999999 789999999943 24
Q ss_pred HHHHHHHHHHHHHhccCCc-CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEE
Q 011837 205 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 283 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~ 283 (476)
++++.+++..++..++... ...+|++++||++|.+...... ..+.-.+-|..+++.+|.|..+.+.||++.|.+++
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 5566677777777666531 1247899999999987544311 01111112445667788887788899999999987
Q ss_pred --ccCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 284 --KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 284 --~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
+..|++++|||.+|+|+.||.|.+.|.+ ...+|++|+.+ +.++++|.|||+|++ .++ .++.+|++|+
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~gl--~~i~~Gdtl~ 285 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AGL--EDINIGETIA 285 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eCC--cccCCCCEEe
Confidence 5789999999999999999999999974 25789999875 679999999999985 465 4689999999
Q ss_pred cCCCC
Q 011837 355 SVAKP 359 (476)
Q Consensus 355 ~~~~~ 359 (476)
+++.+
T Consensus 286 ~~~~~ 290 (594)
T TIGR01394 286 DPEVP 290 (594)
T ss_pred CCCcc
Confidence 88743
No 33
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=1e-39 Score=306.13 Aligned_cols=218 Identities=64% Similarity=1.049 Sum_probs=197.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.++...+.++++.+.+.|.+++.|++++|...+|+++|+|++.....|++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999999999999999888898888889999999999999999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|+|||||.+|.++++.+++.+|++|+|||+..+.++..|....|+.+++..+..++++++|+++||||+..++|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999866665555679999999998899877999999999965567788899
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCC
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 267 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~ 267 (476)
++.+++..+++.+++.. ..++++|+||++|.|+.+..+ .++||+|+||++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 99999999999888752 357999999999999998765 59999999999999987654
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-39 Score=304.96 Aligned_cols=346 Identities=23% Similarity=0.339 Sum_probs=272.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC---
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--- 121 (476)
.+|++++||+|||||||..+|.. .| .....|..+..++||+|.|+++..+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~-~~-----------------------STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE-LG-----------------------STAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh-hc-----------------------cchhhccCCcccccceeEeecceeeeccccc
Confidence 48999999999999999999831 11 2234678888899999999999877543
Q ss_pred ------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.-+++|+|+|||...+++.+.|+...|.++||||+..|. +.||.||+.+...+-.+ +|||+||+|.
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~-------QtQtAEcLiig~~~c~k-lvvvinkid~ 134 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK-------QTQTAECLIIGELLCKK-LVVVINKIDV 134 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc-------ccccchhhhhhhhhccc-eEEEEecccc
Confidence 245799999999999999999999999999999999997 58999999888877665 8899999998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc----cccccccccCCCCCCCcchHHHHhhc-cCCCCCC
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRD 270 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g----~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~~~~~ 270 (476)
...+..+..+++....+++-|+..+|. .+.|++++||..| +++.+ |.++|.. +-.|.++
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKRD 198 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCcC
Confidence 666555677888888999999999997 5789999999999 44444 6666664 6778899
Q ss_pred CCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCce
Q 011837 271 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 271 ~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 348 (476)
...||.|.|+.+| ||.|+|++|+|.+|.|+.|+.|.+..-+..-+|||++++++++.+|.+||++++.+...+..-+.
T Consensus 199 ~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klle 278 (522)
T KOG0461|consen 199 EEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLE 278 (522)
T ss_pred CCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHh
Confidence 9999999999998 89999999999999999999999988888889999999999999999999999999988888889
Q ss_pred eeeEEecCCCCcccccEEEEEEEEecccCc--ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCC--c--------ccc
Q 011837 349 SGFVLSSVAKPVAAVTEFIAQLQILELLDN--AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTK--K--------PMK 416 (476)
Q Consensus 349 ~G~vl~~~~~~~~~~~~f~a~i~~~~~~~~--~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~--~--------~~~ 416 (476)
||- ++.|+. . ....|-+..++.+.. .+|..-.+..+-+++.++.+.+.-+. -.|.-+. + ...
T Consensus 279 Rgi-~~~pg~-L---k~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E~d 352 (522)
T KOG0461|consen 279 RGI-CGPPGT-L---KSTKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGEFD 352 (522)
T ss_pred ccc-cCCCcc-c---ceeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccccc
Confidence 984 454442 2 333344444332322 45655555555566666666665443 1111110 0 011
Q ss_pred ccceeecCCCEEEEEEEEcceEEeeccc
Q 011837 417 KKVLFVKNGAIVVCRIQVNNSICTEKFA 444 (476)
Q Consensus 417 ~~~~~l~~g~~a~v~~~~~~pi~~e~~~ 444 (476)
-.|..+.+++...+-|++++|+.+.+|+
T Consensus 353 ~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 353 MLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred cChhhcCCchheeeeeeecccccCcccc
Confidence 2466677888888899999999988764
No 35
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-39 Score=309.92 Aligned_cols=279 Identities=25% Similarity=0.374 Sum_probs=235.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.+||||+.|||||||||++.||.++|....++- ....+||.+..|++|||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~---------------v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREE---------------VAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccc---------------hhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 46799999999999999999999999998876531 124579999999999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.+++++|||||.||-.+..+.++..|.++|+|||.+|.+ +||+-.+..+.++|++ .||||||+|++.+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~A---- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDA---- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCC----
Confidence 999999999999999999999999999999999999997 8999999999999998 6789999999654
Q ss_pred HHHHHHHHHHHHHHHhccCCc-CCCeeEEeeeccccccccccccc--CCCCCCCcchHHH-HhhccCCCCCCCCCCeEEE
Q 011837 203 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~~~--~~~~w~~g~~l~~-~l~~i~~~~~~~~~p~~~~ 278 (476)
+.+++.+++..++..++.+. +-++|++..||+.|.--.++.+. .+.| |.+ +++++|.|..+.+.||++.
T Consensus 136 -rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~p------Lfe~I~~hvp~P~~~~d~PlQ~q 208 (603)
T COG1217 136 -RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAP------LFETILDHVPAPKGDLDEPLQMQ 208 (603)
T ss_pred -CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhH------HHHHHHHhCCCCCCCCCCCeEEE
Confidence 45677778888887777542 33689999999999844333211 1122 444 7788999999999999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCcee
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~ 349 (476)
+...- .-.|++..|||.+|++++||.|.+...+ ...+|..+.-+ +.++++|.|||+|+ +.|+. ++..
T Consensus 209 vt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~i 284 (603)
T COG1217 209 VTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINI 284 (603)
T ss_pred EEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--cccc
Confidence 98653 4579999999999999999999988755 45688888765 67999999999999 67775 4889
Q ss_pred eeEEecCCCC
Q 011837 350 GFVLSSVAKP 359 (476)
Q Consensus 350 G~vl~~~~~~ 359 (476)
|+++|+++.+
T Consensus 285 gdTi~d~~~~ 294 (603)
T COG1217 285 GDTICDPDNP 294 (603)
T ss_pred cccccCCCCc
Confidence 9999999843
No 36
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-39 Score=320.99 Aligned_cols=266 Identities=23% Similarity=0.328 Sum_probs=227.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+++|++|+.|+|||||||.++||..+|.+++...+ ..+||..+.||+||||+..-...+.+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 678999999999999999999999999999875433 2468999999999999999888877777
Q ss_pred ---eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 123 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ---~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+.+++||||||.||..+..+.+..||++||||||.+|+ +.||.-.+.++...|+. +|.|+||+|++.++
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 99999999999999999999999999999999999998 48999999999999997 89999999997664
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
.+++..++.+.+... ..+++.+||++|.|++++ |..+++.+|+|....++|||+.+
T Consensus 194 -----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 194 -----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred -----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHh
Confidence 445666666665432 347999999999999985 66788999999999999999999
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEeccC-ccCceeeeEE
Q 011837 280 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGFVL 353 (476)
Q Consensus 280 ~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl 353 (476)
.+.+. -+|.++.++|..|.+++||+|..+.+++...|+.+... ..++....||+..-|.. +.. ..+...|+++
T Consensus 250 fds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 250 FDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEe-ccccccccccccee
Confidence 99984 58999999999999999999999999988888888765 34566666666555422 332 4568899999
Q ss_pred ecCC
Q 011837 354 SSVA 357 (476)
Q Consensus 354 ~~~~ 357 (476)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 8765
No 37
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=333.09 Aligned_cols=279 Identities=23% Similarity=0.332 Sum_probs=229.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+.++||+++||+|||||||+++|++.+|.+..... .-.+++|..++|+++|+|+......+++.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~ 67 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWND 67 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCC
Confidence 35799999999999999999999998887765320 013789999999999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|||||||.+|...+..+++.+|++|||||+.+|.. .|++.++..+..+++| .||++||||++.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a---- 135 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA---- 135 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC----
Confidence 999999999999999999999999999999999999874 7999999999999999 6789999999543
Q ss_pred HHHHHHHHHHHHHHHhccCCc-CCCeeEEeeecccccccccccc--cCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 203 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD--KSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~~--~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
+++++.+++..++..++... ..++|++++||++|.|..+... ....+| |..+++.+|+|.++.++||++.|
T Consensus 136 -~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V 209 (607)
T PRK10218 136 -RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQI 209 (607)
T ss_pred -chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEE
Confidence 45566667777766554431 2357899999999997544321 011233 34567788988888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCEEEEecC-Cc--eEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceee
Q 011837 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 280 ~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~-~~--~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
++++ +..|++++|||++|+|+.||.|.+.+. +. ..+|.+|... +.++++|.|||+|+ +.++ .++..|
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIva--i~gl--~~~~~G 285 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVA--ITGL--GELNIS 285 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEE--EECc--cccccC
Confidence 9986 568999999999999999999999886 43 5778888754 67999999999999 5665 458899
Q ss_pred eEEecCCC
Q 011837 351 FVLSSVAK 358 (476)
Q Consensus 351 ~vl~~~~~ 358 (476)
|+|++++.
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998763
No 38
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-38 Score=308.16 Aligned_cols=268 Identities=24% Similarity=0.392 Sum_probs=232.3
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++++|++|+.|.|||||||..+|+..+|.++.+.|. +.++|....||+||+||....+.+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEE
Confidence 45678999999999999999999999999999999875 35789999999999999998887655
Q ss_pred C-----CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 E-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~-----~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
. .+.++|||||||.||..+..++++.|.+|+|||||++|+ +.||.-+.+++...+.. +|-|+||+||
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3 388999999999999999999999999999999999998 48999999999999997 9999999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCe
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 275 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~ 275 (476)
+.++ .+++++++...+ |++ ....+.+||++|.|++++ |.++++.+|+|..+.++|+
T Consensus 141 P~Ad-----pervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAAD-----PERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCC-----HHHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 7664 345666776654 554 236789999999999995 5668899999999999999
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEecc-CccCcee
Q 011837 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILS 349 (476)
Q Consensus 276 ~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~ 349 (476)
+..+.|+| .-.|.++..||..|++++||+|.++..+....|..+..+ ..+.+...||+..-+.. ++ +..+.+.
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a-~iK~v~d~~V 275 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIA-GIKDVRDARV 275 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEE-eeeecccCcc
Confidence 99999988 457999999999999999999999999999999999886 46778899999777633 33 3367999
Q ss_pred eeEEecCC
Q 011837 350 GFVLSSVA 357 (476)
Q Consensus 350 G~vl~~~~ 357 (476)
||+++...
T Consensus 276 GDTiT~~~ 283 (603)
T COG0481 276 GDTITLAS 283 (603)
T ss_pred cceEeccC
Confidence 99999654
No 39
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=2.3e-38 Score=334.65 Aligned_cols=269 Identities=24% Similarity=0.379 Sum_probs=222.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+.++||+++||+|||||||+++|++.+|.++.+.+ ..+++|..++|+++|+|+......+.|.
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~ 67 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYK 67 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEE
Confidence 356799999999999999999999999998876431 2477999999999999999988877664
Q ss_pred -----CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 122 -----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 -----~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
++.++|||||||.+|...+.++++.+|++|||||+++|.. .|+.+++..+...++| +|+|+||+|+.
T Consensus 68 ~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-------~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 68 AKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred ccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 5789999999999999999999999999999999999863 6899999988888998 88999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeE
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 276 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~ 276 (476)
..+ ++++.+++... +++. ...++++||++|.|+.++ +..+++.+|.|..+.++|++
T Consensus 140 ~a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~L-------------l~~I~~~lp~P~~~~~~pl~ 195 (600)
T PRK05433 140 AAD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEV-------------LEAIVERIPPPKGDPDAPLK 195 (600)
T ss_pred ccc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHH-------------HHHHHHhCccccCCCCCCce
Confidence 332 23334444443 2332 235899999999999984 33344668888888899999
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEeccC-ccCceee
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSG 350 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G 350 (476)
+.|.+++ +..|.+++|||.+|+|+.||.|.+.|++...+|++|..+ ..+++++.|||++. .+.+++ ..++++|
T Consensus 196 ~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~-i~~~ik~~~~~~~G 274 (600)
T PRK05433 196 ALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGY-IIAGIKDVRDARVG 274 (600)
T ss_pred EEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEE-EecccccccccCCC
Confidence 9999988 578999999999999999999999999999999999875 57899999999554 455553 3679999
Q ss_pred eEEecCCCC
Q 011837 351 FVLSSVAKP 359 (476)
Q Consensus 351 ~vl~~~~~~ 359 (476)
|+|++.+.+
T Consensus 275 dtl~~~~~~ 283 (600)
T PRK05433 275 DTITLAKNP 283 (600)
T ss_pred CEEECCCCc
Confidence 999987643
No 40
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.1e-38 Score=332.46 Aligned_cols=267 Identities=22% Similarity=0.387 Sum_probs=221.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
.++||+++||+|||||||+++|++.+|.++.+.. ..+++|+.++|+++|+|++.....+.+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREM----------------REQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccc----------------cccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 5799999999999999999999999998875421 2467899999999999999988777663
Q ss_pred ---CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ---~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
.+.++|||||||.+|...+.++++.+|++|||+|+++|.. .|+.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~-------~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIE-------AQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 2789999999999999999999999999999999999873 6899999888888998 8899999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
. .++..+++...+ ++. ...++++||++|.|+.++ |..+++.+|.|..+.++|+++.
T Consensus 138 --~---~~~~~~el~~~l---g~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 --D---PERVKKEIEEVI---GLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred --C---HHHHHHHHHHHh---CCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 223334444332 332 125899999999999984 3334567888888889999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECC---eeeeecCCCCeEEEEEeccC-ccCceeeeE
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 352 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~v 352 (476)
|.+++ +..|.+++|||.+|+|+.||.|.+.|++...+|++|..++ .+++++.||| +++.+.+++ ..++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 99998 5789999999999999999999999999999999998764 7889999999 555566664 367999999
Q ss_pred EecCCCC
Q 011837 353 LSSVAKP 359 (476)
Q Consensus 353 l~~~~~~ 359 (476)
|++++++
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987643
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=6.6e-38 Score=291.59 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=188.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.+..+.+.+++.+....++.++.+++++|..++|+++|+|++.....+++.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999999999999988888888788888888888999999999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|+|||||.+|...+..++..+|++|+|+|+..+.. .++++++.++...++|++|+|+||||+ .++.++.++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999998864 588888888888888778889999999 556677788
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCC
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 267 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~ 267 (476)
.+..+++.+++.+++. ..+++|+||++|.|+.+.+. .++||.|+||+++|+.+++|
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8889999998888864 46799999999999998764 59999999999999999876
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.4e-35 Score=271.85 Aligned_cols=192 Identities=32% Similarity=0.493 Sum_probs=165.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+++||+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....|+++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 368999999999999999999987531 22333222235789999999999999999999999999
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
+++|+|||||.+|..++.++++.+|++++|||+.+|.. .|+++|+..+..+++|++|+|+||||+ .+ .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~-~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-------PQTREHLLLARQVGVPYIVVFLNKADM--VD-DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCcEEEEEeCCCC--CC-cHH
Confidence 99999999999999999999999999999999999863 799999999999999888899999999 42 456
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCC-cchHHHHhhccCC
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 266 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~-g~~l~~~l~~i~~ 266 (476)
.++.+.+++..+++.+|++. .+++++|+||++|.|..+ .++||+ +++|+++|+.+.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~-~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDG-DNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhcccc-cCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 77788899999999999863 478999999999999765 389997 7999999997643
No 43
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=5.9e-34 Score=309.62 Aligned_cols=289 Identities=22% Similarity=0.345 Sum_probs=221.8
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
..+..+++||+++||+|||||||+++|++.+|.++.+. .| .++++|+.++|++||+|++.+...+
T Consensus 14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~ 78 (731)
T PRK07560 14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSM 78 (731)
T ss_pred hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEE
Confidence 34456789999999999999999999999999887631 12 2567999999999999999987766
Q ss_pred Ee----CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 119 ET----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 119 ~~----~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.| .++.++|+|||||.+|..++.++++.+|++|+|||+..|+. .|++.++..+...++| .|+++||||
T Consensus 79 ~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~-------~~t~~~~~~~~~~~~~-~iv~iNK~D 150 (731)
T PRK07560 79 VHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVM-------PQTETVLRQALRERVK-PVLFINKVD 150 (731)
T ss_pred EEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCC-------ccHHHHHHHHHHcCCC-eEEEEECch
Confidence 55 47889999999999999999999999999999999999973 7999999999999998 688999999
Q ss_pred CCCcC------ccHHHHHHHHHHHHHHHHhcc---------CCcCCCeeEEeeeccccccccccc--cc-----------
Q 011837 195 DHTVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTRV--DK----------- 246 (476)
Q Consensus 195 l~~~~------~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~~ipvSa~~g~~i~~~~--~~----------- 246 (476)
+..++ ..++++.++.+++..++..+. +.+. +-.+++.|++.++++.... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~ 229 (731)
T PRK07560 151 RLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYY 229 (731)
T ss_pred hhcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccccceeHHHHHHhCCCHHHHHHHH
Confidence 86433 234556666666666665442 1111 2246678998887765100 00
Q ss_pred ------CC---CCCCCcchHHHHh-hccCCCCC-------------------------CCCCCeEEEEEEEE--ccCCeE
Q 011837 247 ------SL---CPWWNGPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTV 289 (476)
Q Consensus 247 ------~~---~~w~~g~~l~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~--~~~G~v 289 (476)
.+ +|.. ..|++.+ +.+|.|.. +++.|+.+.|.+++ +..|.+
T Consensus 230 ~~~~~~~l~~~~Pv~--~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v 307 (731)
T PRK07560 230 EKGKQKELAEKAPLH--EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV 307 (731)
T ss_pred hcCCHHHHHhhccch--hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE
Confidence 00 0110 1244433 34666631 33568888888887 467999
Q ss_pred EEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 290 VMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 290 ~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++||+||+|+.||.|++.+.+...+|+.|+.. ..++++|.||+++++ .|++ ++.+|++|+.+.
T Consensus 308 a~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 308 ATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 999999999999999999998888899999765 578999999999996 4553 477999998765
No 44
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.9e-33 Score=300.75 Aligned_cols=281 Identities=22% Similarity=0.268 Sum_probs=208.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
...++||+|+||+|+|||||+++|++.+|.+... |+. ...++++|+.++|+++|+|++.....+.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------ccc-cCCcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 4568999999999999999999999999876431 111 123678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+++++|+|||||.+|..++.++++.+|++|+||||..|+. .|+++++..+..+++| .|+++||||+..++
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~-------~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVE-------PQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999974 7999999999999999 67899999996443
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc-cccccc------------------------------------
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRV------------------------------------ 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~~------------------------------------ 244 (476)
+.+..+++++.+... ....++|+|+..+. |+.++.
T Consensus 144 ---~~~~~~~i~~~l~~~-----~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (693)
T PRK00007 144 ---FYRVVEQIKDRLGAN-----PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKL 215 (693)
T ss_pred ---HHHHHHHHHHHhCCC-----eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHH
Confidence 333444444333221 11234444444430 000000
Q ss_pred -----------------------------------ccCCCCCCCc--------chHHH-HhhccCCCCC-----------
Q 011837 245 -----------------------------------DKSLCPWWNG--------PCLFE-ALDRIEITPR----------- 269 (476)
Q Consensus 245 -----------------------------------~~~~~~w~~g--------~~l~~-~l~~i~~~~~----------- 269 (476)
....+|.+.| ..|++ ++..+|.|..
T Consensus 216 ~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 295 (693)
T PRK00007 216 IEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 (693)
T ss_pred HHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCc
Confidence 0011122211 12444 3445666531
Q ss_pred ---------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCe
Q 011837 270 ---------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGEN 334 (476)
Q Consensus 270 ---------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~ 334 (476)
+++.|+...|..+. +..|.+.++||+||+|+.||.|+....++..+|.+|... ..++++|.|||+
T Consensus 296 ~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI 375 (693)
T PRK00007 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI 375 (693)
T ss_pred cccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE
Confidence 23568888999887 356999999999999999999987666667788888764 578999999999
Q ss_pred EEEEEeccCccCceeeeEEecCC
Q 011837 335 LRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 335 v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++ .|++ +++.|++|++++
T Consensus 376 ~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 376 AAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEE--eCCc--cCCcCCEeeCCC
Confidence 995 6654 478999998755
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=4.5e-33 Score=292.60 Aligned_cols=249 Identities=29% Similarity=0.441 Sum_probs=192.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++||+|||||||+++|.. +.+ .....+|+|++.+...+.+.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~--~~v-----------------------------~~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRK--TKV-----------------------------AQGEAGGITQHIGAYHVENE 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--CCc-----------------------------ccccCCceeecceEEEEEEC
Confidence 34568999999999999999999842 111 11124689999888888886
Q ss_pred Ce-EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 122 TT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~~-~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+. .++|||||||++|...+.++++.+|+++||+|+++|.. +||.+|+..+...++| +|+++||+|++..+
T Consensus 133 ~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~- 203 (587)
T TIGR00487 133 DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEAN- 203 (587)
T ss_pred CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCC-
Confidence 55 89999999999999999999999999999999999874 7999999999999999 89999999995443
Q ss_pred cHHHHHHHHHHHHHHHHhccCCc---CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~ 277 (476)
.+ ++.+.+. ..++.+ ..+.+++|+||++|.|+.++.+. +. .+..+.....+++.|+++
T Consensus 204 -~e---~v~~~L~----~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~~ 264 (587)
T TIGR00487 204 -PD---RVKQELS----EYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQASG 264 (587)
T ss_pred -HH---HHHHHHH----HhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCcee
Confidence 22 2223222 222110 12468999999999999986432 11 112222333455689999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEE-CCeeeeecCCCCeEEEEEeccCccCc-eeeeEE
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDI-LSGFVL 353 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl 353 (476)
.|.+++ ++.|++++|+|.+|+|++||.|.++|. ..+|++|+. ++..+++|.||+.|.+ .|++. + ..|+.+
T Consensus 265 ~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i--~Gl~~--~p~aGd~~ 338 (587)
T TIGR00487 265 VVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEI--LGLSD--VPAAGDEF 338 (587)
T ss_pred EEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEE--eCCCC--CCCCCCEE
Confidence 999998 688999999999999999999999885 568999998 5789999999999985 35542 3 678888
Q ss_pred ec
Q 011837 354 SS 355 (476)
Q Consensus 354 ~~ 355 (476)
.-
T Consensus 339 ~~ 340 (587)
T TIGR00487 339 IV 340 (587)
T ss_pred EE
Confidence 73
No 46
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.3e-33 Score=299.80 Aligned_cols=250 Identities=28% Similarity=0.429 Sum_probs=195.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++||+|||||||+++|.. +.+. ....+|+|++.+...+.++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEEC
Confidence 56779999999999999999999842 1111 1124689999998899999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||++|..++.++++.+|++|||||+++|.. +||++|+..+...++| +||++||||++. ++
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~--a~ 405 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPG--AN 405 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECccccc--cC
Confidence 9999999999999999999999999999999999999974 7999999999999999 999999999943 33
Q ss_pred HHHHHHHHHHHHH---HHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEE
Q 011837 202 KERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 278 (476)
Q Consensus 202 ~~~~~~~~~~l~~---~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~ 278 (476)
.+ .+..++.. +...++ .+++++|+||++|.|+.++++. +....+.+. ...+.+.|++..
T Consensus 406 ~e---~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e~~~-l~~~~~~~~~g~ 467 (787)
T PRK05306 406 PD---RVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAEVLE-LKANPDRPARGT 467 (787)
T ss_pred HH---HHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhhhhh-cccCCCCCcEEE
Confidence 22 23333322 112222 2478999999999999986442 111111111 234567789999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCc-eeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~ 354 (476)
|.+++ ++.|.+++++|.+|+|+.||.|++++ ...+|++|+.. +.++++|.||+.|.+ .|++. + ..||.|+
T Consensus 468 V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I--~gl~~--~p~~Gd~l~ 541 (787)
T PRK05306 468 VIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEI--LGLSG--VPQAGDEFV 541 (787)
T ss_pred EEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEE--eCCCC--CCCCCCEEE
Confidence 99887 67899999999999999999999965 56899999985 779999999999995 35533 4 6899998
Q ss_pred cC
Q 011837 355 SV 356 (476)
Q Consensus 355 ~~ 356 (476)
..
T Consensus 542 ~~ 543 (787)
T PRK05306 542 VV 543 (787)
T ss_pred Ec
Confidence 43
No 47
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-33 Score=292.78 Aligned_cols=272 Identities=24% Similarity=0.310 Sum_probs=210.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.+||+|+||+|||||||+++||+.+|.+...+ +....+..||+.+.|++||+||..+...+.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G-------------~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG-------------EVHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc-------------cccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 56789999999999999999999999999887521 11223668999999999999999999999999
Q ss_pred C-eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 122 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~-~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+ +.|+|||||||.||..++.++++.+|+||+|+||..|+. +||+..++.+...++| .|+++||||+..++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~- 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGAD- 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccC-
Confidence 6 999999999999999999999999999999999999985 8999999999999999 56899999997654
Q ss_pred cHHHHHHHHHHHHHHHHhc----cCCc-----------------------------------------------------
Q 011837 201 SKERYDEIESKMTPFLKAS----GYNV----------------------------------------------------- 223 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~----~~~~----------------------------------------------------- 223 (476)
|....+++...|... +...
T Consensus 145 ----~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 145 ----FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred ----hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 333444444433321 0000
Q ss_pred -----------------------------CCCeeEEeeecccccccccccccCCCCCCCcchHHH-HhhccCCCCC----
Q 011837 224 -----------------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR---- 269 (476)
Q Consensus 224 -----------------------------~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~-~l~~i~~~~~---- 269 (476)
....|.++-||.++.|+.. |++ +++.+|.|..
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~--------------lLdav~~~lPsP~e~~~~ 286 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVPPI 286 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHH--------------HHHHHHHHCCChhhcccc
Confidence 0011222222222222222 333 3445666511
Q ss_pred ----------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeee
Q 011837 270 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 327 (476)
Q Consensus 270 ----------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~ 327 (476)
+.+.|+.+.+..+. +..|.+.++||+||+|+.||.++....+.+.+|..|... +.+++
T Consensus 287 ~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~ 366 (697)
T COG0480 287 KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVD 366 (697)
T ss_pred cccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecc
Confidence 23678988888877 457898889999999999999999888888899998775 57899
Q ss_pred ecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 328 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 328 ~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
++.||++++ +.|++. ...|+++|+.+
T Consensus 367 ~~~AG~I~a--~~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 367 EVPAGDIVA--LVGLKD--ATTGDTLCDEN 392 (697)
T ss_pred cccCccEEE--EEcccc--cccCCeeecCC
Confidence 999999999 566654 68999999776
No 48
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=9.9e-33 Score=298.61 Aligned_cols=272 Identities=21% Similarity=0.252 Sum_probs=208.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
...++||+|+||+|||||||+++|++.+|.+... |+- ....+++|+.++|++||+|++.....++++
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~------------~~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWK 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCChhHhhcCCCccceeEEEEEC
Confidence 4568999999999999999999999988876431 110 123678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+++++|+|||||.+|..++.++++.+|++|+|||+.+|.. .|+++++..+...++| +|+++||||+...+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~-------~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVE-------PQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999873 7999999999999999 67999999995432
Q ss_pred HHHHHHHHHHHHHHHHhccCC-----------------------------------------------------------
Q 011837 202 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 222 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~----------------------------------------------------------- 222 (476)
+.++.++++..+....+.
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 218 (691)
T PRK12739 142 ---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA 218 (691)
T ss_pred ---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 334444444443221000
Q ss_pred ------------------------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHH-HhhccCCCCC--
Q 011837 223 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR-- 269 (476)
Q Consensus 223 ------------------------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~-~l~~i~~~~~-- 269 (476)
...-+|++..||+++.|+.. |++ ++..+|.|..
T Consensus 219 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------LLd~I~~~lPsP~~~~ 284 (691)
T PRK12739 219 EVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQP--------------LLDAVVDYLPSPLDVP 284 (691)
T ss_pred hcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH--------------HHHHHHHHCCChhhcc
Confidence 00112333334444444443 444 3344666531
Q ss_pred -----------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceee
Q 011837 270 -----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRV 326 (476)
Q Consensus 270 -----------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v 326 (476)
+++.|+...|..++ +..|.+.++||+||+|+.||.|+....+...+|.+|... ..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 364 (691)
T PRK12739 285 AIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEI 364 (691)
T ss_pred ccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccc
Confidence 34678999999887 357999999999999999999987766777788887654 5789
Q ss_pred eecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 327 RHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 327 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++.|||++++ .|++ +++.|++|++..
T Consensus 365 ~~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 365 KEVYAGDIAAA--VGLK--DTTTGDTLCDEK 391 (691)
T ss_pred cccCCCCEEEE--eCCC--cccCCCEEeCCC
Confidence 99999999995 4654 378999998765
No 49
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.4e-32 Score=284.40 Aligned_cols=276 Identities=19% Similarity=0.226 Sum_probs=211.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...+||+|+||+|||||||+++|++..|.++..+.. .+++ ......+|+.+.|++||+|+......+++.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 467999999999999999999999999987654210 0111 0112347999999999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|+|||+..|+. .++++++..+...++| +++++||||+..++.
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~-- 148 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-------PQTRKLMEVCRLRDTP-IFTFINKLDRDGREP-- 148 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCcccccCH--
Confidence 999999999999999999999999999999999999863 6899999999999999 889999999965442
Q ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Q 011837 203 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 219 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~--------------------------------------------------------------- 219 (476)
.++.++++..+...
T Consensus 149 ---~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~ 225 (526)
T PRK00741 149 ---LELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLR 225 (526)
T ss_pred ---HHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHH
Confidence 12222222222110
Q ss_pred ----------------cCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCC---------CCCC
Q 011837 220 ----------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGP 274 (476)
Q Consensus 220 ----------------~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~---------~~~p 274 (476)
.+....-+|++..||+++.|+..+ |..+++.+|.|... .+.+
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~P~P~~~~~~~~~~~~~~~~ 292 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEF-------------LDAFVEWAPAPQPRQTDEREVEPTEEK 292 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHH-------------HHHHHHHCCCCCcccccceeecCCCCc
Confidence 000011257888888888888874 33345556766421 2346
Q ss_pred eEEEEEEEE-----ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCcc
Q 011837 275 FRMPIIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~v~~~~-----~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~ 345 (476)
+...|+.+. +.+|++++.||.||+|+.|+.|+....++..++..++.. +.++++|.|||+++ +.++ .
T Consensus 293 ~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~--v~~l--~ 368 (526)
T PRK00741 293 FSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIG--LHNH--G 368 (526)
T ss_pred eEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEE--EECC--C
Confidence 777777775 357999999999999999999999888888888887654 67899999999999 4544 4
Q ss_pred CceeeeEEecCC
Q 011837 346 DILSGFVLSSVA 357 (476)
Q Consensus 346 ~i~~G~vl~~~~ 357 (476)
+++.||+|+..+
T Consensus 369 ~~~~GDTL~~~~ 380 (526)
T PRK00741 369 TIQIGDTFTQGE 380 (526)
T ss_pred CCccCCCccCCC
Confidence 589999998755
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.6e-31 Score=289.45 Aligned_cols=282 Identities=22% Similarity=0.279 Sum_probs=206.6
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+++||+|+||+|||||||+++|++.+|.+...+ + ...+++.+|+.+.|+++|+|++.....+++
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~------------~-~~~g~~~~D~~~~e~~rgiti~~~~~~~~~ 72 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG------------E-VHDGAATMDWMEQEKERGITITSAATTVFW 72 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccc------------c-ccCCccccCCCHHHHhcCCCEecceEEEEE
Confidence 345689999999999999999999999888764311 0 112468899999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+++++|+|||||.+|..++..+++.+|++|+|||+..|.. .|+++++..+...++| +++++||||+..++
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~-------~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~- 143 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQ-------PQSETVWRQANRYEVP-RIAFVNKMDKTGAN- 143 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCC-EEEEEECCCCCCCC-
Confidence 99999999999999999999999999999999999999873 6899999999999999 67899999995443
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc-ccccc------------------------------------
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR------------------------------------ 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~------------------------------------ 243 (476)
+.+..+++...+.... ...++|+|+..+. ++.++
T Consensus 144 ----~~~~~~~i~~~l~~~~-----~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 214 (689)
T TIGR00484 144 ----FLRVVNQIKQRLGANA-----VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENL 214 (689)
T ss_pred ----HHHHHHHHHHHhCCCc-----eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHH
Confidence 3334444444332211 1123444443332 10000
Q ss_pred ----------------------------------cccCCCCCCCc--------chHHHH-hhccCCCCC-----------
Q 011837 244 ----------------------------------VDKSLCPWWNG--------PCLFEA-LDRIEITPR----------- 269 (476)
Q Consensus 244 ----------------------------------~~~~~~~w~~g--------~~l~~~-l~~i~~~~~----------- 269 (476)
.....+|.+.| ..|++. +..+|.|..
T Consensus 215 ~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 294 (689)
T TIGR00484 215 VEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDT 294 (689)
T ss_pred HHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCC
Confidence 00011122211 124443 344666531
Q ss_pred --------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeE
Q 011837 270 --------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENL 335 (476)
Q Consensus 270 --------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v 335 (476)
+++.|+.+.|.++. +..|.+.++||+||+|+.||.|+....+...+|..|... ..+++++.|||++
T Consensus 295 ~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~ 374 (689)
T TIGR00484 295 EKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDIC 374 (689)
T ss_pred CceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEE
Confidence 23568888888887 467999999999999999999997666666677777654 4689999999999
Q ss_pred EEEEeccCccCceeeeEEecCC
Q 011837 336 RIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 336 ~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
++ .|++ +++.|++|+++.
T Consensus 375 ~i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 375 AA--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred EE--cCCC--CCCCCCEEeCCC
Confidence 95 5654 468999998765
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=1.6e-32 Score=251.50 Aligned_cols=175 Identities=36% Similarity=0.593 Sum_probs=153.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE--e
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~ 120 (476)
|+++||+++||+|||||||+++|++..+.+.+.+..+. ....+|..+.|+++|+|++.....+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEET-------------KNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHH-------------HHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhcccccccccccc-------------ccccccccchhhhcccccccccccccccc
Confidence 57899999999999999999999999998887654331 12347888999999999999999999 9
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.++.++|+|||||.+|.+++.++++.+|++|+|||+.+|.. .|+++|+..+..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~-------~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQ-------PQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBST-------HHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccc-------cccccccccccccccc-eEEeeeeccch----
Confidence 99999999999999999999999999999999999999974 7999999999999999 89999999993
Q ss_pred cHHHHHHHHHHHH-HHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.++++..+++. .+++..++.....+|++|+||++|+|+.++
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 567788888888 566777775223689999999999999984
No 52
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.9e-31 Score=277.81 Aligned_cols=276 Identities=19% Similarity=0.210 Sum_probs=207.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.+||+++||+|||||||+++||+..|.+...+.. .++.+ .....+|+.+.|++||+|+......+++.
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v--------~~~g~-~~~t~~D~~~~E~~rgisi~~~~~~~~~~ 78 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAV--------KGRGS-QRHAKSDWMEMEKQRGISITTSVMQFPYR 78 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCcccccee--------ccccc-cccccCCCCHHHHhcCCcEEEEEEEEeeC
Confidence 3568999999999999999999999999987653210 01111 11245899999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|+|||||.+|...+.++++.+|++|+|||+..|+. .+++.++..+...++| +|+++||+|+...+
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~~t~~l~~~~~~~~~P-iivviNKiD~~~~~-- 148 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-------TRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD-- 148 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECccccCCC--
Confidence 9999999999999999999999999999999999998863 6889999988888998 88999999995432
Q ss_pred HHHHHHHHHHHHHHHHhccCC-----------------------------------------------------------
Q 011837 202 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 222 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~----------------------------------------------------------- 222 (476)
++++.++++..+....+.
T Consensus 149 ---~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 225 (527)
T TIGR00503 149 ---PLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQL 225 (527)
T ss_pred ---HHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHH
Confidence 223333343333211000
Q ss_pred --------------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHH-HhhccCCCCCC---------CC
Q 011837 223 --------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRD---------PN 272 (476)
Q Consensus 223 --------------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~-~l~~i~~~~~~---------~~ 272 (476)
...-+|+++.||+++.|+.. |++ +++.+|.|... .+
T Consensus 226 ~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~--------------LLd~i~~~~PsP~~~~~~~~~~~~~~ 291 (527)
T TIGR00503 226 RDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH--------------FLDGLLQWAPKPEARQSDTRTVEPTE 291 (527)
T ss_pred HHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH--------------HHHHHHHHCCCCccccCCceecCCCC
Confidence 01123445555655555555 344 44556766422 23
Q ss_pred CCeEEEEEEEEc-----cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccC
Q 011837 273 GPFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIE 343 (476)
Q Consensus 273 ~p~~~~v~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~ 343 (476)
.++...|+.+.. .+|++++.||.||+|+.|++|+....+++.++..++.. +.++++|.|||+++ +.++
T Consensus 292 ~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~--~~~~- 368 (527)
T TIGR00503 292 EKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIG--LHNH- 368 (527)
T ss_pred CCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEE--EECC-
Confidence 567777776642 47999999999999999999999888888888888654 67899999999998 4544
Q ss_pred ccCceeeeEEecCC
Q 011837 344 EEDILSGFVLSSVA 357 (476)
Q Consensus 344 ~~~i~~G~vl~~~~ 357 (476)
.+++.||+|++..
T Consensus 369 -~~~~~GDtl~~~~ 381 (527)
T TIGR00503 369 -GTIQIGDTFTQGE 381 (527)
T ss_pred -CCcccCCEecCCC
Confidence 4589999998744
No 53
>PRK13351 elongation factor G; Reviewed
Probab=99.98 E-value=8.5e-31 Score=284.38 Aligned_cols=273 Identities=22% Similarity=0.297 Sum_probs=213.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
...++||+++||+|+|||||+++|++.+|.+..... .. ...+.+|+.+.|+++|+|+......+.+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v~------~~~~~~d~~~~e~~r~~ti~~~~~~~~~~ 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------VE------DGTTVTDWMPQEQERGITIESAATSCDWD 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------cc------CCcccCCCCHHHHhcCCCcccceEEEEEC
Confidence 346799999999999999999999998887654310 00 12457899999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||.+|...+..+++.+|++++|+|++.+.. .++.+++..+...++| +++++||+|+..++
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-- 141 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-------PQTETVWRQADRYGIP-RLIFINKMDRVGAD-- 141 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999999863 5888899999999998 77899999996543
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Q 011837 202 KERYDEIESKMTPFLKAS-------------------------------------------------------------- 219 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~-------------------------------------------------------------- 219 (476)
+.+..++++..+...
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (687)
T PRK13351 142 ---LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALA 218 (687)
T ss_pred ---HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 223333333322210
Q ss_pred ------------c--CC-------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCC---
Q 011837 220 ------------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 269 (476)
Q Consensus 220 ------------~--~~-------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~--- 269 (476)
+ +. ...-+|++..||++|.|+..+ |..++..+|.|..
T Consensus 219 ~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~L-------------Ld~I~~~lPsP~~~~~ 285 (687)
T PRK13351 219 EFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPL-------------LDAVVDYLPSPLEVPP 285 (687)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHH-------------HHHHHHHCCChhhccc
Confidence 0 00 011356777788888888874 2234455666532
Q ss_pred ---------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011837 270 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 270 ---------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
+++.|+.+.|.+++ +..|.++++||+||+|+.||+|++.+.+...+|..|... ..++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 365 (687)
T PRK13351 286 PRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDR 365 (687)
T ss_pred ccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCc
Confidence 34678999999887 467999999999999999999999988877788887654 578999
Q ss_pred cCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 329 AGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
|.|||+++ +.|++ ++..|++|++..
T Consensus 366 ~~aGdI~~--i~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 366 AKAGDIVA--VAGLK--ELETGDTLHDSA 390 (687)
T ss_pred cCCCCEEE--EECcc--cCccCCEEeCCC
Confidence 99999998 56664 467899998765
No 54
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.98 E-value=4.6e-31 Score=280.84 Aligned_cols=251 Identities=25% Similarity=0.377 Sum_probs=188.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
..+.++|+++||+|||||||+++|+.... .....+|+|++.+...+.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~-------------------------------~~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQI-------------------------------AQKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccC-------------------------------ccccCCccccccceEEEEEE
Confidence 45678999999999999999999853221 1123467887776665554
Q ss_pred ---CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 121 ---ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ---~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
.+..++|||||||+.|..++.+++..+|++|||||+++|.. .||.+++..+...++| +||++||+|++.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~~ 361 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKAN 361 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCccc
Confidence 35899999999999999999999999999999999999874 7999999999999998 899999999954
Q ss_pred cCccHHHHHHHHHHHHHH---HHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCC
Q 011837 198 VNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGP 274 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~---l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p 274 (476)
. + ++++.+++..+ ...++ ..++++++||++|.|+.++.+. +....+ +.....+++.|
T Consensus 362 ~--~---~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l~e-~~~lk~~~~~~ 421 (742)
T CHL00189 362 A--N---TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLLAE-IEDLKADPTQL 421 (742)
T ss_pred c--C---HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhhhh-hhcccCCCCCC
Confidence 3 2 23333433322 12222 2468999999999999986432 211111 11222344567
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
+...+.+.. ++.|++++|+|.+|+|+.||.|+++| ...+|++|... +.++.+|.||+.|.+ .|++ .....|+
T Consensus 422 ~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd 496 (742)
T CHL00189 422 AQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGE 496 (742)
T ss_pred ceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCC
Confidence 888887776 67899999999999999999999987 45799999854 789999999999984 5553 2355788
Q ss_pred EEecC
Q 011837 352 VLSSV 356 (476)
Q Consensus 352 vl~~~ 356 (476)
.+.-.
T Consensus 497 ~l~v~ 501 (742)
T CHL00189 497 HFQVF 501 (742)
T ss_pred EEEEe
Confidence 87643
No 55
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-31 Score=261.08 Aligned_cols=256 Identities=28% Similarity=0.412 Sum_probs=197.4
Q ss_pred ccccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee
Q 011837 35 QQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG 114 (476)
Q Consensus 35 ~~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~ 114 (476)
+.+....+.+.+.|.|+||||||||||+..|.. ..+.. ....|||...+
T Consensus 143 ~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRk--s~VAA-----------------------------~E~GGITQhIG 191 (683)
T KOG1145|consen 143 EADPKLLEPRPPVVTIMGHVDHGKTTLLDALRK--SSVAA-----------------------------GEAGGITQHIG 191 (683)
T ss_pred ccCHhhcCCCCCeEEEeecccCChhhHHHHHhh--Cceeh-----------------------------hhcCCccceec
Confidence 345555566789999999999999999999832 11111 12468999998
Q ss_pred eEEEEe-CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 115 RAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 115 ~~~~~~-~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
.+.... ++.+++|+|||||.-|..+..+|+..+|.++|||.|++|++ +||.|.+..++..++| +||++||+
T Consensus 192 AF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAinKi 263 (683)
T KOG1145|consen 192 AFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAINKI 263 (683)
T ss_pred eEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEEecc
Confidence 876554 67899999999999999999999999999999999999997 7999999999999999 99999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHH---HHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCC
Q 011837 194 DDHTVNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD 270 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~---l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~ 270 (476)
|.+.++ .+.+++++... +..+| .+++++|+||++|.|+..+.+..+ ++.+.++ + ..+
T Consensus 264 Dkp~a~-----pekv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~eail-------l~Ae~md-L---kA~ 323 (683)
T KOG1145|consen 264 DKPGAN-----PEKVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEAIL-------LLAEVMD-L---KAD 323 (683)
T ss_pred CCCCCC-----HHHHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHHHH-------HHHHHhh-c---ccC
Confidence 997664 22333333321 33343 578999999999999998644300 0111222 2 234
Q ss_pred CCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCc
Q 011837 271 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI 347 (476)
Q Consensus 271 ~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i 347 (476)
+..|+.-.|.+.. +++|.+++..|..|+|+.|+.+.. +...++|+.+..+ ++++++|.|++.|.+ -|.+. --
T Consensus 324 p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~--G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~Gwkd-lP 398 (683)
T KOG1145|consen 324 PKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA--GKSWCKVRALFDHNGKPIDEATPSQPVEV--LGWKD-LP 398 (683)
T ss_pred CCCCceEEEEEeeecCCccceeEEEEeccccccccEEEE--echhhhhhhhhhcCCCCccccCCCCceEe--ecccC-CC
Confidence 6788888888776 899999999999999999999998 5667899999887 789999999999984 45442 12
Q ss_pred eeeeEEe
Q 011837 348 LSGFVLS 354 (476)
Q Consensus 348 ~~G~vl~ 354 (476)
..||.+.
T Consensus 399 ~aGD~vl 405 (683)
T KOG1145|consen 399 IAGDEVL 405 (683)
T ss_pred CCCceEE
Confidence 3566554
No 56
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=7.4e-31 Score=284.65 Aligned_cols=290 Identities=21% Similarity=0.323 Sum_probs=210.7
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE--
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH-- 117 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~-- 117 (476)
.+.+..+||+++||+|||||||+++|++.+|.++.. ..| -.+.+|+.++|+++|+|++.....
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~~-----~~~~~d~~~~e~~rg~Ti~~~~~~~~ 78 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE----------LAG-----QQLYLDFDEQEQERGITINAANVSMV 78 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh----------cCC-----ceeecCCCHHHHhhcchhhcccceeE
Confidence 345568999999999999999999999999988653 112 135689999999999999987654
Q ss_pred --EEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 118 --FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 118 --~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
+++.++.++|||||||.+|...+..+++.+|++|+|+|+..|+. .++++++..+...++| +|+++||||+
T Consensus 79 ~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~ 150 (720)
T TIGR00490 79 HEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVM-------PQTETVLRQALKENVK-PVLFINKVDR 150 (720)
T ss_pred EeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCC-------ccHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 67788999999999999999999999999999999999999873 7999999998889998 5799999999
Q ss_pred CCcC------ccHHHHHHHHHHHHHHHHhcc---------CCcCCCeeEEeeecccccccc------------ccc---c
Q 011837 196 HTVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMK------------TRV---D 245 (476)
Q Consensus 196 ~~~~------~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~~ipvSa~~g~~i~------------~~~---~ 245 (476)
...+ ..+++|..+...+...+.... +.+ .+......|++.+++.. ++. .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (720)
T TIGR00490 151 LINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRV-EDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCK 229 (720)
T ss_pred ccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEech-hhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHH
Confidence 6433 223455555555555553320 000 00112333444442221 000 0
Q ss_pred -c---CCCCCCC-cchHHHHh-hccCCCCC-------------------------CCCCCeEEEEEEEE--ccCCeEEEE
Q 011837 246 -K---SLCPWWN-GPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMG 292 (476)
Q Consensus 246 -~---~~~~w~~-g~~l~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~--~~~G~v~~g 292 (476)
. .+..|+. -..|++.+ ..+|.|.. +.+.|+...|.+++ ++.|++++|
T Consensus 230 ~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~ 309 (720)
T TIGR00490 230 EDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVG 309 (720)
T ss_pred hccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEE
Confidence 0 0001110 01234433 33565531 23568888888886 578999999
Q ss_pred EEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 293 KVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 293 ~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
||+||+|++||.|++.+.+...+|+.|+.. ..++++|.||++|++ .+++ ++.+||+|++++
T Consensus 310 RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 310 RLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred EEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 999999999999999999999999999775 468999999999985 5554 578999998765
No 57
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-31 Score=257.58 Aligned_cols=279 Identities=22% Similarity=0.274 Sum_probs=204.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++++|+.|+|||||||.+.||...|+|...+.-+ ||.+. -....|+..-|++|||++.++.-.|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~-~~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSG-KHAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCC-cccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 3568999999999999999999999888887654222 11111 12346888999999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|+|||||+||...+.+.+..+|.||.||||..|+ ++||+..+..|+..++| ++-+|||||+...+ .-
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~ 151 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PL 151 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hH
Confidence 99999999999999999999999999999999999998 48999999999999999 99999999996543 22
Q ss_pred HHHHHHHHHHHHHHHhccCCcC----------------------------------------------------------
Q 011837 203 ERYDEIESKMTPFLKASGYNVK---------------------------------------------------------- 224 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~---------------------------------------------------------- 224 (476)
+-++++.+.+.--...+.|+..
T Consensus 152 ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E 231 (528)
T COG4108 152 ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE 231 (528)
T ss_pred HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH
Confidence 3334443333222222222200
Q ss_pred -----------------CCeeEEeeecccccccccccccCCCCCCCcchHHH-HhhccCCCCC------------CCCCC
Q 011837 225 -----------------KDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPR------------DPNGP 274 (476)
Q Consensus 225 -----------------~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~-~l~~i~~~~~------------~~~~p 274 (476)
...|++.-||+.+.|+.. |++ +++--|+|.. +.-..
T Consensus 232 L~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~--------------~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsG 297 (528)
T COG4108 232 LVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDH--------------FLDALVDWAPSPRARQADTREVEPTEDKFSG 297 (528)
T ss_pred HHHhhccccCHHHHhcCCccceEehhhhhccCHHH--------------HHHHHHhhCCCCCcccCCcCcccCCCCccce
Confidence 001333334444444433 333 3333344421 11123
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCce
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~ 348 (476)
|.|-|+..+ +.+.++++.||-||.+..|+++.....++.+++..-+.+ ++.+++|.|||++||.-.|. ++
T Consensus 298 FVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~----~~ 373 (528)
T COG4108 298 FVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGT----IQ 373 (528)
T ss_pred EEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCc----ee
Confidence 445555444 468899999999999999999999999998888877654 78899999999999644443 88
Q ss_pred eeeEEecCC
Q 011837 349 SGFVLSSVA 357 (476)
Q Consensus 349 ~G~vl~~~~ 357 (476)
.||+++..+
T Consensus 374 IGDT~t~Ge 382 (528)
T COG4108 374 IGDTFTEGE 382 (528)
T ss_pred ecceeecCc
Confidence 899998654
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.9e-30 Score=257.42 Aligned_cols=234 Identities=28% Similarity=0.453 Sum_probs=183.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
.+.+-|+++||+|||||||++.+. ...+.. .-..|+|...+...+.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR--~t~Va~-----------------------------~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIR--KTNVAA-----------------------------GEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHh--cCcccc-----------------------------ccCCceeeEeeeEEEEecc
Confidence 356789999999999999999983 222221 124689999999999985
Q ss_pred --CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 122 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 --~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
...++|||||||+-|..+..+|.+.+|.++||||+++|++ +||.|-+.++++.++| +||++||||+++.+
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 4799999999999999999999999999999999999986 8999999999999999 99999999997554
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCc---CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 276 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~ 276 (476)
...+..++++ .|+.+ ..++.++|+||++|+|+.++.+. ++ .+.....-...++.+.+
T Consensus 124 -----p~~v~~el~~----~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~----------il-l~aev~elka~~~~~a~ 183 (509)
T COG0532 124 -----PDKVKQELQE----YGLVPEEWGGDVIFVPVSAKTGEGIDELLEL----------IL-LLAEVLELKANPEGPAR 183 (509)
T ss_pred -----HHHHHHHHHH----cCCCHhhcCCceEEEEeeccCCCCHHHHHHH----------HH-HHHHHHhhhcCCCCcce
Confidence 2333343333 34432 24689999999999999996432 11 11111122345567888
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEE
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 337 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l 337 (476)
-.+.++. ++.|.+++-.|..|+|+.||.+.++. ...+|+.+... ..+++.+.++..+.+
T Consensus 184 gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 184 GTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEEEEeccCCCceEEEEEecCeEecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEE
Confidence 8888876 78999999999999999999999954 45578887765 678888888866663
No 59
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=1e-29 Score=267.94 Aligned_cols=260 Identities=25% Similarity=0.364 Sum_probs=187.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.+.|+++||+|||||||+++|.... +.. ....++|.+.+...+.+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~-----------------------------~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTA--VAA-----------------------------KEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcc--ccc-----------------------------CCCCceEEeeceeecccc
Confidence 3456789999999999999999994221 100 011223333222211111
Q ss_pred ------------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC
Q 011837 122 ------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 183 (476)
Q Consensus 122 ------------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i 183 (476)
-..++|||||||++|...+.++++.+|+++||+|+++|.. +|+.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-------~qt~e~i~~~~~~~v 124 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-------PQTIEAINILKRRKT 124 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCC
Confidence 1137999999999999999999999999999999999863 799999999999999
Q ss_pred ceEEEEEEccCCCCcCcc------------------HHHHHHHHHHHHHHHHhccCCc---------CCCeeEEeeeccc
Q 011837 184 TKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 236 (476)
Q Consensus 184 ~~iIvviNK~Dl~~~~~~------------------~~~~~~~~~~l~~~l~~~~~~~---------~~~~~~ipvSa~~ 236 (476)
| +++++||+|+.. .|. ++.|++...++...|...|+.. ..+++++|+||++
T Consensus 125 p-iIvviNK~D~~~-~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 125 P-FVVAANKIDRIP-GWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred C-EEEEEECcCCch-hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 9 899999999842 343 3455566666666777777653 1468999999999
Q ss_pred ccccccccccCCCCCCCcchHHHHhhc-cCC-CCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCc
Q 011837 237 GLNMKTRVDKSLCPWWNGPCLFEALDR-IEI-TPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA 312 (476)
Q Consensus 237 g~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~-~~~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~ 312 (476)
|+|+.++.+. +...++. ++. -..+.+.|++++|.+++ ++.|++++|+|.+|+|++||.|.++|.+.
T Consensus 203 GeGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~ 272 (586)
T PRK04004 203 GEGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG 272 (586)
T ss_pred CCChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC
Confidence 9999986432 2222221 221 12456789999999998 78999999999999999999999999874
Q ss_pred --eEEEEEEEEC------------CeeeeecCCCCeEEEEEeccCccCceeeeEE
Q 011837 313 --QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 313 --~~~V~si~~~------------~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 353 (476)
.++|++|..+ ...+++|.|..-|-+...|++. +..|+-+
T Consensus 273 ~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~~ 325 (586)
T PRK04004 273 PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLED--ALAGSPL 325 (586)
T ss_pred cceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccc--cCCCCeE
Confidence 5799999875 2566677777766654345443 3455544
No 60
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=1.7e-29 Score=273.80 Aligned_cols=264 Identities=23% Similarity=0.307 Sum_probs=206.2
Q ss_pred EecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEEEeC
Q 011837 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 130 (476)
Q Consensus 51 vG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDt 130 (476)
+||+|||||||+++|++.+|.+.... +. -...+++|+...|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~------------~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG------------EV-EDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc------------cc-cCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999999876431 00 012368999999999999999999999999999999999
Q ss_pred CCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHH
Q 011837 131 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 210 (476)
Q Consensus 131 PGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~ 210 (476)
|||.+|...+..++..+|++++|+|+..+.. .++..++..+...++| +++++||+|+...+ +.++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~-----~~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGAD-----FFRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HHHHHH
Confidence 9999999999999999999999999998863 5888888889899998 77899999995433 222333
Q ss_pred HHHHHHHhc-----------------------------------------------------------------------
Q 011837 211 KMTPFLKAS----------------------------------------------------------------------- 219 (476)
Q Consensus 211 ~l~~~l~~~----------------------------------------------------------------------- 219 (476)
++++.+...
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 333222100
Q ss_pred --cC-------------CcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCC----------------
Q 011837 220 --GY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 268 (476)
Q Consensus 220 --~~-------------~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~---------------- 268 (476)
.+ .....+|++..||++|.|+..+ |..++..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRL-------------LDAVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHH-------------HHHHHHHCCChhhcccccCCCCcccccc
Confidence 00 0012357788899999999874 333445566663
Q ss_pred -CCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEec
Q 011837 269 -RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 341 (476)
Q Consensus 269 -~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~ 341 (476)
++++.|+.+.|.+++ +..|.++++||++|+|+.||+|++.+.+...+|..|... ..++++|.|||++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 244678999999987 457999999999999999999999988777777777643 5789999999999964 6
Q ss_pred cCccCceeeeEEecCC
Q 011837 342 IEEEDILSGFVLSSVA 357 (476)
Q Consensus 342 ~~~~~i~~G~vl~~~~ 357 (476)
++ .++.|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 54 489999998654
No 61
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=1.1e-29 Score=279.26 Aligned_cols=294 Identities=20% Similarity=0.304 Sum_probs=205.9
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
...+...++||+|+||+|||||||+++|++.+|.++... .| ..+++|..++|++||+|++.+...
