Query 011837
Match_columns 476
No_of_seqs 314 out of 3177
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 3E-85 1E-89 674.3 52.3 426 40-470 12-438 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 8.8E-81 3E-85 645.9 30.5 425 42-470 40-466 (467)
3 1f60_A Elongation factor EEF1A 100.0 9.6E-77 3.3E-81 614.2 45.3 424 42-472 4-442 (458)
4 1jny_A EF-1-alpha, elongation 100.0 4.4E-76 1.5E-80 606.4 44.9 426 42-472 3-430 (435)
5 3p26_A Elongation factor 1 alp 100.0 5E-76 1.7E-80 613.8 42.6 424 42-471 30-477 (483)
6 3izq_1 HBS1P, elongation facto 100.0 1.1E-75 3.7E-80 623.6 38.6 424 41-470 163-610 (611)
7 3mca_A HBS1, elongation factor 100.0 6.4E-75 2.2E-79 616.1 34.3 417 39-470 171-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 2.4E-70 8.2E-75 563.9 43.6 408 42-468 21-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 7.3E-63 2.5E-67 502.4 38.3 379 43-473 1-389 (397)
10 2c78_A Elongation factor TU-A; 100.0 3.1E-62 1.1E-66 499.5 36.8 385 41-471 7-405 (405)
11 3avx_A Elongation factor TS, e 100.0 4.5E-58 1.5E-62 501.9 37.0 380 41-473 292-680 (1289)
12 1wb1_A Translation elongation 100.0 3.3E-59 1.1E-63 485.4 15.2 370 38-471 12-395 (482)
13 2elf_A Protein translation elo 100.0 1.4E-55 4.6E-60 443.0 33.1 336 47-467 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 4.9E-54 1.7E-58 439.6 38.6 344 41-467 6-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 2.5E-54 8.5E-59 441.3 34.2 343 42-467 5-407 (408)
16 3sjy_A Translation initiation 100.0 1.5E-50 5.1E-55 412.7 36.2 356 41-467 4-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 3.8E-43 1.3E-47 322.9 18.6 199 271-472 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 2.4E-39 8.2E-44 340.1 25.9 279 42-359 28-402 (548)
19 2ywe_A GTP-binding protein LEP 100.0 9.7E-38 3.3E-42 328.8 26.3 268 43-359 4-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 1.2E-36 3.9E-41 321.3 26.6 268 43-359 2-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 7.3E-37 2.5E-41 331.8 21.0 274 43-359 11-406 (709)
22 3j25_A Tetracycline resistance 100.0 5.7E-39 1.9E-43 343.9 -0.1 274 44-358 1-331 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 2.1E-34 7.1E-39 301.1 24.6 276 43-357 11-382 (528)
24 2rdo_7 EF-G, elongation factor 100.0 3E-33 1E-37 302.2 28.3 274 42-358 7-402 (704)
25 2h5e_A Peptide chain release f 100.0 2.9E-33 9.9E-38 292.7 23.9 275 43-357 11-383 (529)
26 1dar_A EF-G, elongation factor 100.0 3.4E-32 1.2E-36 293.7 28.4 275 42-359 9-395 (691)
27 3izy_P Translation initiation 100.0 9.3E-35 3.2E-39 302.4 3.4 252 44-359 3-261 (537)
28 1zo1_I IF2, translation initia 100.0 1.2E-33 4.3E-38 291.6 9.4 248 44-358 3-259 (501)
29 2xex_A Elongation factor G; GT 100.0 2.2E-31 7.4E-36 287.5 26.4 274 42-358 7-394 (693)
30 2dy1_A Elongation factor G; tr 100.0 1.8E-31 6.1E-36 287.1 22.0 271 43-359 7-368 (665)
31 1g7s_A Translation initiation 100.0 1.3E-31 4.3E-36 283.2 17.2 263 43-359 3-330 (594)
32 1n0u_A EF-2, elongation factor 100.0 1.4E-28 4.8E-33 270.7 24.2 290 41-357 15-473 (842)
33 2lkc_A Translation initiation 99.8 1.1E-20 3.9E-25 169.0 8.5 156 42-245 5-163 (178)
34 2hjg_A GTP-binding protein ENG 99.8 1.3E-19 4.5E-24 186.1 11.3 158 43-245 173-341 (436)
35 4dhe_A Probable GTP-binding pr 99.8 7.1E-19 2.4E-23 163.7 12.7 159 42-243 26-201 (223)
36 4dcu_A GTP-binding protein ENG 99.8 4.8E-19 1.7E-23 182.9 12.4 159 42-245 192-361 (456)
37 3iev_A GTP-binding protein ERA 99.8 1.9E-18 6.6E-23 169.2 14.5 155 42-244 7-173 (308)
38 2dyk_A GTP-binding protein; GT 99.8 2.4E-18 8.2E-23 151.1 13.2 144 46-243 2-152 (161)
39 2hxs_A RAB-26, RAS-related pro 99.8 2.8E-18 9.4E-23 153.4 13.7 152 42-243 3-163 (178)
40 4bas_A ADP-ribosylation factor 99.8 3.9E-18 1.3E-22 155.4 14.5 158 39-245 11-181 (199)
41 1wf3_A GTP-binding protein; GT 99.8 3.2E-18 1.1E-22 166.9 14.8 149 43-243 5-163 (301)
42 2efe_B Small GTP-binding prote 99.8 5.1E-18 1.8E-22 152.1 14.5 152 42-243 9-165 (181)
43 1wms_A RAB-9, RAB9, RAS-relate 99.8 7.8E-18 2.7E-22 150.3 15.5 152 42-243 4-164 (177)
44 3tkl_A RAS-related protein RAB 99.8 3.8E-18 1.3E-22 155.1 13.4 154 42-245 13-171 (196)
45 3cph_A RAS-related protein SEC 99.8 3.8E-18 1.3E-22 157.3 13.5 152 43-245 18-174 (213)
46 2h57_A ADP-ribosylation factor 99.8 3.4E-18 1.2E-22 155.0 12.7 155 42-244 18-178 (190)
47 3tw8_B RAS-related protein RAB 99.8 2.9E-18 9.9E-23 153.5 11.9 153 42-244 6-162 (181)
48 1zj6_A ADP-ribosylation factor 99.8 4.9E-18 1.7E-22 153.5 13.2 152 42-243 13-168 (187)
49 2g6b_A RAS-related protein RAB 99.8 7.6E-18 2.6E-22 150.8 14.3 153 42-244 7-165 (180)
50 2bme_A RAB4A, RAS-related prot 99.8 5.2E-18 1.8E-22 152.9 13.3 153 43-245 8-165 (186)
51 1g16_A RAS-related protein SEC 99.8 5.1E-18 1.7E-22 150.3 12.9 149 45-244 3-156 (170)
52 3i8s_A Ferrous iron transport 99.8 2.2E-18 7.7E-23 165.9 11.2 146 44-243 2-159 (274)
53 2y8e_A RAB-protein 6, GH09086P 99.8 5.4E-18 1.8E-22 151.4 12.9 151 43-243 12-167 (179)
54 2fg5_A RAB-22B, RAS-related pr 99.8 5.2E-18 1.8E-22 154.2 13.0 153 43-243 21-176 (192)
55 1upt_A ARL1, ADP-ribosylation 99.8 6.3E-18 2.2E-22 149.9 13.1 151 43-243 5-159 (171)
56 1r2q_A RAS-related protein RAB 99.8 6.9E-18 2.4E-22 149.3 13.3 154 42-243 3-159 (170)