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~ 76 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGIS 76 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeE
Confidence 334567789999999999999999999999999887531 11 346789999999999999988777
Q ss_pred EEeC----------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc
Q 011837 118 FETE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 181 (476)
Q Consensus 118 ~~~~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l 181 (476)
+.+. ++.++|+|||||.+|..++.++++.+|+||+||||.+|+. .||+.++..+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~ 149 (843)
T PLN00116 77 LYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGE 149 (843)
T ss_pred EEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHC
Confidence 7763 6789999999999999999999999999999999999984 7999999999999
Q ss_pred CCceEEEEEEccCCCCcCc--c----HHHHHHHHHHHHHHHHhccCCcCCCe-------eEEeeecccccccc-------
Q 011837 182 GVTKLLLVVNKMDDHTVNW--S----KERYDEIESKMTPFLKASGYNVKKDV-------QFLPISGLMGLNMK------- 241 (476)
Q Consensus 182 ~i~~iIvviNK~Dl~~~~~--~----~~~~~~~~~~l~~~l~~~~~~~~~~~-------~~ipvSa~~g~~i~------- 241 (476)
++| +|+++||||++..++ . ..+++++.++++.++..++-.....+ .++..|++.|+.+.
T Consensus 150 ~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~ 228 (843)
T PLN00116 150 RIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKM 228 (843)
T ss_pred CCC-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHH
Confidence 999 789999999963222 1 25677888888744433320000000 11222222211000
Q ss_pred -------------------------------------------------------------------ccc----------
Q 011837 242 -------------------------------------------------------------------TRV---------- 244 (476)
Q Consensus 242 -------------------------------------------------------------------~~~---------- 244 (476)
+..
T Consensus 229 y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~ 308 (843)
T PLN00116 229 YASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSD 308 (843)
T ss_pred HHHHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHH
Confidence 000
Q ss_pred ----------ccCCCCCCCc-chHHHHh-hccCCCCC-------------------------CCCCCeEEEEEEEE--cc
Q 011837 245 ----------DKSLCPWWNG-PCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KD 285 (476)
Q Consensus 245 ----------~~~~~~w~~g-~~l~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~--~~ 285 (476)
.....||+.+ ..|++.+ +.+|.|.. +++.|+...|..++ +.
T Consensus 309 el~~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~ 388 (843)
T PLN00116 309 EKELMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASD 388 (843)
T ss_pred HHhhhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCC
Confidence 0012456655 3344433 34566521 22457888888876 34
Q ss_pred CCe-EEEEEEEEeeEecCCEEEEecCC----ce-----EEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 286 MGT-VVMGKVESGSVREGDSLLVMPNK----AQ-----VKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 286 ~G~-v~~g~v~sG~l~~gd~v~~~p~~----~~-----~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
.|. ++++||+||+|+.||.|++...+ .. .+|..|... ..+++++.||+++++ .|++. -+..|+
T Consensus 389 ~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai--~gl~~-~~~~gd 465 (843)
T PLN00116 389 KGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAM--VGLDQ-FITKNA 465 (843)
T ss_pred CCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEE--Eeecc-cccCCc
Confidence 577 89999999999999999865432 11 255555543 478999999999995 44432 134488
Q ss_pred EEecCC
Q 011837 352 VLSSVA 357 (476)
Q Consensus 352 vl~~~~ 357 (476)
+|++..
T Consensus 466 TL~~~~ 471 (843)
T PLN00116 466 TLTNEK 471 (843)
T ss_pred eecCCc
Confidence 887654
No 62
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=7.2e-29 Score=260.35 Aligned_cols=258 Identities=22% Similarity=0.388 Sum_probs=179.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
+.+.|+++||+|||||||+++|+... +. .....|+|.+.+...+.++
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~--v~-----------------------------~~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSA--VA-----------------------------KREAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc--cc-----------------------------cccCCceecccCeeEeeeccc
Confidence 45789999999999999999995321 11 0112334444433333221
Q ss_pred ----------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCce
Q 011837 122 ----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK 185 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~ 185 (476)
...++|||||||++|...+.++++.+|+++||+|+++|.. .|+.+++..++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e~i~~l~~~~vp- 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYKTP- 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHHHHHHHHHcCCC-
Confidence 1248999999999999999999999999999999999863 6999999999999998
Q ss_pred EEEEEEccCCCCcCccHH------------------HHHHHHHHHHHHHHhccCCc---------CCCeeEEeeeccccc
Q 011837 186 LLLVVNKMDDHTVNWSKE------------------RYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMGL 238 (476)
Q Consensus 186 iIvviNK~Dl~~~~~~~~------------------~~~~~~~~l~~~l~~~~~~~---------~~~~~~ipvSa~~g~ 238 (476)
+|+++||+|+.. .|... .+++....+...+...|+.. ..+++++|+||++|+
T Consensus 124 iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 899999999952 23210 11111112222345555532 236899999999999
Q ss_pred ccccccccCCCCCCCcchHHHHhhc-cC-CCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCc--
Q 011837 239 NMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA-- 312 (476)
Q Consensus 239 ~i~~~~~~~~~~w~~g~~l~~~l~~-i~-~~~~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~-- 312 (476)
|+.++... |..+... ++ .-..+.+.|++++|.+++ ++.|++++|.|.+|+|++||.|.++|.+.
T Consensus 203 GideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i 272 (590)
T TIGR00491 203 GIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVI 272 (590)
T ss_pred ChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcc
Confidence 99986331 2222121 21 112356789999999998 68999999999999999999999999874
Q ss_pred eEEEEEEEECC------------eeeeecCCCCeEEEEEeccCccCceeeeEE
Q 011837 313 QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 313 ~~~V~si~~~~------------~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 353 (476)
.++|++|...+ ..+.++.|..-+-+...+++. ...|+.+
T Consensus 273 ~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 273 VTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred cEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 68999998653 345566655555554555543 3456554
No 63
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=9.2e-29 Score=271.44 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=131.7
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
+...++||+++||+|||||||+++|++.+|.++.. ..| .++.+|..++|++||+|++.+...+.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAG-----DARFTDTRADEQERGITIKSTGISLYY 79 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCC-----ceeecccchhhHhhcceeeccceEEEe
Confidence 35678899999999999999999999999987653 122 135689999999999999998777777
Q ss_pred C----------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 121 E----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 121 ~----------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
. ++.++|+|||||.+|..++.++++.+|++|+|||+..|+. .|+++++..+...++| +|+++
T Consensus 80 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~i 151 (836)
T PTZ00416 80 EHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFI 151 (836)
T ss_pred ecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEE
Confidence 5 6789999999999999999999999999999999999984 7999999999999998 78899
Q ss_pred EccCCCCcCcc------HHHHHHHHHHHHHHHHh
Q 011837 191 NKMDDHTVNWS------KERYDEIESKMTPFLKA 218 (476)
Q Consensus 191 NK~Dl~~~~~~------~~~~~~~~~~l~~~l~~ 218 (476)
||||+.-.++. ..++.++.++++..+..
T Consensus 152 NK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~ 185 (836)
T PTZ00416 152 NKVDRAILELQLDPEEIYQNFVKTIENVNVIIAT 185 (836)
T ss_pred EChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999532222 35778888888877763
No 64
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.3e-30 Score=237.25 Aligned_cols=354 Identities=21% Similarity=0.344 Sum_probs=263.8
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
+.+-...+..+||+.+||+-|||||++.++ +|.- +-..+.|.+|++||.+++
T Consensus 29 s~evisRQATiNIGTIGHVAHGKSTvVkAi---SGv~-------------------------TvrFK~ELERNITIKLGY 80 (466)
T KOG0466|consen 29 SPEVISRQATINIGTIGHVAHGKSTVVKAI---SGVH-------------------------TVRFKNELERNITIKLGY 80 (466)
T ss_pred CHHHhhheeeeeecceeccccCcceeeeee---ccce-------------------------EEEehhhhhcceeEEecc
Confidence 444455677899999999999999999876 2221 122355667888888766
Q ss_pred EEEEe-----------------------------C--------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCC
Q 011837 116 AHFET-----------------------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 116 ~~~~~-----------------------------~--------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~ 158 (476)
.+-.. . -+.+.|+|+|||.-.+.+|+.|+...|+|+|+|.+++
T Consensus 81 ANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NE 160 (466)
T KOG0466|consen 81 ANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE 160 (466)
T ss_pred ccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCC
Confidence 43100 0 1568999999999999999999999999999999998
Q ss_pred CccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc
Q 011837 159 GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 238 (476)
Q Consensus 159 g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~ 238 (476)
..- ++||.||+.....+.+++++++-||+|+.. ++...+-.+++..|++.... ++.|++|+||--+.
T Consensus 161 sCP------QPQTsEHLaaveiM~LkhiiilQNKiDli~----e~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlky 227 (466)
T KOG0466|consen 161 SCP------QPQTSEHLAAVEIMKLKHIIILQNKIDLIK----ESQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKY 227 (466)
T ss_pred CCC------CCchhhHHHHHHHhhhceEEEEechhhhhh----HHHHHHHHHHHHHHHhcccc---CCCceeeehhhhcc
Confidence 653 699999999999999999999999999943 34444555677777776543 37799999999999
Q ss_pred ccccccccCCCCCCCcchHHH-HhhccCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeEecCCEEEE
Q 011837 239 NMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLV 307 (476)
Q Consensus 239 ~i~~~~~~~~~~w~~g~~l~~-~l~~i~~~~~~~~~p~~~~v~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~ 307 (476)
|++. +.+ ++..+|.|.++...|.|+.|.+.|. -.|-|+.|.+..|.|++||.+.+
T Consensus 228 NId~--------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEi 293 (466)
T KOG0466|consen 228 NIDV--------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEI 293 (466)
T ss_pred ChHH--------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEe
Confidence 9887 445 5567999999999999999999882 26889999999999999999999
Q ss_pred ecCCc------eE-------EEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEE
Q 011837 308 MPNKA------QV-------KVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQ 371 (476)
Q Consensus 308 ~p~~~------~~-------~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~ 371 (476)
.|+-. .. +|.|+...+.+.+.|.||..+++..+ .+...|-..|+||...+..|....+++...+
T Consensus 294 RPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~ 373 (466)
T KOG0466|consen 294 RPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYF 373 (466)
T ss_pred cCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehh
Confidence 99631 12 34455556789999999999997544 2233445578888888888888788877766
Q ss_pred EecccC-----------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 372 ILELLD-----------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 372 ~~~~~~-----------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
.|..+- + ..+.+|...++.+|+...-++|..+. +| .+++.|..|+|
T Consensus 374 Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk--------------------~d--~~k~~Lt~P~C 431 (466)
T KOG0466|consen 374 LLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVK--------------------AD--MAKIQLTSPVC 431 (466)
T ss_pred hhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEe--------------------cc--eeeeEecCchh
Confidence 643221 0 23556777788888887777776542 11 45678889999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEEEE
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTE 468 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V~~ 468 (476)
.|-.+. -+++|-+=+ .=|.+|.|.|.+
T Consensus 432 teigEk-iAlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 432 TEIGEK-IALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred cccchh-hhhhhhhhh-heEEecceeEeC
Confidence 887643 234444322 237889998864
No 65
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.1e-29 Score=248.12 Aligned_cols=278 Identities=23% Similarity=0.282 Sum_probs=212.2
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
...-+..+||++..|.|||||||.++.||.+|.+..-. + ..|+ ...||+...||++|+|++.+..++
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~------e--v~~~-----~a~md~m~~er~rgITiqSAAt~~ 99 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG------E--VRGG-----GATMDSMELERQRGITIQSAATYF 99 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeecc------c--cccC-----ceeeehHHHHHhcCceeeeceeee
Confidence 33445789999999999999999999999998765421 1 1111 457999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
.|.++++++||||||.||.-++.++++..|+||+|+|+..|+ +.||...++.++..++| .|..|||||+.++
T Consensus 100 ~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 100 TWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGA 171 (721)
T ss_pred eeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCC
Confidence 999999999999999999999999999999999999999998 48999999999999999 5679999999755
Q ss_pred CccHHHHHHHHHHHH-----------------------------------------------------------HHH---
Q 011837 199 NWSKERYDEIESKMT-----------------------------------------------------------PFL--- 216 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~-----------------------------------------------------------~~l--- 216 (476)
+.. ..++.+...+. +.+
T Consensus 172 ~~~-~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 172 SPF-RTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred ChH-HHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 421 11111111100 000
Q ss_pred -----------------------HhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCC----
Q 011837 217 -----------------------KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 269 (476)
Q Consensus 217 -----------------------~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~---- 269 (476)
++.-++ ...+|++.-||+.+.|+..+ |...++.+|.|..
T Consensus 251 DE~l~e~fLee~~ps~~~l~~aIRr~Ti~-r~fvPVl~GSAlKNkGVQPl-------------LDAVvdYLPsP~Ev~n~ 316 (721)
T KOG0465|consen 251 DETLAEMFLEEEEPSAQQLKAAIRRATIK-RSFVPVLCGSALKNKGVQPL-------------LDAVVDYLPSPSEVENY 316 (721)
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHhh-cceeeEEechhhcccCcchH-------------HHHHHHhCCChhhhccc
Confidence 000000 12357888899999999875 4445666665521
Q ss_pred -----------------CCCCCeEEEEEEEEcc-CCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeee
Q 011837 270 -----------------DPNGPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 327 (476)
Q Consensus 270 -----------------~~~~p~~~~v~~~~~~-~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~ 327 (476)
..+.||....+....+ .|...+-||++|+|+.||.|+....+++++|..+.+. .++|+
T Consensus 317 a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~ 396 (721)
T KOG0465|consen 317 ALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVN 396 (721)
T ss_pred ccccCCCCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhh
Confidence 1112665555554433 3888999999999999999999999999998887554 57899
Q ss_pred ecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 328 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 328 ~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
++.|||+++ |.|+ +...||++.+..
T Consensus 397 ~v~AG~I~a--lfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 397 EVLAGDICA--LFGI---DCASGDTFTDKQ 421 (721)
T ss_pred hhhccceee--eecc---ccccCceeccCc
Confidence 999999999 5676 678999998873
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1.2e-28 Score=229.79 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=143.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|||||||+++|++.+|.++.+. .| .++.+|....|++||+|++.....+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999999776542 11 1467999999999999999987665554
Q ss_pred ------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.++|||||||.+|..++..+++.+|++++|+|+.+|.. .|+++++..+...++| +|+|+||||+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999974 6999999999999998 8899999998
Q ss_pred C------CcCccHHHHHHHHHHHHHHHHhccCCc-----CCC--e-e----EEeeecccccccc
Q 011837 196 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNMK 241 (476)
Q Consensus 196 ~------~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~--~-~----~ipvSa~~g~~i~ 241 (476)
. .+++.+.++.++.+++..+++.+.-.. ... + | ++..|++.|+...
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~ 201 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT 201 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec
Confidence 5 334567788999999999888763210 001 2 3 7788999999773
No 67
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-27 Score=233.82 Aligned_cols=306 Identities=23% Similarity=0.300 Sum_probs=216.3
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
....+.++++|+.++.|+|||||||...|..+.|.++... .| -+.++|+...|++||+||.+...
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aG-----e~Rf~DtRkDEQeR~iTIKStAI 75 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AG-----ETRFTDTRKDEQERGITIKSTAI 75 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cC-----CccccccccchhhcceEeeeeee
Confidence 3455678899999999999999999999999999887431 22 24579999999999999998776
Q ss_pred EEE----------------eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH
Q 011837 117 HFE----------------TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 180 (476)
Q Consensus 117 ~~~----------------~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~ 180 (476)
.+. .++..++|||.|||.||..+...+++..|+|++|||+-+|++ -||+..+..+..
T Consensus 76 Sl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ 148 (842)
T KOG0469|consen 76 SLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIA 148 (842)
T ss_pred eehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHH
Confidence 532 135779999999999999999999999999999999999998 799999999999
Q ss_pred cCCceEEEEEEccCCCCc--CccHH----HHHHHHHHHHHHHHhccCCcCCCeeE-------Eeeeccccccccccc---
Q 011837 181 LGVTKLLLVVNKMDDHTV--NWSKE----RYDEIESKMTPFLKASGYNVKKDVQF-------LPISGLMGLNMKTRV--- 244 (476)
Q Consensus 181 l~i~~iIvviNK~Dl~~~--~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~-------ipvSa~~g~~i~~~~--- 244 (476)
..|+ .++++||||++-- .++++ .|+++.+.++..+..+|..+..++.+ =..|+++|+++.-..
T Consensus 149 ERIk-Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~ 227 (842)
T KOG0469|consen 149 ERIK-PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAE 227 (842)
T ss_pred hhcc-ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHH
Confidence 9998 5689999997421 22332 23333333333333334322222332 345888887653110
Q ss_pred -----------------------ccCCCCCCC------------------------------------------------
Q 011837 245 -----------------------DKSLCPWWN------------------------------------------------ 253 (476)
Q Consensus 245 -----------------------~~~~~~w~~------------------------------------------------ 253 (476)
....-+|..
T Consensus 228 ~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~l 307 (842)
T KOG0469|consen 228 MYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTL 307 (842)
T ss_pred HHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhccee
Confidence 000112321
Q ss_pred -----------------------cchHHHHhh-ccCCC-------------------------CCCCCCCeEEEEEEEEc
Q 011837 254 -----------------------GPCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK 284 (476)
Q Consensus 254 -----------------------g~~l~~~l~-~i~~~-------------------------~~~~~~p~~~~v~~~~~ 284 (476)
+.+|++.+. ++|+| .++++.|+.++|....+
T Consensus 308 k~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvP 387 (842)
T KOG0469|consen 308 KGDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVP 387 (842)
T ss_pred ccccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccc
Confidence 233444332 24544 46788999999999884
Q ss_pred --cCCeE-EEEEEEEeeEecCCEEEEecCCc------eEEEEEEEE-------CCeeeeecCCCCeEEEEEeccCccCce
Q 011837 285 --DMGTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIYC-------DDNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 285 --~~G~v-~~g~v~sG~l~~gd~v~~~p~~~------~~~V~si~~-------~~~~v~~a~aG~~v~l~l~~~~~~~i~ 348 (476)
++|+. ++|||.||.+..|+++++..-+. ...+|+|++ .-++++.+.+|++++ |-|++..-++
T Consensus 388 tsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvK 465 (842)
T KOG0469|consen 388 TSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVK 465 (842)
T ss_pred cCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhc
Confidence 67876 88999999999999999974431 233445543 468999999999999 6788888888
Q ss_pred eeeEEecCCCCcccccEEE
Q 011837 349 SGFVLSSVAKPVAAVTEFI 367 (476)
Q Consensus 349 ~G~vl~~~~~~~~~~~~f~ 367 (476)
.|.+-......-..+..|.
T Consensus 466 tGTiTt~e~AHNmrvMKFS 484 (842)
T KOG0469|consen 466 TGTITTSEAAHNMRVMKFS 484 (842)
T ss_pred cCceeehhhhccceEEEee
Confidence 8887665543333334443
No 68
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=2.5e-26 Score=215.09 Aligned_cols=192 Identities=26% Similarity=0.402 Sum_probs=151.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcch------HHHHHHHHHHhhcCccchhhhhhcCCchhhh----ccccEEeeeeE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 116 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~----~~g~ti~~~~~ 116 (476)
+|+++||+++|||||+++|. .+..+. ..+.++.++. +.|++++...+.+++..+++ ..+.+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~--~~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLT--QGELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHH--hCCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 58999999999999999985 344443 2345555554 57999988888887776543 12233333334
Q ss_pred EEEeCCeEEEEEeCCCCcCcHHHHhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 117 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++..++.++|+|||||++|.+++++++. .+|++++|||+..|.. .++++|+..+..+++| +|+|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 56778899999999999999999999986 7999999999999874 7999999999999999 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCC--------------------cCCCeeEEeeecccccccccccccCCCCCCCc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 254 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~--------------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g 254 (476)
+ . +++++.+..+++..+++..|+. ....+|++++|+.+|+|+++
T Consensus 150 ~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 L--A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred c--c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 8 3 3567888888888888765543 12245999999999999998
Q ss_pred chHHHHhhccCCC
Q 011837 255 PCLFEALDRIEIT 267 (476)
Q Consensus 255 ~~l~~~l~~i~~~ 267 (476)
|.++|..+|++
T Consensus 214 --L~~~L~~lp~~ 224 (224)
T cd04165 214 --LHAFLNLLPLR 224 (224)
T ss_pred --HHHHHHhcCCC
Confidence 77888888763
No 69
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=1.9e-26 Score=221.70 Aligned_cols=174 Identities=26% Similarity=0.310 Sum_probs=142.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|||||||+++|++.+|.++..+ +. ...++.+|+.++|++||+|++.....++|.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g------------~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG------------EV-HGGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-cCCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 699999999999999999999999776421 11 11367899999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|+|||||.+|...+.++++.+|++|+|||+..|.. .++++++..+...++| +++++||+|+..++ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVE-------PQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 99999999999999999999999999999999873 7899999999999999 67899999995432 44
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeeccccc-ccccccccCCCCC
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVDKSLCPW 251 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~~~~~~~~w 251 (476)
.+.++++..+.... ...++|+|+..+. |+.++.....+.|
T Consensus 135 ~~~~~l~~~l~~~~-----~~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANP-----VPLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCc-----eEEEeccccCCCceEEEEccccEEEec
Confidence 55666666654432 3468899997664 6666655444455
No 70
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.94 E-value=8e-26 Score=209.54 Aligned_cols=157 Identities=28% Similarity=0.384 Sum_probs=125.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|||||||+++|. + ..+|..+.|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---~-------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---G-------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---C-------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 589999999999999999982 1 12567788888999998887766553
Q ss_pred -----------------------C------eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH
Q 011837 122 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 122 -----------------------~------~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~ 172 (476)
+ +.++|||||||.+|..+++.++..+|++++|+|+.++.. ..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~------~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP------QPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC------CcchH
Confidence 3 789999999999999999999999999999999998532 25889
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 173 e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+++..+...+++++|+|+||+|+.. +..+....+.++.+++.... ..++++++||++|.|++++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~~----~~~~~~~~~~i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLVK----EEQALENYEQIKKFVKGTIA---ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhccC----HHHHHHHHHHHHHHHhcccc---CCCcEEEEeCCCCCCHHHH
Confidence 9999888888877899999999932 23445555666666654322 2468999999999999984
No 71
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.5e-27 Score=225.91 Aligned_cols=271 Identities=21% Similarity=0.295 Sum_probs=200.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.+||+++.|+|+||||..+++||..|.+...+ ..-....++|+...||+||+|++...+.|+|.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g-------------~vddgdtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------------DVDDGDTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------------ccCCCchHHHHHHHHHhcCceeeeeeeeccccc
Confidence 3568999999999999999999999998765432 112345678999999999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+++++||||||.||.-++.++++..|+++.|+|+..|+ ++||...++.+...++| -++++||||...++
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~an--- 170 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAAN--- 170 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhh---
Confidence 99999999999999999999999999999999999998 48999999999999999 46799999986543
Q ss_pred HHHHHHHHHHHHHHHh------------ccCC-----------------c------------------------------
Q 011837 203 ERYDEIESKMTPFLKA------------SGYN-----------------V------------------------------ 223 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~------------~~~~-----------------~------------------------------ 223 (476)
|+...+.+++-+.. -||+ +
T Consensus 171 --fe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal 248 (753)
T KOG0464|consen 171 --FENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNAL 248 (753)
T ss_pred --hhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHH
Confidence 22222222222210 0010 0
Q ss_pred -----------------------------------------CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhh
Q 011837 224 -----------------------------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD 262 (476)
Q Consensus 224 -----------------------------------------~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~ 262 (476)
+..+++.+-||.++.|+.. |++.+.
T Consensus 249 ~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqp--------------lldavt 314 (753)
T KOG0464|consen 249 CEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQP--------------LLDAVT 314 (753)
T ss_pred HHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccc--------------hhhhhh
Confidence 0112556667777777665 444444
Q ss_pred c-cCCCCCCCCCCeEEEEEEE-------E--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeeee
Q 011837 263 R-IEITPRDPNGPFRMPIIDK-------F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 328 (476)
Q Consensus 263 ~-i~~~~~~~~~p~~~~v~~~-------~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~ 328 (476)
. +|.|+.....-+..+-+|. . |.+|...+.||++|+|+.+-.+....+++.-.+..+... +..+++
T Consensus 315 mylpspeernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~q 394 (753)
T KOG0464|consen 315 MYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQ 394 (753)
T ss_pred hccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhh
Confidence 3 5666544333333333332 1 568999999999999999999998888877666665543 667899
Q ss_pred cCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 329 AGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
..||++.- ..|++. ...||.++...
T Consensus 395 lsagnial--t~glk~--tatgdtivask 419 (753)
T KOG0464|consen 395 LSAGNIAL--TAGLKH--TATGDTIVASK 419 (753)
T ss_pred cccccEEE--Eeccee--eccCCeEEecc
Confidence 99998765 345533 56888887655
No 72
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.93 E-value=2e-24 Score=236.76 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=170.4
Q ss_pred hhccccEEeeeeEEEEeCC------------------eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCcccccc
Q 011837 104 ERIKGKTVEVGRAHFETET------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGF 165 (476)
Q Consensus 104 e~~~g~ti~~~~~~~~~~~------------------~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~ 165 (476)
....|||++.+...+.++. ..++|||||||++|...+.++++.+|+++||+|+++|..
T Consensus 489 ~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~---- 564 (1049)
T PRK14845 489 KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK---- 564 (1049)
T ss_pred ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC----
Confidence 3468999999998887652 128999999999999988889999999999999998863
Q ss_pred CCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc---------------HHHHHHHHHHH---HHHHHhccCCc----
Q 011837 166 EKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS---------------KERYDEIESKM---TPFLKASGYNV---- 223 (476)
Q Consensus 166 ~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~---------------~~~~~~~~~~l---~~~l~~~~~~~---- 223 (476)
.|+.+++..+...++| +|+|+||+|+.. .|. +..++++.+.+ ...|...|+.+
T Consensus 565 ---~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~ 639 (1049)
T PRK14845 565 ---PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFD 639 (1049)
T ss_pred ---HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhh
Confidence 7999999999999998 899999999952 343 11222222222 22245666542
Q ss_pred -----CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccC------CCCCCCCCCeEEEEEEEE--ccCCeEE
Q 011837 224 -----KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE------ITPRDPNGPFRMPIIDKF--KDMGTVV 290 (476)
Q Consensus 224 -----~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~------~~~~~~~~p~~~~v~~~~--~~~G~v~ 290 (476)
...++++|+||++|+|+.++. +.|..++ ....+.+.|++++|.+++ ++.|+++
T Consensus 640 ~~~d~~~~v~iVpVSA~tGeGId~Ll--------------~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vv 705 (1049)
T PRK14845 640 RVQDFTRTVAIVPVSAKTGEGIPELL--------------MMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTI 705 (1049)
T ss_pred hhhhcCCCceEEEEEcCCCCCHHHHH--------------HHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEE
Confidence 246899999999999999853 3322211 123345789999999998 6899999
Q ss_pred EEEEEEeeEecCCEEEEecCCc--eEEEEEEEEC------------CeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 291 MGKVESGSVREGDSLLVMPNKA--QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 291 ~g~v~sG~l~~gd~v~~~p~~~--~~~V~si~~~------------~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
+|.|.+|+|++||.|.++|.+. ..+|++|... ..+++++.|+.-|.+...|++. +..|+-+.-
T Consensus 706 t~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~v 782 (1049)
T PRK14845 706 DAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIRI 782 (1049)
T ss_pred EEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEEE
Confidence 9999999999999999999765 6899999742 2467788888877775555543 456665543
No 73
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=3e-25 Score=204.07 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=127.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|+|||||+++|+...+ .+.+|....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999964211 134677778899999999988777765
Q ss_pred ----------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 122 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 122 ----------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
++.++|||||||.+|.+.+..++..+|++++|+|+..+.. .++.+++..+...++| +++++|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999998763 4677777777778887 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+|+...+..+..++++.+.+...+...++. .++++|+||++|.|+.++
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9999433222233444555554445444432 568999999999999983
No 74
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.8e-24 Score=218.17 Aligned_cols=178 Identities=21% Similarity=0.349 Sum_probs=143.0
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.....++|++++.|+|||||||.+.|+...|.|+.+-..+ -.+||+.++|..||||+..+.....
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~ 68 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLL 68 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeeccccccc
Confidence 3456789999999999999999999999999888774322 2469999999999999999999888
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
..++.++|||+|||.||..+.-++.+.+|.|+++||+.+|++ .||...++.+-..|.+ +|+|+||||+.-.+
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidrl~~e 140 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDRLITE 140 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhhHHHH
Confidence 899999999999999999999999999999999999999997 7999999999999997 88999999942111
Q ss_pred ---ccHHHHH---HHHHHHHHHHH-------------------hccCCcCCCeeEEeeecccccccc
Q 011837 200 ---WSKERYD---EIESKMTPFLK-------------------ASGYNVKKDVQFLPISGLMGLNMK 241 (476)
Q Consensus 200 ---~~~~~~~---~~~~~l~~~l~-------------------~~~~~~~~~~~~ipvSa~~g~~i~ 241 (476)
..++.+. .+.++++..+. ..-|++. +-.++..||..|+++.
T Consensus 141 l~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~-kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 141 LKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPE-DGNVIFASALDGWGFG 206 (887)
T ss_pred HhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCC-CCcEEEEEeccccccc
Confidence 1233333 34444444443 2223332 3368889999998773
No 75
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.92 E-value=2.4e-24 Score=203.68 Aligned_cols=144 Identities=33% Similarity=0.456 Sum_probs=121.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|+|||||+++|++..|.+...+ +-. ...+.+|+.++|+++|+|+......+++.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g------------~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLG------------SVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccc------------ccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 689999999999999999999998876432 111 1235789999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|||||||.+|...+..+++.+|++++|+|+..|.. .++++++..+...++| +++++||+|+..+++ ++.++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~-------~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ-------AQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 99999999999999999999999999999999863 6889999999999999 678999999965543 34454
Q ss_pred HHHHHH
Q 011837 207 EIESKM 212 (476)
Q Consensus 207 ~~~~~l 212 (476)
++++.+
T Consensus 139 ~i~~~~ 144 (237)
T cd04168 139 EIKEKL 144 (237)
T ss_pred HHHHHH
Confidence 444433
No 76
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=4.6e-24 Score=196.46 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=136.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
+++|+++|++++|||||+++|++..|.+..... ...+.+|..+.|+.+|+|+......+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 579999999999999999999876666543210 01356788888999999999988888899999
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
++|||||||.+|...+..+++.+|++++|+|+.++.+ .++++++..+...++| +++|+||+|+... +
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-----~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPDA-----R 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999998763 4777777777778998 7889999999432 2
Q ss_pred HHHHHHHHHHHHHhccCCc-CCCeeEEeeecccccccccc
Q 011837 205 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~ 243 (476)
++...+++..++..++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 3445556666665544331 12568999999999999875
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=4.9e-24 Score=199.19 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=132.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
+||+++||+|+|||||+++|++..+.+..+ |+.....++.+|...+|+++|+|+......+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 589999999999999999999988876532 2333445667899999999999999887777553
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC---
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~--- 197 (476)
.+.++|||||||.+|...+..++..+|++++|+|+.++.. .++++++..+...++| +++++||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999998763 4667777777777887 889999999841
Q ss_pred ---cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEee
Q 011837 198 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 232 (476)
Q Consensus 198 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipv 232 (476)
.....+++.++.+++..+++.+++++ .+.++|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 12234678888899999998887752 3455554
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=1.8e-23 Score=189.74 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 120 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----- 120 (476)
+||+++|++|+|||||+++|++..|.++++.. ..+.+++...++.+|+|.......+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 58999999999999999999988877654321 134577778888999998876655533
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+..++|||||||.+|...+..++..+|++|+|+|++.+.. .++.+++..+...++| +++|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 46778999999999999999999999999999999988752 4667777777777888 88999999984321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+..+++.+. +++. ..+++++||++|.|+.++
T Consensus 136 ----~~~~~~~~~~~---~~~~---~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 136 ----PERVKQQIEDV---LGLD---PSEAILVSAKTGLGVEDL 168 (179)
T ss_pred ----HHHHHHHHHHH---hCCC---cccEEEeeccCCCCHHHH
Confidence 12223333332 2332 235899999999999985
No 79
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.90 E-value=2.6e-23 Score=199.81 Aligned_cols=150 Identities=26% Similarity=0.373 Sum_probs=122.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
++||+++||+|||||||+++|++..|.++..+... ++. ......+|+.++|++||+++......+++.+.+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~--------~~~-~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVK--------ARK-SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceec--------ccc-cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 58999999999999999999999999887542110 000 112346899999999999999999999999999
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
++|||||||.+|...+..+++.+|++|+|+|+..+.. .++.+++..+...++| +++++||||+..++
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-------~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~----- 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-------PQTRKLFEVCRLRGIP-IITFINKLDREGRD----- 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-------HHHHHHHHHHHhcCCC-EEEEEECCccCCCC-----
Confidence 9999999999999999999999999999999998863 5788888888888998 78899999985443
Q ss_pred HHHHHHHHHHHH
Q 011837 205 YDEIESKMTPFL 216 (476)
Q Consensus 205 ~~~~~~~l~~~l 216 (476)
+.++.++++..+
T Consensus 140 ~~~~~~~l~~~l 151 (267)
T cd04169 140 PLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHH
Confidence 334445555544
No 80
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.90 E-value=3.7e-23 Score=171.44 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.8
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 441 (476)
.+++|+|++.||+. .+++|.+||++++|+|+.+++|+|.+|.+++|+++|+..+++|++|++|+.|.|+|++++|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 46889999999763 12678999999999999999999999999999998887778899999999999999999999999
Q ss_pred cccCccccceEEEEeCCcEEEEEEEEEc
Q 011837 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tva~G~V~~v 469 (476)
+|++++.||||+||++|+|+|+|+|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999864
No 81
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=2e-22 Score=179.64 Aligned_cols=155 Identities=28% Similarity=0.487 Sum_probs=120.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-CeEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRF 125 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~ 125 (476)
+|+++|++|+|||||+++|.... .+....+..+++|++..+..+.+. +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 78999999999999999984210 122234556788888887777776 7899
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~ 205 (476)
.+|||||+++|...+..+++.+|++++|+|++++.. .++.+++..+...+.+++++++||+|+.. +..+
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~~ 122 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDWL 122 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHHH
Confidence 999999999999999999999999999999988653 57888887777778745999999999942 2234
Q ss_pred HHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 206 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 206 ~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
....+++.+.++..++. ..+++++||++|.|+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 123 ELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHH
Confidence 44555666666654322 468999999999999984
No 82
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.89 E-value=2.7e-22 Score=166.14 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=98.8
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 441 (476)
.+++|+|+++|++. +.+|.+||++.+|+++..++|+|.+|.+++|.++++..+++|++|++||.|.|+|++++|+|+|
T Consensus 2 ~~~~f~A~v~~l~~--~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e 79 (107)
T cd04093 2 SSTRFEARILTFNV--DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLE 79 (107)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEE
Confidence 46899999999542 4789999999999999999999999999999999887777899999999999999999999999
Q ss_pred cccCccccceEEEEeCCcEEEEEEEEEc
Q 011837 442 KFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tva~G~V~~v 469 (476)
+|.+++.+|||+||++|.|+|+|+|++|
T Consensus 80 ~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 80 LFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 9999999999999999999999999875
No 83
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1e-21 Score=197.98 Aligned_cols=171 Identities=22% Similarity=0.267 Sum_probs=131.4
Q ss_pred cCcccccccCCCCCCCccccccccc------cccccccccccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHH
Q 011837 3 LDSEEVQAVSQPVHPEPKVKHKEVS------AVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRT 76 (476)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~ 76 (476)
-+.+|.|-..+|++.|++.++.+.. ..+..+--..........+||+++||-.||||+|+..|...+-- +
T Consensus 80 vqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp-~--- 155 (971)
T KOG0468|consen 80 VQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHP-D--- 155 (971)
T ss_pred eeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccc-c---
Confidence 3567788888888888876644332 11222222345566678899999999999999999998754431 0
Q ss_pred HHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-----CCeEEEEEeCCCCcCcHHHHhhhccccCEEE
Q 011837 77 IQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-----ETTRFTILDAPGHKSYVPNMISGASQADIGV 151 (476)
Q Consensus 77 ~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-----~~~~~~liDtPGh~~f~~~~~~~~~~aD~av 151 (476)
+ .+..-.-...+|....|++||.+|......+-. ..+.++++|||||.+|..++..+++.+|+++
T Consensus 156 ~----------~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvV 225 (971)
T KOG0468|consen 156 F----------SKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVV 225 (971)
T ss_pred c----------cccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEE
Confidence 0 000001124578899999999999988766433 3477999999999999999999999999999
Q ss_pred EEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 152 LVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 152 lVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
||||+.+|++ -+|.+.+..+-....| ++||+||+|+
T Consensus 226 lvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 226 LVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred EEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhHH
Confidence 9999999996 6899999999999998 9999999996
No 84
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.4e-22 Score=206.09 Aligned_cols=246 Identities=22% Similarity=0.362 Sum_probs=173.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.-+.+.++|+||||+|||-|+..+... + -.+....|+|...+..+|...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~t-N------------------------------VqegeaggitqqIgAt~fp~~ 520 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGT-N------------------------------VQEGEAGGITQQIGATYFPAE 520 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcc-c------------------------------cccccccceeeeccccccchH
Confidence 345688999999999999999987321 1 122234577777776666543
Q ss_pred ------------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC
Q 011837 122 ------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 183 (476)
Q Consensus 122 ------------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i 183 (476)
--.+.+||||||+.|.....+|.+.||.||||||..+|. .+||.|.+.+++..+.
T Consensus 521 ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl-------epqtiESi~lLR~rkt 593 (1064)
T KOG1144|consen 521 NIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL-------EPQTIESINLLRMRKT 593 (1064)
T ss_pred HHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC-------CcchhHHHHHHHhcCC
Confidence 123789999999999999999999999999999999997 4899999999999999
Q ss_pred ceEEEEEEccCCCCcCccH------------------HHHHHHHHHHHHHHHhccCCc---------CCCeeEEeeeccc
Q 011837 184 TKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 236 (476)
Q Consensus 184 ~~iIvviNK~Dl~~~~~~~------------------~~~~~~~~~l~~~l~~~~~~~---------~~~~~~ipvSa~~ 236 (476)
| |||++||+|+. -+|.. ..|..-.+.+..-|...|++. ...+.++|+||.+
T Consensus 594 p-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 594 P-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred C-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 9 99999999974 22311 122222223333344445431 2357899999999
Q ss_pred ccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEE--EccCCeEEEEEEEEeeEecCCEEEEecCC---
Q 011837 237 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNK--- 311 (476)
Q Consensus 237 g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~--~~~~G~v~~g~v~sG~l~~gd~v~~~p~~--- 311 (476)
|+|+-.+.. | |.++-...-...-.....++..|.++ ..|.|+.+-..+..|.|+.||.|.++..+
T Consensus 672 GeGipdLl~-----l-----lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 672 GEGIPDLLL-----L-----LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred CCCcHHHHH-----H-----HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 999988521 1 22221111111111234566777765 47999999999999999999999998654
Q ss_pred -------------ceEEEEEEEECCeee-------------eecCCCCeEEE
Q 011837 312 -------------AQVKVLAIYCDDNRV-------------RHAGPGENLRI 337 (476)
Q Consensus 312 -------------~~~~V~si~~~~~~v-------------~~a~aG~~v~l 337 (476)
...+|++=+.||..| +.|.||..+-+
T Consensus 742 vTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 742 VTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred hHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 246788877776444 45666766654
No 85
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.87 E-value=8.3e-22 Score=162.35 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.0
Q ss_pred cccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEe
Q 011837 362 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 440 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~ 440 (476)
.+++|+|+++|| ++ .+|.+||++.+|+++.+++|+|.+|.+++|.++++..+++|++|++|+.+.|+|++++|+|+
T Consensus 2 ~~~~f~A~v~~l---~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIVL---NHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEEE---CCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 368899999995 45 78999999999999999999999999999999988777789999999999999999999999
Q ss_pred ecccCccccceEEEEeCCcEEEEEEE
Q 011837 441 EKFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 441 e~~~~~~~lgrfilr~~~~tva~G~V 466 (476)
|+|++++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 86
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=7.7e-21 Score=173.54 Aligned_cols=170 Identities=31% Similarity=0.518 Sum_probs=132.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|+.......... ......++....+..+++|++.....++..+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDG---------------TVEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCC---------------ceecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 589999999999999999976654332211 01113456667788889999988888888899999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|+||||+.+|...+..+++.+|++++|+|+..+.. .+.++.+..+...+.| +++++||+|+.. ++.+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999999999999999999999999988753 4677777777777887 899999999943 34455
Q ss_pred HHHHHHHHHHHhccCC--------cCCCeeEEeeecccccccccc
Q 011837 207 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~--------~~~~~~~ipvSa~~g~~i~~~ 243 (476)
...+.+.+.++..+.. .....+++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 6666777777665531 013578999999999999985
No 87
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.85 E-value=7.2e-21 Score=184.08 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=127.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++||+|+|||||+++|++..|.+...+ .- ....+++|..++++.+++++......+++.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g------------~v-~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLG------------SV-EDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCC------------ee-cCCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 689999999999999999998887664321 11 12356789999999999999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
|||||||.+|...+..+++.+|++++|+|+..+.. .++..++..+...++| +++++||+|+... .++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~-----~~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERA-----DFD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCC-----CHH
Confidence 99999999999999999999999999999999863 5788888888999998 6789999999543 244
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+..+.+++.+.. .+-.+.+...+|.|+..+
T Consensus 135 ~~~~~l~~~~~~-------~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 135 KTLAALQEAFGR-------PVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred HHHHHHHHHhCC-------CeEEEEecccCCCceeEE
Confidence 455555554421 111223345666665543
No 88
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.84 E-value=1.9e-20 Score=153.76 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=92.0
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 441 (476)
.+..|+|+++||+ +.+|.+||.+.+|+|+.+++|+|.+|.+++|.++++. .+|++|+.|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEec
Confidence 4678999999954 5589999999999999999999999999999998873 4899999999999999999999999
Q ss_pred cccCccccceEEEEe--CCcEEEEEEE
Q 011837 442 KFADFAQLGRFTLRT--EGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfilr~--~~~tva~G~V 466 (476)
+|.+++.+|||+|+| +|.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 999999999999965 4999999986
No 89
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.83 E-value=6.4e-20 Score=149.07 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.6
Q ss_pred CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011837 359 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 359 ~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
|+.++++|+|++.+|+. +++|.+||++.+|+++.+++|++.+|.+++| +|+.. |++|++||.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 56788999999999653 4889999999999999999999999999998 55433 99999999999999999999
Q ss_pred EeecccCccccceEEEEeCCcEEEEEEEEEc
Q 011837 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 439 ~~e~~~~~~~lgrfilr~~~~tva~G~V~~v 469 (476)
|+|+|+ ||+|||+|+|+|+|+|++|
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999996 9999999999999999987
No 90
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1.6e-19 Score=161.70 Aligned_cols=152 Identities=30% Similarity=0.433 Sum_probs=109.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC---C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~ 122 (476)
+.|+++|++++|||||+++|+.. .. ......++|.+.....+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~--~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT--NV-----------------------------AAGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc--cc-----------------------------ccccCCCeEEeeccEEEecccCCc
Confidence 35899999999999999999421 10 11123456666665566654 7
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
..++|+|||||..|...+..++..+|++++|+|++++.. .++.+++..+...++| +++|+||+|+.. ...
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~--~~~ 119 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKPN--ANP 119 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceeccc--ccH
Confidence 889999999999998888888899999999999998753 5778888888888998 889999999942 222
Q ss_pred HHHHHHHHHHHHHHHhc--cCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKAS--GYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~--~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.+. ..+..+.... .+ ...++++++|+++|.|+.++
T Consensus 120 ~~~~---~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 120 ERVK---NELSELGLQGEDEW--GGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred HHHH---HHHHHhhccccccc--cCcCcEEEeecccCCCHHHH
Confidence 2222 2222221110 11 12468999999999999984
No 91
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.4e-19 Score=179.10 Aligned_cols=158 Identities=25% Similarity=0.348 Sum_probs=132.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.||+|||||+|+|+...-.+.+ ...|+|.|.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~------------------------------~~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVS------------------------------DIAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEec------------------------------CCCCccccceeeeEEECC
Confidence 35799999999999999999999754332221 257899999999999999
Q ss_pred eEEEEEeCCCC----------cCc-HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 123 TRFTILDAPGH----------KSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh----------~~f-~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
++|.|+||.|- +.| ...+..++..||.++||+||.+|.. .|..+.+.++...|.+ +|+|+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvN 297 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVN 297 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 99999999993 334 3345567889999999999999986 5999999999999998 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+ .+-++..+++.++++...+..++|. |++++||++|.|+.++.+
T Consensus 298 KWDl--~~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 298 KWDL--VEEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred cccc--CCchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9999 4435577888899999988888775 899999999999988643
No 92
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=1.6e-19 Score=157.71 Aligned_cols=144 Identities=21% Similarity=0.284 Sum_probs=98.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+|+|....- ......|+|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-------------------------------~v~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-------------------------------KVGNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-------------------------------eecCCCCCCeeeeeEEEEecCceE
Confidence 5799999999999999999943211 112357899999999999999999
Q ss_pred EEEeCCCCcCcH----HHH--hhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 126 TILDAPGHKSYV----PNM--ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 126 ~liDtPGh~~f~----~~~--~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
.|+|+||-.++. .+. ...+ ..+|++++|+||+.- .+..+.+..+..+|+| +|+|+||||+..
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 999999943331 111 1222 589999999999873 2455566777889999 899999999832
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .+.--.+.+.+.+ ++|++|+||++|.|++++
T Consensus 120 ~~----g~~id~~~Ls~~L---------g~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 120 RK----GIEIDAEKLSERL---------GVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp HT----TEEE-HHHHHHHH---------TS-EEEEBTTTTBTHHHH
T ss_pred Hc----CCEECHHHHHHHh---------CCCEEEEEeCCCcCHHHH
Confidence 21 1111123333332 358999999999999984
No 93
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4.1e-19 Score=175.73 Aligned_cols=144 Identities=21% Similarity=0.243 Sum_probs=115.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
+.|+++|.+|+|||||+|+|+...-+|. -| ..|+|.|..+...+|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV------------------------~D------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV------------------------SD------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe------------------------ec------CCCCccCCccceeEEcCceE
Confidence 6899999999999999999965433332 22 47999999999999999999
Q ss_pred EEEeCCCCcC-----cH----HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 126 TILDAPGHKS-----YV----PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~-----f~----~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
.+|||+|..+ +. .++..++..||++|||||+..|++ ++.++.+..++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999653 32 334567789999999999999986 6788888889977788 99999999973
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. +....-+.++|+. .++|+||.+|.|+.++
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDL 156 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHH
Confidence 11 1222235567775 6899999999999996
No 94
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=8.4e-19 Score=181.57 Aligned_cols=156 Identities=24% Similarity=0.321 Sum_probs=120.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|++....+ .....|.|.+.....+.+++
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECC
Confidence 457999999999999999999996432111 12246788888877888889
Q ss_pred eEEEEEeCCCCcCc-----------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 123 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~f-----------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
..+.|+||||+.+. ...++.++..+|++|+|+|+..+.. .|..+.+..+...+.| +|+|+|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997542 1234567889999999999999864 5777788888888888 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+. +++..+++.+.+...+.... .++++++||++|.|+.++.+
T Consensus 293 K~Dl~----~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 293 KWDLV----DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred CccCC----CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 99993 23456666666666655433 46899999999999998754
No 95
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=7.3e-19 Score=165.06 Aligned_cols=153 Identities=24% Similarity=0.215 Sum_probs=106.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...--|+++|.+|+|||||+|+|+...-++.++ ..+.|......-+..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~------------------------------k~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC------------------------------CcchhhhheeEEEEcCC
Confidence 345679999999999999999997654444332 22344444445566678
Q ss_pred eEEEEEeCCC-Cc-------CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPG-HK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPG-h~-------~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.|+|||| |+ ...+....++..+|++++|||++++.- ...+..+..++..+.| +|+++||+|
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~-------~~d~~il~~lk~~~~p-vil~iNKID 125 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWG-------PGDEFILEQLKKTKTP-VILVVNKID 125 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCC-------ccHHHHHHHHhhcCCC-eEEEEEccc
Confidence 9999999999 32 224445566789999999999999752 4556666777776778 789999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... +..+....+ .+-....| ..++|+||++|.|++.+.
T Consensus 126 ~~~~---~~~l~~~~~---~~~~~~~f-----~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 126 KVKP---KTVLLKLIA---FLKKLLPF-----KEIVPISALKGDNVDTLL 164 (298)
T ss_pred cCCc---HHHHHHHHH---HHHhhCCc-----ceEEEeeccccCCHHHHH
Confidence 8433 121222222 22223333 379999999999998853
No 96
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=6.1e-19 Score=157.93 Aligned_cols=156 Identities=23% Similarity=0.253 Sum_probs=102.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
||+++|+.|+|||||+++|....+.. .+ ... .....|+......+.+++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~-----------~~~--~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KG-----------LPP--SKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cC-----------Ccc--cccCCccccceEEEEECCEEEE
Confidence 68999999999999999985432210 00 000 1122344444456667789999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+||||||.+|...+...++.+|++++|+|+..... + ......+..+. ..++| +++++||+|+....
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~--- 123 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDAL--- 123 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccCC---
Confidence 99999999999888888999999999999976421 1 12222222222 24677 88999999985431
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+++.+.+.......+. ..++++++||++|.|+.++
T Consensus 124 -~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 124 -SVEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred -CHHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 122333333333222222 2568999999999999884
No 97
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=1.1e-18 Score=180.44 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=120.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+..... ......|+|.+.....+..++
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~------------------------------~~~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERV------------------------------IVSDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCee------------------------------ecCCCCCceECcEeEEEEECC
Confidence 45689999999999999999999642211 112246788887777788888
Q ss_pred eEEEEEeCCCCcCcHH-----------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 123 TRFTILDAPGHKSYVP-----------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~-----------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
..+.||||||+.++.+ .+..++..+|++|+|+|+.++.. .+..+.+..+...+.| +|+|+|
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999999765432 23456789999999999998864 4777777777788888 899999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+. + .++.++++.+.+...+...+ .++++++||++|.|+.++.+
T Consensus 292 K~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 292 KWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred CcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 99994 2 35566777777776665443 45899999999999998654
No 98
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.79 E-value=1.4e-18 Score=142.75 Aligned_cols=101 Identities=32% Similarity=0.537 Sum_probs=92.0
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEee
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 441 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e 441 (476)
++++|+|++.+++. ..+|.+||++.+|+++.+++|+|..|.+++|.++ ...+++++|++|+.+.|+|++++|+++|
T Consensus 2 ~~~~f~a~i~~l~~--~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e 77 (102)
T cd01513 2 AVDKFVAEIYVLDH--PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALE 77 (102)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEE
Confidence 46899999988542 3789999999999999999999999999999874 3456789999999999999999999999
Q ss_pred cccCccccceEEEEeCCcEEEEEEE
Q 011837 442 KFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 442 ~~~~~~~lgrfilr~~~~tva~G~V 466 (476)
+|.+++.+|||+||+.++|+|+|+|
T Consensus 78 ~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 78 TFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9999999999999999999999986
No 99
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=7.5e-18 Score=151.18 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=106.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+++|+...... ....++.+.+.....+..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------------------------VSDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------------------------ccCCCCCccCceeeEEEECCee
Confidence 5789999999999999999995321110 0112445555555566677888
Q ss_pred EEEEeCCCCcCcH-----------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 125 FTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 125 ~~liDtPGh~~f~-----------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
+.+|||||+.+.. ..+...+..+|++++|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 9999999975431 233456679999999999988753 2444455566667777 88999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+. +......+.+.+.+...+... ...+++++||++|.|+.++
T Consensus 124 Dl~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~ 166 (174)
T cd01895 124 DLV--EKDSKTMKEFKKEIRRKLPFL-----DYAPIVFISALTGQGVDKL 166 (174)
T ss_pred ccC--CccHHHHHHHHHHHHhhcccc-----cCCceEEEeccCCCCHHHH
Confidence 994 322344555556665544332 2358999999999999884
No 100
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=1e-17 Score=162.06 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=96.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
.|+++|++|+|||||+++|+...-.+ +. ...+.|.+.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~------------------------vs------~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI------------------------TS------PKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee------------------------cC------CCCCcccCcEEEEEEcCCcEEE
Confidence 58999999999999999996321110 00 1223333332333344567899
Q ss_pred EEeCCCCcCc--------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 127 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 127 liDtPGh~~f--------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
|+||||+.+. .+.+..++..+|++++|+|++.+.. .....+..+...+.| +++|+||+|+.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl~-- 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDNK-- 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeCC--
Confidence 9999996532 2234556789999999999987642 224455666677888 88999999993
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+ .+. ..+.+..+....++ .+++|+||++|.|++++.
T Consensus 121 ~--~~~---~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 121 F--KDK---LLPLIDKYAILEDF-----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred C--HHH---HHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHH
Confidence 2 222 22233333333333 279999999999999853
No 101
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.3e-17 Score=149.26 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=98.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|+.|+|||||+++|+. +... .+.......+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS--GTFS-----------------------------ERQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh--CCCc-----------------------------ccCCCccceEEEEEEEEECCEE
Confidence 58999999999999999999842 2111 11111222333444455555
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
..+.|+||||+++|.......++.+|++++|+|++.... |+...++.+.+......++| +|+|+||+|+.... +
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~--~ 125 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQR--E 125 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HHhHHHHHHHHHHhCCCCCc-EEEEEECccccccc--c
Confidence 578999999999998888888899999999999987532 11001122222222223576 88999999994321 1
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ..++...+.+..+. ..++++||++|.|+.++
T Consensus 126 ~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 126 V----LFEEACTLAEKNGM-----LAVLETSAKESQNVEEA 157 (165)
T ss_pred c----CHHHHHHHHHHcCC-----cEEEEEECCCCCCHHHH
Confidence 1 11223333333332 36899999999999985
No 102
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.75 E-value=1.1e-17 Score=133.89 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=82.7
Q ss_pred CCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCcee
Q 011837 272 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 272 ~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 349 (476)
++||||+|+++| ++.|++++|+|++|.|+.||+++++|++..++|++|+.++.++++|.|||+|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 579999999999 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCC
Q 011837 350 GFVLSSVAK 358 (476)
Q Consensus 350 G~vl~~~~~ 358 (476)
|++|+++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999999864
No 103
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=3e-17 Score=144.95 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=100.6
Q ss_pred EEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEEE
Q 011837 49 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 128 (476)
Q Consensus 49 ~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~li 128 (476)
+++|++|+|||||+++|+..... ..+...++|.+.........+..+.++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------------IVEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------------eecCCCCceeCceeEEEEECCeEEEEE
Confidence 58999999999999999522100 011234566666666777788999999
Q ss_pred eCCCCcCcHH--------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 129 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 129 DtPGh~~f~~--------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
||||+.++.. .....+..+|++++|+|+..+.. ....+++..++..+.| +++|+||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988644 44456788999999999987652 3455666777778887 8899999999432
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. . ...+...++. +++++|+++|.|++++
T Consensus 121 ~~-~--------~~~~~~~~~~-----~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 121 ED-E--------AAEFYSLGFG-----EPIPISAEHGRGIGDL 149 (157)
T ss_pred HH-H--------HHHHHhcCCC-----CeEEEecccCCCHHHH
Confidence 11 1 1123333332 6899999999999885
No 104
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=3.8e-17 Score=148.37 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=104.2
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|++|+|||||+++|+.... +. ......|.|.+..... .