57 3clv_A RAB5 protein, putative; 99.8 9E-18 3.1E-22 153.2 14.5 102 123-244 93-195 (208)
58 3iby_A Ferrous iron transport 99.8 1.6E-18 5.6E-23 165.0 9.5 144 46-243 2-157 (256)
59 1ek0_A Protein (GTP-binding pr 99.7 1.2E-17 4.1E-22 147.7 14.3 155 44-243 2-159 (170)
60 2ew1_A RAS-related protein RAB 99.7 5.6E-18 1.9E-22 155.5 12.3 154 41-245 22-181 (201)
61 2hup_A RAS-related protein RAB 99.7 1.4E-17 4.8E-22 152.6 14.8 155 40-244 24-184 (201)
62 2h17_A ADP-ribosylation factor 99.7 6.2E-18 2.1E-22 152.1 12.2 157 37-243 13-173 (181)
63 2il1_A RAB12; G-protein, GDP, 99.7 7.3E-18 2.5E-22 153.3 12.8 154 42-244 23-181 (192)
64 1z0f_A RAB14, member RAS oncog 99.7 3.4E-18 1.2E-22 152.7 10.4 154 42-243 12-168 (179)
65 3t1o_A Gliding protein MGLA; G 99.7 4.6E-18 1.6E-22 154.4 11.4 160 41-244 10-183 (198)
66 2gf9_A RAS-related protein RAB 99.7 7.9E-18 2.7E-22 152.4 12.8 154 42-244 19-176 (189)
67 2fu5_C RAS-related protein RAB 99.7 4.1E-18 1.4E-22 153.2 10.7 152 43-245 6-163 (183)
68 2oil_A CATX-8, RAS-related pro 99.7 4.8E-18 1.6E-22 154.3 11.1 157 40-244 20-179 (193)
69 4dsu_A GTPase KRAS, isoform 2B 99.7 4.7E-18 1.6E-22 153.3 11.0 151 43-245 2-158 (189)
70 3llu_A RAS-related GTP-binding 99.7 1.2E-17 4.1E-22 152.4 13.7 168 37-243 12-187 (196)
71 3bc1_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 149.8 14.7 153 42-245 8-177 (195)
72 2p5s_A RAS and EF-hand domain 99.7 2.3E-17 8E-22 150.7 15.1 161 41-243 24-187 (199)
73 2a5j_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 152.4 12.1 154 40-244 16-175 (191)
74 1zd9_A ADP-ribosylation factor 99.7 1.5E-17 5E-22 150.7 13.4 154 41-243 18-175 (188)
75 3a1s_A Iron(II) transport prot 99.7 6.3E-18 2.1E-22 161.2 11.4 148 43-244 3-158 (258)
76 1m2o_B GTP-binding protein SAR 99.7 1.7E-17 5.7E-22 150.7 13.6 152 43-243 21-182 (190)
77 1ega_A Protein (GTP-binding pr 99.7 3.7E-18 1.2E-22 166.6 9.8 152 43-244 6-166 (301)
78 1r8s_A ADP-ribosylation factor 99.7 3.1E-17 1.1E-21 144.5 14.9 148 46-243 1-152 (164)
79 1ksh_A ARF-like protein 2; sma 99.7 1E-17 3.5E-22 151.1 12.0 152 43-244 16-171 (186)
80 3k53_A Ferrous iron transport 99.7 4.9E-18 1.7E-22 163.3 10.4 147 44-244 2-157 (271)
81 1kao_A RAP2A; GTP-binding prot 99.7 5.1E-18 1.7E-22 149.5 9.5 149 44-244 2-157 (167)
82 1vg8_A RAS-related protein RAB 99.7 1.9E-17 6.3E-22 152.0 13.6 154 42-245 5-167 (207)
83 1x3s_A RAS-related protein RAB 99.7 1.3E-17 4.6E-22 151.2 12.5 154 42-244 12-169 (195)
84 2fh5_B SR-beta, signal recogni 99.7 1.2E-17 4.1E-22 154.3 12.3 155 42-243 4-206 (214)