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~--~ 62 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKK-LA----------------------------RTSKTPGRTQLINFFE--V 62 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------------------------cccCCCCcceEEEEEE--e
Confidence 345668999999999999999999853210 00 0011234455444332 2
Q ss_pred CCeEEEEEeCCCCc----------CcHHHH---hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011837 121 ETTRFTILDAPGHK----------SYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~----------~f~~~~---~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI 187 (476)
+ ..+.||||||+. +|...+ +.....+|++++|+|++.+.. .+..+.+..+...++| ++
T Consensus 63 ~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 63 N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EE
Confidence 3 379999999953 233222 233345789999999988653 4566667777888888 88
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 241 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~ 241 (476)
+++||+|+.. +...+...+++++.++..+. +.+++++||++|+|++
T Consensus 134 iv~nK~D~~~----~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADKLK----KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECcccCC----HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 9999999932 34456667777777776542 3579999999999974
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.6e-17 Score=170.25 Aligned_cols=143 Identities=21% Similarity=0.278 Sum_probs=108.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|+.....+ .+...|+|.+.......+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999995322111 112357888887788888999999
Q ss_pred EEeCCCC--------cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 127 ILDAPGH--------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 127 liDtPGh--------~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
||||||+ ..+...+..++..+|++++|+|+..+.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 3455566777889999999999998763 4666777788888888 8899999998433
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+. ...+ +..+|+. +++++||.+|.|+.++
T Consensus 123 ~~-------~~~~----~~~lg~~-----~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 123 DA-------VAAE----FYSLGFG-----EPIPISAEHGRGIGDL 151 (429)
T ss_pred cc-------cHHH----HHhcCCC-----CeEEEeCCcCCChHHH
Confidence 21 0111 3344543 6899999999999885
No 106
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=2.7e-17 Score=163.75 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=100.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|++|+|||||+++|+...-.+ .....+.|.+.....+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------------------------vs~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------------------------VTPKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee------------------------------ccCCCCCccCcEEEEEEeCC
Confidence 456799999999999999999995321100 00123445554445566788
Q ss_pred eEEEEEeCCCCcCc--------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f--------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.||||||..+. .+....++..+|++++|+|+..+.. ......+..++..+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~-------~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFD-------DITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 89999999997432 2223345679999999999887531 2334456666777887 568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... ...+ +...+...+ ...+++|+||++|.|++++.
T Consensus 172 l~~~-----~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 172 IESK-----YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred Cccc-----cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHH
Confidence 9321 1222 333333322 13479999999999998853
No 107
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=3.4e-17 Score=144.97 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=96.0
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEEEe
Q 011837 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 129 (476)
Q Consensus 50 ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liD 129 (476)
++|++|+|||||+++|.... .......|+|++.....+++++..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-------------------------------QKVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-------------------------------ccccCCCCcccccceEEEeeCCeEEEEEE
Confidence 58999999999999984210 01112357777777777888888999999
Q ss_pred CCCCcCcHHH------Hhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 130 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 130 tPGh~~f~~~------~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
|||+.+|... +...+ ..+|++++|+|+.... +....+..+...++| +|+|+||+|+.....
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~- 118 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE---------RNLYLTLQLLELGLP-VVVALNMIDEAEKRG- 118 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch---------hHHHHHHHHHHcCCC-EEEEEehhhhccccc-
Confidence 9999877532 22333 4899999999998632 333334455667888 889999999954321
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .....+.+.++ .+++++||.+|.|+.++
T Consensus 119 ---~~---~~~~~~~~~~~------~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 119 ---IK---IDLDKLSELLG------VPVVPTSARKGEGIDEL 148 (158)
T ss_pred ---ch---hhHHHHHHhhC------CCeEEEEccCCCCHHHH
Confidence 11 11222223322 47999999999999885
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=6.2e-17 Score=146.06 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++++|||||+++|... ... ... .|+......+..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~----------------------------~~~----~t~g~~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DID----------------------------TIS----PTLGFQIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCC----------------------------CcC----CccccceEEEEECCE
Confidence 4578999999999999999998521 000 000 111122233445678
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||||++.|...+...+..+|++++|+|++.... | ....+.+..+ ...++| +++++||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---L---DDCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 89999999999988777778889999999999987521 1 1222222222 224666 88999999995431
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. .+++..+++..... ...++++++||++|.|++++
T Consensus 132 -~-------~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 132 -S-------EEEIREALELDKIS-SHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred -C-------HHHHHHHhCccccC-CCceEEEeccCCCCcCHHHH
Confidence 1 12233333222111 13568999999999999884
No 109
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.72 E-value=4.5e-17 Score=127.66 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.1
Q ss_pred CeEEEEEEEEccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEE
Q 011837 274 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 274 p~~~~v~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 353 (476)
||||+|+++|+..|++++|+|.+|++++||++.++|++..++|++|+.++.++++|.|||+|+++|++++..++++|++|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 79999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 011837 354 SS 355 (476)
Q Consensus 354 ~~ 355 (476)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 110
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=6e-17 Score=168.72 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=109.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|+..... ......|+|.+.....+.+++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~------------------------------~~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS------------------------------VVDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCccCCcceEEEEECCE
Confidence 4689999999999999999999532110 1122467777777777888899
Q ss_pred EEEEEeCCCCc---------CcHHHH--hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 124 RFTILDAPGHK---------SYVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~---------~f~~~~--~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
.+.||||||.. .|...+ ..++..+|++|+|+|++++.. .+..+.+..+...++| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999999953 222222 235679999999999998763 3555566666677888 8999999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+|+.. .+......+++...+.... .++++++||++|.|+.++..
T Consensus 332 ~Dl~~----~~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVD----EDRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCC----hhHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 1222334444444443332 35899999999999998654
No 111
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.1e-16 Score=166.75 Aligned_cols=147 Identities=23% Similarity=0.258 Sum_probs=105.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+++|+..... ......|+|.+.....+.+.+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~------------------------------~v~~~~gvT~d~~~~~~~~~~ 85 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREA------------------------------VVEDVPGVTRDRVSYDAEWNG 85 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcc------------------------------cccCCCCCCEeeEEEEEEECC
Confidence 34579999999999999999999532111 112246788888777788889
Q ss_pred eEEEEEeCCCCcC--------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~--------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.||||||+.. |...+..++..||++|+|+|++.+.. ....+.+..++..++| +|+|+||+|
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~D 157 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVD 157 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 9999999999763 34445567789999999999998753 2344556666777888 899999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.... . + ... +...++. ..+++||++|.|+.++
T Consensus 158 l~~~~--~----~----~~~-~~~~g~~-----~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 158 DERGE--A----D----AAA-LWSLGLG-----EPHPVSALHGRGVGDL 190 (472)
T ss_pred CCccc--h----h----hHH-HHhcCCC-----CeEEEEcCCCCCcHHH
Confidence 84321 1 1 111 1233443 2479999999999986
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=1e-16 Score=142.57 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=93.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+++|||||+++|....-... ....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~--------------------------------~~~~t~g~~~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ--------------------------------IIVPTVGFNVESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc--------------------------------eecCccccceEEEEECCEEEE
Confidence 589999999999999999842100000 000111112223456788899
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH------HcCCceEEEEEEccCCCCcCc
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~------~l~i~~iIvviNK~Dl~~~~~ 200 (476)
++||||+.+|...+...+..+|++|+|+|+++... + ......+..+. ..++| +++|+||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999999888888899999999999987531 1 11222222221 13677 88999999994321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .+ +...+....+. ....+++++||++|.|++++
T Consensus 121 ~~---~~----~~~~l~~~~~~-~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 121 TA---VK----ITQLLGLENIK-DKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred CH---HH----HHHHhCCcccc-CceEEEEEeeCCCCCchHHH
Confidence 11 11 22111111001 12357899999999999985
No 113
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.71 E-value=1.1e-16 Score=125.92 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=77.9
Q ss_pred CeEEEEEEEEcc-CCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeE
Q 011837 274 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 274 p~~~~v~~~~~~-~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 352 (476)
||||+|+++|+. .|++++|+|++|++++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++|++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 799999999932 8999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred Eec
Q 011837 353 LSS 355 (476)
Q Consensus 353 l~~ 355 (476)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 984
No 114
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=3.5e-16 Score=139.45 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=94.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|+.++|||||+.+|+. +.... ......+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM--DGYEP---------------------------QQLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC---------------------------CcCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999852 11100 000011222222222233334578
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCccHH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
.||||||++.|.......+..+|++++|+|+++... + ....+.+..++.. ++| +++++||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---Y---KNLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 899999999999888888999999999999987542 1 1223333344433 577 8899999998311
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. .++...+.... ..+++++||++|.|+.++.
T Consensus 120 ~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 120 V----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred H----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 1 11122222322 3579999999999999863
No 115
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=2.8e-16 Score=140.07 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=93.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|.+++|||||+++++... .. ....+ .+.+.....+..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~------------------------~~~~~------t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FV------------------------TDYDP------TIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CC------------------------cccCC------CccceEEEEEEECCEE
Confidence 4799999999999999999986321 10 00000 01111111222333
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+++|...+...+..+|++++|+|+++... |. ...+.+..+.. .++| +++++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 568899999999998888888899999999999987431 11 11222222222 3677 8899999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. .. ..++...+.+..+ ++++++||++|.|+.++
T Consensus 123 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 123 R--KV----SREEGQELARKLK------IPYIETSAKDRLNVDKA 155 (164)
T ss_pred c--ee----cHHHHHHHHHHcC------CcEEEeeCCCCCCHHHH
Confidence 1 00 1122333444432 47899999999999985
No 116
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=1.6e-16 Score=139.59 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|++|+|||||+++|+... ...+..++++.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-------------------------------FITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-------------------------------CcCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999985321 1222334666666665566667 7
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
.+.+||+|||.+|..........++.++.++|....+.................+. .++| +++++||+|+...+
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~---- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVP-IILVGNKIDLRDAK---- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCc-EEEEEEcccCCcch----
Confidence 88999999999995444333444444444444332211000000012222222222 2777 88999999994321
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
........+...+ ..+++++||.+|.|+.++
T Consensus 125 ----~~~~~~~~~~~~~-----~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 125 ----LKTHVAFLFAKLN-----GEPIIPLSAETGKNIDSA 155 (161)
T ss_pred ----hhHHHHHHHhhcc-----CCceEEeecCCCCCHHHH
Confidence 3334444454443 346999999999999884
No 117
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=2.1e-16 Score=140.72 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=96.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|++++|||||+++|+... .. . ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~-------------------------~--~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNE--FS-------------------------E--NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC-------------------------C--CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999995311 10 0 011122222222233333445678
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcCccH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.+||+||+++|.......++.+|++++|+|++.... + .+....+..+... ++| +++++||+|+.....
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 999999999998877777889999999999986431 1 2334444444443 355 889999999843211
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... +++..+....+ ++++++||++|.|+.++
T Consensus 124 ~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 124 VST----EEAQEYADENG------LLFFETSAKTGENVNEL 154 (163)
T ss_pred CCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 111 22233333332 47999999999999985
No 118
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=1.2e-16 Score=142.07 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=99.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|++++|||||+++|+... ...+...+.+.+.....+..++ .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDT-------------------------------FDNQYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-------------------------------CCccCCCceeeeEEEEEEEECCEEE
Confidence 379999999999999999985311 0112234455565555555555 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcC--CceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLG--VTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~~l~--i~~iIvviNK~Dl~~~~~ 200 (476)
.+.+|||||+.+|.......+..+|++++|+|++.... |+ +....+..+ ...+ +| +++++||+|+...
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~-- 120 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---FD---NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDK-- 120 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE-EEEEEEChhcccc--
Confidence 68999999999998888888899999999999987532 11 222233222 2333 76 9999999999321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+... ++...+.+.. +++++++||++|.|+.++
T Consensus 121 ~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 121 RQVST----EEGEKKAKEL------NAMFIETSAKAGHNVKEL 153 (161)
T ss_pred CccCH----HHHHHHHHHh------CCEEEEEeCCCCCCHHHH
Confidence 11111 2222223332 357999999999999985
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=1.9e-16 Score=140.64 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|+.++|||||+++|.. +... +. . .|+......++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~-------------------------~~---~----~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVV-------------------------TT---I----PTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCc-------------------------Cc---C----CccCcCeEEEEECCEEEE
Confidence 589999999999999999832 1100 00 0 111122223455678899
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~---l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+. .+.. .+.| +++++||+|+.... .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~- 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-S- 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-C-
Confidence 99999999998888888899999999999986421 0 12223332 2221 3666 88999999995332 1
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..++ ...+....+. ....+++++||++|.|+.++
T Consensus 118 --~~~i----~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 151 (158)
T cd04151 118 --EAEI----SEKLGLSELK-DRTWSIFKTSAIKGEGLDEG 151 (158)
T ss_pred --HHHH----HHHhCccccC-CCcEEEEEeeccCCCCHHHH
Confidence 1122 2222111111 12457999999999999985
No 120
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=1.6e-16 Score=141.40 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=96.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|++++|||||+++|+... . ..+....++.+.....+..++ .
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK--F-----------------------------KEDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCceeeeEEEEEEEECCEEE
Confidence 489999999999999999985321 1 011112222333333333333 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH---HcCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~---~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.|||+|||++|.......++.+|++++|+|+++... |. +..+.+..++ ..++| ++++.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---FE---ALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 78899999999998888888899999999999988542 11 2222222222 23676 88999999984311
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+ ...++...+.+..+ ++++++||++|.|+.++
T Consensus 122 -~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 122 -E----VTFLEASRFAQENG------LLFLETSALTGENVEEA 153 (161)
T ss_pred -c----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 1 11223333444433 57999999999999985
No 121
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.69 E-value=2.6e-16 Score=139.74 Aligned_cols=146 Identities=17% Similarity=0.171 Sum_probs=91.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|.+|+|||||+++|+. +.... .. ...+.+.....+..++ .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~--~~~~~------------------------~~------~~t~~~~~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ--NHFVD------------------------EY------DPTIEDSYRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCcC------------------------Cc------CCcchheEEEEEEECCEEE
Confidence 5899999999999999999953 11110 00 0000011111222333 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||||+++|...+...+..+|++++|+|.+.... |+ .....+ .+.+. .++| +++|.||+|+....
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 122 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAART 122 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccce
Confidence 57889999999998888888899999999999886421 11 111111 22222 3566 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .++...+.+.. ..+++++||++|.|+.++
T Consensus 123 ~~-------~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 123 VS-------SRQGQDLAKSY------GIPYIETSAKTRQGVEEA 153 (162)
T ss_pred ec-------HHHHHHHHHHh------CCeEEEecCCCCCCHHHH
Confidence 11 12233333333 347999999999999985
No 122
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=6.7e-16 Score=134.55 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=118.1
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.......+|++.|+.|+||||++.++.++.....+.. .+ .+ .....|..|+...+..++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~------------~~-------~~--s~k~kr~tTva~D~g~~~ 63 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEAD------------AS-------SV--SGKGKRPTTVAMDFGSIE 63 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeecc------------cc-------cc--ccccccceeEeecccceE
Confidence 3455678999999999999999999965443222110 00 00 000145578888787777
Q ss_pred eCC-eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEEccCCCC
Q 011837 120 TET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~-~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~-i~~iIvviNK~Dl~~ 197 (476)
..+ ..+.|+|||||++|-..+....+.++++|++||++.+.. ...++.+.++...+ +| ++|++||.|++.
T Consensus 64 ~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~ 135 (187)
T COG2229 64 LDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFD 135 (187)
T ss_pred EcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCC
Confidence 766 899999999999999999889999999999999998742 23356667777777 76 999999999976
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+ |+.+.+.+ +++... .++++|+++|..+++..+.
T Consensus 136 a-~ppe~i~e-------~l~~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 136 A-LPPEKIRE-------ALKLEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred C-CCHHHHHH-------HHHhcc----CCCceeeeecccchhHHHH
Confidence 5 45544333 333211 2578999999999988774
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=2e-16 Score=141.91 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=90.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe-EE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 125 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~-~~ 125 (476)
+|+++|++|+|||||+++|......+ ....+.|++.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI-------------------------------ADYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc-------------------------------cCCCccccCCcceEEEcCCCCeE
Confidence 68999999999999999984211100 00122344443444555665 89
Q ss_pred EEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCCC-ccccccCCCCchHHHHHHHHH-----cCCceEEEEEEc
Q 011837 126 TILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 192 (476)
Q Consensus 126 ~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~g-~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK 192 (476)
.|+||||+. .+...+.+.+..+|++++|+|++.. .. + .+.......+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---V---EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---H---HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999963 2344455556789999999999875 11 0 122222222322 2566 7899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+.... .. .+.+..++... ...+++++||++|.|+.++
T Consensus 124 ~Dl~~~~----~~---~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 124 IDLLDEE----EL---FELLKELLKEL-----WGKPVFPISALTGEGLDEL 162 (170)
T ss_pred hhcCCch----hh---HHHHHHHHhhC-----CCCCEEEEecCCCCCHHHH
Confidence 9984321 11 12222333321 1357999999999999985
No 124
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=1.9e-16 Score=142.33 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=95.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|+.++|||||+.+|.. +... .. ....|.++ ..+...+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~--~~~~-------------------------~~---~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL--GQSV-------------------------TT---IPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc--CCCc-------------------------cc---cCCcccce----EEEEECCE
Confidence 458999999999999999999842 1100 00 00111211 23344678
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~---~l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||||+++|.......++.+|++|+|+|++.... + ....+.+... . ..++| ++++.||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---DEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---H---HHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 89999999999998877778899999999999987421 1 1223333222 1 23566 9999999998432
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... +++...++..... ....+++++||++|.|+.++
T Consensus 126 ~~~-------~~i~~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 126 MKP-------HEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred CCH-------HHHHHHcCCCccC-CCcEEEEEeeCCCCCChHHH
Confidence 111 2233332211111 12357899999999999884
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.69 E-value=1.5e-16 Score=144.92 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE---EeC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF---ETE 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~---~~~ 121 (476)
.++|+++|+.|+|||||++++++..- ... ....|.+.. ...+ ...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~---------------------------~~~---~~t~~~~~~--~~~~~~~~~~ 50 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF---------------------------VNT---VPTKGFNTE--KIKVSLGNSK 50 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc---------------------------CCc---CCcccccee--EEEeeccCCC
Confidence 47899999999999999999853110 000 001122221 1222 224
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCC-CchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKG-GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~-~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
+..+.+|||||+++|...+...++.+|++++|+|++.... +... ....+........++| +++++||+|+... .
T Consensus 51 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~ 125 (183)
T cd04152 51 GITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA-L 125 (183)
T ss_pred ceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc-C
Confidence 5789999999999998777777889999999999987421 0000 0111122222335677 8899999998421 1
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
..+. +..++....+......+++++||++|.|+.++..
T Consensus 126 ~~~~-------~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 126 SVSE-------VEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred CHHH-------HHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 2111 2222211111101235789999999999998643
No 126
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=2.3e-16 Score=140.48 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=95.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|++++|||||+++|+.. .. .....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG--KF-----------------------------SEQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CC-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 48999999999999999998521 10 111122233333334444544 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc-C
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~-~ 199 (476)
.+.++|+||+.+|.......+..+|++++|+|+++... ++ .....+..+.. .++| +++++||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 78899999999999888888899999999999987532 11 11111122222 3566 8999999998431 1
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.. +....+.+.. +++++++|+.+|.|+.++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 123 VSR-------EEAEAFAEEH------GLPFFETSAKTNTNVEEA 153 (164)
T ss_pred CCH-------HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 111 1222233333 346999999999999985
No 127
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=6.1e-16 Score=151.67 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=98.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+...|+++|++|+|||||+++|+...-.+ +.. ..+.|.+.....+..++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------------------vs~------~~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI------------------------VSP------KPQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee------------------------cCC------CCCcccccEEEEEEcCCc
Confidence 45679999999999999999996321110 011 111222222222333567
Q ss_pred EEEEEeCCCCcCc--------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f--------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.|+||||..+. ...+..++..+|++++|+|++.+.. ....+.+..+...+.| +++|+||+|+
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-------~~~~~i~~~l~~~~~p-vilVlNKiDl 125 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-------PGDEFILEKLKKVKTP-VILVLNKIDL 125 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------hhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence 8999999996443 3344556789999999999988532 3455566666666777 8899999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. +.+...+..+.+. +..+ ..+++++||++|.|+.++
T Consensus 126 ~~---~~~~l~~~~~~l~---~~~~-----~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 126 VK---DKEELLPLLEELS---ELMD-----FAEIVPISALKGDNVDEL 162 (292)
T ss_pred CC---CHHHHHHHHHHHH---hhCC-----CCeEEEecCCCCCCHHHH
Confidence 42 1233333333332 2222 347999999999999985
No 128
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=2.5e-16 Score=141.24 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=95.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|.+++|||||+++++. +... .+....+..+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~--~~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE--DSFN-----------------------------PSFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh--CcCC-----------------------------cccccCccceEEEEEEEECCEE
Confidence 58999999999999999999842 1111 00111122222222333333
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.++||||+++|.......+..+|++++|+|+++... |+ +..+.+..+.. .++| +++|.||+|+....
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~ 124 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999998877777899999999999987532 21 22222222222 3566 88999999995321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+... ++...+.+.. ..+++++||++|.|+.++
T Consensus 125 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 125 --VVSK----EEGEALADEY------GIKFLETSAKANINVEEA 156 (167)
T ss_pred --CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 1111 2222333333 347999999999999986
No 129
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=4.9e-16 Score=160.93 Aligned_cols=144 Identities=21% Similarity=0.236 Sum_probs=103.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+.....+ .....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------------------------v~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------eCCCCCCcccceEEEEEECCcEE
Confidence 579999999999999999985321100 11135677777777788888999
Q ss_pred EEEeCCCCcC----c----HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 126 TILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 126 ~liDtPGh~~----f----~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
.||||||+.+ + ......++..+|++|+|+|+..+.. ....+....++..+.| +|+|+||+|+..
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 3 3334556789999999999998753 3445566677778888 899999999732
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. + ..+.++ ..+|+. .++++||.+|.|+.++
T Consensus 124 ~---~-------~~~~~~-~~lg~~-----~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 124 E---E-------ADAYEF-YSLGLG-----EPYPISAEHGRGIGDL 153 (435)
T ss_pred c---h-------hhHHHH-HhcCCC-----CCEEEEeeCCCCHHHH
Confidence 1 1 111111 234443 4789999999999885
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.68 E-value=5.7e-16 Score=138.76 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=90.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+.... ......+.|.+.....+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-------------------------------EVAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------ccCCCCCcccceeEEEEccCceEE
Confidence 5899999999999999999953110 001123345555545556677899
Q ss_pred EEEeCCCCcCc-------H-HHHhhh-ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccC
Q 011837 126 TILDAPGHKSY-------V-PNMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 194 (476)
Q Consensus 126 ~liDtPGh~~f-------~-~~~~~~-~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~D 194 (476)
+||||||+.+. . ...+.. ...+|++++|+|++.... +.. ....+.+..+... ++| +|+|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998431 1 112222 234799999999986421 000 0112223333333 676 899999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+... ....+ ...+.+. ...+++++||++|.|++++
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHH
Confidence 9432 12222 2222221 2457999999999999985
No 131
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.68 E-value=5.3e-16 Score=168.43 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=103.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+|+|. |... ......|+|++.....+.++++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Lt---g~~~----------------------------~vgn~pGvTve~k~g~~~~~~~~ 51 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLT---GARQ----------------------------RVGNWAGVTVERKEGQFSTTDHQ 51 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCCC----------------------------ccCCCCCceEeeEEEEEEcCceE
Confidence 4789999999999999999993 2100 11224789998888888899999
Q ss_pred EEEEeCCCCcCcHHH--------Hhh--h--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 125 FTILDAPGHKSYVPN--------MIS--G--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 125 ~~liDtPGh~~f~~~--------~~~--~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
++++||||+.+|... .+. . ...+|++++|+|++... +.......+..+++| +++++||
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlNK 121 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALNM 121 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEEc
Confidence 999999999887431 111 1 23789999999998753 233344566778998 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+.+.. .+. ..++.+-+.+| +|++|+||.+|+|++++
T Consensus 122 ~Dl~~~~----~i~---id~~~L~~~LG------~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 122 LDIAEKQ----NIR---IDIDALSARLG------CPVIPLVSTRGRGIEAL 159 (772)
T ss_pred hhhhhcc----CcH---HHHHHHHHHhC------CCEEEEEeecCCCHHHH
Confidence 9984221 111 12222233333 57999999999999884
No 132
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.68 E-value=3.3e-16 Score=141.54 Aligned_cols=150 Identities=22% Similarity=0.275 Sum_probs=96.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...+|+++|+.++|||||+.+|+. |... . ...|+......+..++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~~ 59 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVV-------------------------H-------TSPTIGSNVEEIVYKNI 59 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCC-------------------------C-------cCCccccceEEEEECCe
Confidence 357899999999999999999842 2110 0 01122222334556788
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.|+|+||+..|.......+..+|++++|+|+++... + ...++.+. ++.. .++| +++++||+|+...
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~- 131 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA- 131 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-
Confidence 99999999999998888888899999999999987531 1 11222222 2222 2466 8999999999432
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. +++.+. +...... ...++++++||++|.|++++
T Consensus 132 ~~~---~~i~~~----l~~~~~~-~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 132 MTP---AEISES----LGLTSIR-DHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred CCH---HHHHHH----hCccccc-CCceEEEecccCCCCCHHHH
Confidence 111 222222 2110011 12467999999999999985
No 133
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.68 E-value=2.2e-15 Score=135.40 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|++++|||||+++++. +... .+....+..+.....+..++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFD-----------------------------TQLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------cCcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999852 1111 11111222232223333443
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH-HH---HcCCceEEEEEEccCCCC
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK---TLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~-~~---~l~i~~iIvviNK~Dl~~ 197 (476)
..+.|||+||+++|.......++.+|++++|+|.+.... ++........+.. .. ..++| ++++.||+|+..
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 128 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPE 128 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccc
Confidence 567889999999998888888899999999999886531 1100111111111 11 12466 899999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
...+ .+++..+++..++ .+++++||++|.|+.++
T Consensus 129 ~~~~-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 129 RQVS-------TEEAQAWCRENGD-----YPYFETSAKDATNVAAA 162 (170)
T ss_pred cccC-------HHHHHHHHHHCCC-----CeEEEEECCCCCCHHHH
Confidence 2212 2234444444432 37899999999999885
No 134
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.68 E-value=3.9e-16 Score=139.65 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|..|+|||||+++|+. +... ......++.+.....+...+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD--DTYT-----------------------------ESYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCCCCccceeEEEEEEEECCEE
Confidence 47899999999999999999852 1110 01112223333333333333
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.+||+||+++|.......++.+|++++|+|+++... |. +..+.+..+.. .++| ++++.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 568999999999998887778899999999999987431 21 23333333333 2466 88999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.-.. ++...+.+.. +++++++||++|.|+.++
T Consensus 124 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 124 --VVDY----SEAQEFADEL------GIPFLETSAKNATNVEQA 155 (166)
T ss_pred --CCCH----HHHHHHHHHc------CCeEEEEECCCCcCHHHH
Confidence 1011 2222333333 357999999999999986
No 135
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=1.6e-15 Score=136.34 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|++++|||||+++|+... .. ......+..+.....+..++ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC-----------------------------cCcCCccceEEEEEEEEECCEEE
Confidence 479999999999999999985321 00 00011112222222344444 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc------CCceEEEEEEccCCCC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l------~i~~iIvviNK~Dl~~ 197 (476)
.+.+||+||+..|.......++.+|++|+|+|+..... ++ ......-.+...+ ++| +++|+||+|+..
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE--SLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEE 123 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhcCccCCCCce-EEEEEECccccc
Confidence 57799999999999888888899999999999987531 11 0111111112222 577 889999999952
Q ss_pred cC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+ ... +.+..+.+..+ .++++++|+++|.|+.++
T Consensus 124 ~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 124 KRQVST-------KKAQQWCQSNG-----NIPYFETSAKEAINVEQA 158 (172)
T ss_pred ccccCH-------HHHHHHHHHcC-----CceEEEEECCCCCCHHHH
Confidence 11 111 22333444433 358999999999999885
No 136
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=9.5e-16 Score=136.39 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 121 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---- 121 (476)
++|+++|+.++|||||+++|.. +... .+..+.+..+.....+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK--GIFT-----------------------------KDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCCCCcEEEEEEEEEEEEcCCCC
Confidence 3799999999999999999842 1100 0111222333322233332
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEEccCCCCcC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~--~l~i~~iIvviNK~Dl~~~~ 199 (476)
...+.||||||+++|...+...++.+|++++|+|+++... |+ .....+..+. ..++| +|+|+||+|+....
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 4679999999999998888888899999999999987432 11 1111111111 23677 88999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+ . ..++...+.+..+ .+++++|+++|.|+.++
T Consensus 123 --~--v--~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (162)
T cd04106 123 --V--I--TNEEAEALAKRLQ------LPLFRTSVKDDFNVTEL 154 (162)
T ss_pred --C--C--CHHHHHHHHHHcC------CeEEEEECCCCCCHHHH
Confidence 1 0 0122333444433 47999999999999884
No 137
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=6.1e-16 Score=140.70 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=95.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|..++|||||+.+|.. +... . .. .|+......++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~-------------------------~---~~----pt~g~~~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV-------------------------T---TI----PTIGFNVETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCc-------------------------c---cc----CCcceeEEEEEECC
Confidence 4458999999999999999998831 1110 0 00 11111222355678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+||+||++.|.......++.+|++|+|+|+++... + ...++.+.... ..++| ++|+.||+|++..
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~---~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---V---VEARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999998888888899999999999986421 1 12222222221 12566 8999999998543
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. . . +++...+.-..+. .....++++||++|+|+.+.
T Consensus 134 ~-~---~----~~~~~~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 134 M-N---A----AEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred C-C---H----HHHHHHhCccccC-CCceEEEeccCCCCCCHHHH
Confidence 1 1 1 2222222111111 12345779999999999985
No 138
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=1.3e-15 Score=166.14 Aligned_cols=153 Identities=24% Similarity=0.258 Sum_probs=110.9
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
+........++|+++|++|+|||||+++|+..... ..+...|+|.+....
T Consensus 267 ~~~~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~------------------------------iv~~~pGvT~d~~~~ 316 (712)
T PRK09518 267 DEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREA------------------------------VVEDTPGVTRDRVSY 316 (712)
T ss_pred ccccccccCcEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCeeEEEEEE
Confidence 34444556789999999999999999999532111 112246788888877
Q ss_pred EEEeCCeEEEEEeCCCCcC--------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011837 117 HFETETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~--------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIv 188 (476)
..++.+..+.||||||... |...+..++..+|++|+|+|++.+.. ....+.+..++..++| +|+
T Consensus 317 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~Lr~~~~p-vIl 388 (712)
T PRK09518 317 DAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRMLRRAGKP-VVL 388 (712)
T ss_pred EEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEE
Confidence 8888899999999999653 45556667889999999999998753 3444566677778888 899
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+.... . .... +...++. ..+|+||++|.|+.++
T Consensus 389 V~NK~D~~~~~---~-------~~~~-~~~lg~~-----~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 389 AVNKIDDQASE---Y-------DAAE-FWKLGLG-----EPYPISAMHGRGVGDL 427 (712)
T ss_pred EEECcccccch---h-------hHHH-HHHcCCC-----CeEEEECCCCCCchHH
Confidence 99999983211 0 1111 1223443 3579999999999986
No 139
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=2.5e-16 Score=141.56 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+++|... .. .. ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~-------------------------~~-------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EF-------------------------MQ-------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CC-------------------------CC-------cCCcCceeEEEEEECCEEEE
Confidence 5899999999999999998421 00 00 11122222234556788999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
++||||+.+|.......+..+|++++|+|+++... + ....+.+..+.. .+.| +++|.||+|+... .+
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~- 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LS- 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CC-
Confidence 99999999998888788899999999999876421 1 122232222221 2355 8999999999432 11
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. +++..+++..++.....+.++++||++|.|+.++
T Consensus 118 --~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 118 --V----EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred --H----HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 1 2222222211111012357889999999999985
No 140
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=6.4e-16 Score=136.31 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=95.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|++|+|||||+++|+...... .....+.|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------------VSDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------------ccCCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999985321100 01134566666666677788899
Q ss_pred EEEeCCCCcCcHHH--------HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEccCCC
Q 011837 126 TILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~f~~~--------~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~Dl~ 196 (476)
+++||||+.++... +...+..+|++++|+|+.... +........ ..+.| +++|+||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL----------DEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC----------CHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 99999998776432 344667999999999999743 333344444 34566 89999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... . . ... ....+++++||++|.|+.++
T Consensus 121 ~~~--~--~---------~~~------~~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 121 PDS--E--L---------LSL------LAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred Ccc--c--c---------ccc------cCCCceEEEECCCCCCHHHH
Confidence 321 1 1 111 12458999999999999985
No 141
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=1.3e-15 Score=135.34 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++++|||||+++|+... ... ......+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDT--FDP---------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CCc---------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999985211 100 011122222222222222234678
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.|+||||+++|.......++.+|++++|+|++.... |+ .....+..+.. .++| +++++||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 999999999998777777889999999999886432 11 11222222222 3566 7899999999532212
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ++...+.+.. .++++++|+++|.|+.++
T Consensus 125 ~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 125 R-------EEGLKFARKH------NMLFIETSAKTRDGVQQA 153 (161)
T ss_pred H-------HHHHHHHHHc------CCEEEEEecCCCCCHHHH
Confidence 1 1222333332 357999999999999985
No 142
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=6.1e-16 Score=137.42 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=87.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|. |.. ...+ .|.. +.+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~---~~~-----------------------------~~~~---~~~~-----v~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ---GNY-----------------------------TLAR---KTQA-----VEFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc---CCC-----------------------------ccCc---cceE-----EEECCC--C
Confidence 79999999999999999973 110 0000 1111 111111 2
Q ss_pred EEeCCCC----cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh----~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+|||||. .++...++.++..+|++++|+|++.+.. ....+.+.. ..+.| +++++||+|+... .
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~--~- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDA--D- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCcc--c-
Confidence 7999995 5677777888899999999999997642 122222221 23566 8899999999432 1
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. +.+..+++..++. .|++++||++|.|++++.
T Consensus 108 --~----~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 --V----AATRKLLLETGFE----EPIFELNSHDPQSVQQLV 139 (158)
T ss_pred --H----HHHHHHHHHcCCC----CCEEEEECCCccCHHHHH
Confidence 1 2234445555542 489999999999999853
No 143
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1e-15 Score=141.62 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=96.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC---C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~ 122 (476)
++|+++|.+++|||||+++|+. +... ......+..+.....+..+ .
T Consensus 1 ~KivivG~~~vGKTsli~~l~~--~~~~-----------------------------~~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH--GIFS-----------------------------QHYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCceeEEEEEEEEEECCCCE
Confidence 4799999999999999999853 2111 0011112223333333333 4
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-------HcCCceEEEEEEccCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-------~l~i~~iIvviNK~Dl 195 (476)
..+.||||||++.|...+...++.+|++|+|+|.+.... |+ ...+.+..+. ..++| +|+|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 678999999999998877778899999999999886431 11 1111111111 13566 8999999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... . ...+++..+.+..++ .+++++||++|.|+.+++.
T Consensus 123 ~~~~--~----~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 123 KKRL--A----KDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred cccc--c----cCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 4211 0 112334445555442 3799999999999998643
No 144
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.67 E-value=8.8e-16 Score=136.62 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|+.++|||||+.+|. .|... ...+ .-|.. ...++.....+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~--~~~~~-------------------------~~~p---t~g~~----~~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK--LGEIV-------------------------TTIP---TIGFN----VETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh--cCCCc-------------------------ccCC---CCCcc----eEEEEECCEEE
Confidence 379999999999999999983 22110 0000 11111 12344567889
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.||||||+.+|.......++.+|++|+|+|++.... + .+..+.+..+.. .+.| ++++.||+|+.... .
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-S 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-C
Confidence 999999999998888888899999999999986321 1 133333333221 2455 89999999994321 1
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. +++.+ .+....+. ...+.++++||++|.|+.++
T Consensus 119 ~---~~i~~----~~~~~~~~-~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 119 A---AEVTD----KLGLHSLR-NRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred H---HHHHH----HhCccccC-CCCEEEEEeeCCCCCCHHHH
Confidence 1 12211 12110111 12457889999999999985
No 145
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=6.7e-16 Score=138.63 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=95.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|+. +.... ......|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~--~~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD--KRFQP---------------------------VHDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCCC---------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 47999999999999999999842 11100 00011222222222222223357
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc-Cc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-NW 200 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~-~~ 200 (476)
+.+|||||+++|.......+..+|++++|+|++.... ++ .....+..++. .++| +|+|.||+|+... ..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~ 127 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV 127 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC
Confidence 8999999999988877778899999999999986432 11 22223333333 2566 8999999999421 11
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+. ++...+.+.. ..+++++||++|.|+.++
T Consensus 128 ~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 128 SY-------EEGEAFAKEH------GLIFMETSAKTASNVEEA 157 (168)
T ss_pred CH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 11 2233333433 347999999999999985
No 146
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=6.7e-16 Score=138.44 Aligned_cols=151 Identities=19% Similarity=0.168 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|+.|+|||||+++|.. +.... .....++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 4569999999999999999999842 21110 0112223334444455555
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
..+.++|+||+.+|.......+..+|++++|+|+..+.. +. .....+..+.. .++| +++++||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 457889999999999888888999999999999986531 11 11122222222 3566 688999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. +...+..+.+. +. ...+++++|+++|.|+.++
T Consensus 127 ~~---~i~~~~~~~~~---~~------~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 127 RR---EVSQQRAEEFS---DA------QDMYYLETSAKESDNVEKL 160 (169)
T ss_pred cc---ccCHHHHHHHH---HH------cCCeEEEeeCCCCCCHHHH
Confidence 21 11111222222 11 1347999999999999985
No 147
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=5e-16 Score=169.25 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=109.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|+...-.+ .....|+|.+.....+.+++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------------------------VNDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------------------------cCCCCCCCcCcceeEEEECCC
Confidence 45899999999999999999996321100 012456777776677788889
Q ss_pred EEEEEeCCCCc---------CcHHHH--hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 124 RFTILDAPGHK---------SYVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~---------~f~~~~--~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
.+.||||||+. +|...+ ..++..+|++++|+|++.+.. .|....+..+...+.| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999964 222222 345678999999999998863 4566666667777888 8999999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+|+.. ++..+.+.+.+...+.... ..+++++||++|.|+.++.+
T Consensus 571 ~DL~~----~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMD----EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCC----hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 2223334444443333222 35789999999999998654
No 148
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=4.7e-16 Score=138.72 Aligned_cols=146 Identities=21% Similarity=0.206 Sum_probs=91.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
.+|+++|++|+|||||+++|+... ... +..+ .+.+.....+.. ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~--~~~------------------------~~~~------t~~~~~~~~~~~~~~~~ 48 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH--FVD------------------------DYDP------TIEDSYRKQIEIDGEVC 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCc------------------------ccCC------chhhhEEEEEEECCEEE
Confidence 379999999999999999995311 110 0000 000111112222 235
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||||+++|.......+..+|++++|+|++.... |+ ....... +... .++| +++|+||+|+....
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~ 121 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESER 121 (164)
T ss_pred EEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 78899999999998888788899999999999987421 11 1111111 1222 2566 88999999984321
Q ss_pred -ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. +....+.+.. ..+++++||++|.|+.++
T Consensus 122 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 122 VVST-------EEGKELARQW------GCPFLETSAKERVNVDEA 153 (164)
T ss_pred eEcH-------HHHHHHHHHc------CCEEEEeecCCCCCHHHH
Confidence 111 2222333332 357999999999999986
No 149
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.67 E-value=8.2e-16 Score=137.39 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=95.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|.+++|||||+++|+. +.. ..+..+.++.+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTR--NEF-----------------------------NLDSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CCC-----------------------------CCCCCCccceEEEEEEEEECCEE
Confidence 37899999999999999999942 110 001112233333334444444
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.++|+||+++|.......+..+|++|+|+|+.+... ++ ...+.+..+.. .++| +++|+||+|+....
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~ 124 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR 124 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 468899999999988877778889999999999986331 11 12222222222 2466 88999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+. ..++...+.... .++++++||++|.|+.++
T Consensus 125 --~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 125 --AV----PTEEAKAFAEKN------GLSFIETSALDGTNVEEA 156 (165)
T ss_pred --cC----CHHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 11 112233333332 357999999999999985
No 150
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=1.8e-15 Score=135.42 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=92.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|+.|+|||||+++++. +...... .+ .-+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~~------------------------~~---t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRESY------------------------IP---TIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCc------------------------CC---cchheE-EEEEEECCEEEEE
Confidence 6899999999999999999852 2111000 00 000000 1111222344678
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccCCCCc-
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 198 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~Dl~~~- 198 (476)
.++||||+++|.......++.+|++|+|+|.+.... | ...+..+..+.. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998877777889999999999987542 1 122233333332 3577 8899999999431
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+... ++...+.... .++++++||++|.|+.++
T Consensus 125 ~v~~-------~~~~~~~~~~------~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 125 EVSS-------NEGAACATEW------NCAFMETSAKTNHNVQEL 156 (165)
T ss_pred eecH-------HHHHHHHHHh------CCcEEEeecCCCCCHHHH
Confidence 1111 1112222222 347999999999999985
No 151
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.67 E-value=1e-15 Score=136.68 Aligned_cols=147 Identities=15% Similarity=0.178 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
++|+++|++++|||||+++|+... . ..+....+..+.....+.. ...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR--F-----------------------------VSKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCccceeEEEEEEEECCeEE
Confidence 489999999999999999985311 0 0111122223333223333 346
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--------cCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--------l~i~~iIvviNK~Dl 195 (476)
.++||||||+++|.......+..+|++|+|+|+++... ++ ...+.+..+.. .+.| +++|+||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 78899999999998777777889999999999987431 11 11112222211 2355 8999999999
Q ss_pred CCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... ..+. ++...+.... ..+++++||++|.|+.++
T Consensus 123 ~~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 123 TKHRAVSE-------DEGRLWAESK------GFKYFETSACTGEGVNEM 158 (168)
T ss_pred ccccccCH-------HHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 421 1111 2222233332 247999999999999986
No 152
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=2.2e-15 Score=132.72 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=96.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
++|+++|++++|||||+++|+...- ..+..+....+.....+.. ...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF-------------------------------DENYKSTIGVDFKSKTIEIDGKTV 49 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-------------------------------CCccCCceeeeeEEEEEEECCEEE
Confidence 4799999999999999999852111 0011112222333333333 346
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.++|+||+..|.......+..+|++++|+|+.+... + ......+..+... +.| +++++||+|+...
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~-- 120 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---F---ENLDKWLKELKEYAPENIP-IILVGNKIDLEDQ-- 120 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEEccccccc--
Confidence 78999999999999988888999999999999987421 1 1223333344433 366 8999999999411
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+ ...+++..+.... ..+++.+|+++|.|+.++
T Consensus 121 ~~----~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 121 RQ----VSTEEAQQFAKEN------GLLFFETSAKTGENVEEL 153 (159)
T ss_pred cc----ccHHHHHHHHHHc------CCeEEEEecCCCCCHHHH
Confidence 11 1123333344332 357999999999999884
No 153
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.66 E-value=5.9e-16 Score=137.52 Aligned_cols=148 Identities=21% Similarity=0.233 Sum_probs=92.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CCeEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 125 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~~ 125 (476)
+|+++|.+|+|||||+++|.. +... .. ....|.++ ..... ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~--~~~~-------------------------~~---~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH--AELV-------------------------TT---IPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc--CCcc-------------------------cc---cCccCcce----EEEEeCCceEE
Confidence 489999999999999999842 1100 00 00111111 11222 34789
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~---~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.++|+||+..|...+...+..+|++|+|+|+.+... + ....+.+..+ + ..++| +++|+||+|+... ..
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGA-LT 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccC-cC
Confidence 999999999998888778899999999999987531 1 1222222222 1 14677 8999999999432 11
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.++ +...+....+......+++++||++|.|+.++
T Consensus 119 ---~~~----i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 119 ---AEE----ITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred ---HHH----HHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 112 22222111111112467999999999999985
No 154
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=7.8e-16 Score=137.72 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|..|+|||||+++|+. +.... .....+.++.....+..+ ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD--DSFTS-----------------------------AFVSTVGIDFKVKTVFRNDKRV 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 6899999999999999999852 11100 000111122222222222 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.+|||||+++|.......++.+|++++|+|.+.... |+ +..+.+..+... +.| +++|+||+|+....
T Consensus 51 ~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~- 122 (165)
T cd01865 51 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER- 122 (165)
T ss_pred EEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc-
Confidence 78999999999998888888899999999999876421 21 223323333332 355 89999999994321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... .++...+.+..+ .+++++||++|.|+.++.
T Consensus 123 -~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 123 -VVS----SERGRQLADQLG------FEFFEASAKENINVKQVF 155 (165)
T ss_pred -ccC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 101 112222333333 479999999999999863
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=9.7e-16 Score=141.76 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=92.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|.... ......+|+|.+... +...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-------------------------------~~~~~~~~~t~~~~~--~~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-------------------------------VRVGKRPGVTRKPNH--YDWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------CccCCCCceeeCceE--Eeec--
Confidence 35799999999999999999984210 011123466665433 2333
Q ss_pred EEEEEeCCCC-----------cCcHHHHh----hhccccCEEEEEEECCCCcc-ccccC---CCCchHHHHHHHHHcCCc
Q 011837 124 RFTILDAPGH-----------KSYVPNMI----SGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 124 ~~~liDtPGh-----------~~f~~~~~----~~~~~aD~avlVVda~~g~~-e~~~~---~~~qt~e~l~~~~~l~i~ 184 (476)
.+++|||||+ +.|...+. .++..+|++++|+|+....- ...+. ...+..+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 33433221 24556789999999865210 00000 012345566677778898
Q ss_pred eEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc---CCCeeEEeeecccccccccc
Q 011837 185 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 ~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~ipvSa~~g~~i~~~ 243 (476)
+++|+||+|+... .+ +..+++.. .++... ....+++++||++| |++++
T Consensus 133 -~iiv~NK~Dl~~~--~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 133 -PIVAVNKMDKIKN--RD----EVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred -eEEEEECccccCc--HH----HHHHHHHH---HhcCCccccccCCcEEEEecccC-CHHHH
Confidence 7899999999332 11 12222222 222210 00136899999999 99985
No 156
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.66 E-value=7.1e-16 Score=142.36 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=97.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--eE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
.|+++|..++|||||+.++.+ +.. ..+....++.+.....+..++ ..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~--~~f-----------------------------~~~~~~Ti~~~~~~~~i~~~~~~v~ 50 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTD--DTF-----------------------------CEACKSGVGVDFKIKTVELRGKKIR 50 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHh--CCC-----------------------------CCcCCCcceeEEEEEEEEECCEEEE
Confidence 589999999999999999842 211 111122233344444455555 66
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcCcc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+.||||+|+++|...+...++.+|++|+|+|.++... |+ ...+.+..+.. .++| +|+|.||+|+... .
T Consensus 51 l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~--~ 121 (202)
T cd04120 51 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD--R 121 (202)
T ss_pred EEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--c
Confidence 8999999999999888888999999999999987532 21 22222223332 2466 8999999999321 1
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+ + ..++...+.+.. .+..++.+||++|.|+.+++.
T Consensus 122 ~--v--~~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 122 E--I--SRQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred c--c--CHHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 1 0 011222233332 134799999999999998643
No 157
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=6.7e-16 Score=134.46 Aligned_cols=131 Identities=23% Similarity=0.270 Sum_probs=83.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++|+|||||+++|+... . ....|+. .++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~--~---------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE--I---------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc--c---------------------------------cccccee-----EEEcC---e
Confidence 79999999999999999984210 0 0001111 11222 6
Q ss_pred EEeCCCCc----CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~----~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+|||||+. .+.+.+...++.+|++++|+|++.+.. .+..+. ....+.| +|+|+||+|+.+..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~---~~~~~~p-~ilv~NK~Dl~~~~--- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGF---ASIFVKP-VIGLVTKIDLAEAD--- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhH---HHhccCC-eEEEEEeeccCCcc---
Confidence 89999973 445555556789999999999988753 122222 2223445 88899999994311
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .+....+++..++ .+++++||++|.|++++
T Consensus 105 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 105 VD----IERAKELLETAGA-----EPIFEISSVDEQGLEAL 136 (142)
T ss_pred cC----HHHHHHHHHHcCC-----CcEEEEecCCCCCHHHH
Confidence 11 1233344444433 26899999999999884
No 158
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.66 E-value=2.6e-15 Score=136.16 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=95.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe---
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--- 120 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--- 120 (476)
..++|+++|..++|||||+++|.. +.... +....+..+.....+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD--NKFNP-----------------------------KFITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc--CCCCc-----------------------------cCCCccceEEEEEEEEEcCc
Confidence 358999999999999999999842 11100 00111222222111211
Q ss_pred ---------CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEE
Q 011837 121 ---------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLL 187 (476)
Q Consensus 121 ---------~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l----~i~~iI 187 (476)
....+.||||||+++|.......++.+|++++|+|+++... |. ..+..+..+... +.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 23678999999999998888888899999999999986321 11 122222223221 455 89
Q ss_pred EEEEccCCCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 188 LVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 188 vviNK~Dl~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+|.||+|+... ..+. ++...+.+..+ ++++++||++|.|++++.
T Consensus 125 iv~nK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 125 LCGNKADLEDQRQVSE-------EQAKALADKYG------IPYFETSAATGTNVEKAV 169 (180)
T ss_pred EEEeCccchhcCccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 99999999432 1111 22333444433 479999999999999864
No 159
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=1e-15 Score=137.13 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--C
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|+.++|||||+++|.. +.... +....+..+.....+..+ .
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTE--KKFMA-----------------------------DCPHTIGVEFGTRIIEVNGQK 50 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCcccceeEEEEEEEECCEE
Confidence 36899999999999999999842 21110 000011112222223333 3
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
..+.+|||||+++|.......++.+|++|+|+|+++... |+ ...+.+...... +.| +++|.||+|+....
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~ 123 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 568999999999998888888899999999999987431 11 222222222222 355 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+. ..++...+.+.. ..+++++||++|.|+.++
T Consensus 124 --~~----~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 124 --DV----TYEEAKQFADEN------GLLFLECSAKTGENVEDA 155 (166)
T ss_pred --Cc----CHHHHHHHHHHc------CCEEEEEECCCCCCHHHH
Confidence 10 112233333333 357999999999999985
No 160
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=6.7e-16 Score=141.44 Aligned_cols=152 Identities=17% Similarity=0.168 Sum_probs=97.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|+.|+|||||+++|.. +... ....|+......+..++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~--~~~~--------------------------------~~~~T~~~~~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD--DRLA--------------------------------QHVPTLHPTSEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc--CCCc--------------------------------ccCCccCcceEEEEECC
Confidence 3468899999999999999999842 1110 00012222233455677
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++|+||+..|.......+..+|++++|+|+.+... + ....+.+..+. ..+.| +++++||+|+...
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~ 135 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---F---QESKEELDSLLSDEELANVP-FLILGNKIDLPGA 135 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC
Confidence 889999999999988777777889999999999976420 1 11222222222 23577 8899999998532
Q ss_pred CccHHHHHHHHHHHHHHHHhccC----------CcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~----------~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. +++..++..... ......+++++||++|+|+.++
T Consensus 136 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~ 182 (190)
T cd00879 136 -VSE-------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA 182 (190)
T ss_pred -cCH-------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHH
Confidence 122 223333321111 0012357999999999999985
No 161
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=9.3e-16 Score=138.74 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|..++|||||+.+|.. |... +. . .|+......+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~-------------------------~~-----~--~t~~~~~~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESV-------------------------TT-----I--PTIGFNVETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------Cc-----C--CccccceEEEEECCE
Confidence 458999999999999999999831 2110 00 0 122122223445678
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.||||||+.+|.......++.+|++|+|+|+++... + ...++.+..+.. .++| ++|+.||+|+...
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~- 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA- 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC-
Confidence 89999999999998887778899999999999886421 1 233444433322 2466 8999999999432
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.+ ++.+ .+...... ...+.++++||++|.|+.++
T Consensus 130 ~~~~---~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 130 MKAA---EITE----KLGLHSIR-DRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred CCHH---HHHH----HhCccccC-CCcEEEEEeeCCCCCCHHHH
Confidence 1211 2222 11110011 12456889999999999985
No 162
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.65 E-value=4.2e-15 Score=135.90 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=100.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|..++|||||+.++.. +.. ..+....++.+.....+..++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GST-----------------------------ESPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCC-----------------------------CCCCCCcceeEEEEEEEEECCE
Confidence 458999999999999999999842 211 111112233333333344444
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcC
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|...+...++.+|++|||+|.+.... |+ ..+..+..+.. -++| +|||.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~- 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK- 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhc-
Confidence 678899999999999887777899999999999987432 22 22222223332 3566 8999999999321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+ -..++.+.+.+..+ .+++.+||++|.|+.++++
T Consensus 126 -~~----v~~~~~~~~a~~~~------~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 126 -RQ----VATEQAQAYAERNG------MTFFEVSPLCNFNITESFT 160 (189)
T ss_pred -cC----CCHHHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 00 11233444555443 4799999999999999643
No 163
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.65 E-value=2.5e-15 Score=138.61 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|..++|||||+++++. +... .+....++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~--~~f~-----------------------------~~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA--QEFP-----------------------------EEYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--CCCC-----------------------------cccCCccccccceeEEEECCEEE
Confidence 4799999999999999999852 2110 00111111122112233344 5
Q ss_pred EEEEEeCCCCcCcHHH--------HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH------HcCCceEEEE
Q 011837 124 RFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLV 189 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~--------~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~------~l~i~~iIvv 189 (476)
.+.||||||+.+|... ....+..+|++|+|+|++.... |+ .....+..+. ..++| +|+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 6889999998765211 2345688999999999987431 11 1111111111 13567 8899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.||+|+...... ..+++..+.++. ..++++++||++|.|+.+++
T Consensus 123 gNK~Dl~~~~~~------~~~~~~~~~~~~-----~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 123 GNKRDQQRHRFA------PRHVLSVLVRKS-----WKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred EECccccccccc------cHHHHHHHHHHh-----cCCcEEEecCCCCCCHHHHH
Confidence 999999432111 111222332221 13589999999999999964
No 164
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.65 E-value=2e-15 Score=134.41 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=90.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|.+|+|||||+++++. +.... ...+ .+.+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~------------------------~~~~------t~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ--GIFVE------------------------KYDP------TIEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc------------------------ccCC------chhhhEEEEEEECCEEE
Confidence 6899999999999999999852 21110 0000 00011111222333 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.||||||+++|.......++.+|++++|+|.+.... |+ ...+.+..+.. .++| +|++.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDER 122 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 67889999999998877777889999999999876421 11 22222222222 2566 88999999984311
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. ..++...+.+.++ .+++++||++|.|+.++
T Consensus 123 --~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 123 --VV----SREEGQALARQWG------CPFYETSAKSKINVDEV 154 (163)
T ss_pred --ee----cHHHHHHHHHHcC------CeEEEecCCCCCCHHHH
Confidence 10 1112222333332 47999999999999985
No 165
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=5.1e-16 Score=144.03 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=91.6
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+...-.. ....+.|++.....+.+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~ 86 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYA-------------------------------EDQLFATLDPTTRRLRLP 86 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhcc-------------------------------CCccceeccceeEEEEec
Confidence 3456899999999999999999985321000 001223444444444454
Q ss_pred Ce-EEEEEeCCCCcCc-H-------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEE
Q 011837 122 TT-RFTILDAPGHKSY-V-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLV 189 (476)
Q Consensus 122 ~~-~~~liDtPGh~~f-~-------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvv 189 (476)
+. .+.||||||+.+. . ..+...+..+|++++|+|++.+... .+...+...+... ++| +++|
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV 159 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILV 159 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEE
Confidence 43 8999999997331 1 1122235689999999999876421 1223333344433 456 8999
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+||+|+... .... ..+.. ...+++++||++|.|+.++
T Consensus 160 ~NK~Dl~~~----~~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 160 LNKIDLLDD----EELE-------ERLEA------GRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred EEccccCCh----HHHH-------HHhhc------CCCceEEEEcCCCCCHHHH
Confidence 999999432 1111 11221 2357999999999999985
No 166
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.65 E-value=3e-15 Score=134.68 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=92.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|+.|+|||||+++++. +.. ..+....+..+.....+..++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRF-----------------------------PERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCC-----------------------------CCccccceeEEEEEEEEEECCeE
Confidence 47999999999999999999842 111 111122233333333444444
Q ss_pred eEEEEEeCCCCcCcHHH-HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 123 TRFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~-~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
..+.+|||||+++|... ....++.+|++++|+|++.... |. .....+..+.. .++| +|+|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 67899999999998754 4455789999999999987542 11 22223333332 2477 889999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccc---ccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~---g~~i~~~ 243 (476)
... . ..+....+.+.. ..+++++||++ +.|+.++
T Consensus 124 ~~~---~---~~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QIQ---V---PTDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hcC---C---CHHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 210 0 011222223332 35799999999 6666664
No 167
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.65 E-value=8.9e-16 Score=121.61 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.7
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC----ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCce
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 348 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~----~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 348 (476)
|+|+|+++| ++.|++++|+|++|.+++||++.++|++ ..++|++|+.++.++++|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6889999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeeEEec
Q 011837 349 SGFVLSS 355 (476)
Q Consensus 349 ~G~vl~~ 355 (476)
+|++|++
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 168
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=2.4e-15 Score=135.37 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=95.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--eE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|..++|||||+.+++. +... .+....+..+.....+..++ ..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~--~~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK--DVFD-----------------------------KNYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEE
Confidence 689999999999999999953 2111 11111222232223343333 57
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEEccCCCCcCcc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~---i~~iIvviNK~Dl~~~~~~ 201 (476)
+.||||||+++|.......++.+|++++|+|++.... + ....+.+..+.... .+.+|+|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~-- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA-- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--
Confidence 8999999999998888888899999999999976321 1 12223333332222 12378999999984321
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
......++...+.+..+ .+++++||++|.|++++..
T Consensus 123 --~~~~~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 --QYALMEQDAIKLAAEMQ------AEYWSVSALSGENVREFFF 158 (170)
T ss_pred --cccccHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 11112223333334332 4789999999999998643
No 169
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.65 E-value=1.5e-15 Score=134.69 Aligned_cols=147 Identities=19% Similarity=0.192 Sum_probs=95.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|+.++|||||+++|+... .. + ...|+......+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~------------------------------~--~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV------------------------------T--TIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC------------------------------C--CCCCcCcceEEEEECCEEEE
Confidence 58999999999999999995321 00 0 01111222233455678999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+||+||+..|.......+..+|++++|+|++.... + ....+.+.... ..+.| +++++||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999988777777889999999999987521 0 12333332222 23566 88999999994321
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+++.+.+ ...... ...++++++||++|.|++++
T Consensus 117 -~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 117 -SVSELIEKL----GLEKIL-GRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred -CHHHHHHhh----Chhhcc-CCcEEEEEeeCCCCCCHHHH
Confidence 122333322 211111 12568999999999999985
No 170
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.65 E-value=8.4e-16 Score=137.22 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|.+|+|||||+.+++ .|...+. ....+.+.....+..+ ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~--~~~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV--QGIFVEK------------------------------YDPTIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH--hCCCCcc------------------------------cCCcchheEEEEEEECCEEE
Confidence 589999999999999999985 2221110 0000111111223344 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||||++.|.......++.+|++++|+|.+.... |+ ...+.+..+. ..++| +++++||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67899999999999888888899999999999876431 11 1122222221 13577 89999999994311
Q ss_pred -ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. ++...+.+.. ..+++++||++|.|+.++
T Consensus 123 ~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 123 VVGK-------EQGQNLARQW------GCAFLETSAKAKINVNEI 154 (164)
T ss_pred EEcH-------HHHHHHHHHh------CCEEEEeeCCCCCCHHHH
Confidence 111 1122333333 247999999999999985
No 171
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1.7e-15 Score=139.00 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|..|+|||||+.+|+. +.... .+....+..+.....+..+ ..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~--~~~~~----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD--GAFLN----------------------------GNFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCc----------------------------cCcCCcccceeEEEEEEECCEEE
Confidence 4799999999999999999842 11100 0001111122222222233 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.||||||+.+|.......+..+|++|+|+|++.... |+ ..+..+..+..+ ++| +++|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~- 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER- 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc-
Confidence 78899999999998877777889999999999987431 11 222223333332 566 88999999984211
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+. ..++...+.+.. ..+++++||++|.|+.++.
T Consensus 123 -~~----~~~~~~~l~~~~------~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 123 -VV----KREDGERLAKEY------GVPFMETSAKTGLNVELAF 155 (191)
T ss_pred -cc----CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 00 012233333333 2479999999999999863
No 172
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=1.9e-15 Score=137.80 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|.+|+|||||+++|.. +... .. . .|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~--~~~~-------------------------~~---~----~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN--DRLA-------------------------QH---Q----PTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc--CCCc-------------------------cc---C----CccccceEEEEECC
Confidence 3458999999999999999999842 1100 00 0 11111223344567
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++|+||+..+...+...+..+|++++|+|+++... + ...++.+..+. ..++| +++++||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 899999999999998888888899999999999976421 1 12333333222 24677 8999999998432
Q ss_pred CccHHHHHHHHHHHHH--HHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTP--FLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.+ ++.+.+.- .....+-.......++++||++|.|+.+.
T Consensus 134 -~~~~---~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 134 -ASED---ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred -CCHH---HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHH
Confidence 2222 22222210 00000000012457999999999999984
No 173
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=1.3e-15 Score=139.70 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=91.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--eE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|..|+|||||+++|+. +..... ..+. .+ +........++ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~------------------------~~~t---~~---~~~~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVET------------------------YDPT---IE---DSYRKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------CCCc---hH---hhEEEEEEECCEEEE
Confidence 489999999999999999852 221110 0000 00 00011122333 45
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccCCCCc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~Dl~~~ 198 (476)
+.||||||+++|.......++.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 8899999999999888888899999999999977532 11 22222222221 2466 8899999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+-.. ++...+.+.. +++++++||++|.|+.++..
T Consensus 122 --~~v~~----~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 122 --REVST----EEGAALARRL------GCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred --CccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHHHH
Confidence 11001 1122233333 24799999999999998643
No 174
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.64 E-value=7.4e-16 Score=122.18 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.6
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC--CceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceee
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~--~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
|||+|+++| ++.|++++|+|++|++++||++.++|. +...+|++|+.++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999996 5788999999999999999999999999999998999999
Q ss_pred eEEecCC
Q 011837 351 FVLSSVA 357 (476)
Q Consensus 351 ~vl~~~~ 357 (476)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999864
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=6.2e-15 Score=130.98 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=96.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+++|+...-. ...+ ....+.......+...+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~------------------------~~~~------~~~~~~~~~~~~~~~~~~~ 52 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS------------------------IVSP------KPQTTRNRIRGIYTDDDAQ 52 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE------------------------eccC------CCCceeceEEEEEEcCCeE
Confidence 578999999999999999998531100 0000 1112222222334445678
Q ss_pred EEEEeCCCCcCcH--------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 125 FTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~f~--------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
+.++||||..... ......+..+|++++|+|+..... ......+..+...+.| +++++||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhcc
Confidence 9999999976542 233445788999999999998631 3444555666666788 88999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ..+...+..+.+.. ..+ ..+++++|++++.|++++
T Consensus 125 ~---~~~~~~~~~~~~~~---~~~-----~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 125 K---DKEDLLPLLEKLKE---LGP-----FAEIFPISALKGENVDEL 160 (168)
T ss_pred c---cHHHHHHHHHHHHh---ccC-----CCceEEEEeccCCChHHH
Confidence 2 12223333333322 211 347999999999999884
No 176
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=6.6e-15 Score=133.98 Aligned_cols=154 Identities=17% Similarity=0.238 Sum_probs=96.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|..++|||||+.+++. +.. ..+....+..+.....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~--~~f-----------------------------~~~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE--GEF-----------------------------DEDYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCC-----------------------------CCCCCCccceEEEEEEEEECCEEE
Confidence 4799999999999999999853 211 011111122222223344444 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.+|||+|+++|.......++.+|++++|+|.++... |+ ...+.+..++.. .+| |+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~-~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP--ILVGTKYDLFAD-L 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE--EEEEEchhcccc-c
Confidence 68999999999998877777899999999999887432 11 222223333332 233 578999999421 1
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+.+.-+.+.++...+.+..+ .+++++||++|.|+++++.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111122344444544443 4799999999999999643
No 177
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=3.3e-15 Score=137.91 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=90.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--eE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~ 124 (476)
+|+++|+.|+|||||+++|+. +.... .....+.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY--DTFEP------------------------------KYRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCc------------------------------cCCCchhhheeEEEEECCEEEE
Confidence 589999999999999999853 11110 000011111122333444 57
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEccCCCCcCccHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
+.|||+||+.+|.......+..+|++|+|+|+.+... ++.......++.... ..++| +|+++||+|+.... ...
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~-~~v 123 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEE-RQV 123 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-ccc
Confidence 8999999999998777778889999999999987431 110011111221111 13677 88999999984321 100
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..+... .... ..+ ..+++++||++|.|+.++.
T Consensus 124 ~~~~~~----~~~~-~~~----~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 124 PAKDAL----STVE-LDW----NCGFVETSAKDNENVLEVF 155 (198)
T ss_pred cHHHHH----HHHH-hhc----CCcEEEecCCCCCCHHHHH
Confidence 111111 1111 111 3478999999999999863
No 178
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=5.6e-15 Score=138.23 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=95.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC---C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~---~ 122 (476)
++|+++|..++|||||+++|+. +.. ..+...-++.+.....+..+ .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~--~~~-----------------------------~~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK--EGF-----------------------------GKSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc--CCC-----------------------------CCCCCCceeEEEEEEEEEeCCCCE
Confidence 4799999999999999999842 111 01111223334333344443 3
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEEccCCCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-----~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||++.|.......++.+|++|+|+|++.... |+ +..+.+..+... ..+++|+|.||+|+..
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 678999999999888777777899999999999987421 11 222222223222 1123889999999942
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.. + ...++...+.+..+ .+++++||++|.|+.++++
T Consensus 124 ~~--~----v~~~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 124 NR--T----VKDDKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred cc--c----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 11 1 11122333333333 4689999999999999643
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.64 E-value=6.5e-15 Score=135.47 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.... +. ......|.|........ +
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~---~ 69 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-LA----------------------------RTSKTPGRTQLINFFEV---N 69 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------------------------cccCCCCceeEEEEEec---C
Confidence 3568999999999999999999953110 00 00112344544433322 4
Q ss_pred eEEEEEeCCCCc----------CcHHHH---hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEE
Q 011837 123 TRFTILDAPGHK----------SYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 189 (476)
Q Consensus 123 ~~~~liDtPGh~----------~f~~~~---~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvv 189 (476)
..+.||||||+. +|.... +.....++++++|+|+..+.. ....+.+..+...++| ++++
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EEEE
Confidence 789999999963 232222 233345578999999887542 2333445566777888 8899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+||+|+.. ....+...+.+...+... ..+++|+||++|.|+.++
T Consensus 142 ~nK~Dl~~----~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l 185 (196)
T PRK00454 142 LTKADKLK----KGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDEL 185 (196)
T ss_pred EECcccCC----HHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHH
Confidence 99999832 233444555565555442 247899999999999884
No 180
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.64 E-value=1.6e-15 Score=129.55 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|.++|+++||||||+++|... +.....|..+. +.=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~-----------------------------------~~~~~KTq~i~--------~~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE-----------------------------------EIRYKKTQAIE--------YYD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC-----------------------------------CCCcCccceeE--------ecc
Confidence 47899999999999999998321 11111122211 111
Q ss_pred EEEeCCC----CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPG----h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.+||||| +..|.+..+..+..||.+++|.||+.... ..--.++...+.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~----------~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS----------VFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc----------cCCchhhcccCCC-EEEEEECccCcc---c
Confidence 4699999 66778888888889999999999998531 1111345566777 899999999942 2
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.++++ ...++|+..|+. .++++|+++|+|++++
T Consensus 105 ~~~i~----~a~~~L~~aG~~-----~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 105 DANIE----RAKKWLKNAGVK-----EIFEVSAVTGEGIEEL 137 (143)
T ss_pred hhhHH----HHHHHHHHcCCC-----CeEEEECCCCcCHHHH
Confidence 33443 344567777875 5799999999999983
No 181
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=4.7e-15 Score=138.31 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=96.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
+..++|+++|+.++|||||+.+|+. +... +.......+.....+..+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~ 59 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS--SSVE------------------------------DLAPTIGVDFKIKQLTVGG 59 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh--CCCC------------------------------CcCCCceeEEEEEEEEECC
Confidence 3468999999999999999999853 1110 011112222222333333
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHH----cCCceEEEEEEccCC
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~----l~i~~iIvviNK~Dl 195 (476)
...+.||||||+++|.......++.+|++|+|+|++.... |. ...+.+. .+.. .++| +++|+||+|+
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3678999999999998888888899999999999987431 11 1111111 1111 2456 7889999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... . . ..++...+.... .++++++||++|.|+++++.
T Consensus 133 ~~~~--~--i--~~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 133 ESER--D--V--SREEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred cccC--c--c--CHHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 4321 1 0 011222233332 34799999999999999643
No 182
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=2.8e-15 Score=136.45 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=96.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+|+++|+.++|||||+.++. .|... .. . .|+......+...+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~--~~~~~-------------------------~~---~----~T~~~~~~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK--LGEVV-------------------------TT---I----PTIGFNVETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCcc-------------------------cc---C----CccccceEEEEECC
Confidence 345899999999999999999983 22110 00 0 11111122344577
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++||||+++|.......++.+|++|+|+|+++... + ....+.+..... ...| +++|.||.|+...
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---I---GDAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 899999999999998888888899999999999976320 1 123333332221 2455 8999999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. +. +++ ...+....+. ...+.++++||++|.|+.++.
T Consensus 134 ~-~~---~~i----~~~l~~~~~~-~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 134 M-ST---TEV----TEKLGLHSVR-QRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred C-CH---HHH----HHHhCCCccc-CCcEEEEeeeCCCCCCHHHHH
Confidence 1 11 122 2222111111 123567899999999999863
No 183
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=2.2e-15 Score=134.06 Aligned_cols=150 Identities=24% Similarity=0.283 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE--EEEeCCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA--HFETETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~--~~~~~~~ 123 (476)
.+|+++|.+|+|||||+++|+.. .... +. .+.+.+.... .+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~--~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYD--EFVE------------------------DY------EPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCcc------------------------cc------CCcchhhEEEEEEECCEEE
Confidence 37999999999999999998531 1100 00 0000011111 1222346
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEccCCCCc-Ccc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTV-NWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~Dl~~~-~~~ 201 (476)
.+.++||||+.+|.......++.+|++++|+|...... |.......+.+.... ..++| +++|+||+|+... ...
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~ 124 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS 124 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC
Confidence 78999999999999888889999999999999876421 110012222222221 24677 8999999999431 111
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+ ....+.+.++ .+++++||++|.|+.++.
T Consensus 125 ~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 125 SE-------EAANLARQWG------VPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HH-------HHHHHHHHhC------CeEEEeeCCCCCCHHHHH
Confidence 11 1222233332 479999999999999963
No 184
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=7.7e-15 Score=131.53 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
.+|+++|..++|||||+++++. +.... +....+.++.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 3799999999999999999852 21110 01111222222333333 346
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-c-CCceEEEEEEccCCCCcCcc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l-~i~~iIvviNK~Dl~~~~~~ 201 (476)
.+.+|||||+++|.......+..+|++|+|+|.+.... +. .....+..+.. . ++| +|+|+||+|+......
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK 122 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC
Confidence 78899999999887655566788999999999987532 11 11112222222 2 577 8999999999422110
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.....+.+. ...+++++||++|.|++++.
T Consensus 123 --------~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 123 --------AKQITFHRK------KNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred --------HHHHHHHHH------cCCEEEEEeCCCCCChHHHH
Confidence 111122222 13579999999999999963
No 185
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=2.3e-15 Score=135.62 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=95.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|+.|+|||||+++|... ... ......|.+ ...+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~--~~~----------------------------~~~~t~g~~----~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE--DIS----------------------------HITPTQGFN----IKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC--CCc----------------------------ccCCCCCcc----eEEEEECC
Confidence 33689999999999999999998321 000 000112222 22345567
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH----HHHcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~----~~~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++|+||+..|...+...++.+|++++|+|+..... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 899999999999988777778899999999999976321 1 122222221 1234677 8899999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ..+++.+ .+....+. ....+++++||++|+|++++
T Consensus 131 ~----~~~~i~~----~l~~~~~~-~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 131 A----PAEEIAE----ALNLHDLR-DRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred C----CHHHHHH----HcCCcccC-CCeEEEEEeECCCCCCHHHH
Confidence 1 1222222 12111111 12346889999999999984
No 186
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.8e-15 Score=131.26 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=102.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE--EEe
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FET 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~--~~~ 120 (476)
....+|+++|..++|||||+-|+. .|.. .+-. -.||...+.. ...
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfv--k~~F-----------------------------~e~~--e~TIGaaF~tktv~~ 49 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFV--KDQF-----------------------------HENI--EPTIGAAFLTKTVTV 49 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhh--hCcc-----------------------------cccc--ccccccEEEEEEEEe
Confidence 356899999999999999998773 2222 1111 1233333322 222
Q ss_pred C--CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE--EEEEccCCC
Q 011837 121 E--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL--LVVNKMDDH 196 (476)
Q Consensus 121 ~--~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI--vviNK~Dl~ 196 (476)
. ..+|.+|||.|+++|....-.+.+.|++||+|.|.++-.. | .+.+.-+..++...-|.++ +|.||+||.
T Consensus 50 ~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~S---F---~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 50 DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEES---F---EKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHH---H---HHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 3 4678899999999998888888899999999999987432 3 2555555666665545454 499999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. .+-.+ ++...+..+. ...++.+||++|.|+.++
T Consensus 124 ~~--R~V~~----~ea~~yAe~~------gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 124 ER--REVEF----EEAQAYAESQ------GLLFFETSAKTGENVNEI 158 (200)
T ss_pred hc--ccccH----HHHHHHHHhc------CCEEEEEecccccCHHHH
Confidence 31 12223 3444455554 457999999999999986
No 187
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.63 E-value=1.8e-15 Score=136.47 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
++|+++|++++|||||+.+|+. +..... ... ...+.....+..+ ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~--~~~~~~-----------------------------~~~-t~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN--DAFPEE-----------------------------YVP-TVFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCC-ceeeeeEEEEEECCEEE
Confidence 4799999999999999998853 211100 000 0011111122233 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHH-HHHHH--HcCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAK--TLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~-l~~~~--~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.+|||||+.+|........+.+|++++|+|..+... |+ ...+. +..+. ..++| +++++||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 57899999999998777677889999999999887521 11 11111 12222 24676 889999999843211
Q ss_pred cHHHHH------HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
...... -..++...+.+..+. .+++.+||++|.|+.++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~ 165 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTV 165 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHH
Confidence 110000 012233444555443 36999999999999986
No 188
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=5.5e-15 Score=130.29 Aligned_cols=147 Identities=22% Similarity=0.230 Sum_probs=93.3
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEE
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|+.|+|||||+++|.. +... .+. .+ |+......+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~--~~~~------------------------~~~-----~~--t~~~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG--GQFS------------------------EDT-----IP--TVGFNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc--CCCC------------------------cCc-----cC--CCCcceEEEEECCEEEEE
Confidence 78999999999999999842 1000 000 11 111122234456688999
Q ss_pred EeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCccHH
Q 011837 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 128 iDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
+|+||+..|...+...+..+|++++|+|++.... + .+.++.+..+.. .++| +++++||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999999888888999999999999986321 0 133333333322 4677 88999999984321
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+++.+.+. +... . ...++++++|+++|.|+.++
T Consensus 118 ~~~~~~~~~~--~~~~--~-~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 118 SVDELIEQMN--LKSI--T-DREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred CHHHHHHHhC--cccc--c-CCceEEEEEEeccCCChHHH
Confidence 1111211111 0111 0 12468999999999999884
No 189
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=5.6e-15 Score=135.35 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=94.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|+.|+|||||+.+++. +..... .. + ..+.+.. ....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~--~~~~~~----------------------~~--~---t~~~~~~-~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQ--NHFIDE----------------------YD--P---TIEDSYR-KQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc--CCCCcC----------------------cC--C---chhhEEE-EEEEECCEEE
Confidence 458999999999999999999853 111000 00 0 0011110 1112222345
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.||||||+++|.......+..+|++++|+|+++... |+ ...+.+..+.. -++| +++++||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 68899999999999888888899999999999987532 11 22222222222 2566 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. .. .++...+.+.. ..+++++||++|.|+.++.
T Consensus 127 --~--i~--~~~~~~~~~~~------~~~~~e~Sak~~~gi~~~~ 159 (189)
T PTZ00369 127 --Q--VS--TGEGQELAKSF------GIPFLETSAKQRVNVDEAF 159 (189)
T ss_pred --c--cC--HHHHHHHHHHh------CCEEEEeeCCCCCCHHHHH
Confidence 0 00 11122223332 2479999999999999863
No 190
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=8.8e-15 Score=135.20 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=97.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|+.|+|||||+.+|+. +... .+....+.++.....+..++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD--NTFS-----------------------------GSYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCcCccccceeEEEEEEECCE
Confidence 368999999999999999999842 1110 00111122233333444444
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcC
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||++.|.......++.+|++++|+|+++... |. ...+.+..+... .+| ++||+||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 568899999999998888888899999999999987431 11 222233333322 355 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
. ...++...+.+.. +.+++++||++|.|+.+++.
T Consensus 127 --~----~~~~~~~~~~~~~------~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 --V----VETEDAYKFAGQM------GISLFETSAKENINVEEMFN 160 (199)
T ss_pred --c----cCHHHHHHHHHHc------CCEEEEEECCCCcCHHHHHH
Confidence 0 0112233333333 24799999999999998643
No 191
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=7.2e-15 Score=131.61 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|+.++|||||+++|+. |.... ..+. .....++.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~--~~~~~-------------------------~~~~-~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS--EEFPE-------------------------NVPR-VLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CcCCc-------------------------cCCC-cccceEeee---eecCCeEEE
Confidence 3799999999999999999853 21110 0000 000112111 122345789
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCcCccH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.+|||||+..|...+...+..+|++++|+|++.... |+ +..+ .+..++. .++| +++|+||+|+.... ..
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-ch
Confidence 999999999888777777899999999999887532 11 1111 2223332 2566 89999999994321 11
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ...+.+..+.+.+. ...+++++||++|.|++++.
T Consensus 122 ~---~~~~~~~~~~~~~~----~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 122 A---GLEEEMLPIMNEFR----EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred h---HHHHHHHHHHHHHh----cccEEEEeccccccCHHHHH
Confidence 1 11222222222221 01279999999999999853
No 192
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.5e-15 Score=146.89 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-C
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-E 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~ 121 (476)
|-...|+++|.+|||||||+++|....-.+ ....+.|+......+.+ +
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~v-------------------------------a~ypfTT~~p~~G~v~~~~ 204 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKI-------------------------------ADYPFTTLHPNLGVVRVDD 204 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCcc-------------------------------CCCCCceeCceEEEEEeCC
Confidence 445689999999999999999984311111 01234566666666666 5
Q ss_pred CeEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011837 122 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvv 189 (476)
+..|+++|+||..+ +....++.+..+|++|+|+|++.... + .+.......+.. .+.| +++|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~---e~~~~~~~EL~~~~~~L~~kp-~IIV 277 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---V---EDYKTIRNELEKYSPELADKP-RILV 277 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---H---HHHHHHHHHHHHhhhhcccCC-eEEE
Confidence 67899999999532 34455666778999999999986321 1 122222222222 2566 8899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+||+|+.... +... +.+..+++.. ..+++++||++++|++++.+
T Consensus 278 ~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 278 LNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 9999994321 1111 1122222322 24799999999999998643
No 193
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=2.7e-15 Score=140.10 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=96.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|..++|||||+.+|+. +... + ...|+...+....+....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~--~~f~-------------------------~-------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME--RRFK-------------------------D-------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCC-------------------------C-------CCCccceEEEEEEeeEEEE
Confidence 4799999999999999999852 1110 0 0112222222233456779
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcCccH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.||||||++.|.......++.+|++|+|+|+++... |+ ...+.+..+.. .++| +|+|.||+|+... +..
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~-~~~ 118 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEE-GAL 118 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc-ccc
Confidence 999999999998877778899999999999987421 11 12222222222 2466 8999999999431 000
Q ss_pred --------------HHHHHHHHHHHHHHHhccC--------CcCCCeeEEeeecccccccccccc
Q 011837 203 --------------ERYDEIESKMTPFLKASGY--------NVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 203 --------------~~~~~~~~~l~~~l~~~~~--------~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
....-..++...+.++.+. .+...++++++||++|.|+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 0001112233333443320 011135899999999999999644
No 194
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=1.6e-15 Score=151.26 Aligned_cols=144 Identities=19% Similarity=0.189 Sum_probs=92.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 122 (476)
..++|+++|++|+|||||+++|+... .+ .....+.|.+.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~------------------------------v~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY------------------------------AADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee------------------------------eccCCccccCCEEEEEEeCCC
Confidence 45899999999999999999995311 00 011234566666666666 56
Q ss_pred eEEEEEeCCCC-cCc-------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEE
Q 011837 123 TRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh-~~f-------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviN 191 (476)
..+.|+||||. .+. .+.+...+..||++++|+|+++.... .+.......+..+ +.| +|+|+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 79999999997 221 12233457789999999999875421 1221122334443 566 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+|+.. ..... .... + ..+++++||++|.|++++
T Consensus 310 K~Dl~~----~~~v~-------~~~~--~-----~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 310 KIDLLD----EPRIE-------RLEE--G-----YPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred eecCCC----hHhHH-------HHHh--C-----CCCEEEEEccCCCCHHHH
Confidence 999932 11111 1111 1 135899999999999984
No 195
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.62 E-value=4.5e-15 Score=132.77 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=93.6
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEE
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|..++|||||+.+|.. +.... + ...|+......+...+..+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~--~~~~~------------------------~-------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS--ERSLE------------------------S-------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc--CCCcc------------------------c-------ccccCCcceEEEeeCCeEEEE
Confidence 78999999999999999852 11100 0 001111112345567788999
Q ss_pred EeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcCccHHHH
Q 011837 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 205 (476)
Q Consensus 128 iDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~~~~~~~ 205 (476)
||+||+.+|.......++.+|++|+|+|+++... + ...++.+..+.. .++| +++|+||+|+.... ..
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~----~~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR----SV 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC----CH
Confidence 9999999998888888999999999999887431 1 122333332321 4676 89999999984331 12
Q ss_pred HHHHHH--HHHHHHhccCCcCCCeeEEeeeccc------ccccccc
Q 011837 206 DEIESK--MTPFLKASGYNVKKDVQFLPISGLM------GLNMKTR 243 (476)
Q Consensus 206 ~~~~~~--l~~~l~~~~~~~~~~~~~ipvSa~~------g~~i~~~ 243 (476)
.++.+. +..+.+ ...++++++||++ ++|+.++
T Consensus 118 ~~i~~~~~~~~~~~------~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 118 QEIHKELELEPIAR------GRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred HHHHHHhCChhhcC------CCceEEEEeeecCCCChhHHHHHHHH
Confidence 222221 122212 2356789999988 8888874
No 196
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.62 E-value=1.1e-14 Score=131.58 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~ 123 (476)
++|+++|..++|||||+.+++. |.... +....+ .+.....+.. ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~-----------------------------~~~~t~-~~~~~~~~~~~~~~~ 49 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPG-----------------------------EYIPTV-FDNYSANVMVDGKPV 49 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------cCCCcc-eeeeEEEEEECCEEE
Confidence 6899999999999999998842 21110 000000 0110111222 336
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~--l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.||||||+++|.......+..+|++|+|+|.+.... |+ ... .++..+.. -++| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~ 122 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKD 122 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccChh
Confidence 68899999999998777777889999999999987431 21 111 12222222 2466 899999999943211
Q ss_pred cHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+...+ ..++...+.+.++ ..+++++||++|.|++++
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~ 166 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTV 166 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHH
Confidence 1111111 1123333444433 247999999999999985
No 197
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.5e-15 Score=149.74 Aligned_cols=156 Identities=18% Similarity=0.145 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..-.|+++|.+|+|||||+++|....-.+ ....+.|.......+...+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~Giv~~~~~ 206 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNLGVVRVDDE 206 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEEEEEEeCCC
Confidence 34589999999999999999994221111 1124456665555566654
Q ss_pred eEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEE
Q 011837 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvvi 190 (476)
..|.|+||||..+ ....++..+..+|++++|||+...... +...+....+..+.. .+.| +|+|+
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL~~~~~~L~~kP-~IlVl 282 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINELEKYSPKLAEKP-RWLVF 282 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHHHhhhhhhcCCC-EEEEE
Confidence 5699999999532 344566778899999999998721000 000122222233333 2566 78899
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
||+|+.. ++.+. +.+..+.+..++ ..+++++||+++.|+.++.+
T Consensus 283 NKiDl~~----~~el~---~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 283 NKIDLLD----EEEAE---ERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred eCCccCC----hHHHH---HHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 9999842 22222 223333333332 13689999999999998643
No 198
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=3.8e-15 Score=133.62 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=94.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+++|... ... ....|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~-------------------------------~~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK-------------------------------KVAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc-------------------------------cccCcccceEEEEEECCEEEE
Confidence 4799999999999999988421 100 011122222334556788999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCccH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
++|+||+.+|.......+..+|++|+|+|++.... + ...++.+..+.. .++| +++|+||+|+.... +.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CH
Confidence 99999999998888888999999999999987421 1 123333333322 3566 88999999995432 12
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc------ccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG------LNMKT 242 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g------~~i~~ 242 (476)
..+.+.. .+..+.+..+ ...+++++||++| .|+.+
T Consensus 119 ~~i~~~~-~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 119 ADVIEYL-SLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred HHHHHhc-CcccccCCCC----ceEEEEEeEceeCCCCccccCHHH
Confidence 2111111 1111111111 2468999999998 67776
No 199
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.62 E-value=7.9e-15 Score=132.61 Aligned_cols=153 Identities=19% Similarity=0.258 Sum_probs=105.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++..+|.++|..+||||||+.+|. .+.+. ....|+......+...
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~--~~~~~--------------------------------~~~pT~g~~~~~i~~~ 56 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLK--NGEIS--------------------------------ETIPTIGFNIEEIKYK 56 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHH--SSSEE--------------------------------EEEEESSEEEEEEEET
T ss_pred cCcEEEEEEECCCccchHHHHHHhh--hcccc--------------------------------ccCcccccccceeeeC
Confidence 3677999999999999999999983 22110 0112333344556778
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
+..++++|.+|+..+.+.+...+..+|++|+|||+.+..- + .+.++.+..+.. .++| +++++||+|++.
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccC
Confidence 9999999999999998888888899999999999986421 1 245555544332 2566 889999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+- +.+ ++...+....+.....+.++++||++|+|+.+.
T Consensus 130 ~~-~~~-------~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 130 AM-SEE-------EIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp SS-THH-------HHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred cc-hhh-------HHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 32 222 222222222222124678999999999999884
No 200
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.61 E-value=6e-15 Score=140.47 Aligned_cols=150 Identities=18% Similarity=0.322 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEE-eeeeEEEEeCC--
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETET-- 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~~-- 122 (476)
.+|+++|..++|||||+++++. |...+. .. .|+ +.....+..++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~--~~f~~~------------------------------y~-pTi~d~~~k~~~i~~~~ 47 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG--GRFEEQ------------------------------YT-PTIEDFHRKLYSIRGEV 47 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc--CCCCCC------------------------------CC-CChhHhEEEEEEECCEE
Confidence 3799999999999999999852 211100 00 011 11222233333
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---------cCCceEEEEEEcc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---------LGVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---------l~i~~iIvviNK~ 193 (476)
+.+.||||+|+++|.......+..+|++|+|+|.+.... |+...+..+.+...+. .++| +|+|.||+
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~ 123 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKA 123 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECc
Confidence 678899999999997666666789999999999987431 2100111122211111 2566 89999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+... .+... +++..++... ...+++++||++|.|++++
T Consensus 124 Dl~~~--~~v~~----~ei~~~~~~~-----~~~~~~evSAktg~gI~el 162 (247)
T cd04143 124 DRDFP--REVQR----DEVEQLVGGD-----ENCAYFEVSAKKNSNLDEM 162 (247)
T ss_pred cchhc--cccCH----HHHHHHHHhc-----CCCEEEEEeCCCCCCHHHH
Confidence 99421 11111 2333333221 1357999999999999996
No 201
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=1.3e-15 Score=157.10 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=97.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|++|+|||||+++|+...- +. .....|.|.+.....+.+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~------------------------a~------v~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER------------------------AI------VTDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC------------------------cc------cCCCCCcccccEEEEEEECCe
Confidence 347999999999999999999953110 00 112456777777777888899
Q ss_pred EEEEEeCCCCcCcHH--------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f~~--------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.|+||||+.++.. .+...+..+|++++|+|++.+.. .+..+.+.. ..+.| +++|+||+|+
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 999999999876532 23345778999999999987642 122222221 34566 8899999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.... . .. .. ...+++++||++|.|++++.
T Consensus 334 ~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~ 362 (449)
T PRK05291 334 TGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELR 362 (449)
T ss_pred cccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHH
Confidence 4321 1 00 11 13478999999999999853
No 202
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.61 E-value=3.1e-14 Score=133.88 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=114.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+...|+++|++|+|||||++.|+...... ......|. +. .+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~----i~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-IT----VVTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EE----EEecC
Confidence 4566889999999999999999886421100 00011221 11 12236
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+.+++|+||||+. ..++..+..+|++++|+|+..+.. .++.+.+..+...|+|.+|+|+||+|+.. .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~-------~~~~~i~~~l~~~g~p~vi~VvnK~D~~~---~ 148 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFE-------METFEFLNILQVHGFPRVMGVLTHLDLFK---K 148 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCC-------HHHHHHHHHHHHcCCCeEEEEEeccccCC---c
Confidence 7889999999964 667778899999999999998763 57777888888889986677999999943 2
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCC
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 266 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~ 266 (476)
.+.++++.+.++..+...-+ ...+++++||++... +||-++..++..++.+..
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~---~~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~ 201 (225)
T cd01882 149 NKTLRKTKKRLKHRFWTEVY---QGAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKF 201 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCC
Confidence 34466667777664332112 245899999987643 455566667777777654
No 203
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=5.4e-15 Score=131.19 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=92.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|.+++|||||+++|+... ... ...+.++.......+... ..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK--FNE-----------------------------KHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------CcCCccceeEEEEEEEECCEEE
Confidence 479999999999999999995321 100 001112122222223322 34
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC-
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~- 199 (476)
.+.+||+||+..|.......+..+|++++|+|++++.. + .+....+..+.. .++| +++++||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~ 122 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---F---QKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 68999999999888777777789999999999987542 1 112222222222 2466 88999999985321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... +++..+.+.. ..+++++|+++|.|+.++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 123 VSK-------SEAEEYAKSV------GAKHFETSAKTGKGIEEL 153 (162)
T ss_pred CCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 111 2222333333 346899999999999985
No 204
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=6.1e-15 Score=132.31 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE--eCCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~ 123 (476)
++|+++|+.|+|||||+++|+.. .... + ......+.....+. ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~--~~~~-----------------------------~-~~~~~~~~~~~~~~~~~~~~ 48 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG--KFPT-----------------------------E-YVPTVFDNYSATVTVDGKQV 48 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCC-----------------------------C-CCCceeeeeEEEEEECCEEE
Confidence 48999999999999999998531 1100 0 00011111111222 2345
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCcc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~ 201 (476)
.+.+||+||+.+|.......+..+|++++|+|++.... |. ....+.+..+... ++| +++|+||+|+......
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENT 122 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhh
Confidence 78999999999887665566788999999999987321 11 1112223333322 476 8999999999543211
Q ss_pred HHH-----HHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KER-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... ..-..++...+....++ .+++++||++|.|+.++
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEV 164 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHH
Confidence 000 00012333344444432 37999999999999985
No 205
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.61 E-value=4.2e-15 Score=116.89 Aligned_cols=80 Identities=39% Similarity=0.635 Sum_probs=76.4
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeE
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 352 (476)
|||+|+++| ++.|++++|+|++|++++||++.++|++...+|++|+.+++++++|.|||.|+++|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Ee
Q 011837 353 LS 354 (476)
Q Consensus 353 l~ 354 (476)
|+
T Consensus 81 l~ 82 (83)
T cd03696 81 LS 82 (83)
T ss_pred Ec
Confidence 87
No 206
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.61 E-value=8.7e-15 Score=134.44 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=93.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|++++|||||+++|+. +.... + ......|. ......+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~--~~~~~------------------------~--~~~~t~~~--~~~~~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH--HRFLV------------------------G--PYQNTIGA--AFVAKRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCcCC------------------------c--Ccccceee--EEEEEEEEECCEEE
Confidence 4799999999999999999853 11100 0 00001111 11122334444 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCcc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~ 201 (476)
.+.+|||||+++|.......++.+|++++|+|.+.... |+ ..+..+..+... ++| +++|+||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 56799999999887776667789999999999976421 11 122223333333 566 8999999998432100
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... ..+++..+.... ..+++++||++|.|+.++.+
T Consensus 124 ~~~v--~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQV--DFHDVQDFADEI------KAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCcc--CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0011 112333444433 24789999999999998643
No 207
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=1e-14 Score=130.00 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=91.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|.+++|||||+.+++. |..... .+ + ...+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~----------------------~~--~------t~~~~~~~~~~~~~~~~ 49 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEK----------------------YD--P------TIEDFYRKEIEVDSSPS 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC----------------------CC--C------chhheEEEEEEECCEEE
Confidence 6899999999999999998842 221110 00 0 00011111222233 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.||||||+++|.......++.+|++++|+|.++... |. ...+.+..+.. .++| +++|.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~ 122 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESER 122 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhcC
Confidence 57899999999998887778899999999999887421 11 22222222222 3677 88999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.... .+...+.+.. ..+++++||++|.|+.++
T Consensus 123 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 123 --EVSS----AEGRALAEEW------GCPFMETSAKSKTMVNEL 154 (163)
T ss_pred --ccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHH
Confidence 1001 1122222232 247999999999999985
No 208
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=1.4e-14 Score=130.50 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=91.3
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--eEE
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TRF 125 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~~~ 125 (476)
|+++|..++|||||+++++. +..... ....+ .+.....+..++ ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPED-----------------------------YVPTV-FENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCCcE-EeeeeEEEEECCEEEEE
Confidence 58999999999999999853 211100 00001 111111222333 468
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCcCccH
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.+|||||+++|.......+..+|++|+|+|.+.... |+ .... .+..+.. .++| +|+|.||+|+.......
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~ 121 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE---NVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTL 121 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhh
Confidence 999999999997766667889999999999986421 11 1111 1222222 2677 89999999994311000
Q ss_pred HHHH------HHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 203 ERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+.+. -..++...+.+..+. .+++++||++|.|+.++.
T Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf 164 (174)
T smart00174 122 RELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVF 164 (174)
T ss_pred hhhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHH
Confidence 0000 012233444555442 379999999999999863
No 209
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=7.4e-15 Score=132.05 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=92.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++..+|+++|..|+|||||+.+++. +... ..+....+........+..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~----------------------------~~~~~~T~~~~~~~~~~~~~~ 51 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFS----------------------------LNAYSPTIKPRYAVNTVEVYG 51 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCC----------------------------cccCCCccCcceEEEEEEECC
Confidence 4678999999999999999999842 2111 000000011111112233334
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCCCCcC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.++|++|++.|.......+..+|++++|+|+++... |+ ...+.+..+.. .++| +++|+||+|+....
T Consensus 52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~ 124 (169)
T cd01892 52 QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQQ 124 (169)
T ss_pred eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEcccccccc
Confidence 568899999999987766666789999999999976421 10 11121222211 2577 89999999984221
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+ . ...+...+.+.+++. .++++||++|.|+.++
T Consensus 125 --~-~---~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 125 --Q-R---YEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNEL 157 (169)
T ss_pred --c-c---cccCHHHHHHHcCCC-----CCEEEEeccCccHHHH
Confidence 0 0 111223333444432 3589999999999985
No 210
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.60 E-value=9e-15 Score=133.59 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe---CC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~---~~ 122 (476)
++|+++|..++|||||+++|+. +... .+....+..+.. ..+.. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~--~~~~-----------------------------~~~~~t~~~~~~-~~i~~~~~~~ 48 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ--GKFP-----------------------------EEYVPTVFENYV-TNIQGPNGKI 48 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh--CcCC-----------------------------CCCCCeeeeeeE-EEEEecCCcE
Confidence 4799999999999999999853 1110 000011111111 11222 23
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|.......+..+|++++|+|.++... |+ .... .+..... .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 568999999999998877777889999999999987431 11 1111 1111221 3577 89999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
. ..+ .-..++...+....+. .+++++||++|.|+.++..
T Consensus 122 ~-~~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 122 N-LDR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred c-ccC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 0 000 0012233444444432 2789999999999998643
No 211
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=6e-15 Score=133.85 Aligned_cols=148 Identities=20% Similarity=0.191 Sum_probs=91.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|++|+|||||+++|+. +..... + .. .+.......+... +.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~--~~~~~~--------------------~-~~---------t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE--GHFVES--------------------Y-YP---------TIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCccc--------------------c-Cc---------chhhhEEEEEEECCEEE
Confidence 6899999999999999999853 111000 0 00 0000011122233 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH-HHHHH---cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.++||||+.+|.......+..+|++++|+|.+.... ++ ..++.+ .++.. .++| +|+|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 68899999999998777778889999999999987531 10 111111 22222 3566 88999999984211
Q ss_pred -ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+.. ++...+.+.++ .+++++||++|.|+.++..
T Consensus 123 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 QVST-------EEGKELAESWG------AAFLESSARENENVEEAFE 156 (180)
T ss_pred ccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 111 12223333332 4799999999999998643
No 212
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=1e-14 Score=136.54 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|+.++|||||+.+|+... . ..+....+.++.....+..++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~--~-----------------------------~~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE--F-----------------------------CLESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CCCCCCceeEEEEEEEEEECCE
Confidence 45899999999999999999984210 0 111122233344334444444
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~ 198 (476)
..+.||||||+++|.......++.+|++|+|+|.+.... |+ .....+..+.. .++| +++|.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 578999999999998877778899999999999986431 11 11222223333 3576 8899999998322
Q ss_pred C-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
. ..+ +....+.... .++++++||++|.|+.++++
T Consensus 133 ~~~~~-------~~~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 RSVAE-------EDGQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred cCCCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 111 1112222222 35899999999999998644
No 213
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=2.1e-14 Score=134.58 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=95.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 120 (476)
...++|+++|..|+|||||+.+++. |... .+....+..+.....+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~-----------------------------~~~~~tig~~~~~~~~~~~~ 59 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE-----------------------------KKYEPTIGVEVHPLDFFTNC 59 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCC-----------------------------CccCCccceeEEEEEEEECC
Confidence 5668999999999999999998742 2111 111111222222223333
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEEEEEccCCCCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~--~l~i~~iIvviNK~Dl~~~ 198 (476)
....+.||||||+++|........+.+|++|+|+|.+.... |. .....+..+. ..++| +++|.||+|+...
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~ 132 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhc
Confidence 34688999999999998777677889999999999987532 11 1111122222 13577 8899999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.... +.+ .+.+.. .++++++||++|.|+.+++
T Consensus 133 ~v~~-------~~~-~~~~~~------~~~~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 133 QVKA-------KQV-TFHRKK------NLQYYEISAKSNYNFEKPF 164 (219)
T ss_pred cCCH-------HHH-HHHHhc------CCEEEEcCCCCCCCHHHHH
Confidence 1111 111 222222 3579999999999999864
No 214
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.1e-14 Score=149.63 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=98.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
=|-...|+++|.+|||||||+++|....-.+ ....+.|+......+...
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~ 204 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAG 204 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEEC
Confidence 3556799999999999999999994321111 112456767666677778
Q ss_pred CeEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccc-cccCCCCchHHHHH-HH----------HHcC
Q 011837 122 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFE-TGFEKGGQTREHVM-LA----------KTLG 182 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e-~~~~~~~qt~e~l~-~~----------~~l~ 182 (476)
+..|+|+|+||..+ .....++.+..+|++|+|||++..... ..++......+.|. .. ...+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 88999999999532 122345556789999999999742100 00000001111221 11 1235
Q ss_pred CceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 183 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 183 i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.| +|||+||+|++.. . +..+.+...++..+ ++++++||+++.|+.++..
T Consensus 285 kP-~IVVlNKiDL~da---~----el~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 285 RP-RLVVLNKIDVPDA---R----ELAEFVRPELEARG------WPVFEVSAASREGLRELSF 333 (500)
T ss_pred CC-EEEEEECccchhh---H----HHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 66 7899999999422 1 12222333344333 4799999999999999644
No 215
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=6.5e-15 Score=130.39 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=93.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--CeE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 124 (476)
+|+++|++++|||||+++|+... .... ..+ .+-+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~------------------------~~~------~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEE------------------------YDP------TIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcC------------------------cCC------ChhHeEEEEEEECCEEEE
Confidence 58999999999999999995321 1100 000 0011112223333 467
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~ 200 (476)
+.++|+||+.+|.......+..+|++++|+|.+.... + .+....+..+.. .+.| +++++||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---F---EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 8999999999988888888899999999999876432 1 122222222222 2466 89999999984311
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. ..+.+..+.+..+ .+++++|+++|.|+.++
T Consensus 121 -~~----~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l 152 (160)
T cd00876 121 -QV----SKEEGKALAKEWG------CPFIETSAKDNINIDEV 152 (160)
T ss_pred -ee----cHHHHHHHHHHcC------CcEEEeccCCCCCHHHH
Confidence 11 1233444444432 47999999999999985
No 216
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=2.3e-14 Score=129.66 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee-eEEEEeCC--
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETET-- 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~~~-- 122 (476)
++|+++|..++|||||+.++++ |...+ + .-.|+... ...+..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~-----------------------------~--~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPS-----------------------------E--YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------C--CCCceeeeeEEEEEECCEE
Confidence 6899999999999999999853 21110 0 00111111 11233344
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|.......++.+|++|||+|.+.... |+ ...+ .+..+.. .++| +|+|.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~- 120 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDD- 120 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhC-
Confidence 678899999999998766667889999999999887531 11 2222 2222222 2566 8999999998432
Q ss_pred ccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+..+.+ .++...+.+..+ ..+++++||++|.|+.++
T Consensus 121 --~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~ 166 (175)
T cd01874 121 --PSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNV 166 (175)
T ss_pred --hhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHH
Confidence 1111111 112222333332 257999999999999986
No 217
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=1.4e-14 Score=129.28 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhc--cccEEeeeeEEEE-eCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI--KGKTVEVGRAHFE-TET 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~--~g~ti~~~~~~~~-~~~ 122 (476)
++|+++|.+++|||||+.+|+...... ..+.. .|..+......+. ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 51 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVF-----------------------------PKNYLMTTGCDFVVKEVPVDTDNT 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CccCCCceEEEEEEEEEEeCCCCE
Confidence 479999999999999999985311110 01111 1222211222222 234
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcC-
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~- 199 (476)
..+.+|||||++.|.......+..+|++++|+|.++... + ......+..+.. .++| +|+|+||+|+....
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccccccC
Confidence 779999999999998877788899999999999986431 1 111222222222 3576 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.. ....+.... ..+++++||++|.|+.++
T Consensus 125 ~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 125 VTDA-------QAQAFAQAN------QLKFFKTSALRGVGYEEP 155 (164)
T ss_pred CCHH-------HHHHHHHHc------CCeEEEEeCCCCCChHHH
Confidence 1111 111122222 347999999999999985
No 218
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.60 E-value=9.7e-15 Score=113.88 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.3
Q ss_pred eEEEEEEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeE
Q 011837 275 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 275 ~~~~v~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 352 (476)
|||+|.++|+ +.|+.++|+|++|.+++||+++++|++...+|++|+.++.++++|.|||+|+|+|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999996 35678999999999999999999999999999999999999999999999999998 4678999999
Q ss_pred Eec
Q 011837 353 LSS 355 (476)
Q Consensus 353 l~~ 355 (476)
|+.
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 984
No 219
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=1e-14 Score=131.48 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEee-eeEEEEeCC--
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETET-- 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~-~~~~~~~~~-- 122 (476)
.+|+++|..++|||||+.+++. +.... + ...|+.. ....+..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~--~~f~~-----------------------------~--~~~t~~~~~~~~~~~~~~~ 49 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFIS--HSFPD-----------------------------Y--HDPTIEDAYKQQARIDNEP 49 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCC-----------------------------C--cCCcccceEEEEEEECCEE
Confidence 6899999999999999998852 21110 0 0011111 011122333
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.||||||+.+|.......+..+|++++|+|.++... |+ ...+....+.. .++| +|+|.||+|+...
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~ 122 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhc
Confidence 568899999999998888888899999999999987532 11 22221122222 3577 8999999998421
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+ . ..++...+.+.. +++++++||++|.|+.+++
T Consensus 123 --~~--v--~~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 123 --RQ--V--TTEEGRNLAREF------NCPFFETSAALRHYIDDAF 156 (172)
T ss_pred --Cc--c--CHHHHHHHHHHh------CCEEEEEecCCCCCHHHHH
Confidence 00 1 011222333333 3579999999999999863
No 220
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=7.5e-15 Score=131.74 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|.+|+|||||+++|+. +.... ...+ ..+ +.....+..+ ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~--~~~~~------------------------~~~~---t~~---~~~~~~~~~~~~~~ 49 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ--NVFIE------------------------SYDP---TIE---DSYRKQVEIDGRQC 49 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc------------------------ccCC---cch---heEEEEEEECCEEE
Confidence 5899999999999999999842 21100 0000 000 0111122223 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH-HHHcCCceEEEEEEccCCCCcCccH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~-~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
.+.+|||||+++|.......+..+|++++|+|.+.... ++......+.+.. ....++| +++++||+|+.... .
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~--~ 123 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR--Q 123 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--c
Confidence 78899999999999888888899999999999887431 1100111111111 1123677 88899999984321 1
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ..++...+.+.++ .++++++||++|.|+.++
T Consensus 124 ~----~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 124 V----SREDGVSLSQQWG-----NVPFYETSARKRTNVDEV 155 (168)
T ss_pred c----CHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHH
Confidence 1 1112222333332 358999999999999985
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=128.72 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=104.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....+-|+++|.+|+|||||+++|....+.. .....+|.|....+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~-- 69 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVD-- 69 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEec--
Confidence 3356789999999999999999995422211 122357888887765543
Q ss_pred CeEEEEEeCCCC----------cCc---HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011837 122 TTRFTILDAPGH----------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh----------~~f---~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIv 188 (476)
+ .+.|+|.||. +.+ +...+..-..-.+++++||+.++.. ...++.+..+...++| ++|
T Consensus 70 ~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~-~~v 140 (200)
T COG0218 70 D-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP-VIV 140 (200)
T ss_pred C-cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-eEE
Confidence 3 2899999992 222 2223333345789999999999874 4578899999999999 889
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
++||||.... .........+.+. +++.+.....++..|+.++.|++++
T Consensus 141 v~tK~DKi~~----~~~~k~l~~v~~~---l~~~~~~~~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 141 VLTKADKLKK----SERNKQLNKVAEE---LKKPPPDDQWVVLFSSLKKKGIDEL 188 (200)
T ss_pred EEEccccCCh----hHHHHHHHHHHHH---hcCCCCccceEEEEecccccCHHHH
Confidence 9999999432 2222333333322 2222222223888899999998875
No 222
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.59 E-value=9e-15 Score=144.65 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=93.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|-...|+++|.+|+|||||+++|......+. .....|.......+.+.+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------------~y~fTT~~p~ig~v~~~~ 203 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLVPNLGVVRVDD 203 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------------CCCCCccCCEEEEEEeCC
Confidence 4567899999999999999999842111100 012234444444455555
Q ss_pred -eEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011837 123 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 123 -~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvv 189 (476)
..++|+|+||..+ +....++.+..+|++++|+|++.......+ .+.......+.. .+.| +++|
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~---e~l~~l~~EL~~~~~~l~~kp-~IIV 279 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI---EDYEIIRNELKKYSPELAEKP-RIVV 279 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH---HHHHHHHHHHHHhhhhhccCC-EEEE
Confidence 8899999999642 334455566789999999999864110000 011111111221 3566 7899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+||+|+... ...++..+.+ .+..+ .+++++||+++.|++++
T Consensus 280 ~NK~DL~~~----~~~~~~~~~l---~~~~~------~~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 280 LNKIDLLDE----EELAELLKEL---KKALG------KPVFPISALTGEGLDEL 320 (329)
T ss_pred EeCccCCCh----HHHHHHHHHH---HHHcC------CcEEEEEccCCcCHHHH
Confidence 999999432 2233333332 22222 46999999999999985
No 223
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.59 E-value=2.1e-14 Score=128.03 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|+.++|||||+.+++ .|... .+....+..+.....+...+ .
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFT--DNEFH-----------------------------SSHISTIGVDFKMKTIEVDGIKV 49 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHh--cCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 379999999999999999884 22111 11112222333333444444 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC-
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~- 199 (476)
.+.+|||||+.+|..........+|++++|+|.+.... |+ .....+..+... ++| +++|.||+|+....
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~ 122 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQ 122 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 68899999999998877778899999999999876421 21 111212222222 455 88999999984321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. ++...+.+.. ..+++++||++|.|+.++
T Consensus 123 v~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 123 VGD-------EQGNKLAKEY------GMDFFETSACTNSNIKES 153 (161)
T ss_pred CCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 111 2222233333 247999999999999985
No 224
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.3e-14 Score=132.65 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
++|+++|..++|||||+++|+. +... .+....++.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE--DEFS-----------------------------ESTKSTIGVDFKIKTVYIENKII 49 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCC-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999842 2111 0001112222222233333 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC-
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~- 199 (476)
.+.+|||||+++|.......+..+|++++|+|+++... |. .....+..+..+ .+| +|++.||+|+....
T Consensus 50 ~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~ 122 (188)
T cd04125 50 KLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKV 122 (188)
T ss_pred EEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCccccc
Confidence 67899999999998888888899999999999987431 11 122222223222 355 89999999984211
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+. +....+.... .++++++||++|.|+.++..
T Consensus 123 v~~-------~~~~~~~~~~------~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 123 VDS-------NIAKSFCDSL------NIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred CCH-------HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 111 1112222232 34799999999999998643
No 225
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.58 E-value=5.6e-14 Score=128.96 Aligned_cols=155 Identities=19% Similarity=0.134 Sum_probs=94.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee-EEEEeC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETE-- 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~-~~~~~~-- 121 (476)
.++|+++|..++|||||+.++++ |... ++ ...|+...+ ..+..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~--~~f~-----------------------------~~--~~~t~~~~~~~~~~~~~~ 49 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT--NAFP-----------------------------KE--YIPTVFDNYSAQTAVDGR 49 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh--CCCC-----------------------------cC--CCCceEeeeEEEEEECCE
Confidence 47999999999999999999853 2111 00 011221111 112233
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+++|....-...+.+|++|+|+|.++... |+ .... .+..+.. -++| +++|.||.|+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 122 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRND 122 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhcC
Confidence 3568899999999998877777889999999999877431 21 1111 1111111 3577 8999999999432
Q ss_pred CccHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
....+.+.+ ..++...+.+..+ ..+++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f 169 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVF 169 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHH
Confidence 100001110 0122333334332 2479999999999999963
No 226
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.58 E-value=1.7e-14 Score=126.83 Aligned_cols=147 Identities=19% Similarity=0.186 Sum_probs=94.1
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-CeEEEEE
Q 011837 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 128 (476)
Q Consensus 50 ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 128 (476)
++|++|+|||||+++|...... ......+.|.......+... ...+.|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA------------------------------IVSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc------------------------------ccCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 5899999999999998532110 01122344545444444444 6789999
Q ss_pred eCCCCcCcHH-------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 129 DAPGHKSYVP-------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 129 DtPGh~~f~~-------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
||||+.++.. .+...++.+|++++|+|+..... ......+......++| +++|+||+|+...+
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 9999877643 33446789999999999998752 1222235555667787 88999999994332
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
......+. ..... .. ....+++++|+.++.|+.++
T Consensus 121 --~~~~~~~~-~~~~~-~~---~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 121 --EEEELLEL-RLLIL-LL---LLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred --hHHHHHHH-HHhhc-cc---ccCCceEEEeeeccCCHHHH
Confidence 11111110 01111 11 13568999999999999874
No 227
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.58 E-value=3.1e-14 Score=114.54 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.9
Q ss_pred ccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 363 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
+++|+|++.||+... +.+|..||++.+|+++.++.|+|..+ + .+++|++|+.+.|+|+|++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 589999999976322 36899999999999999999998865 1 2567999999999999999999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEEEEc
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V~~v 469 (476)
++++ |||+||+.++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 9884 89999999999999999874
No 228
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=2.8e-14 Score=144.77 Aligned_cols=152 Identities=22% Similarity=0.217 Sum_probs=94.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
|-...|+++|.+|+|||||+++|......+. ...+.|.......+.+.
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~ 204 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDD 204 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeC
Confidence 3445999999999999999999943211110 12345666555556665
Q ss_pred CeEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEE
Q 011837 122 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvv 189 (476)
+..|+|+|+||... .....++.+..+|++|+|||++.......+ .+.......+.. .+.| +|||
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IVV 280 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIVV 280 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEEE
Confidence 78899999999632 234445566789999999999642100000 111122222222 3566 7899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+||+|+.. .++.+ ..+.+.++ .+++++||++|+|+.++.+
T Consensus 281 ~NK~DL~~---~~e~l-------~~l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 281 ANKMDLPE---AEENL-------EEFKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred EeCCCCcC---CHHHH-------HHHHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 99999832 12222 22222222 3689999999999999644
No 229
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=1.9e-14 Score=134.16 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=94.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|+.++|||||+++|+.. ... ......+..+.....+..++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~--~~~-----------------------------~~~~~ti~~~~~~~~i~~~~~ 53 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQ-----------------------------PVHDLTIGVEFGARMITIDNK 53 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCCccceEEEEEEEECCE
Confidence 3589999999999999999998421 110 00011122222222233333
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||++.|.......++.+|++|+|+|++.... |+ ...+.+..+.. .++| ++++.||+|+...
T Consensus 54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~~---~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 126 (210)
T PLN03108 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDLAHR 126 (210)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 468899999999998888788889999999999986421 11 11122222222 2466 8899999998431
Q ss_pred -CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..+ .++...+.+..+ ++++++||++|.|+.+++
T Consensus 127 ~~~~-------~~~~~~~~~~~~------~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 127 RAVS-------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAF 160 (210)
T ss_pred cCCC-------HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 111 123333444433 479999999999999863
No 230
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.1e-14 Score=133.84 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC---
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--- 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--- 121 (476)
..+|+++|..++|||||+++|+. +... ......+..+.....+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~--~~~~-----------------------------~~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE--GRFA-----------------------------EVSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCceeceEEEEEEEEECCCC
Confidence 37899999999999999999853 1110 0001122223333333332
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-c--CCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l--~i~~iIvviNK~Dl~~~ 198 (476)
...+.+|||||++.|.......++.+|++|+|+|.++... |+ ...+.+..+.. . ..+.++++.||+|+...
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPVFILVGHKCDLESQ 124 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCeEEEEEEccccccc
Confidence 3578999999999998877778899999999999987431 11 12222222222 2 22337889999998431
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
. + ...++...+.+..+ ++++++||++|.|+.++.+
T Consensus 125 ~--~----v~~~~~~~~~~~~~------~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 125 R--Q----VTREEAEKLAKDLG------MKYIETSARTGDNVEEAFE 159 (211)
T ss_pred c--c----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHHH
Confidence 1 1 01122233334332 5799999999999998643
No 231
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=2.9e-14 Score=146.34 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+.....+ + ....|.|.+.....+.+++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------------------v------s~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------------------V------SDIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------c------CCCCCcEEEEEEEEEEECC
Confidence 456899999999999999999995321111 1 1236788888778888899
Q ss_pred eEEEEEeCCCCcCcHH--------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~--------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.+|||||+.++.. .....+..+|++++|+|++.+.. .+.. .+..+...+.| +|+|+||+|
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 9999999999865532 23456788999999999987542 1111 33334445777 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... + . ..+.+.+ ..+++++||++ .|+.+..
T Consensus 322 l~~~--~---~-------~~~~~~~------~~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 322 LKIN--S---L-------EFFVSSK------VLNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred CCCc--c---h-------hhhhhhc------CCceEEEEEec-CCHHHHH
Confidence 9422 1 1 1112222 23688999998 4776643
No 232
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=1.5e-14 Score=130.30 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=89.6
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-CeEEEEE
Q 011837 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 128 (476)
Q Consensus 50 ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~~~~~li 128 (476)
++|++|+|||||+++|....- ......+.|++.....+..+ +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-------------------------------KVANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-------------------------------cccCCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999842110 01112345555555556667 8899999
Q ss_pred eCCCCcC-------cHHHHhhhccccCEEEEEEECCCCcc---ccccCCCCchHHHHHHHH----------HcCCceEEE
Q 011837 129 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEF---ETGFEKGGQTREHVMLAK----------TLGVTKLLL 188 (476)
Q Consensus 129 DtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~---e~~~~~~~qt~e~l~~~~----------~l~i~~iIv 188 (476)
||||+.+ +...+...+..+|++++|+|+..... ...+ .+...+...+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 9999733 23344566778999999999987520 0000 11122222222 13677 889
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+.... ...... ....... ...+++++||++|.|+.++
T Consensus 126 v~NK~Dl~~~~----~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 126 VLNKIDLDDAE----ELEEEL--VRELALE------EGAEVVPISAKTEEGLDEL 168 (176)
T ss_pred EEEchhcCchh----HHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHH
Confidence 99999994321 111111 1111111 2457999999999999885
No 233
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=3.8e-14 Score=129.87 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEee-eeEEEEeCCeE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETETTR 124 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~-~~~~~~~~~~~ 124 (476)
++|+++|..++|||||+.+|+. |.... +....+.... ...........
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQ-----------------------------VYEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------ccCCcceeeeEEEEEECCEEEE
Confidence 4799999999999999999842 21110 0000011111 01111222357
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCcCcc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~--l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+.||||||+++|.......+..+|++++|+|.+.... |+ ... ..+..+.. .++| +|+|.||+|+......
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE---NVESKWLGEIREHCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhh
Confidence 8999999999987666666789999999999887431 11 111 12222322 2566 8999999999432100
Q ss_pred HHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+.... ..++...+.+..+ .++++++||++|.|+.+++
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f 166 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAF 166 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHH
Confidence 000000 0112223333332 3579999999999999963
No 234
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=143.21 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=106.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
..-++++++|.||+|||||+|+|+...-+| ++| ..|.|.|+-...+..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------------------VTd------I~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAI------------------------VTD------IAGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceE------------------------ecC------CCCCccceEEEEEEECC
Confidence 345899999999999999999997544333 333 57899999999999999
Q ss_pred eEEEEEeCCCCc---CcH-----HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHK---SYV-----PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~---~f~-----~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
+.+.++||+|-+ +.+ ......+..||.+++|+|++++.. .+....+. +...+.| +++|+||+|
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v~NK~D 335 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVVLNKAD 335 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEEEechh
Confidence 999999999944 332 223445779999999999998642 23334433 3344566 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+..... ...+ +. ....+++++|+++|+|++.+.+
T Consensus 336 L~~~~~--------~~~~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 336 LVSKIE--------LESE-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred cccccc--------cchh-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 954321 0111 00 1234799999999999998543
No 235
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.56 E-value=1.4e-14 Score=130.71 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
++++++|+.++|||||+.+++. +... .. ......+.....+..+ ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~--~~~~------------------------~~------~~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT--NGYP------------------------TE------YVPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCC------------------------CC------CCCceeeeeeEEEEECCEEE
Confidence 4789999999999999988743 1110 00 0011111111222233 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcCcc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.+.||||||+.+|.......++.+|++|+|+|.++... |+ ......+..+.. .++| ++++.||+|+....-.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 122 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNV 122 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhH
Confidence 78899999999998777677889999999999987531 11 111111222222 2566 8999999998421100
Q ss_pred -------HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 -------KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 -------~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.++ .-..++...+.+..+. .+++++||++|.|+.++.
T Consensus 123 ~~~~~~~~~~-~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf 166 (173)
T cd04130 123 LIQLARYGEK-PVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVF 166 (173)
T ss_pred HHHHhhcCCC-CcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHH
Confidence 000 0011223334444332 379999999999999853
No 236
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=1.4e-14 Score=129.55 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=86.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|++++|||||+.+++. +.... +..+... +.......+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~------------------------~~~~t~~----~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIG------------------------EYDPNLE----SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Ccccc------------------------ccCCChH----HhceEEEEECCEEEEEE
Confidence 489999999999999999852 11100 0000000 00111111222234688
Q ss_pred EEeCCCCcCc-HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEccCCCCcC-
Q 011837 127 ILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTVN- 199 (476)
Q Consensus 127 liDtPGh~~f-~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~Dl~~~~- 199 (476)
||||||+..+ ...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 123 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ 123 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCc
Confidence 9999999863 4455667889999999999987531 11 12222222222 2577 88999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc-ccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~ 243 (476)
.+ .++...+.+..+ .+++++||++|. |+.++
T Consensus 124 v~-------~~~~~~~~~~~~------~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 124 VS-------TEEGEKLASELG------CLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred cC-------HHHHHHHHHHcC------CEEEEeCCCCCchhHHHH
Confidence 11 122223333332 479999999994 89886
No 237
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.56 E-value=1e-13 Score=126.05 Aligned_cols=156 Identities=16% Similarity=0.137 Sum_probs=96.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee-eEEEEe
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~ 120 (476)
.+..++|+++|..++|||||+.+++. |.... + ...|+... ...+..
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~--~~f~~-----------------------------~--~~pT~~~~~~~~~~~ 48 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAK--DCFPE-----------------------------N--YVPTVFENYTASFEI 48 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------c--cCCceeeeeEEEEEE
Confidence 34568999999999999999999853 21110 0 01111111 112233
Q ss_pred C--CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCC
Q 011837 121 E--TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~--~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl 195 (476)
+ ...+.||||+|+++|.......++.+|++|||+|.+.... |+ .. ...+..++. -+.| +|+|.||+|+
T Consensus 49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL 121 (182)
T cd04172 49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDL 121 (182)
T ss_pred CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhh
Confidence 3 3568999999999998877777899999999999876421 11 11 111112222 2466 8899999998
Q ss_pred CCcCccHHHH--------HHHHHHHHHHHHhccCCcCCCeeEEeeecccccc-ccccc
Q 011837 196 HTVNWSKERY--------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~-i~~~~ 244 (476)
... ..... .-..++...+.++.+. .+++.+||++|.| +.+++
T Consensus 122 ~~~--~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 122 RTD--LTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIF 172 (182)
T ss_pred hcC--hhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHH
Confidence 321 00000 0112344455555542 3799999999998 99863
No 238
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=3.9e-14 Score=150.48 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=97.1
Q ss_pred ecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEEEeCC
Q 011837 52 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 131 (476)
Q Consensus 52 G~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~liDtP 131 (476)
|.+|+|||||+++|.... ......+|+|++.....+++++..++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~-------------------------------~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-------------------------------QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-------------------------------CeecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 889999999999994210 0112257899998888888888999999999
Q ss_pred CCcCcHHH-----Hhh---hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 132 GHKSYVPN-----MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 132 Gh~~f~~~-----~~~---~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
|+.+|... +.+ ....+|++++|+|++... ...+....+...++| +++|+||+|+....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---------r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---------RNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---------hhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 99887532 111 224789999999998732 333444455667888 88999999983221
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... .+.+.+.+.+ +++++++||++|.|++++.+
T Consensus 116 ~i~---~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GIR---IDEEKLEERL------GVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CCh---hhHHHHHHHc------CCCEEEEECCCCCCHHHHHH
Confidence 111 1222333333 35799999999999998643
No 239
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.6e-14 Score=124.18 Aligned_cols=155 Identities=20% Similarity=0.159 Sum_probs=110.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
-..+|.++|..|+|||-|+-|+ ..+ ...+....-+-+|.....++.++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf--~~~-----------------------------~f~e~~~sTIGVDf~~rt~e~~gk 56 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRF--KDD-----------------------------TFTESYISTIGVDFKIRTVELDGK 56 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhh--ccC-----------------------------CcchhhcceeeeEEEEEEeeecce
Confidence 4579999999999999999887 222 23333445566677777777766
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.++.+|||.|+++|...+.+..+.|+++|+|.|.+.-. .|+..+++.+-+..-..-++| .++|.||+|+... .
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~--~ 130 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK--R 130 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--e
Confidence 45899999999999999999999999999999998743 355445555555544455777 6789999999322 1
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. -.-++.+.+....+.. +++++||+.+.|+++.+
T Consensus 131 ~----v~~~~a~~fa~~~~~~-----~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 131 V----VSTEEAQEFADELGIP-----IFLETSAKDSTNVEDAF 164 (205)
T ss_pred e----cCHHHHHHHHHhcCCc-----ceeecccCCccCHHHHH
Confidence 1 1112334445444432 39999999999999853
No 240
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=3.5e-14 Score=144.94 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=91.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..+.|+++|.+|+|||||+++|+...- ......+.|++.....+.+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~-------------------------------~v~~~~~tTld~~~~~i~l~~~ 244 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARV-------------------------------YAADQLFATLDPTLRRIDVADV 244 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCce-------------------------------eeccCCCCCcCCceEEEEeCCC
Confidence 346899999999999999999942110 001123456666555666655
Q ss_pred eEEEEEeCCCCcCc--------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f--------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.|+||||..+. ...+...+..||++|+|+|+++..+.... ..+.+.+..+...++| +|+|+||+|
T Consensus 245 ~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l---~~v~~iL~el~~~~~p-vIiV~NKiD 320 (426)
T PRK11058 245 GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI---EAVNTVLEEIDAHEIP-TLLVMNKID 320 (426)
T ss_pred CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH---HHHHHHHHHhccCCCC-EEEEEEccc
Confidence 38899999997432 22234556889999999999875421000 0011223333333577 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... ....+ .. ...++. .++++||++|.|++++.
T Consensus 321 L~~~--~~~~~-------~~--~~~~~~-----~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 321 MLDD--FEPRI-------DR--DEENKP-----IRVWLSAQTGAGIPLLF 354 (426)
T ss_pred CCCc--hhHHH-------HH--HhcCCC-----ceEEEeCCCCCCHHHHH
Confidence 9421 11111 10 111211 25899999999999853
No 241
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.55 E-value=8.2e-14 Score=125.66 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=90.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEee-eeEEEEeC--C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETE--T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~-~~~~~~~~--~ 122 (476)
.+|+++|+.++|||||+.+|+. +.... +.. .|+.. ....+..+ .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~--~~~~~-----------------------------~~~--~t~~~~~~~~~~~~~~~ 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK--DQFPE-----------------------------VYV--PTVFENYVADIEVDGKQ 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCC--CccccceEEEEEECCEE
Confidence 5899999999999999999853 11100 000 01100 01122233 3
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH-HHHHH--cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~--l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.+|||||+++|.......+..+|++++|+|.+.... |+ ...+.+ ..++. .++| +++|+||+|+...+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (175)
T cd01870 49 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDE 121 (175)
T ss_pred EEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccCh
Confidence 468899999999988766667789999999999875321 11 111111 12222 2677 89999999985322
Q ss_pred ccHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
...+.... ...+...+.+..+ ..+++++||++|.|+.++
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l 166 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREV 166 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHH
Confidence 11111100 0122233333332 247999999999999985
No 242
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.55 E-value=4e-14 Score=112.47 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=73.5
Q ss_pred cccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEE-cceEEe
Q 011837 362 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICT 440 (476)
Q Consensus 362 ~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~-~~pi~~ 440 (476)
+++.|+|++.|++. ++++.+||++++|+++.+++|+|..+.+ +++++||.+.|+|+| .+|+++
T Consensus 2 ~~~~f~A~i~il~~--~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~ 65 (87)
T cd03708 2 ACWEFEAEILVLHH--PTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYL 65 (87)
T ss_pred ceeEEEEEEEEEcC--CCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEE
Confidence 46899999999542 3789999999999999999999987642 569999999999995 899988
Q ss_pred ecccCccccceEEEEeCCcEEEEEEEEEc
Q 011837 441 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 469 (476)
Q Consensus 441 e~~~~~~~lgrfilr~~~~tva~G~V~~v 469 (476)
|+ +|||+||+ |+|+|+|+|+++
T Consensus 66 e~------~grf~lr~-g~tva~G~I~~~ 87 (87)
T cd03708 66 RE------GQRLIFRE-GRTKGVGEVTKV 87 (87)
T ss_pred cc------CCeEEEEC-CCcEEEEEEEEC
Confidence 87 69999965 599999999875
No 243
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.54 E-value=2.7e-14 Score=129.11 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee-eEEEEeC--C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE--T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~~--~ 122 (476)
++|+++|+.++|||+|+.+++. |.... + ...|+... ...+..+ .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~-----------------------------~--~~~Ti~~~~~~~~~~~~~~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPT-----------------------------D--YIPTVFDNFSANVSVDGNT 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCC-----------------------------C--CCCcceeeeEEEEEECCEE
Confidence 6899999999999999999842 21110 0 01111111 1122233 3
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl~~~~ 199 (476)
.++.||||+|+++|.......++.+|++|||+|.+.... |+ .. +..+..++. -++| +|+|.||+|+....
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccCh
Confidence 678999999999998887778899999999999986431 21 11 122222332 2566 89999999993210
Q ss_pred ccH-H---HHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSK-E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~-~---~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... . ...-..++...+.+..+. .+++.+||++|.|+++++
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 165 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHH
Confidence 000 0 000112333444444332 269999999999999863
No 244
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=4e-14 Score=132.36 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=107.0
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
++......+.++|+++|.+|+|||||.|.++...=. ...++...|.....
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~------------------------------~vS~K~~TTr~~il 112 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVS------------------------------AVSRKVHTTRHRIL 112 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccc------------------------------cccccccceeeeee
Confidence 333345677899999999999999999999642211 11223345666666
Q ss_pred EEEEeCCeEEEEEeCCC------CcC------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC
Q 011837 116 AHFETETTRFTILDAPG------HKS------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG 182 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPG------h~~------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~ 182 (476)
..+..+..++.|+|||| |.. +..+...++..||.+++|+|+...-. ...-..+..+.. ..
T Consensus 113 gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~vl~~l~~ys~ 185 (379)
T KOG1423|consen 113 GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPRVLHMLEEYSK 185 (379)
T ss_pred EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChHHHHHHHHHhc
Confidence 67778889999999999 222 23344567789999999999985211 111122223333 46
Q ss_pred CceEEEEEEccCCCCcCccHHHHHHH------------HHHHHHHHHhc----------cCCcCCCeeEEeeeccccccc
Q 011837 183 VTKLLLVVNKMDDHTVNWSKERYDEI------------ESKMTPFLKAS----------GYNVKKDVQFLPISGLMGLNM 240 (476)
Q Consensus 183 i~~iIvviNK~Dl~~~~~~~~~~~~~------------~~~l~~~l~~~----------~~~~~~~~~~ipvSa~~g~~i 240 (476)
+| -|+|+||+|.... ...+-.. +-++++-+... ||. ..-.+|++||++|.|+
T Consensus 186 ip-s~lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws--hfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 186 IP-SILVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWS--HFERVFMVSALYGEGI 259 (379)
T ss_pred CC-ceeeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcc--cceeEEEEecccccCH
Confidence 77 5689999997421 1111111 11222222111 111 1226999999999999
Q ss_pred ccccc-----cCCCCCCC
Q 011837 241 KTRVD-----KSLCPWWN 253 (476)
Q Consensus 241 ~~~~~-----~~~~~w~~ 253 (476)
+++.+ ...-||+-
T Consensus 260 kdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 260 KDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred HHHHHHHHhcCCCCCCCC
Confidence 98643 33457874
No 245
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=1.3e-13 Score=127.21 Aligned_cols=143 Identities=18% Similarity=0.225 Sum_probs=90.8
Q ss_pred EecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCeEEEEE
Q 011837 51 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTRFTIL 128 (476)
Q Consensus 51 vG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~~~li 128 (476)
+|..++|||||+.++++ |.. ..+....+.++.....+.. ....+.||
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f-----------------------------~~~~~~Tig~~~~~~~~~~~~~~~~l~iw 49 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEF-----------------------------EKKYVATLGVEVHPLVFHTNRGPIRFNVW 49 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCC-----------------------------CCCCCCceeEEEEEEEEEECCEEEEEEEE
Confidence 69999999999999852 211 1111111222332333333 34678999
Q ss_pred eCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcCccHHHHH
Q 011837 129 DAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERYD 206 (476)
Q Consensus 129 DtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~~~~~~~~ 206 (476)
||||+++|.......++.+|++|+|+|++.... |+ ..+.-+..+.. .++| +|+|.||+|+.......
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~---- 118 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA---- 118 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH----
Confidence 999999998888888899999999999988542 11 11122222222 3677 88999999984321111
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+.+ .+.+.. .++++++||++|.|+.+++.
T Consensus 119 ---~~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 119 ---KSI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred ---HHH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 111 222222 45799999999999998643
No 246
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=2e-13 Score=121.56 Aligned_cols=148 Identities=21% Similarity=0.266 Sum_probs=93.5
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEEE
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 127 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~l 127 (476)
|+++|+.|+|||||++.|+.... .. ..+...+.|...... ..+ ..+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~--~~~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LA----------------------------RTSKTPGKTQLINFF--NVN-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-ee----------------------------eecCCCCcceeEEEE--Ecc-CeEEE
Confidence 79999999999999999852111 00 001122333333222 222 38999
Q ss_pred EeCCCCcCc----------HHHH---hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 128 LDAPGHKSY----------VPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 128 iDtPGh~~f----------~~~~---~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
+||||+... ...+ +......+++++++|...... ....+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997543 2222 233345788999999987642 3445566777777887 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.. .+........+...++... ...+++|+|++++.|+.++
T Consensus 122 ~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 122 KLK----KSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred cCC----hHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHH
Confidence 843 2333344445555554211 2458999999999999884
No 247
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.53 E-value=9.1e-14 Score=111.10 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=74.8
Q ss_pred ccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 363 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 363 ~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
++.|+|++.+++... +.+|+.||++.+|+++.++.|+|..+. +|++|++|+.+.|+|++++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 588999999976432 368999999999999999999988653 4667999999999999999999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEE
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKV 466 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V 466 (476)
++++ |||+||+.++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 9884 99999999999999986
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.52 E-value=1.6e-13 Score=127.09 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=80.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE--eCCe
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~--~~~~ 123 (476)
++|+++|++|+|||||+.+|... ... .. ...++.+.....+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~--~~~-------------------------~t-----~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG--KYR-------------------------ST-----VTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Cc-----cCcEeecceEEEeecCCCCc
Confidence 47899999999999999998431 100 00 00011111111111 2367
Q ss_pred EEEEEeCCCCcCcHHHHhhhcccc-CEEEEEEECCCCccccccCCCCchHHHHHHH----HH--cCCceEEEEEEccCCC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~a-D~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~--l~i~~iIvviNK~Dl~ 196 (476)
.+.+||+|||.+|.......++.+ +++|+|+|+....- .+ ..+.+.+..+ .. .++| +++++||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999988888888888 99999999987520 00 1233333222 11 3677 89999999996
Q ss_pred CcCccHHHHHHHHHHHHHH
Q 011837 197 TVNWSKERYDEIESKMTPF 215 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~ 215 (476)
.+...+...+.+.+++..+
T Consensus 123 ~a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 123 TAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5432222233333444443
No 249
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.52 E-value=5.1e-13 Score=125.64 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=96.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+++|..++|||+|+.+++. +.... +....+..+. ...+..+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~-----------------------------~y~pTi~~~~-~~~i~~~~ 58 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK--DCYPE-----------------------------TYVPTVFENY-TAGLETEE 58 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc--CCCCC-----------------------------CcCCceeeee-EEEEEECC
Confidence 4568999999999999999998842 21110 0000011111 1112233
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCCCC
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl~~ 197 (476)
...+.||||+|+++|.......++.+|++|||+|.+.... |+ .. ...+..+.. -++| +|+|.||+|+..
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD---SALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 3568999999999998877778899999999999986431 11 11 111122222 2566 889999999842
Q ss_pred cCccH------H-HHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc-ccccccc
Q 011837 198 VNWSK------E-RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 245 (476)
Q Consensus 198 ~~~~~------~-~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~~~ 245 (476)
. ... . ...-..++...+.+..++. +++.+||++|. |+.+++.
T Consensus 132 ~-~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~-----~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 132 D-LSTLMELSNQKQAPISYEQGCALAKQLGAE-----VYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred c-cchhhhhccccCCcCCHHHHHHHHHHcCCC-----EEEEccCCcCCcCHHHHHH
Confidence 1 000 0 0001123455556665432 68999999998 7998644
No 250
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=3.3e-13 Score=139.27 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=76.7
Q ss_pred CeEEEEEeCCCCcC-----cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEEccC
Q 011837 122 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 194 (476)
Q Consensus 122 ~~~~~liDtPGh~~-----f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~--i~~iIvviNK~D 194 (476)
..++.|+||||-.. +.+.|...+..+|++++|||+..+.. ...++.+..++..+ .| +|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s-------~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS-------ISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC-------hhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 37899999999422 45567788999999999999988642 34556666677766 46 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+... .....+.+.+.+...+...++. ...++|+||++|.|+..+
T Consensus 301 l~dr--eeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~L 344 (741)
T PRK09866 301 QQDR--NSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRA 344 (741)
T ss_pred CCCc--ccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHH
Confidence 8321 2222444555555444433332 347999999999999884
No 251
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.51 E-value=2.3e-13 Score=128.59 Aligned_cols=82 Identities=24% Similarity=0.273 Sum_probs=59.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+++|||||+++|..... ......+.|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-------------------------------~v~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-------------------------------EVAAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCCCccccceEEEEEECCeEEE
Confidence 689999999999999999842110 0001233455555555667889999
Q ss_pred EEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCC
Q 011837 127 ILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 127 liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g 159 (476)
++||||+.+ +...++..++.+|++++|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 334566788999999999998754
No 252
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=6.2e-13 Score=120.55 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=92.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--Ce
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~ 123 (476)
.+|+++|..++|||||+.+++. +... .+....+..+. ...+..+ ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~-----------------------------~~~~~t~~~~~-~~~~~~~~~~~ 49 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYP-----------------------------ETYVPTVFENY-TASFEIDEQRI 49 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCC-----------------------------CCcCCceEEEE-EEEEEECCEEE
Confidence 5899999999999999999842 2110 00001111111 1123333 35
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.||||||++.|.......++.+|++|+|+|.+.... |+ .. ...+..++. -++| +|+|.||+|+...
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~-- 120 (178)
T cd04131 50 ELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD-- 120 (178)
T ss_pred EEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC--
Confidence 68899999999997776677889999999999976431 21 11 122222222 2465 8899999998321
Q ss_pred cHH--HH------HHHHHHHHHHHHhccCCcCCCeeEEeeecccccc-cccc
Q 011837 201 SKE--RY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTR 243 (476)
Q Consensus 201 ~~~--~~------~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~-i~~~ 243 (476)
... .+ .-..++..++.+..+. .+++.+||++|.| +.++
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~ 167 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDI 167 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHH
Confidence 000 00 0012234445555442 2799999999995 9886
No 253
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.2e-13 Score=117.71 Aligned_cols=153 Identities=19% Similarity=0.261 Sum_probs=102.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+..+|+++|..++|||+|+.++.|.. .++ .-..-|-+|.-...+...
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~--fd~-----------------------------~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDK--FDN-----------------------------TYQATIGIDFLSKTMYLE 67 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhh--hcc-----------------------------cccceeeeEEEEEEEEEc
Confidence 3445899999999999999999997632 110 011223444444445555
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCC-ccccccCCCCchHHHHHHHHH-cCC--ceEEEEEEccCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-LGV--TKLLLVVNKMDD 195 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g-~~e~~~~~~~qt~e~l~~~~~-l~i--~~iIvviNK~Dl 195 (476)
+ .++.||||+|+++|....-++++.+.+||+|.|.++- .|| +|..-+.-++. .|- .-+++|.||-||
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe-------~t~kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFE-------NTSKWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHH-------HHHHHHHHHHhccCCCceEEEEEcccccc
Confidence 4 6688999999999999999999999999999997763 331 44444444443 332 236789999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+ +..+.. ++=....+++ ++.|+.+||+.|.|+.+++
T Consensus 141 ~d----krqvs~--eEg~~kAkel------~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 141 SD----KRQVSI--EEGERKAKEL------NAEFIETSAKAGENVKQLF 177 (221)
T ss_pred cc----hhhhhH--HHHHHHHHHh------CcEEEEecccCCCCHHHHH
Confidence 43 222211 1112333443 3579999999999999863
No 254
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.5e-13 Score=142.51 Aligned_cols=145 Identities=21% Similarity=0.256 Sum_probs=101.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|++|+|||||+|+|....- .-..-.|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-------------------------------~VgNwpGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-------------------------------KVGNWPGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-------------------------------eecCCCCeeEEEEEEEEEecCce
Confidence 35699999999999999999932111 12235899999999999999999
Q ss_pred EEEEeCCCCcCcHHH------Hhhh-c-cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 125 FTILDAPGHKSYVPN------MISG-A-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~f~~~------~~~~-~-~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
+.++|.||--.+... .... + ..+|++|-|+||+.-. .......++.++|+| +|+++|++|.+
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---------RnLyltlQLlE~g~p-~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---------RNLYLTLQLLELGIP-MILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---------HHHHHHHHHHHcCCC-eEEEeccHhhH
Confidence 999999994433111 1111 1 4689999999997531 223333456678999 99999999983
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. . -+.-+..++-+.+ .+|++|+||++|.|++++
T Consensus 122 ~~----~---Gi~ID~~~L~~~L------GvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 122 KK----R---GIRIDIEKLSKLL------GVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred Hh----c---CCcccHHHHHHHh------CCCEEEEEeecCCCHHHH
Confidence 21 1 1112222223333 468999999999999885
No 255
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.49 E-value=5.3e-13 Score=113.68 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=106.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|.++|..||||||++.+|+... ... -.-|.-......+.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~------------------------------~~~----i~pt~gf~Iktl~~~~ 59 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED------------------------------TDT----ISPTLGFQIKTLEYKG 59 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC------------------------------ccc----cCCccceeeEEEEecc
Confidence 347999999999999999999985211 000 1123333445577889
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~l~i~~iIvviNK~Dl~~~ 198 (476)
+.++++|..|+..+..-+-.+....|+.|+|||..+..- ..++..++..+ +..|.| ++|+.||.|++++
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r------~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR------MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH------HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 999999999999999999999999999999999876431 01233333222 224666 8899999999633
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.+.+..+ -.+..++++. .++++-+||.+|+++.+-
T Consensus 133 -l~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 133 -LSLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred -cCHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHHH
Confidence 333333322 3455555543 568999999999998763
No 256
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.49 E-value=4.1e-13 Score=125.59 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|..++|||+|+.+|+. +... ++....+..+. ...+..++ .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~-----------------------------~~y~pTi~~~~-~~~~~~~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYP-----------------------------GSYVPTVFENY-TASFEIDKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CccCCccccce-EEEEEECCEEE
Confidence 6899999999999999999842 2111 00011111011 12233333 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHH--cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~--l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.||||+|++.|.......+..+|++|+|+|.++... |+ ...+.+. .... -++| +|+|.||+|+...
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~-- 120 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTD-- 120 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccc--
Confidence 68889999999998877778899999999999887421 11 1111111 1121 3566 8999999998321
Q ss_pred cHHHHHH---------HHHHHHHHHHhccCCcCCCeeEEeeecccccc-ccccc
Q 011837 201 SKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 244 (476)
Q Consensus 201 ~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~-i~~~~ 244 (476)
.....+ ..++...+.+.+|. ++++.+||+++.| +.+++
T Consensus 121 -~~~~~~~~~~~~~pIs~e~g~~~ak~~~~-----~~y~E~SAk~~~~~V~~~F 168 (222)
T cd04173 121 -LATLRELSKQRLIPVTHEQGTVLAKQVGA-----VSYVECSSRSSERSVRDVF 168 (222)
T ss_pred -hhhhhhhhhccCCccCHHHHHHHHHHcCC-----CEEEEcCCCcCCcCHHHHH
Confidence 111111 11233344444432 3799999999985 98864
No 257
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.49 E-value=3.1e-13 Score=126.86 Aligned_cols=150 Identities=21% Similarity=0.227 Sum_probs=87.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|..|+|||||+++|+ .|.... . ..+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~--~~~~~~------------------------~--~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT--SGEYDD------------------------H--AYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh--cCCcCc------------------------c--CcCCCccccceEEEEEECCEEEEE
Confidence 379999999999999999984 221110 0 000000001111112222245678
Q ss_pred EEEeCCCCcCcHHHHhhhcc-ccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCc
Q 011837 126 TILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~-~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~ 200 (476)
.||||||++.+... ..+. .+|++++|+|+++... |+ ...+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~- 122 (221)
T cd04148 53 VVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR- 122 (221)
T ss_pred EEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc-
Confidence 99999999854433 2345 8999999999987531 11 22333333333 3577 89999999984321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+-. .++...+.... +.+++++||++|.|+.++.
T Consensus 123 -~v~----~~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 123 -EVS----VQEGRACAVVF------DCKFIETSAGLQHNVDELL 155 (221)
T ss_pred -eec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHH
Confidence 100 11122222332 3479999999999999864
No 258
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.6e-13 Score=121.29 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=103.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
-....+|.++|.+++|||.++-++.. +... .. ...-+-|+......+.+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d--~~f~------------------------~~-----~~sTiGIDFk~kti~l~ 57 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSD--DSFN------------------------TS-----FISTIGIDFKIKTIELD 57 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhh--ccCc------------------------CC-----ccceEEEEEEEEEEEeC
Confidence 34568999999999999999988731 1111 00 11224455555556666
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+ ..+.+|||.|+++|...+-++++.|++++||+|.+.... |+....+.+.+..-..-+++ .++|.||+|+...
T Consensus 58 g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~S---feni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~- 132 (207)
T KOG0078|consen 58 GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKS---FENIRNWIKNIDEHASDDVV-KILVGNKCDLEEK- 132 (207)
T ss_pred CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHH---HHHHHHHHHHHHhhCCCCCc-EEEeecccccccc-
Confidence 5 457889999999999999999999999999999876421 22111223333333334787 7789999998321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
-.--.+.-+.+..++| ++|+.+||++|.|+.+.
T Consensus 133 -----R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 133 -----RQVSKERGEALAREYG------IKFFETSAKTNFNIEEA 165 (207)
T ss_pred -----ccccHHHHHHHHHHhC------CeEEEccccCCCCHHHH
Confidence 1112233444555554 57999999999999985
No 259
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=3.3e-13 Score=117.12 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=90.3
Q ss_pred EEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccE-EeeeeEEEEe--CCeEEE
Q 011837 50 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT-VEVGRAHFET--ETTRFT 126 (476)
Q Consensus 50 ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t-i~~~~~~~~~--~~~~~~ 126 (476)
++|++++|||||+++|...... . .....| .+.....+.. .+..+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~------------------------------~--~~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV------------------------------P--EEYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC------------------------------C--cccccchhheeeEEEEECCEEEEEE
Confidence 5899999999999999532210 0 011111 1222222222 357899
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-----HHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-----~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++|+||+.++.......+..+|++++|+|+..+... +... .+......++| +++++||+|+....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~-- 118 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEER-- 118 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEecccccccc--
Confidence 999999999988888888999999999999986421 1111 22233345676 89999999995432
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
...... ........ ...+++++|+.++.|+.++
T Consensus 119 ~~~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 119 VVSEEE----LAEQLAKE-----LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred chHHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHH
Confidence 111111 11111111 2468999999999999874
No 260
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=4.2e-13 Score=119.32 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--CeE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~~~ 124 (476)
+|+++|+.++|||||+.+|.. +... .+...-+..+.....+..+ ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 49 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFP-----------------------------ENYIPTIGIDSYSKEVSIDGKPVN 49 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTT-----------------------------SSSETTSSEEEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccc-----------------------------cccccccccccccccccccccccc
Confidence 689999999999999999842 2111 0001111123333333333 356
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC-CceEEEEEEccCCCCcCccH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG-VTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~-i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.|||++|+++|.......+..+|++|+|.|.+... .|+ .....+..+.. .. -++++|+.||.|+... .+
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~---S~~---~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~--~~ 121 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE---SFE---NLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE--RE 121 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH---HHH---THHHHHHHHHHHSTTTSEEEEEEETTTGGGG--SS
T ss_pred cccccccccccccccccccccccccccccccccccc---ccc---ccccccccccccccccccceeeecccccccc--cc
Confidence 899999999999877767788999999999988742 122 22222222222 22 2348999999998431 11
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
-. .++...+.+..+ .+++.+|++++.|+.++
T Consensus 122 v~----~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 122 VS----VEEAQEFAKELG------VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp SC----HHHHHHHHHHTT------SEEEEEBTTTTTTHHHH
T ss_pred ch----hhHHHHHHHHhC------CEEEEEECCCCCCHHHH
Confidence 11 123444555543 58999999999999986
No 261
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.5e-13 Score=118.08 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=105.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..++.++|..|+|||.|+-++.. .... .. ...-+-++.+...+..++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~--krF~------------------------~~-----hd~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTD--KRFQ------------------------PV-----HDLTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhc--cCcc------------------------cc-----ccceeeeeeceeEEEEcCce
Confidence 46889999999999999977621 1110 01 012244555666666665
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
.++++|||.||+.|..-+-+..+.|-+||||.|.+.... |+ ....+|.-++.. +.. ++++.||+||...
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~r- 126 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENMV-IMLIGNKSDLEAR- 126 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCcE-EEEEcchhhhhcc-
Confidence 457899999999999999999999999999999887532 33 222233333433 454 7789999999322
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
-+-..++-+.+.++.|+ .++.+||++++|+++.+.
T Consensus 127 -----R~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 127 -----REVSKEEGEAFAREHGL------IFMETSAKTAENVEEAFI 161 (216)
T ss_pred -----ccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHHH
Confidence 23345667777777664 688999999999999643
No 262
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.45 E-value=3.7e-13 Score=116.82 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=102.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEe--eeeEEEE
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE--VGRAHFE 119 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~--~~~~~~~ 119 (476)
++..++|.++|.+|+|||+|++++.+.. +. .....||- .-...+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~k----------F~-----------------------~qykaTIgadFltKev~ 52 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKK----------FS-----------------------QQYKATIGADFLTKEVQ 52 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHH----------HH-----------------------HHhccccchhheeeEEE
Confidence 4567999999999999999999986421 10 11112332 2223334
Q ss_pred eCCe--EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc------CCceEEEEEE
Q 011837 120 TETT--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVN 191 (476)
Q Consensus 120 ~~~~--~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l------~i~~iIvviN 191 (476)
.+++ .+.+|||+|+++|...-..-.+.||.++||.|.+.... |+....++.. ++... ..| |||+.|
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe~L~~Wr~E--Fl~qa~~~~Pe~FP-FVilGN 126 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FENLENWRKE--FLIQASPQDPETFP-FVILGN 126 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hccHHHHHHH--HHHhcCCCCCCccc-EEEEcc
Confidence 4444 46789999999999888777899999999999876432 3222233332 33322 355 999999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+|+..- +.+ ....+..+.+.++- .++|++.+||+.+.|+.+.
T Consensus 127 KiD~~~~---~~r-~VS~~~Aq~WC~s~-----gnipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 127 KIDVDGG---KSR-QVSEKKAQTWCKSK-----GNIPYFETSAKEATNVDEA 169 (210)
T ss_pred cccCCCC---ccc-eeeHHHHHHHHHhc-----CCceeEEecccccccHHHH
Confidence 9998431 111 12234455666664 4789999999999999885
No 263
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=4.5e-12 Score=118.54 Aligned_cols=150 Identities=16% Similarity=0.221 Sum_probs=92.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE--E
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--E 119 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~--~ 119 (476)
....++|+++|+.|+|||||+.+++. |.... +....+..+.....+ .
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 54 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLT--GEFEK-----------------------------KYIPTLGVEVHPLKFYTN 54 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCccceEEEEEEEEEC
Confidence 44558999999999999999987742 22111 001111222222223 2
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-H-cCCceEEEEEEccCCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T-LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~-l~i~~iIvviNK~Dl~~ 197 (476)
.....+.++||||+++|..........+|++++|+|.+.... |. ..+..+..+. . .++| ++++.||+|+..
T Consensus 55 ~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~ 127 (215)
T PTZ00132 55 CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVDVKD 127 (215)
T ss_pred CeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccCcc
Confidence 244678999999999997776666788999999999987542 11 1111111111 1 3566 788999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..... + ...+.+.. ...++++||++|.|+.+.
T Consensus 128 ~~~~~----~----~~~~~~~~------~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 128 RQVKA----R----QITFHRKK------NLQYYDISAKSNYNFEKP 159 (215)
T ss_pred ccCCH----H----HHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 21111 1 11223332 347899999999999874
No 264
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.43 E-value=9.3e-13 Score=120.41 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
.+|+++|+.++|||||+++|.. |.... +....+.... ...+..++ .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE-----------------------------EYHPTVFENY-VTDCRVDGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc-----------------------------ccCCcccceE-EEEEEECCEEE
Confidence 5899999999999999999842 21110 0000000000 11122232 4
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~--l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.++|+||++.|.......++.+|+++++.|.+.... |+ ... ..+..+.. -.+| +|+|.||+|+...+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcc
Confidence 57899999998886544445688999999999876421 11 111 12222222 2466 899999999843211
Q ss_pred cH-----HHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SK-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. .++.. .+....+.+.++. .+++.+||++|.|+.+++
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f 165 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVF 165 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHH
Confidence 11 01111 1223334444442 379999999999999963
No 265
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=1.3e-12 Score=109.59 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=72.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|.+|+|||||+++|+..... ......+.|.......+..++..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------------------------------KVSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------------------------------EESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------------------------------cccccccceeeeeeeeeeeceeeEE
Confidence 5899999999999999999631100 0111234444444455677889999
Q ss_pred EEeCCCCcC---------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 127 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 127 liDtPGh~~---------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
|+||||-.+ ........+..+|++++|+|+..... .+..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-------~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-------EDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-------HHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999543 23345555689999999999877321 23344445554 5565 8999998
No 266
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=1.9e-12 Score=114.93 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=84.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--e
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 123 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--~ 123 (476)
++|+++|+.++|||||+.+++. +.... ...+ ..+. ....+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~------------------------~~~~---~~~~----~~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQ------------------------LESP---EGGR----FKKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCC------------------------CCCC---Cccc----eEEEEEECCEEE
Confidence 4799999999999999998842 21110 0000 0010 012233344 5
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.+|||+|++++ ...+.+|++++|+|.++... |+ .....+..+.. .++| +++|.||+|+...+
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6889999999763 23467899999999887432 22 11222222322 2456 89999999983211
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+..+. .++...+.+.. ..++++++||++|.|++++
T Consensus 116 --~~~v~--~~~~~~~~~~~-----~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 116 --PRVID--DARARQLCADM-----KRCSYYETCATYGLNVERV 150 (158)
T ss_pred --CcccC--HHHHHHHHHHh-----CCCcEEEEecCCCCCHHHH
Confidence 11111 11222333332 1357999999999999986
No 267
>COG2262 HflX GTPases [General function prediction only]
Probab=99.40 E-value=7.7e-13 Score=129.49 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=106.3
Q ss_pred ccccccccccccccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhh
Q 011837 25 EVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEE 104 (476)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e 104 (476)
+.+.+................+.|+++|-.|||||||+|+|.... .. .+
T Consensus 172 eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~------------------------------~~ 220 (411)
T COG2262 172 ELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VY------------------------------VA 220 (411)
T ss_pred HHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-ee------------------------------cc
Confidence 333344444555556666788999999999999999999984111 00 01
Q ss_pred hccccEEeeeeEEEEeC-CeEEEEEeCCCCcCcHH--------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHH
Q 011837 105 RIKGKTVEVGRAHFETE-TTRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 175 (476)
Q Consensus 105 ~~~g~ti~~~~~~~~~~-~~~~~liDtPGh~~f~~--------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l 175 (476)
..--.|.+.....+.+. ++.+.|-||-|.-+-++ .++.....||..++|||+++.... .+..-..
T Consensus 221 d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~ 294 (411)
T COG2262 221 DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVE 294 (411)
T ss_pred ccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHH
Confidence 11225666666677776 68999999999654433 344445689999999999986432 2333333
Q ss_pred HHHHHc---CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 176 MLAKTL---GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 176 ~~~~~l---~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+..+ .+| +|+|.||+|+... . . ....+ ... ....|++||++|.|++.+
T Consensus 295 ~vL~el~~~~~p-~i~v~NKiD~~~~--~-~----~~~~~----~~~------~~~~v~iSA~~~~gl~~L 347 (411)
T COG2262 295 DVLAEIGADEIP-IILVLNKIDLLED--E-E----ILAEL----ERG------SPNPVFISAKTGEGLDLL 347 (411)
T ss_pred HHHHHcCCCCCC-EEEEEecccccCc--h-h----hhhhh----hhc------CCCeEEEEeccCcCHHHH
Confidence 455554 456 8899999998322 1 1 11111 110 114899999999999875
No 268
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.40 E-value=1.9e-12 Score=119.32 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=90.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+|.|+...... ......+.|.......+.+.++.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFE-----------------------------SKLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccc-----------------------------cccCCCCcccccceeeEEECCeEE
Confidence 589999999999999999996432211 111134667776667777889999
Q ss_pred EEEeCCCCcCc-------HHHHhhh----ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-C---CceEEEEE
Q 011837 126 TILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 190 (476)
Q Consensus 126 ~liDtPGh~~f-------~~~~~~~----~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-~---i~~iIvvi 190 (476)
+++||||..+. ...+... ...+|++|+|+++.+ .. ...++.+..++.. | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999996543 2223322 356899999999987 32 3445555555442 4 24588999
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
|+.|....+--++.+......++.+++.++
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999975433222223333466777777764
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.38 E-value=8.6e-12 Score=115.00 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=89.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CCeE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 124 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~ 124 (476)
++|+++|.+|+|||||+++|+... ...... .. .+. ...|... ..+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~-~~~~~~------------------~~-~~~------~~~t~~~--~~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG-HEEEGA------------------AP-TGV------VETTMKR--TPYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC-CCCCCc------------------cc-cCc------cccccCc--eeeecCCCCC
Confidence 689999999999999999985311 000000 00 000 0011111 11111 1347
Q ss_pred EEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 125 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 125 ~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
++++||||..+ |+.. .++..+|++++|.+.. .. ......+..++..+.| +++|.||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~--~~-------~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR--FS-------SNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC--CC-------HHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 89999999643 3322 2356789888875432 21 2344556677777877 899999999843
Q ss_pred cCc---------cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecc--ccccccc
Q 011837 198 VNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKT 242 (476)
Q Consensus 198 ~~~---------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~--~g~~i~~ 242 (476)
.+. .++.++++.+.+...++..+.. ..+++.+|+. .+.|+..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHH
Confidence 221 1133556666666666655543 4589999998 3455554
No 270
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=1e-11 Score=114.17 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=65.6
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~--l~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||+|++++.. ....+.+|++|+|+|.++... |+ ..+. .+..++. -++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 46789999999976432 235689999999999876421 11 1211 1222222 2566 8999999998431
Q ss_pred CccHH-------------HHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~-------------~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.... ...-..++...+.+..+ ++++.+||++|.|++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~ 187 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDV 187 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHH
Confidence 00000 00011233444555543 47999999999999985
No 271
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=5.6e-12 Score=119.40 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=65.3
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..+...-.++++|.+++|||||+++|......+. . ..-.|.......++
T Consensus 58 V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva-------------------~------------y~FTTl~~VPG~l~ 106 (365)
T COG1163 58 VKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVA-------------------D------------YPFTTLEPVPGMLE 106 (365)
T ss_pred EeccCCeEEEEEcCCCccHHHHHHHHhCCCcccc-------------------c------------cCceecccccceEe
Confidence 3344568999999999999999999842211111 0 11245556666788
Q ss_pred eCCeEEEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCCCc
Q 011837 120 TETTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 120 ~~~~~~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~g~ 160 (476)
+++.++.++|+||-- ---++.++.++.||.+++|+|+....
T Consensus 107 Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 107 YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 999999999999832 12355778889999999999998654
No 272
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.37 E-value=2.7e-12 Score=121.00 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=88.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|.+..|+++|-+|||||||+++|......+.+ |+| +|+........+++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~-------------------YaF------------TTL~P~iG~v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-------------------YAF------------TTLRPHIGTVNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccc-------------------cce------------eeeccccceeeccc
Confidence 55678999999999999999999544333321 121 33333333344444
Q ss_pred e-EEEEEeCCCC-----------cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceE
Q 011837 123 T-RFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKL 186 (476)
Q Consensus 123 ~-~~~liDtPGh-----------~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~i 186 (476)
. .+++.|.||- .+|++.. ..|+..++|||.+.+..-.-+ .|.+.....+.. +.-+..
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHi----ER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~yek~L~~rp~ 315 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHI----ERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELELYEKGLADRPA 315 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHH----HhhceEEEEEECCCcccCCHH---HHHHHHHHHHHHHhhhhccCce
Confidence 3 4999999992 2455554 457999999999876210000 122212222222 222336
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
++|+||+|++++ ++ ...+++.+.++ +..++|+||++|+|+.++
T Consensus 316 liVaNKiD~~ea---e~---~~l~~L~~~lq--------~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 316 LIVANKIDLPEA---EK---NLLSSLAKRLQ--------NPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred EEEEeccCchhH---HH---HHHHHHHHHcC--------CCcEEEeeeccccchHHH
Confidence 789999998422 11 11223333322 236999999999999884
No 273
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.6e-12 Score=109.08 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=97.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--C
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..++.++|+.|.|||-|+.+++... . +.....-+.++.+...+... .
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k--f-----------------------------kDdssHTiGveFgSrIinVGgK~ 57 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK--F-----------------------------KDDSSHTIGVEFGSRIVNVGGKT 57 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh--h-----------------------------cccccceeeeeecceeeeecCcE
Confidence 3689999999999999999985211 0 11112223444444444443 4
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
.++.+|||+|+++|..-+.+..+.|-+|+||.|++.... |+ ..-..+.-++.+ +|- +|++.||-||. +
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIv-viL~GnKkDL~--~ 128 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIV-VILCGNKKDLD--P 128 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEE-EEEeCChhhcC--h
Confidence 568999999999999999999999999999999886432 22 122223334444 454 67788999992 2
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+-.+ .+...|..+ +.+-+..+|+++|+|+++-
T Consensus 129 ~R~Vtf----lEAs~FaqE------nel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 129 EREVTF----LEASRFAQE------NELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhhH----HHHHhhhcc------cceeeeeecccccccHHHH
Confidence 112122 223333322 3567899999999999984
No 274
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=8.8e-13 Score=130.97 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=107.5
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
+....-+..++|+|+|.+|+|||||+|+|....-.|. ....|.|.|....
T Consensus 260 ~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV------------------------------Spv~GTTRDaiea 309 (531)
T KOG1191|consen 260 DEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIV------------------------------SPVPGTTRDAIEA 309 (531)
T ss_pred hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEe------------------------------CCCCCcchhhhee
Confidence 3333445569999999999999999999964332222 1267899999999
Q ss_pred EEEeCCeEEEEEeCCCCcCc---------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-----
Q 011837 117 HFETETTRFTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG----- 182 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~f---------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~----- 182 (476)
.|+.+++.+.|.||+|-.+= +......+..||++++||||..+.++ +.......+...+
T Consensus 310 ~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~ 382 (531)
T KOG1191|consen 310 QVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVV 382 (531)
T ss_pred EeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEE
Confidence 99999999999999996651 22223446789999999999887764 3333333443322
Q ss_pred C------ceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCee-EEeeeccccccccccccc
Q 011837 183 V------TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTRVDK 246 (476)
Q Consensus 183 i------~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~ipvSa~~g~~i~~~~~~ 246 (476)
+ .++|+++||.|+... +.++......+....|- ...+ .+.+|+++++|+..+++.
T Consensus 383 ~~~~~~~~~~i~~~nk~D~~s~------~~~~~~~~~~~~~~~~~---~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 383 IVNKMEKQRIILVANKSDLVSK------IPEMTKIPVVYPSAEGR---SVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred EeccccccceEEEechhhccCc------cccccCCceeccccccC---cccceEEEeeechhhhHHHHHHH
Confidence 2 457889999998432 11111111111111111 1234 445999999999987553
No 275
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.3e-12 Score=114.73 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=98.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|.+++|||-|+.++.. +....+...-+-++.....+..++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftr-------------------------------nEF~~~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTR-------------------------------NEFSLESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcc-------------------------------cccCcccccceeEEEEeeceeecCcE
Confidence 46799999999999999998831 111222223344444444445555
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH----HHHHH---cCCceEEEEEEccCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l----~~~~~---l~i~~iIvviNK~Dl 195 (476)
.+..||||.|+++|..-+-...+.|-+|+||.|.+.. +|.+++ ..++. -+++ +++|.||+||
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~----------~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL 131 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR----------QTFENVERWLKELRDHADSNIV-IMLVGNKSDL 131 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhH----------HHHHHHHHHHHHHHhcCCCCeE-EEEeecchhh
Confidence 5568999999999997777778999999999999874 444443 33333 3676 7899999999
Q ss_pred CCcCccHHHHHHH-HHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
-. ...+ .++-+.+... ....|+.+||+.+.|+++.+.
T Consensus 132 ~~-------lraV~te~~k~~Ae~------~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 132 NH-------LRAVPTEDGKAFAEK------EGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred hh-------ccccchhhhHhHHHh------cCceEEEecccccccHHHHHH
Confidence 32 1111 1222223332 245799999999999998643
No 276
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=5.1e-12 Score=112.97 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=67.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE---eC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---TE 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~---~~ 121 (476)
...|.++|+.|||||+|+.+|.+. .... -+|.-.....+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~--~~~~---------------------------------T~tS~e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG--KTVP---------------------------------TVTSMENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS--S------------------------------------B---SSEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CcCC---------------------------------eeccccCCceEEeecCC
Confidence 367899999999999999999542 1000 000001111111 24
Q ss_pred CeEEEEEeCCCCcCcHHHHhhh---ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKM 193 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~---~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~ 193 (476)
+..+.++|+|||.+........ +..+.++|+|||+..-. ..+ ..+.|+|+-+.. .+.+++++++||.
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~--~~~---~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ--KEL---RDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH--HHH---HHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch--hhH---HHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 5679999999999998877776 78899999999997521 111 234444432221 1333499999999
Q ss_pred CCCCc
Q 011837 194 DDHTV 198 (476)
Q Consensus 194 Dl~~~ 198 (476)
|+..+
T Consensus 123 Dl~~A 127 (181)
T PF09439_consen 123 DLFTA 127 (181)
T ss_dssp TSTT-
T ss_pred ccccc
Confidence 99655
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1e-11 Score=118.21 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=94.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..+.|+|.|++|+|||||+.+|......+. .| .-.|-.....+|+.+..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA-------------------~Y------------PFTTK~i~vGhfe~~~~ 215 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVA-------------------PY------------PFTTKGIHVGHFERGYL 215 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccC-------------------CC------------CccccceeEeeeecCCc
Confidence 458999999999999999999832221111 11 12333455567888889
Q ss_pred EEEEEeCCCCcC--------cHHHHhhhcc-ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 124 RFTILDAPGHKS--------YVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~~--------f~~~~~~~~~-~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
++.+|||||--| .-++.+.+++ ..+++|+++|++... |+....|..-.-.+-..++.| +++|+||+|
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D 291 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GYSLEEQISLLEEIKELFKAP-IVVVINKID 291 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CCCHHHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 999999999432 2444556664 789999999998743 343223322222222334545 999999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ++ .+.++++...+ ...|. ...+-+|+..+.+++..
T Consensus 292 ~--~~--~e~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 292 I--AD--EEKLEEIEASV----LEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred c--cc--hhHHHHHHHHH----Hhhcc-----ccccceeeeehhhHHHH
Confidence 8 32 34455544433 22221 23466777777777653
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3e-12 Score=110.18 Aligned_cols=165 Identities=21% Similarity=0.166 Sum_probs=106.3
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.+|....|.|+|.-+|||||++.++-... .-........+ --.|+.....+.+.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~-------------------------~~~~~~l~~~k-i~~tvgLnig~i~v 66 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDF-------------------------SKAYGGLNPSK-ITPTVGLNIGTIEV 66 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHH-------------------------HhhhcCCCHHH-eecccceeecceee
Confidence 45677899999999999999998872110 00000000011 11334444555666
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCC-ccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g-~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
++..+.|||..|++............|+++++||||++. -|+..- .+.+.....=...|+| +++.+||-|+..+
T Consensus 67 ~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~- 141 (197)
T KOG0076|consen 67 CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA- 141 (197)
T ss_pred ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh-
Confidence 788999999999999988888888999999999999983 332111 1222223333346898 7789999999432
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
....+ +...+......+..+.++.||||++|+|+.+-
T Consensus 142 ---~~~~E----l~~~~~~~e~~~~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 ---MEAAE----LDGVFGLAELIPRRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred ---hhHHH----HHHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence 22223 33333211112235779999999999999883
No 279
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=5.8e-12 Score=106.75 Aligned_cols=149 Identities=18% Similarity=0.179 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE--EEeC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FETE 121 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~--~~~~ 121 (476)
..++|.++|..|+|||+|+-++. .. ....+...-|-++..... +...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv--~~-----------------------------~fd~~~~~tIGvDFkvk~m~vdg~ 58 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFV--SN-----------------------------TFDDLHPTTIGVDFKVKVMQVDGK 58 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHH--hc-----------------------------ccCccCCceeeeeEEEEEEEEcCc
Confidence 45899999999999999997763 11 111222222333333333 4445
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH-HHHHHc----CCceEEEEEEccCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL----GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~l----~i~~iIvviNK~Dl~ 196 (476)
..++.||||+|+++|...+-+..+.|.++|+|.|.+.... |. . .+++ ..+..+ .+- .++|.||+|..
T Consensus 59 ~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---k-Ld~W~~Eld~Ystn~dii-kmlVgNKiDke 130 (209)
T KOG0080|consen 59 RLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---K-LDIWLKELDLYSTNPDII-KMLVGNKIDKE 130 (209)
T ss_pred eEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---h-HHHHHHHHHhhcCCccHh-Hhhhcccccch
Confidence 5779999999999999999999999999999999887432 11 1 1222 222222 233 24799999972
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ++. --.++=..+.++. ..-|+.+||++.+|+...
T Consensus 131 s-----~R~-V~reEG~kfAr~h------~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 131 S-----ERV-VDREEGLKFARKH------RCLFIECSAKTRENVQCC 165 (209)
T ss_pred h-----ccc-ccHHHHHHHHHhh------CcEEEEcchhhhccHHHH
Confidence 1 121 1123334455554 357999999999999874
No 280
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=1.7e-11 Score=113.98 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=105.1
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee-eE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RA 116 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~ 116 (476)
.+..++++.||.++|..|+|||+|+|+|.+....-.+ .-|++.+.. ..
T Consensus 32 ~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-------------------------------~vg~~t~~~~~~ 80 (296)
T COG3596 32 LQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVS-------------------------------KVGVGTDITTRL 80 (296)
T ss_pred hhhcccCceeEEEecCCCCcHHHHHHHHHhccCceee-------------------------------ecccCCCchhhH
Confidence 3445788899999999999999999999632211000 001111111 11
Q ss_pred EEEeCCeEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC-ceEEE
Q 011837 117 HFETETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLL 188 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i-~~iIv 188 (476)
...+++..++||||||..+ |.......+...|.+++++++.+... +.....+......+. .++++
T Consensus 81 ~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~ 153 (296)
T COG3596 81 RLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLF 153 (296)
T ss_pred HhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEE
Confidence 1234568899999999655 77777788899999999999988763 333444444555554 56999
Q ss_pred EEEccCCCCc--CccH----------HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTV--NWSK----------ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~--~~~~----------~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+||.+|+... +|+. +..++-.+.+.+++.. --|++.+|+..++|++.+
T Consensus 154 ~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 154 VVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred EEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHH
Confidence 9999998644 2321 2233334444445443 348888898888898885
No 281
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.31 E-value=5.4e-11 Score=109.71 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=87.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 120 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~----- 120 (476)
++|+++|..++|||||+.+++. +... ++....+..+.....+.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~--~~f~-----------------------------~~~~~Tig~~~~~k~~~~~~~~~ 49 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK--NQVL-----------------------------GRPSWTVGCSVDVKHHTYKEGTP 49 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCcceeeeEEEEEEEEcCCCC
Confidence 4799999999999999999842 1110 001111111222222222
Q ss_pred --CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------------------
Q 011837 121 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------------ 180 (476)
Q Consensus 121 --~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------------------ 180 (476)
....+.||||+|+++|....-..++.+|++|+|+|.+.... |+ .....+..+..
T Consensus 50 ~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~ 123 (202)
T cd04102 50 EEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSE 123 (202)
T ss_pred CCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhcccccccccccccccc
Confidence 23578999999999998877777899999999999987532 11 11122222221
Q ss_pred ----cCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccc
Q 011837 181 ----LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 181 ----l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~ 242 (476)
.++| +|+|.||+|+... ....-+.....-..+.+.+| .+.+.+++.....+..
T Consensus 124 ~~~~~~~P-iilVGnK~Dl~~~--r~~~~~~~~~~~~~ia~~~~------~~~i~~~c~~~~~~~~ 180 (202)
T cd04102 124 QFGGNQIP-LLVIGTKLDQIPE--KESSGNLVLTARGFVAEQGN------AEEINLNCTNGRLLAA 180 (202)
T ss_pred ccCCCCce-EEEEEECccchhh--cccchHHHhhHhhhHHHhcC------CceEEEecCCcccccC
Confidence 2466 8999999999321 00011111122222333443 4567777776665544
No 282
>PLN00023 GTP-binding protein; Provisional
Probab=99.30 E-value=4.3e-11 Score=116.04 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=86.3
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|+.++|||||+.+|+. +.... .....-|.+.......+..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~--g~F~~---------------------------~~~pTIG~d~~ik~I~~~~ 67 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVK--GSSIA---------------------------RPPQTIGCTVGVKHITYGS 67 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhc--CCccc---------------------------ccCCceeeeEEEEEEEECC
Confidence 345568999999999999999999842 21100 0001112222222222211
Q ss_pred -------------CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc------
Q 011837 121 -------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------ 181 (476)
Q Consensus 121 -------------~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l------ 181 (476)
....+.||||+|++.|....-..++.+|++|+|+|.+.... |+ .....+..+...
T Consensus 68 ~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s~p 141 (334)
T PLN00023 68 PGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFSAP 141 (334)
T ss_pred cccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcccccc
Confidence 13568999999999998877778899999999999887421 11 122222223322
Q ss_pred ---------CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 182 ---------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 182 ---------~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
++| +|||.||+|+....-.........++.+.+.++.|+-
T Consensus 142 ~~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 142 LGSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 366 8999999999321100000012345666677776653
No 283
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.9e-12 Score=105.59 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=100.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CCeE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 124 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~~ 124 (476)
.++.++|+..+|||+++-+-+. .||-.+++. .-|+....... ++. ...+
T Consensus 22 fKlliiGnssvGKTSfl~ry~d----------------------dSFt~afvs-------TvGidFKvKTv-yr~~kRik 71 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYAD----------------------DSFTSAFVS-------TVGIDFKVKTV-YRSDKRIK 71 (193)
T ss_pred eeEEEEccCCccchhhhHHhhc----------------------cccccceee-------eeeeeEEEeEe-eecccEEE
Confidence 3899999999999999876531 122222221 12333222222 222 2356
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
+.+|||.|++.|..-+....++|++.||+.|.+.... |+....+.-.+......+.+ +|+|.||+|+.. ++
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeS---f~svqdw~tqIktysw~naq-vilvgnKCDmd~-----eR 142 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDS-----ER 142 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHH---HHHHHHHHHHheeeeccCce-EEEEecccCCcc-----ce
Confidence 8999999999998888888899999999999876432 22111222223333446787 899999999832 22
Q ss_pred HHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.- ..+..+.+...+|| .++..||+.+.|+.++.+
T Consensus 143 vi-s~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 143 VI-SHERGRQLADQLGF------EFFETSAKENINVKQVFE 176 (193)
T ss_pred ee-eHHHHHHHHHHhCh------HHhhhcccccccHHHHHH
Confidence 21 22445556677776 489999999999998643
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=7.6e-12 Score=115.44 Aligned_cols=202 Identities=13% Similarity=0.199 Sum_probs=117.1
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcch-HHHHHHHHHHhhc-------CccchhhhhhcCCchhhhccccEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD-RTIQKYEKEAKDK-------SRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~-~~~~~~~~~~~~~-------g~~s~~~~~~~d~~~~e~~~g~ti 111 (476)
...+..+.|.++|..||||||++.+|......-.. ...-++.....+. =|.+..|..+|.........||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 34456688999999999999999998543211000 0000000111111 134445566666666666777766
Q ss_pred eeeeEEEE-----------eCCeEEEEEeCCCCcCcHH-----HHh---hhccccCEEEEEEECCCCccccccCCCCchH
Q 011837 112 EVGRAHFE-----------TETTRFTILDAPGHKSYVP-----NMI---SGASQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 112 ~~~~~~~~-----------~~~~~~~liDtPGh~~f~~-----~~~---~~~~~aD~avlVVda~~g~~e~~~~~~~qt~ 172 (476)
.+...... .+...+.||||||+..... ..+ .+.+.+-++++|||..+.-.++.|. ....
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMl 171 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNML 171 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHH
Confidence 55433211 1345689999999754311 111 1234678899999988776655554 3444
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCcCccHHH---HHHHHHHHHH--------HHHhccCC---cCCCeeEEeeeccccc
Q 011837 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER---YDEIESKMTP--------FLKASGYN---VKKDVQFLPISGLMGL 238 (476)
Q Consensus 173 e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~---~~~~~~~l~~--------~l~~~~~~---~~~~~~~ipvSa~~g~ 238 (476)
....++....+| +||+.||.|+.+..+..++ |+...+.+++ +..+..+. -..+++.+.+|+.+|.
T Consensus 172 YAcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 172 YACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 445566667898 9999999999665443322 2222222221 11111000 0125789999999999
Q ss_pred cccccc
Q 011837 239 NMKTRV 244 (476)
Q Consensus 239 ~i~~~~ 244 (476)
|++++.
T Consensus 251 G~ddf~ 256 (366)
T KOG1532|consen 251 GFDDFF 256 (366)
T ss_pred cHHHHH
Confidence 999854
No 285
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.4e-11 Score=101.61 Aligned_cols=151 Identities=20% Similarity=0.198 Sum_probs=101.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee--eEEEEe-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG--RAHFET- 120 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~--~~~~~~- 120 (476)
-..+|+++|+.|+|||-|+.++ ..|....+ +|-||-+. ....+.
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEEC
Confidence 3578999999999999999988 55554432 23444433 333444
Q ss_pred -CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 121 -~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
++.++.+|||.|+++|..-+.+..+.|++.|||.|.+.... |+-.+.+...+..-...++- -|+|.||+|+.+.
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~~dr- 127 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDLADR- 127 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccchhhh-
Confidence 45678999999999999999999999999999999765432 43334454444443334443 3689999999321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.++-+++.+-+.... +.-|+.+||+..+|++.+
T Consensus 128 ------revp~qigeefs~~q-----dmyfletsakea~nve~l 160 (213)
T KOG0095|consen 128 ------REVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKL 160 (213)
T ss_pred ------hhhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHH
Confidence 122233333222221 235789999999999986
No 286
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.27 E-value=6.9e-12 Score=105.54 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+|+|+.++|||||+++|+..... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6899999999999999999642211 0001111223333333333334445699
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEccC
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 194 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~D 194 (476)
|+|++|+..+.......+..+|++++|+|+++... + .+..+.+..+.. .++| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~---~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---L---EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---H---HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---H---HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998887765555889999999999987431 1 122222222222 2477 899999998
No 287
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.2e-11 Score=106.72 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=106.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...+...+|.++|--+|||||++.+| +.|.+. ..--|+....-.++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykL--k~~E~v--------------------------------ttvPTiGfnVE~v~ 57 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKL--KLGEIV--------------------------------TTVPTIGFNVETVE 57 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEee--ccCCcc--------------------------------cCCCccccceeEEE
Confidence 34567799999999999999998877 333211 11235555555677
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl 195 (476)
+.+..|++||..|+.++.+....+....+++|+|||+++..- ...+++.+..... .+.| ++++.||.|+
T Consensus 58 ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~ 130 (181)
T KOG0070|consen 58 YKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDL 130 (181)
T ss_pred EcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhc
Confidence 789999999999999999999999999999999999987431 1223333322211 2455 8899999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.+- + ..++...+.-..+.. ....+-+++|.+|+|+.+-
T Consensus 131 ~~al-s-------~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 131 PGAL-S-------AAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred cccC-C-------HHHHHhHhhhhccCC-CCcEEeeccccccccHHHH
Confidence 6542 2 233333333333331 3456889999999998874
No 288
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.26 E-value=1.2e-10 Score=112.81 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=87.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..+|+++|+.|+|||||+++|+... ...... -.+.......+.+.+......++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~--------------------~~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTK-LIPSDY--------------------PPDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCC-CccccC--------------------CCCccccccCCceEEEEEEEEEEECCEE
Confidence 4799999999999999999995321 111000 00000111223334454455555555
Q ss_pred eEEEEEeCCCCcCcHH---------------------HHhh-----hc--cccCEEEEEEECCC-CccccccCCCCchHH
Q 011837 123 TRFTILDAPGHKSYVP---------------------NMIS-----GA--SQADIGVLVISARK-GEFETGFEKGGQTRE 173 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~---------------------~~~~-----~~--~~aD~avlVVda~~-g~~e~~~~~~~qt~e 173 (476)
.+++++||||..++.. +... .+ ..+|++++++++.. +.. ....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~-------~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLK-------PLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCC-------HHHHH
Confidence 4699999999655432 1111 11 15789999999875 331 23355
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 174 ~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
.+..+.. ++| +|+|+||+|+. .++.....++.+.+.+...++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l----~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL----TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC----CHHHHHHHHHHHHHHHHHcCC
Confidence 5555554 677 88999999983 244556677788888877654
No 289
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.26 E-value=2.4e-11 Score=101.57 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=103.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+....+.++|--+||||||++.. .+|... +.-+.|+-.....+...+
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~i--a~g~~~-------------------------------edmiptvGfnmrk~tkgn 64 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVI--ARGQYL-------------------------------EDMIPTVGFNMRKVTKGN 64 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEE--eeccch-------------------------------hhhcccccceeEEeccCc
Confidence 34578899999999999999976 232111 112234444455566677
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++|.||+..|.....+..+.+++++++|||.+... + .-.++.+.-+ ...|+| ++|..||.|++++
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k---~---~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK---L---EASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGA 137 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc---c---hhhHHHHHHHhcchhhcCCc-EEEecccccCccc
Confidence 889999999999999999999999999999999987431 1 2344443322 234788 8899999999655
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCc--CCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~ipvSa~~g~~i~~~ 243 (476)
.++.. ++.++|... ...+..+.+|++...|++..
T Consensus 138 -L~~~~----------li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 138 -LSKIA----------LIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred -ccHHH----------HHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 22211 122223221 23677889999999999874
No 290
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.24 E-value=1.4e-10 Score=108.62 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=95.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--C
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|..|+|||||+++|.. + ...++....+............ .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~--~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVG--D-----------------------------EFPEGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhc--C-----------------------------cCcccCCCceeeeeEEEEEEeCCCE
Confidence 38999999999999999999942 1 1111122222333333333333 4
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH-HHHHHcC---CceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLG---VTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~l~---i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||+|+++|...+-.....++++++++|...... + ....+++ ..+..+. .+ ++++.||+|+...
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~---~---~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES---S---DELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh---h---hHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 668999999999999888888899999999999876211 0 2333333 3444433 66 9999999999543
Q ss_pred CccHHHHHHH------HHHHHHHHHhccCCcCCCeeEEeeecc--ccccccccc
Q 011837 199 NWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~------~~~l~~~l~~~~~~~~~~~~~ipvSa~--~g~~i~~~~ 244 (476)
......+... ............ .....++.+|+. .+.|+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~v~~~~ 177 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPE---VANPALLETSAKSLTGPNVNELF 177 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhh---hcccceeEeecccCCCcCHHHHH
Confidence 2111111100 011111111110 012238899999 888888753
No 291
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1e-10 Score=104.44 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=78.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
..|.++|..|||||+|+-+|.+. . -+..-.++......+...+...
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~g--s--------------------------------~~~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITG--S--------------------------------HRGTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcC--C--------------------------------ccCeeeeeccceeeEeecCcce
Confidence 68999999999999999888432 0 0112234445556677777789
Q ss_pred EEEeCCCCcCcHHHHhhhcc---ccCEEEEEEECCCCccccccCCCCchHHHHHHHH-----H---cCCceEEEEEEccC
Q 011837 126 TILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----T---LGVTKLLLVVNKMD 194 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~---~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-----~---l~i~~iIvviNK~D 194 (476)
+|+|.|||.+........+. .+-++|+|||+..-. ...+....++. . .+.+++.+++||.|
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 99999999998777776665 789999999987632 23333322211 1 23455999999999
Q ss_pred CCCcC
Q 011837 195 DHTVN 199 (476)
Q Consensus 195 l~~~~ 199 (476)
+..+.
T Consensus 157 l~tAk 161 (238)
T KOG0090|consen 157 LFTAK 161 (238)
T ss_pred hhhcC
Confidence 97664
No 292
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.21 E-value=1.8e-10 Score=107.65 Aligned_cols=153 Identities=16% Similarity=0.310 Sum_probs=97.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE-eCCeEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTRF 125 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~~~~~~ 125 (476)
+|.++|..+|||||+...+..... . .+-+.-|.|++.....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~--p----------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS--P----------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS-----G----------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC--c----------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 689999999999999988743211 0 111234567777666665 345699
Q ss_pred EEEeCCCCcCcHHHH-----hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCc
Q 011837 126 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 126 ~liDtPGh~~f~~~~-----~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~ 198 (476)
++||+||+.+|..+. ..-++.+++.|+|+|+.....+..+. .....+..+... +++ +.|++.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999999887763 33468899999999999544322221 223333334443 455 8899999999766
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~ 236 (476)
+..++.++.+.+.+.+.+...++. .+.+..+|-+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 666777888888888888877654 57888888765
No 293
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.20 E-value=2.3e-10 Score=92.07 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=76.7
Q ss_pred CCCCeEEEEEEEE--c--------cCCeEEEEEEEEeeEecCCEEEEecC-------C-----ceEEEEEEEECCeeeee
Q 011837 271 PNGPFRMPIIDKF--K--------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 328 (476)
Q Consensus 271 ~~~p~~~~v~~~~--~--------~~G~v~~g~v~sG~l~~gd~v~~~p~-------~-----~~~~V~si~~~~~~v~~ 328 (476)
.++|++|+|.++| . .+|.|+.|+|.+|.|++||+|.+.|. + ...+|.||+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4689999999999 2 57999999999999999999999987 2 25689999999999999
Q ss_pred cCCCCeEEE---EEeccCccCceeeeEEecCC
Q 011837 329 AGPGENLRI---RLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 329 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~~ 357 (476)
|.||+.+++ -.+++.+.|..+|+|++.|+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~pG 113 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEPG 113 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecCC
Confidence 999999999 55688888999999998763
No 294
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.20 E-value=2.2e-10 Score=92.72 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=78.8
Q ss_pred eeEEecCCCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEE
Q 011837 350 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 350 G~vl~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
|++++.++...+ +++|.+++.++... ..+++.++++.+|+++..+.|+|.-+ +. +.+.+|+.+.
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~ll----~~----------~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVLL----DR----------DELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEeC----Cc----------cccCCCCEEE
Confidence 788998875443 69999999885432 26799999999999999999998732 21 2388999999
Q ss_pred EEEEEcceEEeecccCccccceEEEEeCC--cEEEEEEE
Q 011837 430 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 466 (476)
Q Consensus 430 v~~~~~~pi~~e~~~~~~~lgrfilr~~~--~tva~G~V 466 (476)
++++|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999998775 699999998 99999986
No 295
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.17 E-value=3.6e-10 Score=88.76 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=68.7
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
..|.++| ++.|+++.|+|.+|.|++|+.+.++|++ ...+|+||+.+++++++|.+|+.|+|.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4577788 5668999999999999999999999999 67799999999999999999999999999887 799999
Q ss_pred EE
Q 011837 352 VL 353 (476)
Q Consensus 352 vl 353 (476)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 296
>PTZ00099 rab6; Provisional
Probab=99.16 E-value=1.4e-10 Score=104.76 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=69.0
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHHc--CCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTL--GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~l--~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+++|...+...++.+|++|+|+|++.... |+ ...+.+. +.... ++| +|+|.||+|+...
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~ 100 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLGDL 100 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 4678899999999998888788899999999999987431 11 2222222 22222 355 7899999999421
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. +-.. ++...+.... ...++++||++|.|+.+++
T Consensus 101 ~--~v~~----~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf 134 (176)
T PTZ00099 101 R--KVTY----EEGMQKAQEY------NTMFHETSAKAGHNIKVLF 134 (176)
T ss_pred c--CCCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 1 0011 1222233333 2468999999999999963
No 297
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=98.42 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=97.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+++++|.-=+|||+|+=+.. ........+-.++. +|... ...++.....
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~--EnkFn~kHlsTlQA------------SF~~k---------------k~n~ed~ra~ 63 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYV--ENKFNCKHLSTLQA------------SFQNK---------------KVNVEDCRAD 63 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHH--HhhcchhhHHHHHH------------HHhhc---------------ccccccceee
Confidence 5789999999999999986543 22222221111100 11110 1112223456
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
+.+|||+|+++|...---..+.+|+++||.|.++... |++...+-..++.+....+. +++|.||+|| ++.
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdS---FqKVKnWV~Elr~mlGnei~-l~IVGNKiDL------Eee 133 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDS---FQKVKNWVLELRTMLGNEIE-LLIVGNKIDL------EEE 133 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHH---HHHHHHHHHHHHHHhCCeeE-EEEecCcccH------HHh
Confidence 8999999999998766566789999999999887432 33212222222223323355 7889999999 223
Q ss_pred HHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
..-..++...+....| ..++.+||+.+.|+.++++
T Consensus 134 R~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 134 RQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred hhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 3334455556666655 4689999999999999644
No 298
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.13 E-value=2.9e-10 Score=108.77 Aligned_cols=152 Identities=19% Similarity=0.197 Sum_probs=92.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEee--eeEEEEe
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV--GRAHFET 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~--~~~~~~~ 120 (476)
|-.-.|+++|-+|+|||||++++......|.+. +-+|+.. +.+.. .
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIadY-------------------------------pFTTL~PnLGvV~~-~ 204 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIADY-------------------------------PFTTLVPNLGVVRV-D 204 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccCC-------------------------------ccccccCcccEEEe-c
Confidence 445578999999999999999985544433321 1123332 33333 3
Q ss_pred CCeEEEEEeCCC-----------CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCc
Q 011837 121 ETTRFTILDAPG-----------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVT 184 (476)
Q Consensus 121 ~~~~~~liDtPG-----------h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~ 184 (476)
....|++.|.|| -.+|++...+ +-+.++|||.+...- -+...+.+.....+.+ .+.|
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~---~dp~~~~~~i~~EL~~Y~~~L~~K~ 277 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDG---RDPIEDYQTIRNELEKYSPKLAEKP 277 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccC---CCHHHHHHHHHHHHHHhhHHhccCc
Confidence 567799999999 2367777554 578999999875320 0000111111122222 3455
Q ss_pred eEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 185 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 185 ~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+||.||||++. +++.++..++.+.+.. ++ ..++++||.+++|++++..
T Consensus 278 -~ivv~NKiD~~~---~~e~~~~~~~~l~~~~---~~-----~~~~~ISa~t~~g~~~L~~ 326 (369)
T COG0536 278 -RIVVLNKIDLPL---DEEELEELKKALAEAL---GW-----EVFYLISALTREGLDELLR 326 (369)
T ss_pred -eEEEEeccCCCc---CHHHHHHHHHHHHHhc---CC-----CcceeeehhcccCHHHHHH
Confidence 678999999632 4566666665554432 22 1333499999999998644
No 299
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.2e-09 Score=90.54 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=99.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
+.+-.|+|..|+|||-|+.++..+ .++.|. ...+.++.+...++..+
T Consensus 11 ifkyiiigdmgvgkscllhqftek--------------------------kfmadc-----phtigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEK--------------------------KFMADC-----PHTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHH--------------------------HHhhcC-----CcccceecceeEEEecCcE
Confidence 567789999999999999887321 122222 12244455555555555
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH----HHHcCCc--eEEEEEEccCCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVT--KLLLVVNKMDDH 196 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~----~~~l~i~--~iIvviNK~Dl~ 196 (476)
.++.+|||.|+++|..-+.+..+.+-++++|.|.+.. .|-.|+.. ++.+.-| .++++.||.|+.
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrr----------stynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh----------hhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 5678999999999999999999999999999999874 45566543 3334333 256788999993
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+...-.+++. ..+..+ ...-|+..||++|.|+++.
T Consensus 130 --~qrdv~yeea----k~faee------ngl~fle~saktg~nveda 164 (215)
T KOG0097|consen 130 --SQRDVTYEEA----KEFAEE------NGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred --hcccCcHHHH----HHHHhh------cCeEEEEecccccCcHHHH
Confidence 2122223333 334433 3567999999999999874
No 300
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.11 E-value=3.6e-09 Score=100.58 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=76.2
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
+......++|+++|.+|+|||||+|+|+...... ..+ ..+.|........
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~------------------------v~~------~~~~T~~~~~~~~ 74 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAA------------------------TSA------FQSETLRVREVSG 74 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcc------------------------cCC------CCCceEEEEEEEE
Confidence 3445667999999999999999999996422100 001 1234555555556
Q ss_pred EeCCeEEEEEeCCCCcCcH------HH----Hhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCC--
Q 011837 119 ETETTRFTILDAPGHKSYV------PN----MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV-- 183 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~------~~----~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i-- 183 (476)
..++..+++|||||..+.. .. +...+ ...|++++|...+..-+ . ......+..+.. +|.
T Consensus 75 ~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~----~--~~d~~llk~I~e~fG~~i 148 (249)
T cd01853 75 TVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR----D--YLDLPLLRAITDSFGPSI 148 (249)
T ss_pred EECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC----C--HHHHHHHHHHHHHhChhh
Confidence 6788999999999976552 11 11122 25788888865554221 0 122333433332 442
Q ss_pred -ceEEEEEEccCCCCcC
Q 011837 184 -TKLLLVVNKMDDHTVN 199 (476)
Q Consensus 184 -~~iIvviNK~Dl~~~~ 199 (476)
.++|+|+||+|...++
T Consensus 149 ~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 149 WRNAIVVLTHAASSPPD 165 (249)
T ss_pred HhCEEEEEeCCccCCCC
Confidence 3589999999986443
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.09 E-value=1.2e-09 Score=107.55 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
..++.+.|+||+|...-. ...+..||.+++|++...|. ....+. ...+.+. -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd---------~iq~~k--~gi~E~a-DIiVVNKaDl~~~- 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD---------ELQGIK--KGIMELA-DLIVINKADGDNK- 209 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH---------HHHHHH--hhhhhhh-heEEeehhcccch-
Confidence 357889999999965221 22356899999998754442 111111 1122333 2689999998432
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCc-CCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
...+....++...+....-.. .-..|++++||++|.|++++.+
T Consensus 210 ---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 ---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 233455555665554322000 0125899999999999998644
No 302
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.08 E-value=5.9e-10 Score=93.34 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=99.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--CCeE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTR 124 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--~~~~ 124 (476)
+..|+|.+++|||+|+-++. .. .|..++++ -+.++......+. ...+
T Consensus 10 kllIigDsgVGKssLl~rF~--dd--------------------tFs~sYit---------TiGvDfkirTv~i~G~~Vk 58 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFA--DD--------------------TFSGSYIT---------TIGVDFKIRTVDINGDRVK 58 (198)
T ss_pred HHHeecCCcccHHHHHHHHh--hc--------------------ccccceEE---------EeeeeEEEEEeecCCcEEE
Confidence 45789999999999997762 11 11112221 1223333333444 4467
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCccH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.||||+|++.|...+-...+..+++++|.|.+.|.. | ..-++.+..++.. .+| -++|.||.|.++.
T Consensus 59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~R---- 127 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPER---- 127 (198)
T ss_pred EEEeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCccc----
Confidence 8999999999999888889999999999999998763 3 3455555555543 466 4689999998532
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
-.-..++.+.+....| +.++.+|++...|++.++
T Consensus 128 --rvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 128 --RVVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred --eeeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 1112244555555554 568999999999999853
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.07 E-value=9e-11 Score=110.87 Aligned_cols=113 Identities=15% Similarity=0.254 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCcCcHHH------Hhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVPN------MISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~------~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.|+||||+.++... .+..+. ..=++++++|+..-.....|- ......+.....+++| .|.|+||+|
T Consensus 91 ~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp -SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 37999999998776433 333333 456789999987532110010 1111122233447999 678999999
Q ss_pred CCCcCccHHH-----------------HHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~-----------------~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.... .+.. +....+.+..++..++. ..+++|+|+.+++|+.++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHH
Confidence 95421 1111 12223334444444332 238999999999999884
No 304
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.07 E-value=5e-10 Score=91.40 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=85.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+++++|.+++|||||++.|-... .+ .--|. .+++.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------------------------~l--------ykKTQ-----Ave~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------------------------TL--------YKKTQ-----AVEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------------------------hh--------hcccc-----eeeccCc--
Confidence 378999999999999999982100 00 00011 1122111
Q ss_pred EEEeCCC----CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPG----h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
-.||||| |..+-...+.....+|+.++|-.++++.. -|. -.++. .+.+++|-+|+|.|++.
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s--~f~--------p~f~~-~~~k~vIgvVTK~DLae---- 104 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES--RFP--------PGFLD-IGVKKVIGVVTKADLAE---- 104 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc--cCC--------ccccc-ccccceEEEEecccccc----
Confidence 2689999 66666667777789999999999988631 111 11222 23334889999999942
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++ +..+.+|...|-. +++.+|+....|++++
T Consensus 105 d~dI----~~~~~~L~eaGa~-----~IF~~s~~d~~gv~~l 137 (148)
T COG4917 105 DADI----SLVKRWLREAGAE-----PIFETSAVDNQGVEEL 137 (148)
T ss_pred hHhH----HHHHHHHHHcCCc-----ceEEEeccCcccHHHH
Confidence 2333 3444566666643 7999999999999984
No 305
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=3.9e-10 Score=96.07 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=96.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-C--C
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-E--T 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~--~ 122 (476)
.++.++|..-+|||+|+..+ ..|.... +.| +.+.+|.-...++. + .
T Consensus 9 frlivigdstvgkssll~~f--t~gkfae----------------------lsd-------ptvgvdffarlie~~pg~r 57 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAE----------------------LSD-------PTVGVDFFARLIELRPGYR 57 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccc----------------------cCC-------CccchHHHHHHHhcCCCcE
Confidence 57899999999999999876 3443211 111 11111111111111 1 2
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH-----HHcC---CceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLG---VTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-----~~l~---i~~iIvviNK~D 194 (476)
.++.||||+|+++|..-+.+..+++=++++|.|.+.. ..-||.... ...+ .+-+.+|..|.|
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsD 127 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSD 127 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence 4678999999999999999999999999999998763 344454322 1222 123677899999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+.. .-+-..++-+.+.+..|+ .||.+|+++|.|+++.+
T Consensus 128 L~S------qRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 128 LQS------QRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAF 165 (213)
T ss_pred hhh------hccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHH
Confidence 932 222334566677777765 59999999999999854
No 306
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.05 E-value=3.1e-09 Score=104.53 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=27.9
Q ss_pred eEEEEEeCCCC----cCcH---HHHhhhccccCEEEEEEECCC
Q 011837 123 TRFTILDAPGH----KSYV---PNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ~~~~liDtPGh----~~f~---~~~~~~~~~aD~avlVVda~~ 158 (476)
..+.|+||||. .++. ...+..++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 56999999996 3332 345566899999999999974
No 307
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=99.00 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=97.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEE-eeeeEEEEeC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE- 121 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti-~~~~~~~~~~- 121 (476)
...+|+++|..|+|||+|+-++++.. +.-+ .. -|+ +.....+..+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~--------------------------f~~~-----y~--ptied~y~k~~~v~~ 48 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR--------------------------FVED-----YD--PTIEDSYRKELTVDG 48 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc--------------------------cccc-----cC--CCccccceEEEEECC
Confidence 35799999999999999998875321 0001 01 111 2222222233
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCCCCcC
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~ 199 (476)
...+.|+||+|.++|.......+..+|+.++|.+.++-.. |+...+.++++...+. ..+| +|+|.||+|+...
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~- 123 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE- 123 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc-
Confidence 3557799999999999988899999999999999876431 3322344555422222 2467 8999999999431
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+ -..++-..+...+ .++++.+||+...|+++++
T Consensus 124 -R~----V~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~F 157 (196)
T KOG0395|consen 124 -RQ----VSEEEGKALARSW------GCAFIETSAKLNYNVDEVF 157 (196)
T ss_pred -cc----cCHHHHHHHHHhc------CCcEEEeeccCCcCHHHHH
Confidence 01 1112233333443 3569999999999999863
No 308
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=1.8e-09 Score=103.28 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=64.2
Q ss_pred CeEEEEEeCCCCcCcH------HHHhhhccc--cCEEEEEEECCCCccccccCCCCchHHHHHHH-----HHcCCceEEE
Q 011837 122 TTRFTILDAPGHKSYV------PNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLA-----KTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~------~~~~~~~~~--aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-----~~l~i~~iIv 188 (476)
+..+.++|+||+.++. +.+...+.. ++++++|+|+..+.. ....+....+ ...++| +|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3478999999976642 222333333 899999999987542 1222222221 146787 788
Q ss_pred EEEccCCCCcCccHHHHHHHHHH---------------------HHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESK---------------------MTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~---------------------l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+...+.. +.+....+. +...++..+. ..+++++|++++.|++++
T Consensus 168 v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 168 VLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred EEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHH
Confidence 9999999433211 112121111 1112333331 347999999999999984
No 309
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=7.4e-09 Score=86.14 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|..+|-.+|||||++-.| ..+..+. .-.|+-.....+.+.+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKL--kl~~~~~--------------------------------~ipTvGFnvetVtykN 60 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKL--KLGQSVT--------------------------------TIPTVGFNVETVTYKN 60 (180)
T ss_pred cccceEEEEecccCCceehhhHH--hcCCCcc--------------------------------cccccceeEEEEEeee
Confidence 34688999999999999998887 2221110 0122233334456778
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH---Hc-CCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TL-GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~---~l-~i~~iIvviNK~Dl~~~ 198 (476)
.+|+.+|..|+.+..+-.........+.|+|+|+....- ....++.+..+. .+ ..+ ++|..||-|++.+
T Consensus 61 ~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr------~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A 133 (180)
T KOG0071|consen 61 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR------IEEARNELHRIINDREMRDAI-ILILANKQDLPDA 133 (180)
T ss_pred eEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh------HHHHHHHHHHHhCCHhhhcce-EEEEecCcccccc
Confidence 999999999999999999999999999999999766421 012333222111 12 355 7889999999655
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~ 242 (476)
- + . ++++.++.--... ....-+.|+|+.+|+|+.+
T Consensus 134 ~-~---p----qei~d~leLe~~r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 134 M-K---P----QEIQDKLELERIR-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred c-C---H----HHHHHHhcccccc-CCccEeeccccccchhHHH
Confidence 2 2 2 2333333211111 2345678999999999887
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.01 E-value=9.8e-10 Score=102.08 Aligned_cols=177 Identities=10% Similarity=0.078 Sum_probs=86.9
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcch-----HHHH-HHHH-HHhhcCccchhhhhhcCCchhhhccccE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD-----RTIQ-KYEK-EAKDKSRESWYMAYIMDTNEEERIKGKT 110 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~-----~~~~-~~~~-~~~~~g~~s~~~~~~~d~~~~e~~~g~t 110 (476)
.....+.+++|+++|+.|+|||||+++|+...+.... .... .... .....|... ..+.+...--.....+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~---~~l~~gcic~~~~~~~ 91 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPA---IQINTGKECHLDAHMV 91 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcE---EEEcCCCcccCChHHH
Confidence 3344557899999999999999999999876432100 0000 0000 000011000 0000000000000000
Q ss_pred EeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 111 VEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 111 i~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
.+ ........+..+.|++|.|.-... .......+..+.|+|+..+.. ... ......+.+ .++++
T Consensus 92 ~~-~l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~---------~~~--~~~~~~~~a-~iiv~ 155 (207)
T TIGR00073 92 AH-ALEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD---------KPL--KYPGMFKEA-DLIVI 155 (207)
T ss_pred HH-HHHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc---------hhh--hhHhHHhhC-CEEEE
Confidence 00 000011124578899999931110 111124566778999886531 111 112234555 57899
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
||+|+.. .......+..+.++. .+ ...+++++||++|.|+.++
T Consensus 156 NK~Dl~~--~~~~~~~~~~~~l~~----~~----~~~~i~~~Sa~~g~gv~~l 198 (207)
T TIGR00073 156 NKADLAE--AVGFDVEKMKADAKK----IN----PEAEIILMSLKTGEGLDEW 198 (207)
T ss_pred EHHHccc--cchhhHHHHHHHHHH----hC----CCCCEEEEECCCCCCHHHH
Confidence 9999943 222223344444333 22 2468999999999999884
No 311
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.6e-09 Score=104.03 Aligned_cols=145 Identities=24% Similarity=0.264 Sum_probs=104.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
-+...++++|++|.|||||+..|+... .+ .+-.+...-+|+-. ...
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-----------tk-----------------~ti~~i~GPiTvvs------gK~ 112 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-----------TK-----------------QTIDEIRGPITVVS------GKT 112 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-----------HH-----------------hhhhccCCceEEee------cce
Confidence 456788899999999999999985321 01 00111122244333 356
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
++++|+.+| +-+..|+..+..||.++|+||++-|. ...|-|.|.++...|.|+++-|+|..|+.. +.
T Consensus 113 RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGf-------EMETmEFLnil~~HGmPrvlgV~ThlDlfk---~~ 179 (1077)
T COG5192 113 RRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGF-------EMETMEFLNILISHGMPRVLGVVTHLDLFK---NP 179 (1077)
T ss_pred eEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCc-------eehHHHHHHHHhhcCCCceEEEEeeccccc---Ch
Confidence 899999999 44778999999999999999999884 278999999999999999999999999954 34
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 237 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g 237 (476)
..+..++..+.-.+..-=| ..+.++.+|+...
T Consensus 180 stLr~~KKrlkhRfWtEiy---qGaKlFylsgV~n 211 (1077)
T COG5192 180 STLRSIKKRLKHRFWTEIY---QGAKLFYLSGVEN 211 (1077)
T ss_pred HHHHHHHHHHhhhHHHHHc---CCceEEEeccccc
Confidence 5666777666544432222 2567888887543
No 312
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.93 E-value=3.7e-09 Score=104.77 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=80.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccE-EeeeeEEEEe
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT-VEVGRAHFET 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~t-i~~~~~~~~~ 120 (476)
....++|||+|.+|+|||||+|+|... |.-+++ .-..|++ .......+..
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl-~~~d~~----------------------------aA~tGv~etT~~~~~Y~~ 82 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGL-GHEDEG----------------------------AAPTGVVETTMEPTPYPH 82 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT---TTSTT----------------------------S--SSSHSCCTS-EEEE-
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCC-CCCCcC----------------------------cCCCCCCcCCCCCeeCCC
Confidence 345689999999999999999999421 111111 0111221 0111122333
Q ss_pred CC-eEEEEEeCCCC-------cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 121 ET-TRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~-~~~~liDtPGh-------~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
.. -.++|||.||. .+|+..+ .+..-|+.|+|.+..-. ......+..++.+|.+ +.+|-||
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEec
Confidence 33 46999999994 2334333 46778987666543321 2333445666778887 9999999
Q ss_pred cCCC--------CcCccHHH-HHHHHHHHHHHHHhccCCcCCCeeEEeeeccc
Q 011837 193 MDDH--------TVNWSKER-YDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 193 ~Dl~--------~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~ 236 (476)
+|.. +..+++++ ++++.+...+-|+..|.. ..+++-+|++.
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 9951 11234333 577777777778877765 56899999865
No 313
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=8.5e-10 Score=93.48 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||+|+++|...+..-.+.|-+.+|+.|-+..- .|- .++..+..++. ..-|.+|++.||+|+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eq---SFL---nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-- 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQ---SFL---NVRNWLSQLQTHAYCENPDIVLCGNKADLED-- 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchH---HHH---HHHHHHHHHHHhhccCCCCEEEEcCccchhh--
Confidence 34789999999999998888889999999999977531 121 33333333333 24567999999999932
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+-.-..++...+..++| +|++.+||-+|.|+++..+
T Consensus 139 ----~R~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ----QRVVSEDQAAALADKYG------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred ----hhhhhHHHHHHHHHHhC------CCeeeeccccCcCHHHHHH
Confidence 11112234444555655 5799999999999988543
No 314
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.5e-08 Score=86.86 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=101.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.-++.++|--|||||||+..|- .. + ++ ..--|.......+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLK--dD----r----------------------l~------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLK--DD----R----------------------LG------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHc--cc----c----------------------cc------ccCCCcCCChHHheecC
Confidence 345688999999999999998871 11 1 00 11133444444566788
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..|+-+|..||..-..-...++..+|+++++|||.+-.- -...++++..+.. ..+| +++..||+|.+.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er------~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER------FAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH------hHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 999999999998888777888889999999999876432 1456667665544 3688 7889999999776
Q ss_pred CccHHHHHHHHHHHHHHHHhccC-C----cCCCeeEEeeeccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGY-N----VKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~-~----~~~~~~~ipvSa~~g~~i~~ 242 (476)
. +++++..... +.......+. . ......++.+|...+.|..+
T Consensus 137 ~-se~~l~~~l~-l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e 183 (193)
T KOG0077|consen 137 A-SEDELRFHLG-LSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGE 183 (193)
T ss_pred c-cHHHHHHHHH-HHHHhcccccccccCCCCCeEEEEEEEEEccCccce
Confidence 4 5544433332 2222211110 0 01134566777777766544
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.89 E-value=2.9e-08 Score=98.13 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=81.1
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHh--CCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccc---cEE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLS--GQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTV 111 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~--g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---~ti 111 (476)
+....+...+.|+++|++++|||||+++|.... ..+.+... ++ ...|..+. ...| .|.
T Consensus 9 DIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~----k~------------Ra~DELpq-s~~GktItTT 71 (492)
T TIGR02836 9 DIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYD----KE------------RAQDELPQ-SAAGKTIMTT 71 (492)
T ss_pred HHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhH----Hh------------HHHhccCc-CCCCCCcccC
Confidence 344566778999999999999999999996431 12221110 00 01111111 1244 444
Q ss_pred eeee---EEEEe-----CCeEEEEEeCCCCc--------CcH-----------------HH----Hhhhcc-ccCEEEEE
Q 011837 112 EVGR---AHFET-----ETTRFTILDAPGHK--------SYV-----------------PN----MISGAS-QADIGVLV 153 (476)
Q Consensus 112 ~~~~---~~~~~-----~~~~~~liDtPGh~--------~f~-----------------~~----~~~~~~-~aD~avlV 153 (476)
+..+ ..++. -..++.|+||+|.. +-- .. +...+. .+|.+|+|
T Consensus 72 ePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivV 151 (492)
T TIGR02836 72 EPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVV 151 (492)
T ss_pred CCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEE
Confidence 4444 22222 13679999999932 111 11 223345 89999999
Q ss_pred E-ECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 154 I-SARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 154 V-da~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
. |++-+..+..- ....-.+.+..++..++| +|+++||.|-
T Consensus 152 tTDgsi~dI~Re~-y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 152 TTDGTITDIPRED-YVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred EcCCCcccccccc-chHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 9 77522211000 012345567888999999 9999999993
No 316
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.89 E-value=8.7e-09 Score=78.95 Aligned_cols=68 Identities=34% Similarity=0.486 Sum_probs=61.5
Q ss_pred CeEEEEEEEEeeEecCCEEEEecC--Cce---EEEEEEEECCeeeeecCCCCeEEEEEeccCccC-ceeeeEEe
Q 011837 287 GTVVMGKVESGSVREGDSLLVMPN--KAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 354 (476)
Q Consensus 287 G~v~~g~v~sG~l~~gd~v~~~p~--~~~---~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 354 (476)
|++++|||++|+|++||+|++.|. +.. .+|++|+.++....++.+|+.+++.+......+ +++||+|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 688999999999999999999773 244 899999999999999999999999999888888 89999986
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.89 E-value=1.8e-08 Score=99.00 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=59.9
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
..++.+.|+||||.. ......+..+|.++++.+...+. ..... . -..++++ .++++||+|+...+
T Consensus 124 ~~g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~~~~---------el~~~-~-~~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 124 AAGYDVIIVETVGVG---QSEVDIANMADTFVVVTIPGTGD---------DLQGI-K-AGLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred hCCCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCCccH---------HHHHH-H-HHHhhhc-cEEEEEcccccchh
Confidence 357889999999954 22233466789998886554331 11111 1 1124667 57899999995321
Q ss_pred ccHHHHHHHHHHH----HHHHHh-ccCCcCCCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKM----TPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l----~~~l~~-~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
........+ ..+... .++ ..+++++||++|.|+.++.+
T Consensus 189 ----~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 ----NVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred ----HHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 111112121 111111 122 23699999999999998643
No 318
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.9e-09 Score=88.21 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=98.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
...++.++|-.|+||+|++-+| +.|.++. .--|+..+...+.+.+-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 5578999999999999998776 3332221 11233344445666888
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~--l~i~~iIvviNK~Dl~~~~~ 200 (476)
++.++|..|+....+-+.......|.+|+|||..+-.- .+... |....+.. +.-..++|+.||+|...+
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr------is~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR------ISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh------hhhhHHHHHHHhccHhhcCceEEEEeccccchhh--
Confidence 99999999999999999999999999999999876431 01222 22222222 222348899999998433
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
....++...|.-...+ +..+.++..||.+|+|+++.
T Consensus 135 ------~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 135 ------LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred ------hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHH
Confidence 2222222222111111 22478999999999999984
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.86 E-value=6e-10 Score=106.83 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=88.4
Q ss_pred ccccccccCccceeEEEEEecCCCChHHHHHHHHHHhC-CcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhc---cc
Q 011837 33 ESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSG-QVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI---KG 108 (476)
Q Consensus 33 ~~~~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g-~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~---~g 108 (476)
..+.+.....+....|.++|.+|||||||+++|+.... .....-+ .|. ....-|... -+. .+
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI---------~gD----~~t~~Da~r-I~~~g~pv 157 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI---------EGD----QQTVNDAAR-IRATGTPA 157 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE---------CCC----cCcHHHHHH-HHhcCCcE
Confidence 33445555667889999999999999999999875431 1000000 000 000000000 001 11
Q ss_pred cEEeeeeE-------------EEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH
Q 011837 109 KTVEVGRA-------------HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 175 (476)
Q Consensus 109 ~ti~~~~~-------------~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l 175 (476)
+.+..+.. .+......+.||++-|.-..-... - -..+.-+.|++..+|. .+...+-
T Consensus 158 vqi~tG~~Chl~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~f--d-lge~~~v~vlsV~eg~--------dkplKyp 226 (290)
T PRK10463 158 IQVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASF--D-LGEKHKVAVLSVTEGE--------DKPLKYP 226 (290)
T ss_pred EEecCCCCCcCcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCcc--c-hhhceeEEEEECcccc--------ccchhcc
Confidence 12211111 122234567788888841110000 0 0124456778877763 1111111
Q ss_pred HHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 176 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 176 ~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+... -++++||+|+ .++....++.+.+.++.+. +..+++++|+++|+|++++
T Consensus 227 ---~~f~~A-DIVVLNKiDL--l~~~~~dle~~~~~lr~ln--------p~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 227 ---HMFAAA-SLMLLNKVDL--LPYLNFDVEKCIACAREVN--------PEIEIILISATSGEGMDQW 280 (290)
T ss_pred ---chhhcC-cEEEEEhHHc--CcccHHHHHHHHHHHHhhC--------CCCcEEEEECCCCCCHHHH
Confidence 122344 3579999999 4433344555555544431 3568999999999999984
No 320
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=84.72 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=98.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|.++|--+|||||++.+|-. - + -...-+..|..+ ..+++.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~s--E--D--------------------------~~hltpT~GFn~----k~v~~~ 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKS--E--D--------------------------PRHLTPTNGFNT----KKVEYD 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHcc--C--C--------------------------hhhccccCCcce----EEEeec
Confidence 35679999999999999999998821 0 0 001112233322 334455
Q ss_pred C-eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCC
Q 011837 122 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~-~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~ 196 (476)
+ .++++||..|++...+-+..+....|..|+|||+++.-+ |+ .+.+|+..+. ...+| +.+..||-|+.
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~ELleeeKl~~vp-vlIfankQdll 132 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVELLEEEKLAEVP-VLIFANKQDLL 132 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHHHhhhhhhhccc-eeehhhhhHHH
Confidence 4 889999999999998888888999999999999876543 22 4444543333 23577 77789999985
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. ..+++...+. -.++. ...+.+-.+|+++++|+...
T Consensus 133 taa----~~eeia~kln----l~~lr-dRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 133 TAA----KVEEIALKLN----LAGLR-DRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred hhc----chHHHHHhcc----hhhhh-hceEEeeeCccccccCccCc
Confidence 432 1222222111 11111 12456778999999998874
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.82 E-value=4.9e-08 Score=91.00 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=84.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|.++|..|+||||++|.||...-. . ........|..........+++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f---------------------~--------~~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVF---------------------K--------SGSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-S---------------------S----------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccce---------------------e--------eccccCCcccccceeeeeecceEE
Confidence 58999999999999999999632210 0 000112344444445557889999
Q ss_pred EEEeCCCCcC-------cHHHHhhh----ccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcC---CceEEEEE
Q 011837 126 TILDAPGHKS-------YVPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLLLVV 190 (476)
Q Consensus 126 ~liDtPGh~~-------f~~~~~~~----~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~---i~~iIvvi 190 (476)
++|||||..+ ...++..+ ....+++|||+.... .. ...+..+..+. .+| .+++||+.
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t-------~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FT-------EEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--S-------HHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-ch-------HHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 9999999432 23333332 346899999999883 21 23444444333 344 35788999
Q ss_pred EccCCCCcCccHHHHHHHH-HHHHHHHHhccCCcCCCeeEEeeecc
Q 011837 191 NKMDDHTVNWSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~ipvSa~ 235 (476)
|..|....+..++.++.-. ..++.+++.++- +++-++..
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~------R~~~f~n~ 163 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGG------RYHVFNNK 163 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT------CEEECCTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCC------EEEEEecc
Confidence 9999754432122222122 347777777753 46655554
No 322
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.82 E-value=7.8e-08 Score=97.54 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCc----C---cHHHHhhhccccCEEEEEEECC
Q 011837 123 TRFTILDAPGHK----S---YVPNMISGASQADIGVLVISAR 157 (476)
Q Consensus 123 ~~~~liDtPGh~----~---f~~~~~~~~~~aD~avlVVda~ 157 (476)
..+.|+|+||.. + .....+..++.+|++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 568999999942 2 3335566688999999999996
No 323
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=6.5e-08 Score=93.57 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=69.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|.+|+|||||+|+|+...-.. ..++ .+.+...........
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~------------------------vs~f------~s~t~~~~~~~~~~~ 84 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT------------------------VSAF------QSEGLRPMMVSRTRA 84 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccc------------------------ccCC------CCcceeEEEEEEEEC
Confidence 4567899999999999999999996321110 0011 011111112223457
Q ss_pred CeEEEEEeCCCCcCcH--H-HHhhhc------cccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC---CceEEE
Q 011837 122 TTRFTILDAPGHKSYV--P-NMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~--~-~~~~~~------~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~---i~~iIv 188 (476)
+..+++|||||..+.. . .....+ ..+|++++|...+..-+ ....+..+..+.. +| -.++||
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~iw~~~IV 158 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDIWRKSLV 158 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhhhccEEE
Confidence 8999999999976541 1 111111 25899999965443211 0122333333332 23 245899
Q ss_pred EEEccCCCC
Q 011837 189 VVNKMDDHT 197 (476)
Q Consensus 189 viNK~Dl~~ 197 (476)
++|+.|..+
T Consensus 159 VfTh~d~~~ 167 (313)
T TIGR00991 159 VLTHAQFSP 167 (313)
T ss_pred EEECCccCC
Confidence 999999753
No 324
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-08 Score=92.37 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=109.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-e
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 123 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 123 (476)
..+|.++|..|||||++=+......-+ ..-+..|-|||+...+...-+ -
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a------------------------------~D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA------------------------------RDTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh------------------------------hhhhccCCcceeeehhhhhhhhh
Confidence 468999999999999997755321110 112356788888777765544 7
Q ss_pred EEEEEeCCCCcCcHHHHhhh-----ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEEccCCCC
Q 011837 124 RFTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~-----~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-~i~~iIvviNK~Dl~~ 197 (476)
.+++||+.|++.|+++..+. .+..++.+.|.|+....+++++. ..+..+..+... -.-++.+.+.|||+..
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 78999999999999988774 56899999999999988876664 344444444333 2334778999999987
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 237 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g 237 (476)
.+..+..|++..+.+..+-+.++ ...+|+|-+..
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~------~~~f~TsiwDe 164 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE------CKCFPTSIWDE 164 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc------ccccccchhhH
Confidence 77777777777776665544332 45778876543
No 325
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.81 E-value=1.5e-08 Score=95.43 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=47.5
Q ss_pred eEEEEEeCCCCcC--------c----H-HHHhhhcc-ccCEEEEEEECCCCccccccCCCCch-HHHHHHHHHcCCceEE
Q 011837 123 TRFTILDAPGHKS--------Y----V-PNMISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLL 187 (476)
Q Consensus 123 ~~~~liDtPGh~~--------f----~-~~~~~~~~-~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~l~i~~iI 187 (476)
..++|+||||... . + ..+..++. ..+.+++|+||+.+.. .+. .+.+..+...+.+ .|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-EE
Confidence 6799999999642 1 1 22334555 4569999999988763 333 4666677777887 88
Q ss_pred EEEEccCCCC
Q 011837 188 LVVNKMDDHT 197 (476)
Q Consensus 188 vviNK~Dl~~ 197 (476)
+|+||+|...
T Consensus 197 ~ViTK~D~~~ 206 (240)
T smart00053 197 GVITKLDLMD 206 (240)
T ss_pred EEEECCCCCC
Confidence 9999999953
No 326
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.80 E-value=5.1e-08 Score=75.50 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=67.8
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEec--CCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceee
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p--~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
+++.+.+++ +..|.++.|+|.+|+|++||.+.+.| .....+|++|+.++.+++.+.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 356788877 35789999999999999999999999 7778899999999999999999999999876433 78999
Q ss_pred eEEe
Q 011837 351 FVLS 354 (476)
Q Consensus 351 ~vl~ 354 (476)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9885
No 327
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.80 E-value=1e-08 Score=91.68 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
....+.|+||||-.+. ...+...+..+|++|+|++++.... .+..+-+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3466999999995332 2334455689999999999998753 2333333434444455589999995
No 328
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.80 E-value=3.8e-08 Score=90.64 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceE--EEEEEccCCCCcC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL--LLVVNKMDDHTVN 199 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~i--IvviNK~Dl~~~~ 199 (476)
+..+.+|++.|-. ...... -..+|.+|.|+|+.++.. ...+. ..++. + ++++||+|+.+
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~--------~~~~~-----~~qi~-~ad~~~~~k~d~~~-- 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK--------IPRKG-----GPGIT-RSDLLVINKIDLAP-- 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh--------hhhhh-----HhHhh-hccEEEEEhhhccc--
Confidence 4567899999921 111111 123688999999998641 11111 11222 3 57999999943
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
......+.+.+.++.+ + ...+++++||++|+|++++
T Consensus 152 ~~~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el 187 (199)
T TIGR00101 152 MVGADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTV 187 (199)
T ss_pred cccccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHH
Confidence 1123344444444443 2 2468999999999999985
No 329
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.78 E-value=1.1e-09 Score=90.01 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCC-CccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~-g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~ 197 (476)
+.++.+|||.|+++|..-+....+.||+.+|+.|... ..|+ ..+..+...... .+. +.++.||+|++.
T Consensus 46 kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfd-------n~~~wlsei~ey~k~~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 46 KVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFD-------NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAH 117 (192)
T ss_pred EEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHH-------HHHHHHHHHHHHHHhhHh-Hhhhccccccch
Confidence 4568999999999999999999999999999999654 3332 233333333333 243 567999999942
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. +. --.++=+.+.+.+ ++||+.+||++|.|++-.
T Consensus 118 e-----r~-v~~ddg~kla~~y------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 118 E-----RA-VKRDDGEKLAEAY------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred h-----hc-cccchHHHHHHHH------CCCceeccccccccHhHH
Confidence 1 11 0011222333343 468999999999999864
No 330
>PTZ00258 GTP-binding protein; Provisional
Probab=98.78 E-value=9.7e-08 Score=95.85 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=56.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+++|.+|+|||||+++|....- ......+.|++.....+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-------------------------------~v~n~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-------------------------------PAENFPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-------------------------------cccCCCCCcccceEEEEeccc
Confidence 3457899999999999999999932111 01112445555444444333
Q ss_pred ----------------CeEEEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECC
Q 011837 122 ----------------TTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISAR 157 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~ 157 (476)
..++.|+||||-. ......+..++.+|++++|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2358999999932 13345566678999999999984
No 331
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.75 E-value=3.8e-08 Score=87.56 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccC-EEEEEEECCCCccccccCCCCchHH-HHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD-~avlVVda~~g~~e~~~~~~~qt~e-~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
..+.||...| ..... ......| .-|+|||.++|.- --+. +=.+.+ . =++||||.|+ +.+
T Consensus 97 ~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~--------~P~K~gP~i~~----a-DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGED--------IPRKGGPGIFK----A-DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCC--------CcccCCCceeE----e-eEEEEehHHh--HHH
Confidence 4688888888 22211 1112445 8999999999862 1111 100000 1 1579999999 443
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
-...++.+.+..++. +++.||+.+|+++|+|++++
T Consensus 158 v~~dlevm~~da~~~--------np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGADLEVMARDAKEV--------NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCccHHHHHHHHHHh--------CCCCCEEEEeCCCCcCHHHH
Confidence 333344444444332 35789999999999999884
No 332
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.72 E-value=2.1e-07 Score=71.11 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=58.7
Q ss_pred CCeEEEEEEE--EccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceee
Q 011837 273 GPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 273 ~p~~~~v~~~--~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
.|.++.|... |..++ ++.|+|..|+|++|..+ .+....+|+||+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 4566666654 57777 78889999999999999 45567899999999999999999999999999855 79999
Q ss_pred eEE
Q 011837 351 FVL 353 (476)
Q Consensus 351 ~vl 353 (476)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 987
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.72 E-value=1.8e-07 Score=87.42 Aligned_cols=169 Identities=20% Similarity=0.158 Sum_probs=87.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcC-----cc-ch-hhhhhcCCchhh---hccccEEe
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS-----RE-SW-YMAYIMDTNEEE---RIKGKTVE 112 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g-----~~-s~-~~~~~~d~~~~e---~~~g~ti~ 112 (476)
.+...|+|.|++|+|||||++.|....- .+...-+ .+ .+ ..+.+-|...-. ...|+-|-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~-----------~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELR-----------ERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHH-----------HTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHh-----------hcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 4568999999999999999999853221 0000000 01 11 223344433322 23455444
Q ss_pred eeeEE----------------EEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH
Q 011837 113 VGRAH----------------FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 176 (476)
Q Consensus 113 ~~~~~----------------~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~ 176 (476)
..... ++..++.+.|+.|-|--. .-+.-...+|..++|+-+..|.- -|...
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~-------iQ~~K--- 162 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDE-------IQAIK--- 162 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCC-------CCTB----
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccH-------HHHHh---
Confidence 32221 233578899999998321 11223568999999999888752 23211
Q ss_pred HHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc-CCCeeEEeeeccccccccccc
Q 011837 177 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 177 ~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+-.+.+.. |+||||+|++.+ +....+++..+....-.. .-..|++.+||.+|.|++++.
T Consensus 163 -aGimEiaD-i~vVNKaD~~gA-------~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~ 222 (266)
T PF03308_consen 163 -AGIMEIAD-IFVVNKADRPGA-------DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELW 222 (266)
T ss_dssp -TTHHHH-S-EEEEE--SHHHH-------HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHH
T ss_pred -hhhhhhcc-EEEEeCCChHHH-------HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHH
Confidence 11122333 479999997433 244445555444221100 013599999999999999853
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=95.61 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=95.9
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
.+......+...|+++|-.|||||||+++|. ......+..++ -|.|...
T Consensus 169 ~r~gr~~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLF------------------------------ATLDpT~ 217 (410)
T KOG0410|consen 169 RRVGREGESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLF------------------------------ATLDPTL 217 (410)
T ss_pred hhhccccCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhh------------------------------eeccchh
Confidence 3344455667899999999999999999995 33222222211 2333332
Q ss_pred EEEEe-CCeEEEEEeCCCCcCcHHHH--------hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc--
Q 011837 116 AHFET-ETTRFTILDAPGHKSYVPNM--------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT-- 184 (476)
Q Consensus 116 ~~~~~-~~~~~~liDtPGh~~f~~~~--------~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~-- 184 (476)
..... ++..+.|.||-|.-.-++.. +.-...+|.++.|+|.++...| .|-...+..++.+|+|
T Consensus 218 h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~ 291 (410)
T KOG0410|consen 218 HSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSE 291 (410)
T ss_pred hhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcH
Confidence 22222 46778999999954333332 2224579999999999987653 4566677788888886
Q ss_pred ----eEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 185 ----KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 ----~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+|=|=||+|..... .+ + .++ -.+++|+++|+|+.++
T Consensus 292 pkl~~mieVdnkiD~e~~~-~e-------~-------------E~n-~~v~isaltgdgl~el 332 (410)
T KOG0410|consen 292 PKLQNMIEVDNKIDYEEDE-VE-------E-------------EKN-LDVGISALTGDGLEEL 332 (410)
T ss_pred HHHhHHHhhcccccccccc-Cc-------c-------------ccC-CccccccccCccHHHH
Confidence 345577888863221 10 0 011 2689999999999884
No 335
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.68 E-value=3.2e-07 Score=88.84 Aligned_cols=143 Identities=17% Similarity=0.254 Sum_probs=81.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..||.++|..|.|||||++.|+.......... .+.......+...+.........++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47999999999999999999864221111000 0000111223344444444444443
Q ss_pred eEEEEEeCCCCcCcHHH---------------------Hhhh----c--cccCEEEEEEECCCCccccccCCCCchHHHH
Q 011837 123 TRFTILDAPGHKSYVPN---------------------MISG----A--SQADIGVLVISARKGEFETGFEKGGQTREHV 175 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~---------------------~~~~----~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l 175 (476)
..++++||||.-+.+.+ -... . ...|++|+.|+++.. +-....+
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~---------~L~~~Di 133 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH---------GLKPLDI 133 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS---------SS-HHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc---------cchHHHH
Confidence 46899999995433211 0000 1 247999999998642 1233445
Q ss_pred HHHHHcC--CceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 176 MLAKTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 176 ~~~~~l~--i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
..++.+. ++ +|-||.|.|.. ..+.+...++.+..-++..+++
T Consensus 134 ~~mk~Ls~~vN-vIPvIaKaD~l----t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 134 EFMKRLSKRVN-VIPVIAKADTL----TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHHHTTTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHhccccc-EEeEEeccccc----CHHHHHHHHHHHHHHHHHcCce
Confidence 5555553 54 88999999983 4677888888888888876553
No 336
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=87.53 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=101.1
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
+.......+.++++|..|.|||+|++.++..... ...++ ...|.|......
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~-------------~~t~k---------------~K~g~Tq~in~f- 179 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNI-------------ADTSK---------------SKNGKTQAINHF- 179 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhh-------------hhhcC---------------CCCccceeeeee-
Confidence 3333455689999999999999999988542211 11110 034555544333
Q ss_pred EEeCCeEEEEEeCCC----------CcCcHHHHhhhc---cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc
Q 011837 118 FETETTRFTILDAPG----------HKSYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 118 ~~~~~~~~~liDtPG----------h~~f~~~~~~~~---~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~ 184 (476)
.-+..+.++|.|| -+++.+.+..++ ..-=-+.|++|+..++ ++.....+..+...++|
T Consensus 180 --~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP 250 (320)
T KOG2486|consen 180 --HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP 250 (320)
T ss_pred --eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC
Confidence 3467899999999 123333333332 3445678889999886 36778889999999999
Q ss_pred eEEEEEEccCCCCcC--ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 185 KLLLVVNKMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 185 ~iIvviNK~Dl~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.+|.||||....- ........++..+..+.... | ....|++.+|+.++.|++.+
T Consensus 251 -~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f--~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 251 -MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-F--LVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred -eEEeeehhhhhhhccccccCccccceeehhhccccc-e--eccCCceeeecccccCceee
Confidence 88999999973110 00001111222222222211 1 12457888999999999886
No 337
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.56 E-value=8.1e-07 Score=81.55 Aligned_cols=88 Identities=24% Similarity=0.251 Sum_probs=62.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
+...-+|+++|-+.+|||||+..+........ ..--.|.......++++
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA-------------------------------~yeFTTLtcIpGvi~y~ 107 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAA-------------------------------SYEFTTLTCIPGVIHYN 107 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhh-------------------------------ceeeeEEEeecceEEec
Confidence 34567999999999999999998732111000 00113444455567889
Q ss_pred CeEEEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCCCc
Q 011837 122 TTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 122 ~~~~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~g~ 160 (476)
+..+.++|.||-. ---++.++.++.||.++.|+||+.+.
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 9999999999932 22455667778999999999999864
No 338
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.55 E-value=5.9e-07 Score=70.41 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=59.9
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceee
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
..|.+++ +..|.++++||.+|+|++||.|.+...+...+|..|... ..++++|.|||+++ +.++ .+++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~--i~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGV--ITGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEE--EECC--CCcccC
Confidence 3455554 346999999999999999999998777766778887654 57899999999999 4666 448899
Q ss_pred eEEec
Q 011837 351 FVLSS 355 (476)
Q Consensus 351 ~vl~~ 355 (476)
|+|+.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99873
No 339
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.54 E-value=5.6e-07 Score=81.17 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=92.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-C
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-T 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-~ 122 (476)
..++++++|...+|||.|+-.. .++.. +++...-+. +--...+..+ +
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~--t~~~f-----------------------------p~~yvPTVF-dnys~~v~V~dg 50 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISY--TTNAF-----------------------------PEEYVPTVF-DNYSANVTVDDG 50 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEe--ccCcC-----------------------------cccccCeEE-ccceEEEEecCC
Confidence 4589999999999999998533 43322 222222111 1222223332 3
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCCCCcC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||.|+++|-+-..-....+|+.|++.+...... |+. -..++.=.+.+- -++| +|+|.+|.||- +
T Consensus 51 ~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~n-v~~kW~pEi~~~cp~vp-iiLVGtk~DLr--~ 123 (198)
T KOG0393|consen 51 KPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FEN-VKSKWIPEIKHHCPNVP-IILVGTKADLR--D 123 (198)
T ss_pred CEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HHH-HHhhhhHHHHhhCCCCC-EEEEeehHHhh--h
Confidence 457899999999997744446678999999888655321 110 111221112222 3687 89999999993 1
Q ss_pred ccHHHHHHHH---------HHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~---------~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+....+++. ++-..+.+++|. ..++.+||++..|+.+.+
T Consensus 124 -d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 124 -DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEVF 171 (198)
T ss_pred -CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHHH
Confidence 111222221 233344455543 479999999999988863
No 340
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.54 E-value=1.5e-08 Score=87.69 Aligned_cols=154 Identities=21% Similarity=0.172 Sum_probs=95.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++++|+|.-++||||++.+.. .|........ + .-.|+. | +.+ .+..+.
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkdykk------------t----Igvdfl--e--rqi-------~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDYKK------------T----IGVDFL--E--RQI-------KVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--cccccccccc------------c----cchhhh--h--HHH-------HhhHHH
Confidence 345899999999999999999763 3433322100 0 001111 1 111 112234
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH--HHHcCCceEEEEEEccCCCCcCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~--~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.++.+|||.|++.|-.-+....+.|.+.+||.+.++-.. |+ -+.+.-.. .....|| .++|-||+|+ .+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S---Fe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--ved 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS---FE---ATLEWYNKVQKETERIP-TVFVQNKIDL--VED 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHH---HH---HHHHHHHHHHHHhccCC-eEEeeccchh--hHh
Confidence 567899999999998888888899999999999876321 22 22222211 2224688 6789999999 432
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+. --..+++.+.+.+ ..+++-+|++...|+..++
T Consensus 140 s~----~~~~evE~lak~l------~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 140 SQ----MDKGEVEGLAKKL------HKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hh----cchHHHHHHHHHh------hhhhhhhhhhhhhhhHHHH
Confidence 22 1223344444443 2468899999999988753
No 341
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.53 E-value=5.6e-07 Score=70.82 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccC
Q 011837 273 GPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 346 (476)
Q Consensus 273 ~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~ 346 (476)
.||.+.|..+. +..|.++++||.+|+|+.||.|.... +...++.+|... ..++++|.|||+++ +.+++ +
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~--~ 76 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAI--LTGLK--G 76 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEE--EECCC--C
Confidence 57888888876 45699999999999999999998754 445677787664 56899999999998 56653 4
Q ss_pred ceeeeEEe
Q 011837 347 ILSGFVLS 354 (476)
Q Consensus 347 i~~G~vl~ 354 (476)
+..||+|+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 78898875
No 342
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.53 E-value=5.3e-07 Score=85.43 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=60.9
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
-.++.+.|+.|-|--.-- ..-...+|..++|.-+..|.- -|. ...-.+.+-- |+||||+|+..+
T Consensus 141 AaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~-------~Q~----iK~GimEiaD-i~vINKaD~~~A- 204 (323)
T COG1703 141 AAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDD-------LQG----IKAGIMEIAD-IIVINKADRKGA- 204 (323)
T ss_pred hcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcH-------HHH----HHhhhhhhhh-eeeEeccChhhH-
Confidence 347888999998832111 112356899999987766641 122 2223344443 579999998443
Q ss_pred ccHHHHHHHHHHHHHH---HHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~---l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..+.++...+... ....+|. .|++-+||.+|+|+.++.
T Consensus 205 --~~a~r~l~~al~~~~~~~~~~~W~----ppv~~t~A~~g~Gi~~L~ 246 (323)
T COG1703 205 --EKAARELRSALDLLREVWRENGWR----PPVVTTSALEGEGIDELW 246 (323)
T ss_pred --HHHHHHHHHHHHhhcccccccCCC----CceeEeeeccCCCHHHHH
Confidence 22333333333222 2233443 589999999999999864
No 343
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.52 E-value=8.8e-07 Score=69.41 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=60.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceee
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
..|.+++ +..|.++++||++|+|++||.|.+...+...+|.+|... ..+++++.|||++.+ .|++. ++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~~--~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLKD--TATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCCC--CccC
Confidence 3455554 346999999999999999999998887777888888664 578999999999995 66644 8899
Q ss_pred eEEe
Q 011837 351 FVLS 354 (476)
Q Consensus 351 ~vl~ 354 (476)
|+|+
T Consensus 79 dtl~ 82 (83)
T cd04088 79 DTLC 82 (83)
T ss_pred CEee
Confidence 9986
No 344
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.48 E-value=9.4e-07 Score=75.00 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=103.8
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhh--ccccEEeeeeEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER--IKGKTVEVGRAHF 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~--~~g~ti~~~~~~~ 118 (476)
...-.++|+++|....|||||+-..+. +...+|. ..|+..--...+.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~-------------------------------~~~de~~~q~~GvN~mdkt~~i 64 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQ-------------------------------NEYDEEYTQTLGVNFMDKTVSI 64 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhc-------------------------------chhHHHHHHHhCccceeeEEEe
Confidence 344568999999999999999854321 1111121 2222222222223
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC---CceEEEEEEccCC
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDD 195 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~---i~~iIvviNK~Dl 195 (476)
......|.+||..|+++|..+.--+...+-+++++.|-+.... ....++..+.++.++ +| |++.+|.|+
T Consensus 65 ~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------LnSi~~WY~QAr~~NktAiP--ilvGTKyD~ 136 (205)
T KOG1673|consen 65 RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------LNSIKEWYRQARGLNKTAIP--ILVGTKYDL 136 (205)
T ss_pred cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------HHHHHHHHHHHhccCCccce--EEeccchHh
Confidence 3334568899999999998776666778888999999887543 134455556666665 55 579999997
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. .+...+.-+.+..+-+.+.+.. +.+.+.+|+-+..|+.+.+
T Consensus 137 f-i~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 137 F-IDLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIF 178 (205)
T ss_pred h-hcCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHH
Confidence 4 3344444455666666666655 4578999999999998753
No 345
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.47 E-value=1.5e-06 Score=91.10 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=68.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|.+|+|||||+|.|+...-.. .. ....+ |...........+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~-------------------------vs----s~~~~-TTr~~ei~~~idG~~ 167 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFS-------------------------TD----AFGMG-TTSVQEIEGLVQGVK 167 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccc-------------------------cc----CCCCC-ceEEEEEEEEECCce
Confidence 4799999999999999999996422110 00 01122 222333344567889
Q ss_pred EEEEeCCCCcCc------HHHHhh----hcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcC---CceEEE
Q 011837 125 FTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLLL 188 (476)
Q Consensus 125 ~~liDtPGh~~f------~~~~~~----~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~---i~~iIv 188 (476)
+.+|||||..+. ...++. .+. .+|++|+|...+.... .......+..+. .+| .+++||
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCEEE
Confidence 999999996643 122222 223 4798888876543211 011122222222 233 457899
Q ss_pred EEEccCCCC
Q 011837 189 VVNKMDDHT 197 (476)
Q Consensus 189 viNK~Dl~~ 197 (476)
|.|..|..+
T Consensus 242 VFThgD~lp 250 (763)
T TIGR00993 242 TLTHAASAP 250 (763)
T ss_pred EEeCCccCC
Confidence 999999865
No 346
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.46 E-value=1.9e-06 Score=67.95 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=60.4
Q ss_pred EEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEecc-CccCcee
Q 011837 276 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILS 349 (476)
Q Consensus 276 ~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~ 349 (476)
.+.|..+. +..|.++++||++|+|+.||.+++...+...+|..|... ..+++++.|||++++. .++ +..+++.
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDARV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcccc
Confidence 45566665 456999999999999999999998776666777777654 4688999999999963 222 2245889
Q ss_pred eeEEec
Q 011837 350 GFVLSS 355 (476)
Q Consensus 350 G~vl~~ 355 (476)
||+|+.
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 999873
No 347
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.46 E-value=2e-06 Score=67.91 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=59.2
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCcc
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~ 345 (476)
|++.|.++. +..|.++++||.+|+|++||+|++...+ ...+|.+|... ..+++++.|||+++ +.+++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl~-- 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGIE-- 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECCC--
Confidence 456777665 4579999999999999999999876553 24677787543 47899999999996 56663
Q ss_pred CceeeeEEe
Q 011837 346 DILSGFVLS 354 (476)
Q Consensus 346 ~i~~G~vl~ 354 (476)
+++.|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 588999885
No 348
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.44 E-value=7.5e-07 Score=89.26 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=88.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEe-eeeEEEEeC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETE 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~~~~~~~~~ 121 (476)
.+.+++.++|-+|+|||++++.+. .+.++ -...-.|.. +-..++.+.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt--radve------------------------------vqpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT--RADDE------------------------------VQPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc--ccccc------------------------------cCCcccccchhhhhhhhhh
Confidence 456889999999999999998762 11111 011111221 222345556
Q ss_pred CeEEEEEeCCCCcCc--------HHHHhhhcc-ccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEE
Q 011837 122 TTRFTILDAPGHKSY--------VPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLL 187 (476)
Q Consensus 122 ~~~~~liDtPGh~~f--------~~~~~~~~~-~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iI 187 (476)
-.++..+||||--+- -...++++. .--++++++|-++-. |+ ...+.+.+... .+.+ +|
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---Gy----Sva~QvkLfhsIKpLFaNK~-~I 285 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GY----SVAAQVKLYHSIKPLFANKV-TI 285 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CC----CHHHHHHHHHHhHHHhcCCc-eE
Confidence 677899999993322 112234443 446688899977532 12 23334433333 2455 88
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+||+|....+. +.+-.+++...+..- .+++++.+|..+.+|+-++
T Consensus 286 lvlNK~D~m~~ed----L~~~~~~ll~~~~~~-----~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 286 LVLNKIDAMRPED----LDQKNQELLQTIIDD-----GNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred EEeecccccCccc----cCHHHHHHHHHHHhc-----cCceEEEecccchhceeeH
Confidence 9999999865432 222222232233332 3578999999999998763
No 349
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.44 E-value=4.2e-07 Score=87.36 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=51.9
Q ss_pred EEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-----
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET----- 122 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~----- 122 (476)
|+++|.+|+|||||+++|....- ......+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-------------------------------~~~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-------------------------------EAANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-------------------------------ccccccccchhceeeeEEeccchhhh
Confidence 58999999999999999942111 001123444444433333322
Q ss_pred ------------eEEEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCC
Q 011837 123 ------------TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ------------~~~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~ 158 (476)
..+.|+|+||-. ......+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 259999999932 233345566789999999999853
No 350
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.1e-06 Score=87.98 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=64.5
Q ss_pred EEEEEeCCCCc---CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHK---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~---~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.++|.||-. .+..-.....-.+|+.|||+.|..-. .++..|+......+.|+++++.||.|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl--------t~sek~Ff~~vs~~KpniFIlnnkwDasas-- 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL--------TLSEKQFFHKVSEEKPNIFILNNKWDASAS-- 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh--------HHHHHHHHHHhhccCCcEEEEechhhhhcc--
Confidence 58999999942 33333334456899999999998765 377777777777778889999999997321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 236 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~ 236 (476)
.++..+.++.++.+ |+-..+. ...-.++.||++.
T Consensus 277 e~ec~e~V~~Qi~e-L~v~~~~-eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 277 EPECKEDVLKQIHE-LSVVTEK-EAADRVFFVSAKE 310 (749)
T ss_pred cHHHHHHHHHHHHh-cCcccHh-hhcCeeEEEeccc
Confidence 23344555555442 2211111 1122677888543
No 351
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.40 E-value=2.9e-06 Score=66.15 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=55.0
Q ss_pred CCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 286 MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 286 ~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
.|.++++||.+|+|++||.|++...+...+|..|... ..+++++.|||+++ +.++ + ++.||+|+
T Consensus 13 ~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gdtl~ 80 (81)
T cd04091 13 FGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGDTFT 80 (81)
T ss_pred CCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCCEec
Confidence 4999999999999999999999888877888888654 56899999999999 5665 3 88999986
No 352
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.39 E-value=1.1e-06 Score=87.19 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=53.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC---
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--- 122 (476)
++|+++|.+|+|||||+++|....- ......+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-------------------------------~v~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-------------------------------EAANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-------------------------------eecccccccccceEEEEEeccccc
Confidence 6899999999999999999943210 001123444444333322222
Q ss_pred --------------eEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCC
Q 011837 123 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 --------------~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~ 158 (476)
..+.|+|+||-.+ .....+..++.+|++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3589999999322 23345566789999999999853
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.37 E-value=8e-06 Score=79.62 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=88.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCc-hhhhccccEEeeeeEEEEeCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTN-EEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~-~~e~~~g~ti~~~~~~~~~~~ 122 (476)
-..+|.++|..|.||||+++.|+... ..++. ..+.. .....+++.+......+.-++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDET---------------------EIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCCC---------------------CccCcccccCCcceEEEeeeeeeecCC
Confidence 35899999999999999999997541 11110 01111 111345566666666666555
Q ss_pred --eEEEEEeCCCCcCcHHH---------------------Hhhhc-------cccCEEEEEEECCCCccccccCCCCchH
Q 011837 123 --TRFTILDAPGHKSYVPN---------------------MISGA-------SQADIGVLVISARKGEFETGFEKGGQTR 172 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~---------------------~~~~~-------~~aD~avlVVda~~g~~e~~~~~~~qt~ 172 (476)
..+++|||||.-+++.+ -...- ...+++|+.+.++..-. .+...
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l------~~~DI 153 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL------KPLDI 153 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC------CHHHH
Confidence 45788999995544222 11111 13689999998764321 12333
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 173 e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
+.+..+.. .+. +|-||-|.|.. ..+.+...++.+...+...++
T Consensus 154 e~Mk~ls~-~vN-lIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 154 EAMKRLSK-RVN-LIPVIAKADTL----TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHhc-ccC-eeeeeeccccC----CHHHHHHHHHHHHHHHHHhCC
Confidence 33322221 244 78899999983 456788888888888887654
No 354
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.35 E-value=2.4e-06 Score=67.16 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 285 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
..|.++++||+||+|+.||.|+....+...+|..|... ..++++|.|||+++ +.++ .+++.||+|++
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~--v~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIG--LVNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEE--EECC--CCccccCEeeC
Confidence 46999999999999999999988776666677777654 57899999999999 4655 44889999974
No 355
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.33 E-value=1.5e-06 Score=88.77 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=92.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|.-|+|||+|+-.|+...= -+.-+ -+-.-++|- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef---------------------------~~~VP-~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEF---------------------------VDAVP-RRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhc---------------------------ccccc-ccCCccccC---CccCc
Confidence 355679999999999999999998863211 00000 011123333 22333
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-----~i~~iIvviNK~Dl 195 (476)
+....+++|++-..+-......-++.||++.+|.+.++... ++. -++. -|-+.+.+ ++| +|+|-||+|.
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T---~D~-ist~-WLPlir~~~~~~~~~P-VILvGNK~d~ 127 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST---VDR-ISTK-WLPLIRQLFGDYHETP-VILVGNKSDN 127 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH---hhh-hhhh-hhhhhhcccCCCccCC-EEEEeeccCC
Confidence 44558999999766655555667899999999998887432 110 1222 22334443 477 9999999998
Q ss_pred CCcCccHHH----HHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKER----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. ..... +..+..+..++ -..|.+||++-.|+.+++
T Consensus 128 ~~--~~~~s~e~~~~pim~~f~Ei-----------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 128 GD--NENNSDEVNTLPIMIAFAEI-----------ETCIECSALTLANVSELF 167 (625)
T ss_pred cc--ccccchhHHHHHHHHHhHHH-----------HHHHhhhhhhhhhhHhhh
Confidence 43 22221 22222222221 145788888888887753
No 356
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.30 E-value=2.3e-05 Score=66.56 Aligned_cols=148 Identities=21% Similarity=0.189 Sum_probs=87.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEe-eeeEEEEeC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETE-- 121 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~~~~~~~~~-- 121 (476)
..+|+++|.-+.|||.++++|+|-.-..... .--|++ .-...++++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~rg 57 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETDRG 57 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecCCC
Confidence 4789999999999999999998643322110 111221 112233332
Q ss_pred -CeEEEEEeCCCCcCcHHHH-hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEccC
Q 011837 122 -TTRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 194 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~-~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~D 194 (476)
...+.|.||.|...+..+. ..+++.+|+.+||.|..+... | |--+.+..-.. -.+| ++|..||.|
T Consensus 58 arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f----~rv~llKk~Idk~KdKKEvp-iVVLaN~rd 129 (198)
T KOG3883|consen 58 AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---F----QRVELLKKEIDKHKDKKEVP-IVVLANKRD 129 (198)
T ss_pred hhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---H----HHHHHHHHHHhhcccccccc-EEEEechhh
Confidence 3568999999998884333 346789999999999876431 1 22222211111 2477 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+... . +.+ .+..+.+.++ +.+..+.+++.....+.++
T Consensus 130 r~~p--~--~vd--~d~A~~Wa~r------Ekvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 130 RAEP--R--EVD--MDVAQIWAKR------EKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred cccc--h--hcC--HHHHHHHHhh------hheeEEEEEeccchhhhhH
Confidence 9422 1 111 1111222222 3567888988777666553
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.6e-05 Score=72.66 Aligned_cols=143 Identities=20% Similarity=0.287 Sum_probs=83.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhcc-ccEEeeeeEEEEeCC-
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIK-GKTVEVGRAHFETET- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~-g~ti~~~~~~~~~~~- 122 (476)
..||.++|.+|.|||||++.|.. ....++ + .+...++..+ .+.+......++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~-s~v~~~-------------s---------~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFK-SHVSDS-------------S---------SSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHH-HHHhhc-------------c---------CCCcccCcccceEEEEeeeeeeeecce
Confidence 58999999999999999999842 111110 0 0111222222 223333334445454
Q ss_pred -eEEEEEeCCC---------------------CcCcHHHHhhhcc-------ccCEEEEEEECCCCccccccCCCCchHH
Q 011837 123 -TRFTILDAPG---------------------HKSYVPNMISGAS-------QADIGVLVISARKGEFETGFEKGGQTRE 173 (476)
Q Consensus 123 -~~~~liDtPG---------------------h~~f~~~~~~~~~-------~aD~avlVVda~~g~~e~~~~~~~qt~e 173 (476)
-++++||||| |+.|++.-+...+ ..+++++.|.++.... -+-..|
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsL------rplDie 176 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSL------RPLDIE 176 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCcc------CcccHH
Confidence 4588999999 4445554444332 4678999998875432 244455
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 174 ~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
.+..+.. +-.+|-||-|.|...- +.-.+.++.++.-|...+++
T Consensus 177 flkrLt~--vvNvvPVIakaDtlTl----eEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 177 FLKRLTE--VVNVVPVIAKADTLTL----EERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHhh--hheeeeeEeecccccH----HHHHHHHHHHHHHHHhcCcc
Confidence 4443332 2336778999998443 23345666777777776654
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=5.9e-06 Score=81.46 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCeEEEEEeCCCCcCcHH-------HHhhhc-----cccCEEEEEEECCCCccccccCCCCchHHHHH-HHHHcCCceEE
Q 011837 121 ETTRFTILDAPGHKSYVP-------NMISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~-------~~~~~~-----~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~l~i~~iI 187 (476)
.++.+.||||||...+.. .+...+ ..++..+||+||+.|. .....+. .....++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 567899999999654322 222221 3578899999999763 2222222 23345554 3
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+++||+|.... .-.+.+.+ ... ..|+..++ +|++++++
T Consensus 264 iIlTKlD~t~~------~G~~l~~~----~~~------~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAK------GGVVFAIA----DEL------GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCC------ccHHHHHH----HHH------CCCEEEEe--CCCChhhC
Confidence 68999996321 11222222 222 35788887 78988764
No 359
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=4.9e-06 Score=73.31 Aligned_cols=148 Identities=21% Similarity=0.269 Sum_probs=98.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee--EEEEe
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR--AHFET 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~--~~~~~ 120 (476)
....+++++|..+.||||++.+.+ +|.. |+....|+.+.. ..|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeF-------------------------------e~~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEF-------------------------------EKTYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--cccc-------------------------------eecccCcceeEEeeeeeec
Confidence 568899999999999999999874 3321 111222322222 22322
Q ss_pred --CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEEccCCCC
Q 011837 121 --ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 --~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-~i~~iIvviNK~Dl~~ 197 (476)
...+|..|||.|++.|....-.+.-.+-+|+++.|...-.+- ..-.+.|-.+++.. ++| ++++.||.|...
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~-----~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTY-----KNVPRWHRDLVRVRENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhh-----hcchHHHHHHHHHhcCCC-eeeeccceeccc
Confidence 237899999999999987766666678899999998866542 23445555555554 578 999999999722
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. +++. +.+.+....+..++.+||++.-|.+.+
T Consensus 129 r--------~~k~------k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 129 R--------KVKA------KPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred c--------cccc------ccceeeecccceeEEeecccccccccc
Confidence 1 1111 112222234678999999999999875
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=98.24 E-value=7e-06 Score=81.26 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhh------ccccCEEEEEEECCCCccccccCCCCchHHHHHH-HHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~------~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~-~~~l~i~~iIvviNK~ 193 (476)
.++.+.||||||....-.+.+.. ...+|..+||+||..|- ...+.+.. ....++. - +++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~-g-iIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID-G-VILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC-E-EEEeee
Confidence 35679999999965432222222 23689999999998762 33333333 3356776 3 579999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|.... +-.+.+... .. ..|+.+++ +|++++++
T Consensus 290 D~~~~------~G~~ls~~~----~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADAK------GGAALSIAY----VI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCCC------ccHHHHHHH----HH------CcCEEEEe--CCCChhhc
Confidence 98321 112222221 11 35788887 69998764
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.23 E-value=1e-05 Score=78.17 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCcCcHHHHh-------hhc-----cccCEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEE
Q 011837 121 ETTRFTILDAPGHKSYVPNMI-------SGA-----SQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~-------~~~-----~~aD~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~l~i~~iI 187 (476)
.++.+.||||||....-...+ ... ..+|..+||+|+..+. ...+.+ .+.+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 567899999999765433322 111 2389999999998653 233333 333346665 3
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+++||+|.... +-.+.+.. ... ..|+..++ +|++++++
T Consensus 222 ~IlTKlDe~~~------~G~~l~~~----~~~------~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTAK------GGIILSIA----YEL------KLPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCCC------ccHHHHHH----HHH------CcCEEEEe--CCCChHhC
Confidence 58999997321 11222222 122 24677777 68887664
No 362
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.18 E-value=9.4e-06 Score=71.68 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=52.4
Q ss_pred hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 142 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 142 ~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
..+..+|++++|+|+.++.. .+..+....+...+.| +++|+||+|+.. ++.... ...+....
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~----~~~~~~----~~~~~~~~-- 69 (156)
T cd01859 8 RIIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLVP----KEVLEK----WKSIKESE-- 69 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC----HHHHHH----HHHHHHhC--
Confidence 34456999999999987653 2444444455566777 889999999832 212211 11222222
Q ss_pred CcCCCeeEEeeecccccccccc
Q 011837 222 NVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 222 ~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+++++||++|.|++++
T Consensus 70 ----~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 70 ----GIPVVYVSAKERLGTKIL 87 (156)
T ss_pred ----CCcEEEEEccccccHHHH
Confidence 247899999999999884
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.16 E-value=1.2e-05 Score=69.73 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=54.2
Q ss_pred HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHH
Q 011837 138 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 215 (476)
Q Consensus 138 ~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~ 215 (476)
+.....+..+|++++|+|+..+.. .+..+....+... +.| +++|+||+|+. + ++... .....
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~--~--~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADLL--T--EEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhcC--C--HHHHH----HHHHH
Confidence 355677889999999999988653 3444555555555 777 88999999993 2 22222 23334
Q ss_pred HHhccCCcCCCeeEEeeecccccc
Q 011837 216 LKASGYNVKKDVQFLPISGLMGLN 239 (476)
Q Consensus 216 l~~~~~~~~~~~~~ipvSa~~g~~ 239 (476)
++..+ .+++++||++|.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44433 3689999999886
No 364
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=1.8e-05 Score=80.54 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCCcCcH----HHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSYV----PNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~----~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.|+||||....- .++... ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 36789999999965443 333222 33689999999998762 2233333332 34554 3589999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 365
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=4.4e-05 Score=71.67 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=55.6
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+...|+|+|+.++|||||+|+|+....... .........+|+-+....... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~------------------------~~~~~~~~T~gi~~~~~~~~~-~~ 58 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD------------------------VMDTSQQTTKGIWMWSVPFKL-GK 58 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeE------------------------ecCCCCCCccceEEEeccccC-CC
Confidence 46778899999999999999999964310100 000011122343332221111 24
Q ss_pred CeEEEEEeCCCCcCc------HHHHhhhccc--cCEEEEEEECCC
Q 011837 122 TTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARK 158 (476)
Q Consensus 122 ~~~~~liDtPGh~~f------~~~~~~~~~~--aD~avlVVda~~ 158 (476)
+..+.++||||-.+. ....+.++.. +|+.|+.++...
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999995432 3334555555 999999988764
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.11 E-value=4.4e-06 Score=73.91 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...+|+++|.+|+|||||+|+|+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHh
Confidence 35789999999999999999995
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.10 E-value=1.5e-05 Score=72.84 Aligned_cols=93 Identities=14% Similarity=-0.005 Sum_probs=54.9
Q ss_pred cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHH
Q 011837 136 YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 215 (476)
Q Consensus 136 f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~ 215 (476)
|...+...+..+|++++|+|+.+... ...+.+ .....+.| +++|+||+|+...+...+..+...+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA--KA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH--HH
Confidence 56666667789999999999987431 222222 22234666 88999999995322111111111100 01
Q ss_pred HHhccCCcCCCeeEEeeecccccccccc
Q 011837 216 LKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 216 l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+..++. ..+++++||++|.|++++
T Consensus 92 ~~~~~~~---~~~i~~vSA~~~~gi~eL 116 (190)
T cd01855 92 AAGLGLK---PKDVILISAKKGWGVEEL 116 (190)
T ss_pred HhhcCCC---cccEEEEECCCCCCHHHH
Confidence 1222221 125899999999999985
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.07 E-value=1.7e-05 Score=70.08 Aligned_cols=83 Identities=16% Similarity=0.029 Sum_probs=52.3
Q ss_pred HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHH
Q 011837 140 MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLK 217 (476)
Q Consensus 140 ~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~ 217 (476)
..+++..+|.+++|+|+..+.. .+..+....+... +.| +|+|+||+|+.. ++......+. +.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~----~~~~~~~~~~----~~ 65 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP----TWVTARWVKI----LS 65 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhcCC----HHHHHHHHHH----Hh
Confidence 3467889999999999988642 2344444444433 366 789999999932 2222222222 22
Q ss_pred hccCCcCCCeeEEeeecccccccccc
Q 011837 218 ASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 218 ~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. + ...++++||++|.|+.++
T Consensus 66 ~~-~----~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 66 KE-Y----PTIAFHASINNPFGKGSL 86 (157)
T ss_pred cC-C----cEEEEEeeccccccHHHH
Confidence 11 1 123689999999999874
No 369
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.07 E-value=6.1e-05 Score=75.27 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=80.2
Q ss_pred ccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH----
Q 011837 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT---- 180 (476)
Q Consensus 108 g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~---~e~~~~~~~qt~e~l~~~~~---- 180 (476)
-.|.-.....|..++..+.++|.+|+..+.+.+......++++++|||.++-. .|.. . .....+.+.+...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~-~-~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE-S-TNRMQESLNLFESICNS 246 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC-c-chHHHHHHHHHHHHHcC
Confidence 34444445567778889999999999999999999999999999999987521 1100 0 0112222222222
Q ss_pred ---cCCceEEEEEEccCCCC------------cCccH-HHHHHHHHHHHHHHHhccCC-cCCCeeEEeeecccccccccc
Q 011837 181 ---LGVTKLLLVVNKMDDHT------------VNWSK-ERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 181 ---l~i~~iIvviNK~Dl~~------------~~~~~-~~~~~~~~~l~~~l~~~~~~-~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.| ++++.||.|+.. ++|.. ..++...+-+...+....-. ....+-...++|..-.++..+
T Consensus 247 ~~~~~~p-iil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v 325 (342)
T smart00275 247 RWFANTS-IILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVV 325 (342)
T ss_pred ccccCCc-EEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHH
Confidence 2566 999999999741 11111 23444455555544443321 122355567777777776654
No 370
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=8.7e-05 Score=73.00 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+|-||+|||||+++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT 23 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALT 23 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHH
Confidence 3689999999999999999985
No 371
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.05 E-value=4.4e-05 Score=61.15 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=50.9
Q ss_pred cCCeEEEEEEEEeeEecCCEEEEec---------CCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 285 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 285 ~~G~v~~g~v~sG~l~~gd~v~~~p---------~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
..|.++++||++|+|+.||.+.+.. .....+|..|... ..++++|.|||+|++ .+++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 4688899999999999999998765 2234677777654 478999999999995 5543 367787
Q ss_pred EEe
Q 011837 352 VLS 354 (476)
Q Consensus 352 vl~ 354 (476)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 653
No 372
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.05 E-value=1.6e-05 Score=71.42 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=57.5
Q ss_pred CCCCc-CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHH
Q 011837 130 APGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 208 (476)
Q Consensus 130 tPGh~-~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~ 208 (476)
-|||- +.+.++...+..||.+++|+|+..+.. ....+.+.. ..+.| +++++||+|+.. ++....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~--~~~k~-~ilVlNK~Dl~~----~~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKI--LGNKP-RIIVLNKADLAD----PKKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhH--hcCCC-EEEEEehhhcCC----hHHHHH-
Confidence 37764 467777788899999999999987642 122222222 13566 789999999932 211111
Q ss_pred HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 209 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 209 ~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..++++.. ..+++++||+++.|++++
T Consensus 67 ---~~~~~~~~------~~~vi~iSa~~~~gi~~L 92 (171)
T cd01856 67 ---WLKYFESK------GEKVLFVNAKSGKGVKKL 92 (171)
T ss_pred ---HHHHHHhc------CCeEEEEECCCcccHHHH
Confidence 11222222 236899999999999885
No 373
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.03 E-value=6.5e-06 Score=73.90 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=39.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|.+|+|||||+++|+.... .......|+|.......+ +
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~------------------------------~~~~~~pg~T~~~~~~~~---~ 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA------------------------------CNVGATPGVTKSMQEVHL---D 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCccc------------------------------ceecCCCCeEcceEEEEe---C
Confidence 3457999999999999999999953211 011234677776554433 2
Q ss_pred eEEEEEeCCC
Q 011837 123 TRFTILDAPG 132 (476)
Q Consensus 123 ~~~~liDtPG 132 (476)
..+.++||||
T Consensus 162 ~~~~l~DtPG 171 (172)
T cd04178 162 KKVKLLDSPG 171 (172)
T ss_pred CCEEEEECcC
Confidence 4689999999
No 374
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.03 E-value=1.2e-05 Score=73.77 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCcCcHHHHhh------hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~------~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
+++.+.||||||...+....+. .....+-++||+||+.+. .............++..+ ++||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~l--IlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDGL--ILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCEE--EEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCceE--EEEeec
Confidence 4567999999997655333221 123688999999999874 233444455566788754 699999
Q ss_pred CC
Q 011837 195 DH 196 (476)
Q Consensus 195 l~ 196 (476)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 375
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=7e-05 Score=73.73 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=84.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
..++-++|..|.|||||+|.|+.+ ....+++ ............++.......+-++
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~-~l~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLT-DLSGNRE---------------------VPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhh-hccCCcc---------------------cCCcccCccccceeeeeeeeecCCCeE
Confidence 589999999999999999998643 1111111 0111222233455555555555555
Q ss_pred eEEEEEeCCCCcCcHHH-------------Hh------------hhcc--ccCEEEEEEECCC-CccccccCCCCchHHH
Q 011837 123 TRFTILDAPGHKSYVPN-------------MI------------SGAS--QADIGVLVISARK-GEFETGFEKGGQTREH 174 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~-------------~~------------~~~~--~aD~avlVVda~~-g~~e~~~~~~~qt~e~ 174 (476)
-+++++||||.-|++.+ .. +... ..+++|+.|.... |+. +...+.
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~-------p~Di~~ 151 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLK-------PLDIEF 151 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCc-------HhhHHH
Confidence 45788999994433211 10 0111 5789999998664 332 333333
Q ss_pred HHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 175 l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
+..+. ..+. +|-||-|.|.. ..+.+...++.+...+...++
T Consensus 152 Mk~l~-~~vN-iIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 152 MKKLS-KKVN-LIPVIAKADTL----TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHh-cccc-ccceeeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 32222 2455 77899999984 345677777777777776543
No 376
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.02 E-value=1.1e-05 Score=74.71 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.-+++++|-+..|||||+..|. |..+.- ...-+.|.........+++.+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~---g~~s~v----------------------------asyefttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLT---GTFSEV----------------------------AAYEFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhc---CCCCcc----------------------------ccccceeEEEecceEeccccc
Confidence 3589999999999999998873 211110 001123333333345577889
Q ss_pred EEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCCCc
Q 011837 125 FTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 125 ~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~g~ 160 (476)
+.+.|.||-- ---++++..++.|..+++|+|+....
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 9999999932 23556677788999999999998754
No 377
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.98 E-value=0.00011 Score=70.32 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=46.9
Q ss_pred HcCCceEEEEEEccCCC-----CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccc
Q 011837 180 TLGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 180 ~l~i~~iIvviNK~Dl~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~ 242 (476)
.+|+| ++||++|+|.. ..+|..+.|+.+...+++|+-++|. ..|.+|++...|++-
T Consensus 220 NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 220 NLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred cCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 35777 88999999973 3467788999999999999988874 589999999999875
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.95 E-value=4.9e-05 Score=68.31 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhhhc--cccCEEEEEEECCCCccccccCCCCchHHH-HHHHHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~-l~~~~~l~i~~iIvviNK~ 193 (476)
.++.+.++||||...+ +..+.... ...|.+++|+|+..+. ...+. ..+....++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 3567899999998643 33322211 2589999999996542 23333 3334456664 3577999
Q ss_pred CCC
Q 011837 194 DDH 196 (476)
Q Consensus 194 Dl~ 196 (476)
|..
T Consensus 150 D~~ 152 (173)
T cd03115 150 DGD 152 (173)
T ss_pred cCC
Confidence 983
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.92 E-value=5.7e-05 Score=66.64 Aligned_cols=75 Identities=25% Similarity=0.223 Sum_probs=47.2
Q ss_pred CEEEEEEECCCCccccccCCCCchHHHH-HHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCC
Q 011837 148 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 226 (476)
Q Consensus 148 D~avlVVda~~g~~e~~~~~~~qt~e~l-~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 226 (476)
|++++|+|+..+.. ....... ..+...++| +|+|+||+|+.. ++...+... .+ .... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~----~~~~~~~~~---~~-~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADLVP----KEVLRKWLA---YL-RHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhcCC----HHHHHHHHH---HH-HhhC-----C
Confidence 78999999987642 2223232 345556787 889999999932 222222111 11 2111 2
Q ss_pred eeEEeeecccccccccc
Q 011837 227 VQFLPISGLMGLNMKTR 243 (476)
Q Consensus 227 ~~~ipvSa~~g~~i~~~ 243 (476)
.+++++||++|.|+.++
T Consensus 60 ~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 60 TIPFKISATNGQGIEKK 76 (155)
T ss_pred ceEEEEeccCCcChhhH
Confidence 36899999999999885
No 380
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.92 E-value=1.4e-05 Score=70.63 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|++++|||||++.|+..... .....+|.|.......+ +
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~---~ 144 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL------------------------------KVGNVPGTTTSQQEVKL---D 144 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc------------------------------cccCCCCcccceEEEEe---c
Confidence 34688999999999999999999642211 11223566666554433 2
Q ss_pred eEEEEEeCCC
Q 011837 123 TRFTILDAPG 132 (476)
Q Consensus 123 ~~~~liDtPG 132 (476)
..+.++||||
T Consensus 145 ~~~~liDtPG 154 (155)
T cd01849 145 NKIKLLDTPG 154 (155)
T ss_pred CCEEEEECCC
Confidence 5699999999
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=3.4e-05 Score=77.30 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred eCCeEEEEEeCCCCc---CcHHHHhhhc---cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---------CCc
Q 011837 120 TETTRFTILDAPGHK---SYVPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 184 (476)
Q Consensus 120 ~~~~~~~liDtPGh~---~f~~~~~~~~---~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---------~i~ 184 (476)
+.++.+.||||||.. ++....+..+ ..++-.+||++|+.+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 356789999999965 3333344433 3445669999999874 2333444333333 244
Q ss_pred eEEEEEEccCC
Q 011837 185 KLLLVVNKMDD 195 (476)
Q Consensus 185 ~iIvviNK~Dl 195 (476)
. +++||+|-
T Consensus 285 ~--~I~TKlDE 293 (374)
T PRK14722 285 G--CILTKLDE 293 (374)
T ss_pred E--EEEecccc
Confidence 3 46899997
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.92 E-value=6.7e-06 Score=72.28 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|++|+|||||+|.|+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6889999999999999999964
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.90 E-value=3.3e-05 Score=73.58 Aligned_cols=83 Identities=22% Similarity=0.194 Sum_probs=54.3
Q ss_pred hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 142 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 142 ~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
..++.+|.+++|+|+....+ .+ ....+.+..+...++| +++|+||+||... . .. ..+....++..|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~---~-~~---~~~~~~~~~~~g- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD---E-DM---EKEQLDIYRNIG- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccCCC---H-HH---HHHHHHHHHHCC-
Confidence 35789999999999986541 01 2334445555667888 7889999999321 1 11 112222333443
Q ss_pred CcCCCeeEEeeecccccccccc
Q 011837 222 NVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 222 ~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++.+||++|.|++++
T Consensus 98 -----~~v~~~SAktg~gi~eL 114 (245)
T TIGR00157 98 -----YQVLMTSSKNQDGLKEL 114 (245)
T ss_pred -----CeEEEEecCCchhHHHH
Confidence 47999999999999885
No 384
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=1.9e-05 Score=78.72 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCcCc----HHHHhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f----~~~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.+.||||||.... +..+...+ ..+|..+||+||+.+. ....+.+......++..+ ++||+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idgl--I~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDGI--VFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCEE--EEEcccC
Confidence 468999999996543 33333322 3578899999997653 244566666666788754 6899997
Q ss_pred C
Q 011837 196 H 196 (476)
Q Consensus 196 ~ 196 (476)
.
T Consensus 390 T 390 (436)
T PRK11889 390 T 390 (436)
T ss_pred C
Confidence 3
No 385
>PRK12289 GTPase RsgA; Reviewed
Probab=97.88 E-value=4.5e-05 Score=76.15 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=54.8
Q ss_pred hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 143 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 143 ~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
.++.+|.+++|+|+.+..++ ..+..+.+..+...++| +|+|+||+|+ .+ ++..+ .....+..+|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DL--v~--~~~~~----~~~~~~~~~g~- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADL--VS--PTEQQ----QWQDRLQQWGY- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhc--CC--hHHHH----HHHHHHHhcCC-
Confidence 36789999999999865421 01334555556667888 7899999999 32 22222 22333444444
Q ss_pred cCCCeeEEeeecccccccccc
Q 011837 223 VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 223 ~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+++++||++|.|+.++
T Consensus 151 -----~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 151 -----QPLFISVETGIGLEAL 166 (352)
T ss_pred -----eEEEEEcCCCCCHHHH
Confidence 5899999999999875
No 386
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.87 E-value=0.00016 Score=57.98 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=47.2
Q ss_pred EEEEEE--ccC-CeEEEEEEEEeeEecCCEEEEecCC---------ceEEEEEEEEC----CeeeeecCCCCeEEEEEec
Q 011837 278 PIIDKF--KDM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 341 (476)
Q Consensus 278 ~v~~~~--~~~-G~v~~g~v~sG~l~~gd~v~~~p~~---------~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~ 341 (476)
.|..+. +.. |...++||+||+|+.||.|++...+ ...+|..|... ..++++|.|||+|+ +.|
T Consensus 4 ~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~--v~g 81 (94)
T cd04090 4 HVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVL--IKG 81 (94)
T ss_pred EEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEE--EEC
Confidence 444444 234 4579999999999999999875321 24577777764 57899999999999 466
Q ss_pred cCc
Q 011837 342 IEE 344 (476)
Q Consensus 342 ~~~ 344 (476)
++.
T Consensus 82 l~~ 84 (94)
T cd04090 82 IDS 84 (94)
T ss_pred cch
Confidence 544
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.85 E-value=5.1e-05 Score=67.23 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
-+.++|..|+|||||+.+|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4679999999999999998754
No 388
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.81 E-value=4.3e-05 Score=74.20 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCc-CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHH
Q 011837 131 PGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 209 (476)
Q Consensus 131 PGh~-~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~ 209 (476)
|||- +..+++...+..+|++++|+||..+.. ....+....+ .+.| +|+|+||+|+.+ ++......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL~~----~~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADLAD----PAVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEccccCC----HHHHHHHH
Confidence 7875 456667778899999999999986542 1222222222 2556 889999999932 22122211
Q ss_pred HHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 210 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 210 ~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..++..+ .+++++||.++.|+.++
T Consensus 71 ----~~~~~~~------~~vi~iSa~~~~gi~~L 94 (276)
T TIGR03596 71 ----KYFEEKG------IKALAINAKKGKGVKKI 94 (276)
T ss_pred ----HHHHHcC------CeEEEEECCCcccHHHH
Confidence 2222222 36899999999999874
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.81 E-value=2.3e-05 Score=68.58 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.+.||||||.. ......+..||.+++|+....+. ....++ ...+..-. +++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D----------~y~~~k-~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGD----------DIQAIK-AGIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchh----------HHHHhh-hhHhhhcC-EEEEeCCC
Confidence 36789999999954 33445778899999999876332 111111 12222333 47999998
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.80 E-value=2.4e-05 Score=71.58 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=39.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+++++|.+|+|||||+|+|+...-.-.. .. ........+|.|.+.....+. ..+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~-----------~~~~~~~~~gtT~~~~~~~~~---~~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKK-----------LK-----------DLLTTSPIPGTTLDLIKIPLG---NGK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccc-----------cc-----------cccccCCCCCeeeeeEEEecC---CCC
Confidence 58999999999999999999643210000 00 000112345778776555442 258
Q ss_pred EEEeCCC
Q 011837 126 TILDAPG 132 (476)
Q Consensus 126 ~liDtPG 132 (476)
.|+||||
T Consensus 183 ~~~DtPG 189 (190)
T cd01855 183 KLYDTPG 189 (190)
T ss_pred EEEeCcC
Confidence 9999999
No 391
>PRK00098 GTPase RsgA; Reviewed
Probab=97.74 E-value=0.00011 Score=72.22 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=53.3
Q ss_pred ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc
Q 011837 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 223 (476)
++.+|.+++|+|+.+..+. .....+.+..+...++| +++|+||+|+. + ..+... .....++..+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~--~-~~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLL--D-DLEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcC--C-CHHHHH----HHHHHHHHCC---
Confidence 6899999999999764321 01223444556677888 78899999993 2 122222 2223334444
Q ss_pred CCCeeEEeeecccccccccc
Q 011837 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++++||++|.|++++
T Consensus 142 ---~~v~~vSA~~g~gi~~L 158 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDEL 158 (298)
T ss_pred ---CeEEEEeCCCCccHHHH
Confidence 46899999999999874
No 392
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00016 Score=70.22 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=82.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhccccEEeeeeE-EE----
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRA-HF---- 118 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~~-~~---- 118 (476)
+-|.++|.-..||||+++.|+... . . + ...|. +.-.+..+|-...++.-.|.+.-+... .|
T Consensus 59 Pmill~GqyStGKTtfi~yLle~d-y-p--g--------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQD-Y-P--G--------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCC-C-C--c--------cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence 578899999999999999997321 0 0 0 01121 222333445555555566666554321 11
Q ss_pred -------------EeCC---eEEEEEeCCCCc-----------CcHHHHhhhccccCEEEEEEECCCCccccccCCCCch
Q 011837 119 -------------ETET---TRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 119 -------------~~~~---~~~~liDtPGh~-----------~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt 171 (476)
...+ ..++++||||-- +|..-..--+..+|.++|+.|+..-.. ...+
T Consensus 127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI------sdEf 200 (532)
T KOG1954|consen 127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI------SDEF 200 (532)
T ss_pred hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc------cHHH
Confidence 0111 458999999932 344433344678999999999987432 2567
Q ss_pred HHHHHHHHHcCCceEEEEEEccCC
Q 011837 172 REHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 172 ~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+..++...-+ +=||+||.|.
T Consensus 201 ~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 201 KRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHhhCCcce-eEEEeccccc
Confidence 7777777765544 6679999999
No 393
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.73 E-value=0.00037 Score=71.60 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCcCcHHHH------hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEccCC
Q 011837 123 TRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~------~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~Dl 195 (476)
+.+.|+||||...+-..+ +..+..+|.++||+|+..|. ...+.+.... .+++. -+++||+|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~~l~i~--gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHEAVGIG--GIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHhcCCCC--EEEEecccC
Confidence 478999999966553332 23345789999999998762 3333333322 34454 357899996
No 394
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.72 E-value=0.00045 Score=71.42 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=45.1
Q ss_pred cCCceEEEEEEccCCC-----CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccc
Q 011837 181 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 181 l~i~~iIvviNK~Dl~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~ 242 (476)
+|+| ++||++|.|.. ..+|.++.|+.+.+.++.++-.+|. ..|.+|.+...|+.-
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDL 254 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHH
Confidence 4677 99999999963 2358889999999999999888764 588899988888765
No 395
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.71 E-value=4.5e-05 Score=66.14 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
+++++|.+|+|||||+++|+
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 89999999999999999995
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00016 Score=73.69 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=43.3
Q ss_pred eCCeEEEEEeCCCCcCcHHHH---h---hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 120 TETTRFTILDAPGHKSYVPNM---I---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~---~---~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
..++.+.||||+|......+. + ......+-.+||+||+.+. ....+.+......++.. +++||+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~--~I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHG--CIITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEee
Confidence 356789999999965542221 1 2223456788999999753 23444445555678875 479999
Q ss_pred CCC
Q 011837 194 DDH 196 (476)
Q Consensus 194 Dl~ 196 (476)
|-.
T Consensus 337 DEt 339 (420)
T PRK14721 337 DEA 339 (420)
T ss_pred eCC
Confidence 973
No 397
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.65 E-value=0.00013 Score=71.23 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCCCcC-cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHH
Q 011837 130 APGHKS-YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 208 (476)
Q Consensus 130 tPGh~~-f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~ 208 (476)
=|||-. -.+++...+..+|++|+|+|+..+.. ....+...... +.| +++|+||+|+ .+ .+..+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL--~~--~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDL--AD--PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhc--CC--HHHHHH-
Confidence 477743 35556667889999999999987542 12222222222 566 7899999999 32 222222
Q ss_pred HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 209 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 209 ~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..++++.. ..+++++|+.++.|+.++
T Consensus 72 ---~~~~~~~~------~~~vi~vSa~~~~gi~~L 97 (287)
T PRK09563 72 ---WIEYFEEQ------GIKALAINAKKGQGVKKI 97 (287)
T ss_pred ---HHHHHHHc------CCeEEEEECCCcccHHHH
Confidence 22223222 246899999999999875
No 398
>PRK12288 GTPase RsgA; Reviewed
Probab=97.62 E-value=5.8e-05 Score=75.37 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++++|.+|+|||||+|+|+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 479999999999999999963
No 399
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.62 E-value=5.7e-06 Score=72.59 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=98.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe-
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 123 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~- 123 (476)
..++.|+|.-++|||+++.+-++..- .+++ ..-|..+.....+.|+.+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nf----------------------s~~y---------RAtIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNF----------------------SYHY---------RATIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHH----------------------HHHH---------HHHHhHHHHHHHhccChHH
Confidence 46888999999999999987654220 0000 001222222233444443
Q ss_pred --EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cC--CceEEEEEEccCCCC
Q 011837 124 --RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LG--VTKLLLVVNKMDDHT 197 (476)
Q Consensus 124 --~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~--i~~iIvviNK~Dl~~ 197 (476)
++.|||..|+++|..++--....|.++.+|+|.+.... |+...-+++.+.--.. .| +| +++..||+|.
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~t---fe~~skwkqdldsk~qLpng~Pv~-~vllankCd~-- 147 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLT---FEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQ-- 147 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccc---ccHHHHHHHhccCcccCCCCCcch-heeccchhcc--
Confidence 46899999999998777667789999999999887643 2211111221111111 13 44 6788999998
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. .....+.-..+..+.++-||. ....+|++...|+.+.
T Consensus 148 e---~~a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 148 E---KSAKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEA 185 (229)
T ss_pred C---hHhhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHH
Confidence 2 233444446677777887775 6899999999999885
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.62 E-value=0.00035 Score=64.33 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=50.5
Q ss_pred CCeEEEEEeC-CCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDt-PGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
+.+.+.++|| +|-+.|-+-+ ...+|.+|.|+|++...+ ...++.-.++..+|++++.+++||+|-
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 4577999998 4666665443 356899999999887553 356667788889998889999999996
No 401
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00036 Score=70.61 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCcCc----HHHHh---hhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 121 ETTRFTILDAPGHKSY----VPNMI---SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~---~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
.++.+.||||||.... +..+. ... ....-.+||+||+.+. .+..+.+......++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678999999996533 22222 211 1244689999999874 35555666667778875 4799
Q ss_pred ccCCC
Q 011837 192 KMDDH 196 (476)
Q Consensus 192 K~Dl~ 196 (476)
|+|-.
T Consensus 368 KLDEt 372 (432)
T PRK12724 368 KLDEA 372 (432)
T ss_pred cccCC
Confidence 99973
No 402
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.61 E-value=0.0001 Score=66.16 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++++|.+++|||||+++|+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~ 136 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999995
No 403
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.61 E-value=0.00011 Score=71.77 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=39.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+++++|.+|+|||||+|+|+...- .......|+|....... . +
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~------------------------------~~~~~~~g~T~~~~~~~--~-~ 165 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI------------------------------AKTGNRPGVTKAQQWIK--L-G 165 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc------------------------------cccCCCCCeEEEEEEEE--e-C
Confidence 3457899999999999999999953110 01112456777654332 2 3
Q ss_pred eEEEEEeCCCC
Q 011837 123 TRFTILDAPGH 133 (476)
Q Consensus 123 ~~~~liDtPGh 133 (476)
..+.|+||||-
T Consensus 166 ~~~~l~DtPGi 176 (287)
T PRK09563 166 KGLELLDTPGI 176 (287)
T ss_pred CcEEEEECCCc
Confidence 46899999994
No 404
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.60 E-value=9.7e-05 Score=71.75 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...+++++|.+|+|||||+++|+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999999995
No 405
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.60 E-value=0.00025 Score=69.25 Aligned_cols=80 Identities=23% Similarity=0.184 Sum_probs=52.7
Q ss_pred ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc
Q 011837 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 223 (476)
++.+|.+++|+|++...+ +. ....+.+..+...++| +++|+||+|+... ... .. ........+
T Consensus 76 ~anvD~vllV~d~~~p~~----s~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~----~~~---~~-~~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFF----NP-RLLDRYLVAAEAAGIE-PVIVLTKADLLDD----EEE---EL-ELVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCC----CH-HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh----HHH---HH-HHHHHHhCC---
Confidence 678999999999987642 10 2334456666777888 7889999999421 111 11 111122233
Q ss_pred CCCeeEEeeecccccccccc
Q 011837 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++++||++|.|++++
T Consensus 139 ---~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 ---YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred ---CeEEEEECCCCccHHHH
Confidence 47999999999998874
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.59 E-value=7.5e-05 Score=71.75 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
..+++|++|+|||||+|+|+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~ 185 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALL 185 (301)
T ss_pred eEEEECCCCCcHHHHHHhhC
Confidence 67899999999999999995
No 407
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=0.00029 Score=71.00 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=61.0
Q ss_pred CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHH
Q 011837 133 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 212 (476)
Q Consensus 133 h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l 212 (476)
.++|..........+|++++|+|+.+-. ....+.+.... .+.| +++|+||+|+...+.. .+++.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~~---~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSVN---LSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCCC---HHHHHHHH
Confidence 4567765555557889999999986532 23333332211 2455 8899999999543211 23444555
Q ss_pred HHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 213 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 213 ~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..+++..++. ...++++||++|.|++++.
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELL 145 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHH
Confidence 5556666653 1258999999999998853
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00036 Score=70.56 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhhhcc--ccC-EEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMISGAS--QAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~~~~--~aD-~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
.++.+.||||||.... +..+..-+. .++ -.+||+||+.+. ....+.+.....+++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 5678999999995432 222222222 223 689999999874 34555555555677775 479999
Q ss_pred CCC
Q 011837 194 DDH 196 (476)
Q Consensus 194 Dl~ 196 (476)
|-.
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 973
No 409
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.55 E-value=8e-05 Score=73.76 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=40.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+...+++++|-+|+|||||+|+|+....+ ...+..|+|-........
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~------------------------------~~s~~PG~Tk~~q~i~~~--- 176 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA------------------------------KTSNRPGTTKGIQWIKLD--- 176 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce------------------------------eeCCCCceecceEEEEcC---
Confidence 34578999999999999999999643321 112345777766555443
Q ss_pred eEEEEEeCCC
Q 011837 123 TRFTILDAPG 132 (476)
Q Consensus 123 ~~~~liDtPG 132 (476)
..+.|+||||
T Consensus 177 ~~i~LlDtPG 186 (322)
T COG1161 177 DGIYLLDTPG 186 (322)
T ss_pred CCeEEecCCC
Confidence 3489999999
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00043 Score=71.85 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCeEEEEEeCCCCcCcHHHH------hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~------~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.+.||||||...+-... +.... ....+||++++.+. .+..+.+......++. -+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~~--gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF--------SDLDEVVRRFAHAKPQ--GVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh--------hHHHHHHHHHHhhCCe--EEEEecCc
Confidence 45789999999964432221 12222 34578899988653 2444455545555543 46899999
Q ss_pred C
Q 011837 195 D 195 (476)
Q Consensus 195 l 195 (476)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 7
No 411
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.51 E-value=0.0016 Score=69.60 Aligned_cols=179 Identities=17% Similarity=0.232 Sum_probs=122.9
Q ss_pred EeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCcCccHHHHH
Q 011837 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 206 (476)
Q Consensus 128 iDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN-K~Dl~~~~~~~~~~~ 206 (476)
-|+-|..+-+.+.+..+...+.-+=|+.+.-|. -++..+.++...+- +|++.| |.+.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~---------i~~~Dv~~a~~~~a--~i~~Fnv~~~~----------- 449 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG---------ITETDISLASASNA--IIIGFNVRPDA----------- 449 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecCC---------CchhhHHHHHhcCC--EEEEEecCCCH-----------
Confidence 688888888888888887788888888888774 57777777877763 566766 3331
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEEc--
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 284 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~~-- 284 (476)
..+...+.. +++++.-+- +-++.+. +.+++..+..|.....--.+..|..+|+
T Consensus 450 ----~~~~~a~~~------~v~i~~~~i-----IY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~ 504 (587)
T TIGR00487 450 ----TAKNVAEAE------NVDIRYYSV-----IYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFNVP 504 (587)
T ss_pred ----HHHHHHHHc------CCeEEEeCh-----HHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEecC
Confidence 122223332 334443221 1222111 3334444333333222233556677884
Q ss_pred cCCeEEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 285 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
..|.++..+|..|+|+.|..+++...+. ..+|.||+++++++.++..|+-|++.+.+. .+++.||+|-.
T Consensus 505 ~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 505 KIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred CCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999998775 357999999999999999999999999976 66999999854
No 412
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.50 E-value=0.00078 Score=60.54 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.1
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.++|||+.... .....+..+|.+|+++++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986544 34566789999999999887543 344555566666677767789999986
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.50 E-value=0.00033 Score=71.75 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhh--hccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~--~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.|+||||.... ...+.. ....+|.++||+|+..|- ...+.+.... ..++. -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---------~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---------DAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---------HHHHHHHHHHhhCCCC--EEEEeCc
Confidence 3577999999995433 222211 123678889999997642 3333333333 45565 2578999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|-
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 95
No 414
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.49 E-value=0.00045 Score=62.27 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=42.5
Q ss_pred eEEEEEeCCC------CcCcHHHHhhhccc---cCEEEEEEECCCCccccccCCCCchHH------HHHHHHHcCCceEE
Q 011837 123 TRFTILDAPG------HKSYVPNMISGASQ---ADIGVLVISARKGEFETGFEKGGQTRE------HVMLAKTLGVTKLL 187 (476)
Q Consensus 123 ~~~~liDtPG------h~~f~~~~~~~~~~---aD~avlVVda~~g~~e~~~~~~~qt~e------~l~~~~~l~i~~iI 187 (476)
-.+.++|+|| |...+++.+..+.+ -=++++++|+.--+ ..++- .+.....+.+|+ |
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v--------D~~KfiSG~lsAlsAMi~lE~P~-I 168 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV--------DSTKFISGCLSALSAMISLEVPH-I 168 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh--------hHHHHHHHHHHHHHHHHHhcCcc-h
Confidence 4588999999 55557777776654 34577888876422 12222 233344568995 5
Q ss_pred EEEEccCCC
Q 011837 188 LVVNKMDDH 196 (476)
Q Consensus 188 vviNK~Dl~ 196 (476)
=+++||||.
T Consensus 169 NvlsKMDLl 177 (273)
T KOG1534|consen 169 NVLSKMDLL 177 (273)
T ss_pred hhhhHHHHh
Confidence 789999994
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0004 Score=69.19 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=39.0
Q ss_pred CeEEEEEeCCCCcCcHHHH----hhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNM----ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~----~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.+.||||||...+.... .... ..+|..+||+++.... .+..+.+......++.. +++||+|-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEcccC
Confidence 5789999999975443332 2222 2567778888875432 23333333344566764 47999997
No 416
>PRK12289 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00012 Score=73.13 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++|+|++|+|||||+|+|+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcC
Confidence 479999999999999999963
No 417
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.00039 Score=66.82 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCcCc----HHHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f----~~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.+.|+||||...+ +..+... ...+|-.+||+||+... .+..+.+......++.. +++||+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 568999999996643 3333322 23678899999998643 34555656666678875 47999997
Q ss_pred C
Q 011837 196 H 196 (476)
Q Consensus 196 ~ 196 (476)
.
T Consensus 224 t 224 (270)
T PRK06731 224 T 224 (270)
T ss_pred C
Confidence 3
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.00067 Score=69.73 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCCcCc-------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f-------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
.++.+.||||||+..+ +..++......+-..||++++.+. ....+.+......++.. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 3578999999997544 222222222445778999998764 24445555555666653 579999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 97
No 419
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00037 Score=64.03 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|.++|+--+|||++-....++..- + ++.-.|....+|.+-.. -.=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP--n------------------------eTlflESTski~~d~is----~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP--N------------------------ETLFLESTSKITRDHIS----NSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC--C------------------------ceeEeeccCcccHhhhh----hhhcce
Confidence 45999999999999998766432210 0 00111111112222111 111457
Q ss_pred EEEeCCCCcCcHHHHh---hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEEccCCCCcC
Q 011837 126 TILDAPGHKSYVPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 199 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~---~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~---~iIvviNK~Dl~~~~ 199 (476)
.+||-||+-+|..... .-.+.+-+.++||||.+.-+| +-++.|+..+++.++. .+=|.|-|.|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 8999999988754432 235678899999999987764 6788899999987643 266899999975433
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~ 235 (476)
..-+.-..+.+...+-++..|.. +-.+.+..+|-.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIy 186 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIY 186 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeec
Confidence 33333344555556666666654 223445555543
No 420
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.45 E-value=0.00017 Score=68.75 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|++|+|||||+|+|+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999964
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.45 E-value=0.00055 Score=70.13 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCcCcHHHHhh------hccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~------~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.|+||||...+-...+. ....+|.++||+|+..+. ...+++.... ..++.. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---------~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---------DAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---------HHHHHHHHHHhhCCCCE--EEEeCc
Confidence 4567999999995433222221 133689999999998652 3444444333 457753 469999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|-
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 95
No 422
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.45 E-value=0.00016 Score=72.83 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=51.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.++.++|.+|+|||||+|+|+....... +........|.|.+..... . +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~--~-~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIP--L-DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEE--e-CCCC
Confidence 5899999999999999999975322100 0001123467777755433 2 2346
Q ss_pred EEEeCCCCcCcH--HHHhh--------hccccCEEEEEEECCCCccc
Q 011837 126 TILDAPGHKSYV--PNMIS--------GASQADIGVLVISARKGEFE 162 (476)
Q Consensus 126 ~liDtPGh~~f~--~~~~~--------~~~~aD~avlVVda~~g~~e 162 (476)
.++||||-..-. ..++. --.......+.++..+..+-
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ 253 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFL 253 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEE
Confidence 799999943221 11111 11234566677776665543
No 423
>PRK01889 GTPase RsgA; Reviewed
Probab=97.45 E-value=0.00053 Score=68.98 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=53.9
Q ss_pred ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc
Q 011837 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 223 (476)
+++.|.+++|+++..+. + .......+..+...|++ .++|+||+||. +..+ +..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~-----~-~~~ldr~L~~a~~~~i~-piIVLNK~DL~--~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDF-----N-LRRIERYLALAWESGAE-PVIVLTKADLC--EDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCC-----C-hhHHHHHHHHHHHcCCC-EEEEEEChhcC--CCHH----HHHHHHHHh--CC----
Confidence 57899999999997542 2 12455667778889998 57899999994 2111 122333322 22
Q ss_pred CCCeeEEeeecccccccccc
Q 011837 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+++++|+++|.|++++
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 357999999999998874
No 424
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.44 E-value=0.00019 Score=68.57 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+...++-|+|-+|.|||+|++++........ .+ .....+.|+|+.+....--.+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~---------k~----------------a~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK---------KA----------------ARVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc---------cc----------------eeccCCCCceeeehhheEecc
Confidence 45679999999999999999998843222111 00 122347899999887555556
Q ss_pred CeEEEEEeCCC
Q 011837 122 TTRFTILDAPG 132 (476)
Q Consensus 122 ~~~~~liDtPG 132 (476)
...+.++||||
T Consensus 195 rp~vy~iDTPG 205 (335)
T KOG2485|consen 195 RPPVYLIDTPG 205 (335)
T ss_pred CCceEEecCCC
Confidence 67799999999
No 425
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.44 E-value=0.0033 Score=68.57 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=124.9
Q ss_pred EeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCcCccHHHHH
Q 011837 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 206 (476)
Q Consensus 128 iDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN-K~Dl~~~~~~~~~~~ 206 (476)
-|+-|...-+.+.+..+....+-+=|+.+.-|. -+...+.++...+- +|+..| |.+.
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~---------it~~Dv~lA~~~~a--~ii~Fnv~~~~----------- 606 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGE---------VTETDVEFASTTNA--EILAFNTNLAP----------- 606 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCC---------CCHHHHHHHHhcCC--EEEEeeCCCCH-----------
Confidence 799998888888888887778888888888774 57777788887764 566766 2221
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEEc-c
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-D 285 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~~-~ 285 (476)
.+....+.. ++.+..-+- |-++.+. +.+++..+-.|.......-+..|..+|+ .
T Consensus 607 ----~~~~~a~~~------~v~i~~~~i-----IY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~ 661 (742)
T CHL00189 607 ----GAKKAARKL------NIIIKEYQV-----IYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVFPLA 661 (742)
T ss_pred ----HHHHHHHHc------CCEEEEeCh-----HHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEEecC
Confidence 122223332 334433221 1221111 3334444433444333445677888884 3
Q ss_pred CCeEEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 286 MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 286 ~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
.|.++.++|.+|.|+.|..++++..+. ..+|.||+++.+++.++..|.-||+.+.+. .+++.||+|-.
T Consensus 662 k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 662 KRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred CCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 489999999999999999999998875 357999999999999999999999999965 56999999854
No 426
>PRK12288 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00067 Score=67.82 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=52.0
Q ss_pred ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCc
Q 011837 144 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 223 (476)
Q Consensus 144 ~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 223 (476)
++++|.+++|.+..... +. ....+.+..+...++| +++|+||+|+... .....+ ......+..+|
T Consensus 118 aANvD~vlIV~s~~p~~-----s~-~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~----~~~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL-----SL-NIIDRYLVACETLGIE-PLIVLNKIDLLDD----EGRAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCC-----CH-HHHHHHHHHHHhcCCC-EEEEEECccCCCc----HHHHHH-HHHHHHHHhCC---
Confidence 57899999998875432 11 2334445566677888 6789999999422 111112 22222334443
Q ss_pred CCCeeEEeeecccccccccc
Q 011837 224 KKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 224 ~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++++||++|.|++++
T Consensus 183 ---~~v~~vSA~tg~GideL 199 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEEL 199 (347)
T ss_pred ---CeEEEEeCCCCcCHHHH
Confidence 47999999999999884
No 427
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.44 E-value=0.00043 Score=69.10 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCC
Q 011837 123 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~ 158 (476)
..+.++|.||-.. .....+.-++.+|+.++||++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999432 44456666889999999999864
No 428
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.44 E-value=0.00032 Score=69.99 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchH-----------HHHHHHHHHhhcCccchhhhhhcCCchhhhccccEE
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR-----------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~-----------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti 111 (476)
.+...|+++|+.|+||||.+-.|.+........ .+...++- ..|+.+| |+.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL--------k~Ya~im---------~vp~ 263 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL--------KTYADIM---------GVPL 263 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH--------HHHHHHh---------CCce
Confidence 347899999999999999999886543311110 00000000 0122222 2333
Q ss_pred eeeeEE-------EEeCCeEEEEEeCCCCcCcHHHHhh----hc--cccCEEEEEEECCCCccccccCCCCchHHHHHHH
Q 011837 112 EVGRAH-------FETETTRFTILDAPGHKSYVPNMIS----GA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLA 178 (476)
Q Consensus 112 ~~~~~~-------~~~~~~~~~liDtPGh~~f~~~~~~----~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~ 178 (476)
...... ....++.+.|+||.|+..+-...+. .+ ....-.-||++|+.-- ...++.+...
T Consensus 264 ~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHh
Confidence 332211 1124578999999997665333322 22 2345667888887643 3566677777
Q ss_pred HHcCCceEEEEEEccCCC
Q 011837 179 KTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 179 ~~l~i~~iIvviNK~Dl~ 196 (476)
...++..+ .+||+|-.
T Consensus 336 ~~~~i~~~--I~TKlDET 351 (407)
T COG1419 336 SLFPIDGL--IFTKLDET 351 (407)
T ss_pred ccCCccee--EEEccccc
Confidence 78888865 58999974
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0012 Score=68.35 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=40.6
Q ss_pred EeCCeEEEEEeCCCCcCcHHHH------hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 119 ETETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~------~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
...++.+.+|||+|.......+ +.......-.+||+|+..+. ....+.+......++.. +++||
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTK 400 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTK 400 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeC
Confidence 3456679999999943322211 11112234478999998764 23444455555666664 46899
Q ss_pred cCC
Q 011837 193 MDD 195 (476)
Q Consensus 193 ~Dl 195 (476)
+|-
T Consensus 401 lDe 403 (484)
T PRK06995 401 LDE 403 (484)
T ss_pred CCC
Confidence 996
No 430
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.43 E-value=0.0036 Score=68.82 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=121.7
Q ss_pred EeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCcCccHHHHH
Q 011837 128 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERYD 206 (476)
Q Consensus 128 iDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN-K~Dl~~~~~~~~~~~ 206 (476)
-|+-|..+-+...+..++.-+.-+=|+.+.-|. -+..-+.++...+- +|+..| |.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~---------it~~Dv~la~~~~a--~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA---------ITESDVTLAAASNA--IIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC---------CCHHHHHHHHhcCC--EEEEEcCCCCH-----------
Confidence 688888777888888887778888888887774 56666777777653 556666 3331
Q ss_pred HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEEc--
Q 011837 207 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK-- 284 (476)
Q Consensus 207 ~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~~-- 284 (476)
.+....+.. ++.+..-+- |-++.+. +.+++..+-.|.....---...|..+|+
T Consensus 652 ----~~~~~a~~~------~v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~ 706 (787)
T PRK05306 652 ----KARKLAEQE------GVDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKVS 706 (787)
T ss_pred ----HHHHHHHHc------CCEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEecC
Confidence 122222222 334433221 1111111 2333443333333333233566778884
Q ss_pred cCCeEEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 285 DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 285 ~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
..|.++.++|..|.|+.|..+++...+. ..+|.||+++.+++.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 707 k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 707 KVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4689999999999999999999998775 568999999999999999999999999976 57999999853
No 431
>PRK13796 GTPase YqeH; Provisional
Probab=97.42 E-value=0.00016 Score=72.92 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=39.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.++.++|.+|+|||||+|+|+.... |. .+.....+.+|+|.+.....+. + ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~-----------------~~--------~~~~~~s~~pGTT~~~~~~~l~--~-~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEIT-----------------GE--------KDVITTSRFPGTTLDKIEIPLD--D-GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhcc-----------------Cc--------cceEEecCCCCccceeEEEEcC--C-Cc
Confidence 5899999999999999999974321 00 0001123457788776554442 2 24
Q ss_pred EEEeCCCC
Q 011837 126 TILDAPGH 133 (476)
Q Consensus 126 ~liDtPGh 133 (476)
.++||||-
T Consensus 213 ~l~DTPGi 220 (365)
T PRK13796 213 FLYDTPGI 220 (365)
T ss_pred EEEECCCc
Confidence 89999995
No 432
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.41 E-value=0.0012 Score=56.97 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=44.0
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl 195 (476)
+.+.++|+|+... ......+..+|.++++++++.... ..+...+..+.. .+..++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7899999998643 334567889999999999876432 233444444433 344457789999985
No 433
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.39 E-value=0.0018 Score=66.11 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=57.0
Q ss_pred ccEEeeeeEEEEe-CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCC---ccccccCCCCchHHHHHHHHH---
Q 011837 108 GKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGFEKGGQTREHVMLAKT--- 180 (476)
Q Consensus 108 g~ti~~~~~~~~~-~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g---~~e~~~~~~~qt~e~l~~~~~--- 180 (476)
..|.-.....|.. .+..+.++|+.|+..-.+.++..+...+++|+||+..+= ..|..- .....+-+.+...
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~--~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN--TNRLHESLNLFESICN 297 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT--SBHHHHHHHHHHHHHT
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch--HHHHHHHHHHHHHHHh
Confidence 3444445556777 889999999999999999999999999999999996531 111100 1233344444433
Q ss_pred ---c-CCceEEEEEEccCC
Q 011837 181 ---L-GVTKLLLVVNKMDD 195 (476)
Q Consensus 181 ---l-~i~~iIvviNK~Dl 195 (476)
+ +.+ +||++||+|+
T Consensus 298 ~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp SGGGTTSE-EEEEEE-HHH
T ss_pred CcccccCc-eEEeeecHHH
Confidence 2 454 9999999997
No 434
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.35 E-value=0.0027 Score=62.83 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+.+-..+.|--|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566789999999999999999853
No 435
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.33 E-value=0.00029 Score=68.73 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|++|+|||||++.|+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999964
No 436
>PRK13796 GTPase YqeH; Provisional
Probab=97.31 E-value=0.0012 Score=66.63 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=57.8
Q ss_pred CcHHHHhhhccccC-EEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHH
Q 011837 135 SYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 213 (476)
Q Consensus 135 ~f~~~~~~~~~~aD-~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~ 213 (476)
+|.+ ++..+..+| .+++|||+.+-. +.....+.... .+.| +++|+||+|+...+.. .+++.+.+.
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~~~---~~~i~~~l~ 123 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKSVK---KNKVKNWLR 123 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCccC---HHHHHHHHH
Confidence 4544 666777666 899999987732 23333333222 2555 8899999999542211 223334444
Q ss_pred HHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 214 PFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 214 ~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+.+..|+. ...++++||++|.|+.++.
T Consensus 124 ~~~k~~g~~---~~~v~~vSAk~g~gI~eL~ 151 (365)
T PRK13796 124 QEAKELGLR---PVDVVLISAQKGHGIDELL 151 (365)
T ss_pred HHHHhcCCC---cCcEEEEECCCCCCHHHHH
Confidence 555666653 1258999999999998853
No 437
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0019 Score=64.83 Aligned_cols=141 Identities=19% Similarity=0.267 Sum_probs=73.8
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCC-------cc-----hHHHHHHHHHHhhcCccchhhhhhcCCchhh
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ-------VD-----DRTIQKYEKEAKDKSRESWYMAYIMDTNEEE 104 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~-------i~-----~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e 104 (476)
+.....+++..|.++|--||||||.++.|.+.... +. ...+.-++.-..+.|-..|. .-....+.+
T Consensus 92 ~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~--~~~~~~Pv~ 169 (451)
T COG0541 92 ELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG--SGTEKDPVE 169 (451)
T ss_pred ccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec--CCCCCCHHH
Confidence 33344567788999999999999999998532211 00 00111112222222211110 000011111
Q ss_pred hccccEEeeeeEEEEeCCeEEEEEeCCCCc----CcHHHH--hhhccccCEEEEEEECCCCccccccCCCCchHHHHH-H
Q 011837 105 RIKGKTVEVGRAHFETETTRFTILDAPGHK----SYVPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-L 177 (476)
Q Consensus 105 ~~~g~ti~~~~~~~~~~~~~~~liDtPGh~----~f~~~~--~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~ 177 (476)
- ..-+...+....+.+.|+||.|.- ..+.++ +.....+|=.+||+||..|- +...... +
T Consensus 170 I-----ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ---------dA~~~A~aF 235 (451)
T COG0541 170 I-----AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ---------DAVNTAKAF 235 (451)
T ss_pred H-----HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch---------HHHHHHHHH
Confidence 0 000111223345789999999933 334333 23456899999999999862 2222322 2
Q ss_pred HHHcCCceEEEEEEccCC
Q 011837 178 AKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 178 ~~~l~i~~iIvviNK~Dl 195 (476)
-..+++. - |++||+|-
T Consensus 236 ~e~l~it-G-vIlTKlDG 251 (451)
T COG0541 236 NEALGIT-G-VILTKLDG 251 (451)
T ss_pred hhhcCCc-e-EEEEcccC
Confidence 2345675 3 58999996
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0038 Score=60.75 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
++.+..|.++|-.|+||||.++.|.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHH
Confidence 345678899999999999999998643
No 439
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.24 E-value=0.0027 Score=62.74 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred ccccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH--
Q 011837 106 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT-- 180 (476)
Q Consensus 106 ~~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~---~e~~~~~~~qt~e~l~~~~~-- 180 (476)
.|-.|.-.....|...+..+-++|.+||..=.+-++.+.-.++++|++++-++-. .|... .....|-+.+...
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~--~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDET--TNRMHESLKLFESIC 255 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccc--hhHHHHHHHHHHHHh
Confidence 4445555666778889999999999999999999999999999999999976421 11000 0122222333222
Q ss_pred -----cCCceEEEEEEccCC
Q 011837 181 -----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 -----l~i~~iIvviNK~Dl 195 (476)
.+.+ +|+++||.|+
T Consensus 256 n~~~F~~ts-iiLFLNK~DL 274 (354)
T KOG0082|consen 256 NNKWFANTS-IILFLNKKDL 274 (354)
T ss_pred cCcccccCc-EEEEeecHHH
Confidence 1344 8999999998
No 440
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0089 Score=61.52 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=63.6
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC-c--eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeE
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-A--QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 352 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~-~--~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 352 (476)
.+..+| +..|.++..+|..|.++.|..+.+.-.+ . ..+|.|++++++++.++.+|+-|++.+.+ ..+++.||+
T Consensus 417 ~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~ 494 (509)
T COG0532 417 EVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDI 494 (509)
T ss_pred EEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCE
Confidence 334444 5689999999999999999999998554 3 37999999999999999999999999997 567899998
Q ss_pred Ee
Q 011837 353 LS 354 (476)
Q Consensus 353 l~ 354 (476)
|-
T Consensus 495 le 496 (509)
T COG0532 495 LE 496 (509)
T ss_pred EE
Confidence 74
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0009 Score=72.63 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=38.8
Q ss_pred CCeEEEEEeCCCCcCcHHHHh------hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEE
Q 011837 121 ETTRFTILDAPGHKSYVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVN 191 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~------~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviN 191 (476)
.++.+.||||||......++. .....++-.+||+|++.+. ....+.+...+. .++.. +++|
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--------~~l~~i~~~f~~~~~~~i~g--lIlT 331 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--------DTLNEVVHAYRHGAGEDVDG--CIIT 331 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--------HHHHHHHHHHhhcccCCCCE--EEEe
Confidence 456799999999332222211 1223577899999998642 122333333332 25664 4699
Q ss_pred ccCCC
Q 011837 192 KMDDH 196 (476)
Q Consensus 192 K~Dl~ 196 (476)
|+|-.
T Consensus 332 KLDEt 336 (767)
T PRK14723 332 KLDEA 336 (767)
T ss_pred ccCCC
Confidence 99973
No 442
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.19 E-value=0.00087 Score=59.94 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.++.+.++|||+... ...... +..+|.+++|+.+..... ..+.+.+..+...+++.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 568899999999642 222222 267899999998876443 467778888888999877789999985
No 443
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.18 E-value=0.0015 Score=59.00 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCcCcHHHH-----hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 123 TRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~-----~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
....||-+.|-.+-..-+ ....-..+..+.|||+..-.. ......+ ....+..-.+ +++||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~~~-~~~Qi~~ADv-IvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIPEL-LREQIAFADV-IVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHCHH-HHHHHCT-SE-EEEE-GGGH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccchhh-hhhcchhcCE-EEEeccccC
Confidence 467889999954443331 112235689999999965311 1222222 2333333334 699999993
No 444
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.17 E-value=0.00082 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...+++++|.+++|||||+++|+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34688999999999999999985
No 445
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.17 E-value=0.0017 Score=62.56 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=59.3
Q ss_pred cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcC
Q 011837 145 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 224 (476)
Q Consensus 145 ~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 224 (476)
...|-+++|+.+..+.|. ..+..+.|.++...|+. .|+++||+|+... +.... ++.......+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~----~~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDLLDD----EEAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEccccCcc----hHHHH--HHHHHHHHhCCe---
Confidence 458899999999988753 24566778888889998 5678999999432 22222 445555666665
Q ss_pred CCeeEEeeecccccccccc
Q 011837 225 KDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 225 ~~~~~ipvSa~~g~~i~~~ 243 (476)
+++.+|+++++|++++
T Consensus 143 ---~v~~~s~~~~~~~~~l 158 (301)
T COG1162 143 ---PVLFVSAKNGDGLEEL 158 (301)
T ss_pred ---eEEEecCcCcccHHHH
Confidence 6899999999999875
No 446
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.16 E-value=0.0029 Score=51.90 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc---eEEEEEEc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~---~iIvviNK 192 (476)
.+.++|||+..... ....+..+|.++++++++.... ..+.+.+..++..+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 78999999976543 4456788999999999887543 3556666666676654 68888886
No 447
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.13 E-value=0.0025 Score=57.45 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=50.0
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
..+.+.++|||+... ......+..+|.+++++.++.... ..+.+.+..++..+++ +.+++||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 568899999997542 345566788999999999886532 3556667777788887 6789999997
No 448
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.12 E-value=0.0011 Score=64.19 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe---
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--- 120 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~--- 120 (476)
+.+.++|+|.+++|||||+++|.. .... .+...-.||+......+.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~--~~a~-----------------------------~~NfPF~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTK--SKAG-----------------------------AANFPFCTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhc--CCCC-----------------------------ccCCCcceeccccceeecCch
Confidence 568999999999999999999832 1111 111122344333322211
Q ss_pred -----------C---CeEEEEEeCCCCc-------CcHHHHhhhccccCEEEEEEECCC
Q 011837 121 -----------E---TTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 121 -----------~---~~~~~liDtPGh~-------~f~~~~~~~~~~aD~avlVVda~~ 158 (476)
. -..+++.|.+|.. -.-...++-++.+|+++-||++..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 1348999999921 233334455788999999999864
No 449
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.04 E-value=0.0036 Score=50.06 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=54.8
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
.|.++. ++.|.+++..|..|+|++||.+..+. ...+|++|... ..++++|.||+.|.+ .|++.. -..|+.+.
T Consensus 4 ~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~~-P~aGd~~~ 78 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKGV-PQAGDKFL 78 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCCCC-CCCCCEEE
Confidence 344444 67899999999999999999999954 45699999987 689999999999986 344321 14455554
No 450
>PRK00098 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.00092 Score=65.63 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|+
T Consensus 165 k~~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999996
No 451
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.95 E-value=0.0021 Score=59.09 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCCcCc------HHHHhhhccccCEEEEEEECCCCccccccC-CCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY------VPNMISGASQADIGVLVISARKGEFETGFE-KGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f------~~~~~~~~~~aD~avlVVda~~g~~e~~~~-~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
....+.++|+||+.++ ....++-+...|+-+.+|.-.+..+-+.-. ......-.+.-+..+..||+ =|+.|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphV-NvlSK~ 173 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHV-NVLSKA 173 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccch-hhhhHh
Confidence 3567899999995443 556666666666666655543333211100 00011111222334578865 689999
Q ss_pred CCC
Q 011837 194 DDH 196 (476)
Q Consensus 194 Dl~ 196 (476)
|+.
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 984
No 452
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0038 Score=61.48 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=42.5
Q ss_pred EEeCCeEEEEEeCCCCc----CcHHHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHH--HHcCCceEEEE
Q 011837 118 FETETTRFTILDAPGHK----SYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA--KTLGVTKLLLV 189 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~----~f~~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~--~~l~i~~iIvv 189 (476)
|.-++..+.|+||.|.. ....+|+.. +-.+|-+|+|+||.-| |..+....+ ...++- -|+
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 44467889999999922 234455443 3469999999999876 544432221 123444 357
Q ss_pred EEccCC
Q 011837 190 VNKMDD 195 (476)
Q Consensus 190 iNK~Dl 195 (476)
+||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999995
No 453
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.92 E-value=0.033 Score=56.00 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=26.0
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+....+...+-|+++|+|-+||||++.++...
T Consensus 9 DIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 9 DIAERTGGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred HHHHhcCCceEEEeecCcccCchhHHHHHHHH
Confidence 34445667789999999999999999998543
No 454
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.91 E-value=0.0049 Score=62.87 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=25.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i 72 (476)
--..+|+|+|+.++|||||+++|....|..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 346799999999999999999998776654
No 455
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.017 Score=56.13 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----------------CCceEEEEEEccCCCCcCcc
Q 011837 138 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----------------GVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 138 ~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l----------------~i~~iIvviNK~Dl~~~~~~ 201 (476)
..|..-+..|+.+|+|+|.-.. .+....+..+..+ -.|+++++-||.-. .|+.
T Consensus 290 ~~~AfLl~VcHivivV~d~~~d---------~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf~ 358 (491)
T KOG4181|consen 290 GTMAFLLSVCHIVIVVIDGLAD---------EQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDFE 358 (491)
T ss_pred HHHHHHHHHhhEEEEEecchhH---------HHHHHHHHHHHhhCcccCccccccccccccCcceEEEeccccc--cccC
Confidence 3344446789999999986543 2443444433332 15678999999877 5555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011837 202 KERYDEIESKMTPFLKA 218 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~ 218 (476)
....+++-..+..+++.
T Consensus 359 pr~rerl~~~~~~l~~~ 375 (491)
T KOG4181|consen 359 PRQRERLDKKLAYLYGP 375 (491)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 54455555555555443
No 456
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.87 E-value=0.011 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.+-..+.|--|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 455678999999999999999853
No 457
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.86 E-value=0.0041 Score=63.47 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=49.7
Q ss_pred ccccEEeeeeEEEEeCC---eEEEEEeCCCC-------------cCcHHHHhhhccccCEEEEEEECCCCccccccCCCC
Q 011837 106 IKGKTVEVGRAHFETET---TRFTILDAPGH-------------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGG 169 (476)
Q Consensus 106 ~~g~ti~~~~~~~~~~~---~~~~liDtPGh-------------~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~ 169 (476)
..|.|+......+...+ .++.|+|.||- .+........+..++++||+|- +|...+.- .
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAER---S 466 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAER---S 466 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhh---h
Confidence 34556655555554443 57899999992 1223334455788999999974 33321100 0
Q ss_pred chHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 170 QTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 170 qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
..-.....+.-.|.. -|+|++|+|++..
T Consensus 467 nVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 467 IVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred hHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 111122333345665 6789999999543
No 458
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.86 E-value=0.0025 Score=63.13 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=58.9
Q ss_pred ccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCc---cccccCCCCchHHHHHHHHH----
Q 011837 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT---- 180 (476)
Q Consensus 108 g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~---~e~~~~~~~qt~e~l~~~~~---- 180 (476)
..|.......|..++..+.++|++|+....+.+......++++++|||.++-. .|... .....+.+.....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICNS 223 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHhC
Confidence 34444445567778899999999999999999999999999999999987521 01000 0122333333322
Q ss_pred ---cCCceEEEEEEccCC
Q 011837 181 ---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 181 ---l~i~~iIvviNK~Dl 195 (476)
.+.| ++++.||.|+
T Consensus 224 ~~~~~~p-ill~~NK~D~ 240 (317)
T cd00066 224 RWFANTS-IILFLNKKDL 240 (317)
T ss_pred ccccCCC-EEEEccChHH
Confidence 3566 9999999997
No 459
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.80 E-value=0.0087 Score=47.94 Aligned_cols=57 Identities=21% Similarity=0.389 Sum_probs=48.1
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEE
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLR 336 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~ 336 (476)
.|.++- ++.|.+++..|.+|+|++||.+.. +....+|+++... ++.+.+|.|++.|.
T Consensus 4 ~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~--G~~~GkVr~~~d~~g~~v~~a~Ps~~v~ 63 (95)
T cd03701 4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVA--GGTYGKIRTMVDENGKALLEAGPSTPVE 63 (95)
T ss_pred EEEEEEecCCCCeeEEEEEEcCeEecCCEEEE--CCccceEEEEECCCCCCccccCCCCCEE
Confidence 344443 678999999999999999999999 4556799999886 67899999999985
No 460
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.72 E-value=0.0058 Score=60.31 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=49.7
Q ss_pred eEEEEEeCCCCcCcHHHH--------hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVPNM--------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~--------~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
....+|-|-|-.+=.+-+ +......|.+|-||||..... ......-..-..+..-- ++++||.|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~-------~~~~~~~~~~~Qia~AD-~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE-------GLDAIAELAEDQLAFAD-VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh-------hHHHHHHHHHHHHHhCc-EEEEeccc
Confidence 457889999954432222 222335688999999987541 11100111112222222 46999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeec
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 234 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa 234 (476)
+... +..+.+. ..++.+ ++..+++..|.
T Consensus 157 lv~~----~~l~~l~----~~l~~l----np~A~i~~~~~ 184 (323)
T COG0523 157 LVDA----EELEALE----ARLRKL----NPRARIIETSY 184 (323)
T ss_pred CCCH----HHHHHHH----HHHHHh----CCCCeEEEccc
Confidence 9432 2343333 344443 24678888876
No 461
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.65 E-value=0.0079 Score=48.86 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE 160 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~ 160 (476)
+.+.++|+|+...-. ....+..+|.++++++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~s 75 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPLD 75 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHHH
Confidence 679999999965432 336678899999999987643
No 462
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.56 E-value=0.052 Score=58.17 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=59.8
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCEEEEecCC-ceEEEEEEEECCeeeeecCCCCeEEEEEeccCc-cCceeeeEEec
Q 011837 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 355 (476)
Q Consensus 281 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 355 (476)
.+|+ ..+.++..+|..|.|+.|..|. .+++ ...+|.||+++++++++|..|+-|+|.+.+..- .++..||+|..
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 4563 3478888999999999999874 3333 457899999999999999999999999987422 57899999865
No 463
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.55 E-value=0.02 Score=46.78 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=55.7
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCc--eEEEEEEEECCe-----------eeeecCCCCeEEEEEecc
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA--QVKVLAIYCDDN-----------RVRHAGPGENLRIRLSGI 342 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~--~~~V~si~~~~~-----------~v~~a~aG~~v~l~l~~~ 342 (476)
.|.++- ++.|.++.-.|++|+|+.||.|.++..+- ..+|++|...+. +++++.|..-+-+...++
T Consensus 4 tVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 4 TVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 455554 68999999999999999999999977653 469999987643 788888666666655655
Q ss_pred CccCceeeeEEe
Q 011837 343 EEEDILSGFVLS 354 (476)
Q Consensus 343 ~~~~i~~G~vl~ 354 (476)
+. +..|+-+.
T Consensus 84 ~~--v~aG~~~~ 93 (110)
T cd03703 84 EK--AIAGSPLL 93 (110)
T ss_pred cc--ccCCCEEE
Confidence 44 45566543
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.48 E-value=0.023 Score=44.80 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.5
Q ss_pred EEEEEeCCCCcCcHHH-HhhhccccCEEEEEEECCCCc
Q 011837 124 RFTILDAPGHKSYVPN-MISGASQADIGVLVISARKGE 160 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~-~~~~~~~aD~avlVVda~~g~ 160 (476)
.+.++|+|+....... .......+|.++++++.....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 7899999996654432 245567899999999987654
No 465
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.39 E-value=0.009 Score=42.48 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=25.8
Q ss_pred HHhhhcc-ccCEEEEEEECCCCccccccCCCCchHHHHHHHH----Hc-CCceEEEEEEccC
Q 011837 139 NMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TL-GVTKLLLVVNKMD 194 (476)
Q Consensus 139 ~~~~~~~-~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l-~i~~iIvviNK~D 194 (476)
..+.+++ .++++++++|.++.. |++ ..+.+.+.+ .. +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~C---Gys----ie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQC---GYS----IEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TT---SS-----HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCC---CCC----HHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 4556654 789999999998743 222 233333322 23 566 999999998
No 466
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.35 E-value=0.0071 Score=70.24 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.7
Q ss_pred eEEEEEecCCCChHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQ 64 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~ 64 (476)
+=..|+|++|+||||++.+
T Consensus 112 PWYlviG~~gsGKtt~l~~ 130 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQN 130 (1169)
T ss_pred CCEEEECCCCCchhHHHHh
Confidence 5678999999999999864
No 467
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.014 Score=52.28 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+..+.++|+|..|||||||+.+|+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3456789999999999999999963
No 468
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.11 E-value=0.0044 Score=61.29 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=41.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++++|+|-+|.|||++++.|..... .......|+|..+-.+. -+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~------------------------------C~vg~~pGvT~smqeV~---Ld 296 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA------------------------------CNVGNVPGVTRSMQEVK---LD 296 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc------------------------------ccCCCCccchhhhhhee---cc
Confidence 6789999999999999999999964321 11222455665554443 24
Q ss_pred eEEEEEeCCCC
Q 011837 123 TRFTILDAPGH 133 (476)
Q Consensus 123 ~~~~liDtPGh 133 (476)
..+.|+|+||-
T Consensus 297 k~i~llDsPgi 307 (435)
T KOG2484|consen 297 KKIRLLDSPGI 307 (435)
T ss_pred CCceeccCCce
Confidence 77999999993
No 469
>PRK13695 putative NTPase; Provisional
Probab=95.95 E-value=0.022 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+|+++|.+|+|||||+..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998753
No 470
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.94 E-value=0.022 Score=51.14 Aligned_cols=41 Identities=24% Similarity=0.129 Sum_probs=27.9
Q ss_pred CEEEEEEECCCCccccccCCCCchHHHHHH--HHHcCCceEEEEEEccCCC
Q 011837 148 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 148 D~avlVVda~~g~~e~~~~~~~qt~e~l~~--~~~l~i~~iIvviNK~Dl~ 196 (476)
|++++|+||..... ....+.... +...+.| +|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhcC
Confidence 78999999988642 233333333 3334566 78999999993
No 471
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.85 E-value=0.058 Score=56.04 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=79.4
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeee
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR 115 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~ 115 (476)
...+..+++...+-++|.-++|||.|+..++. +.+++ ..........+++...
T Consensus 416 ~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflg--r~~~~-------------------------~~~~~~~~~~avn~v~ 468 (625)
T KOG1707|consen 416 RKKKQTDRKVFQCFVVGPKNCGKSALLQSFLG--RSMSD-------------------------NNTGTTKPRYAVNSVE 468 (625)
T ss_pred hccccccceeeeEEEEcCCcCchHHHHHHHhc--ccccc-------------------------ccccCCCCceeeeeee
Confidence 34445556678889999999999999999853 11111 0000111222333322
Q ss_pred EEEEeCCeEEEEEeCCCC-cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HH-cCCceEEEE
Q 011837 116 AHFETETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KT-LGVTKLLLV 189 (476)
Q Consensus 116 ~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~-l~i~~iIvv 189 (476)
.. ...+.+.|-|.+-. .++..+- =..||++.++.|.... ...+++... .. .++| ++.|
T Consensus 469 ~~--g~~k~LiL~ei~~~~~~~l~~k---e~~cDv~~~~YDsS~p----------~sf~~~a~v~~~~~~~~~~P-c~~v 532 (625)
T KOG1707|consen 469 VK--GQQKYLILREIGEDDQDFLTSK---EAACDVACLVYDSSNP----------RSFEYLAEVYNKYFDLYKIP-CLMV 532 (625)
T ss_pred ec--cccceEEEeecCccccccccCc---cceeeeEEEecccCCc----------hHHHHHHHHHHHhhhccCCc-eEEE
Confidence 22 33345566665542 1222221 1679999999998743 223332221 11 4577 8889
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 235 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~ 235 (476)
.+|+|+.... ++..-+-.++..++++. +-+++|..
T Consensus 533 a~K~dlDe~~------Q~~~iqpde~~~~~~i~-----~P~~~S~~ 567 (625)
T KOG1707|consen 533 ATKADLDEVP------QRYSIQPDEFCRQLGLP-----PPIHISSK 567 (625)
T ss_pred eeccccchhh------hccCCChHHHHHhcCCC-----CCeeeccC
Confidence 9999994321 11212225566676765 33566654
No 472
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.83 E-value=0.2 Score=53.89 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=58.3
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCEEEEecCC-ceEEEEEEEECCeeeeecCCCCeEEEEEeccCc-cCceeeeEEec
Q 011837 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 355 (476)
Q Consensus 281 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 355 (476)
.+|+ ..+.++..+|..|.|+.|..|. .+.+ ...+|.||++++++|+++..|+-|+|.+.+..- .++..||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 3477888999999999999854 3243 346899999999999999999999999986521 46888888754
No 473
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.80 E-value=0.0033 Score=61.89 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.2
Q ss_pred cccccccCccceeEEEEEecCCCChHHHHHHHH
Q 011837 34 SQQETEGNNKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 34 ~~~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.|...-...++.+.|+++|-+|+|||+++|.|.
T Consensus 296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred HHHHhhccCccceeeeeecCCCCchHHHHHHHh
Confidence 344445567888999999999999999999983
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.77 E-value=0.01 Score=43.24 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...|.|+.++|||||++++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 475
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.69 E-value=0.0093 Score=60.85 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.1
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHH
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...+..++|++||-+|+|||++||.|.
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLv 335 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALV 335 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHh
Confidence 334457999999999999999999995
No 476
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.59 E-value=0.013 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.|+|.|.++|||||+...|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999965544
No 477
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.33 E-value=0.022 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...+|.|.|.+||||||++..|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhh
Confidence 468999999999999999999964
No 478
>PRK14845 translation initiation factor IF-2; Provisional
Probab=95.30 E-value=0.33 Score=55.21 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.1
Q ss_pred EEEc-cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccC-ccCceeeeEEec
Q 011837 281 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 355 (476)
Q Consensus 281 ~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~ 355 (476)
.+|+ ..+.++..+|..|.|+.|..|.-..+....+|.||+.+++++++|..|+-|++.+.+.. ..++..||+|-.
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 34788889999999999987743222234789999999999999999999999998743 246888888864
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.11 E-value=0.017 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+--.++++|+.|+|||||++.++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4457899999999999999987543
No 480
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.27 Score=46.89 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHHc-CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeec
Q 011837 176 MLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 234 (476)
Q Consensus 176 ~~~~~l-~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa 234 (476)
.+.+++ --|.+++ ||-+-+..+..+-.++.-.++.+.+++ ++|++.+|-
T Consensus 138 AIGRALLt~P~LLL----mDEPLaSLD~~RK~EilpylERL~~e~------~IPIlYVSH 187 (352)
T COG4148 138 AIGRALLTAPELLL----MDEPLASLDLPRKREILPYLERLRDEI------NIPILYVSH 187 (352)
T ss_pred HHHHHHhcCCCeee----ecCchhhcccchhhHHHHHHHHHHHhc------CCCEEEEec
Confidence 334433 4565554 887767667777777777777776665 468888873
No 481
>PRK07261 topology modulation protein; Provisional
Probab=94.99 E-value=0.023 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.96 E-value=0.026 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999963
No 483
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.96 E-value=0.019 Score=52.57 Aligned_cols=21 Identities=38% Similarity=0.308 Sum_probs=18.7
Q ss_pred eeEEEEEecCCCChHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~L 65 (476)
--.++|+|++|||||||+.+|
T Consensus 28 Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999987
No 484
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.025 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|.|+|++||||||+...|....|.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999999766554
No 485
>PRK08118 topology modulation protein; Reviewed
Probab=94.92 E-value=0.025 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.+|.|+|++|||||||...|-...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999865444
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.91 E-value=0.018 Score=53.62 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.8
Q ss_pred eEEEEEecCCCChHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~L 65 (476)
=-++|+|++|||||||++.+
T Consensus 32 e~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999866
No 487
>PRK01889 GTPase RsgA; Reviewed
Probab=94.86 E-value=0.018 Score=58.04 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.+++++|.+|+|||||++.|+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999964
No 488
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=94.83 E-value=0.38 Score=37.69 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=43.1
Q ss_pred ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEEEe--
Q 011837 379 AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT-- 456 (476)
Q Consensus 379 ~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~-- 456 (476)
.+|+.|...++.+|+..+.++|.++. ++ .+++.|.+|+|.+.. .|.+|-+
T Consensus 25 ~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~Pvc~~~g------~rvaiSRri 76 (88)
T PF09173_consen 25 EPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKKPVCAEKG------ERVAISRRI 76 (88)
T ss_dssp ----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEE-STT------SEEEEEEEE
T ss_pred ccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecCCeEcCcC------Ceeeeehhc
Confidence 67899999999999999999999753 22 366788999999886 3666643
Q ss_pred CC--cEEEEEEE
Q 011837 457 EG--KTVAVGKV 466 (476)
Q Consensus 457 ~~--~tva~G~V 466 (476)
++ |.+|.|.|
T Consensus 77 ~~rWRLIG~G~I 88 (88)
T PF09173_consen 77 GNRWRLIGWGII 88 (88)
T ss_dssp TTSEEEEEEEEE
T ss_pred cCeEEEEEEEeC
Confidence 33 69999986
No 489
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.019 Score=53.76 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~L 65 (476)
-|+++|++|+|||||++.+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999876
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.81 E-value=0.027 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHHhC
Q 011837 48 VVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
|.++|++|||||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999875554
No 491
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.79 E-value=0.024 Score=42.38 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHHHH
Q 011837 48 VVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll 66 (476)
|++.|.+++||||+.+.|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 492
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.77 E-value=0.039 Score=55.13 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.....++.++|++|||||||..-|+..
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 445689999999999999999877543
No 493
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.75 E-value=0.17 Score=47.86 Aligned_cols=136 Identities=19% Similarity=0.306 Sum_probs=74.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchh-hhccccEEeeeeEEEEeCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE-ERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~-e~~~g~ti~~~~~~~~~~~ 122 (476)
-..||.-+|..|-|||||++.|.... . +..+. ....++........+..++
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~-f---------------------------~~~p~~H~~~~V~L~~~TyelqEsn 92 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTK-F---------------------------ESEPSTHTLPNVKLQANTYELQESN 92 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccc-c---------------------------CCCCCccCCCCceeecchhhhhhcC
Confidence 45899999999999999999984311 0 00000 0112222222222222222
Q ss_pred --eEEEEEeCCCCc-------------CcH--------------HHHhhhc--cccCEEEEEEECCCCccccccCCCCch
Q 011837 123 --TRFTILDAPGHK-------------SYV--------------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQT 171 (476)
Q Consensus 123 --~~~~liDtPGh~-------------~f~--------------~~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt 171 (476)
-+++++||.|.- +|+ +.++... +..+++++.|..+.... -
T Consensus 93 vrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L---------K 163 (406)
T KOG3859|consen 93 VRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL---------K 163 (406)
T ss_pred eeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch---------h
Confidence 458999999932 221 1111222 34688999998764321 1
Q ss_pred HHHHHHHHHc--CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 172 REHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 172 ~e~l~~~~~l--~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
...+..++.+ .+. +|-+|-|.|. . +...+...+..+..-|.+-|.
T Consensus 164 slDLvtmk~LdskVN-IIPvIAKaDt--i--sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 164 SLDLVTMKKLDSKVN-IIPVIAKADT--I--SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHHHHHhhhhh-hHHHHHHhhh--h--hHHHHHHHHHHHHHHHHhcCc
Confidence 1112222222 344 6778899998 3 456677777777666666554
No 494
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.71 E-value=0.087 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..||.|.|.+|||||||+++|+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.70 E-value=0.13 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|..|+|||||+.+|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999953
No 496
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.54 E-value=0.068 Score=44.32 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~L 65 (476)
+|+++|..++|||+|+.++
T Consensus 2 kvv~~G~~gvGKt~l~~~~ 20 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARF 20 (124)
T ss_pred EEEEECCCChhHHHHHHHH
Confidence 7899999999999999987
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.50 E-value=0.04 Score=50.99 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
++...|+|+|++|||||||+..|....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999987543
No 498
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.45 E-value=0.8 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=21.7
Q ss_pred CccceeEEEEEecCCCChHHHHHHHH
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...+++.=.+.|--|||||||++.+|
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il 78 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYIL 78 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHH
Confidence 34566666789999999999999986
No 499
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.069 Score=54.20 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=72.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHH------------hCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhcccc
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFL------------SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK 109 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~------------~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ 109 (476)
.+++..|++||-.|+||||-+..+.|= |.....+.++.+..+.... +.+++..-+--+.|-
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl-------~~l~~~~v~lfekGY 447 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERL-------SALHGTMVELFEKGY 447 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHH-------HHhccchhHHHhhhc
Confidence 347799999999999999998877541 1122233333333332221 111221111111111
Q ss_pred EEeeeeE------EEEeCCeEEEEEeCCCCcCcHHHHhhh------ccccCEEEEEEECCCCccccccCCCCchHHHHHH
Q 011837 110 TVEVGRA------HFETETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 110 ti~~~~~------~~~~~~~~~~liDtPGh~~f~~~~~~~------~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
.-+.+.. .-...++.+.||||+|...--...++. +..+|.+++|=.|--|.- ...|.++.=..
T Consensus 448 gkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d-----sv~q~~~fn~a 522 (587)
T KOG0781|consen 448 GKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND-----SVDQLKKFNRA 522 (587)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH-----HHHHHHHHHHH
Confidence 1111110 112246789999999954433333333 357999999977765531 01233332223
Q ss_pred HHHcCCceE--EEEEEccCC
Q 011837 178 AKTLGVTKL--LLVVNKMDD 195 (476)
Q Consensus 178 ~~~l~i~~i--IvviNK~Dl 195 (476)
+....-|+. -++++|+|.
T Consensus 523 l~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 523 LADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred HhcCCCccccceEEEEeccc
Confidence 333332322 258999998
No 500
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.41 E-value=0.068 Score=53.12 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=45.4
Q ss_pred EEEEeCCCCc-CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 125 FTILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 125 ~~liDtPGh~-~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
..-.|-+++. .|.+....-+..+|++|-|+||.+..-..+ .+..+ ..+.+.|-+++|+|+||+|+.+
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~----~~vE~--~V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRC----PEVEE--AVLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCC----hhHHH--HHHhccCCceEEEEeehhccCC
Confidence 3455666654 477788788889999999999998762111 12222 2333456467999999999943
Done!