85 1z0j_A RAB-22, RAS-related pro 99.7 2E-17 6.7E-22 146.4 13.1 153 43-243 4-159 (170)
86 1u8z_A RAS-related protein RAL 99.7 1.7E-17 5.8E-22 146.3 12.7 150 43-243 2-157 (168)
87 1z08_A RAS-related protein RAB 99.7 8.9E-18 3E-22 148.8 10.8 151 43-243 4-159 (170)
88 3dz8_A RAS-related protein RAB 99.7 6.2E-18 2.1E-22 153.5 9.7 158 40-245 18-178 (191)
89 2ce2_X GTPase HRAS; signaling 99.7 5.4E-17 1.8E-21 142.6 15.4 147 45-243 3-155 (166)
90 2wji_A Ferrous iron transport 99.7 1.5E-17 5.1E-22 147.4 11.7 146 44-243 2-155 (165)
91 2b6h_A ADP-ribosylation factor 99.7 2E-17 7E-22 150.4 12.9 153 41-243 25-181 (192)
92 1z2a_A RAS-related protein RAB 99.7 1.3E-17 4.3E-22 147.4 11.1 150 43-243 3-157 (168)
93 3con_A GTPase NRAS; structural 99.7 3.2E-17 1.1E-21 148.3 14.0 153 40-244 16-174 (190)
94 3pqc_A Probable GTP-binding pr 99.7 2E-17 7E-22 149.9 12.7 152 42-243 20-184 (195)
95 1c1y_A RAS-related protein RAP 99.7 2.6E-17 9E-22 145.2 13.0 152 44-243 2-157 (167)
96 2o52_A RAS-related protein RAB 99.7 9.5E-18 3.2E-22 153.6 10.2 154 42-245 22-180 (200)
97 1zbd_A Rabphilin-3A; G protein 99.7 3.7E-17 1.3E-21 149.6 14.2 154 43-245 6-163 (203)
98 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.6E-17 5.6E-22 149.4 11.6 154 43-243 3-170 (186)
99 3qq5_A Small GTP-binding prote 99.7 2.8E-18 9.7E-23 174.1 7.3 148 42-243 31-186 (423)
100 1ky3_A GTP-binding protein YPT 99.7 1.4E-17 4.8E-22 149.1 11.0 153 42-244 5-169 (182)
101 2a9k_A RAS-related protein RAL 99.7 2.3E-17 7.9E-22 148.4 12.4 153 41-244 14-172 (187)
102 2bov_A RAla, RAS-related prote 99.7 3.5E-17 1.2E-21 149.9 13.8 154 41-245 10-169 (206)
103 4gzl_A RAS-related C3 botulinu 99.7 1.6E-17 5.3E-22 152.7 11.3 155 42-243 27-195 (204)
104 2bcg_Y Protein YP2, GTP-bindin 99.7 1.3E-17 4.6E-22 153.1 10.6 153 43-245 6-163 (206)
105 1moz_A ARL1, ADP-ribosylation 99.7 1.1E-17 3.6E-22 150.4 9.6 152 43-244 16-171 (183)
106 2nzj_A GTP-binding protein REM 99.7 2.7E-17 9.2E-22 146.4 12.1 152 43-244 2-160 (175)
107 1mky_A Probable GTP-binding pr 99.7 6.2E-17 2.1E-21 166.3 16.4 147 46-245 2-158 (439)
108 1z06_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 148.0 13.1 153 40-243 15-178 (189)
109 1fzq_A ADP-ribosylation factor 99.7 7.8E-17 2.7E-21 145.1 14.9 151 43-243 14-168 (181)
110 2erx_A GTP-binding protein DI- 99.7 7.6E-17 2.6E-21 142.8 14.6 150 44-243 2-157 (172)
111 1svi_A GTP-binding protein YSX 99.7 3.6E-17 1.2E-21 148.6 12.7 153 42-243 20-185 (195)
112 1f6b_A SAR1; gtpases, N-termin 99.7 3.1E-17 1.1E-21 150.0 12.2 152 43-243 23-189 (198)
113 2gf0_A GTP-binding protein DI- 99.7 8.9E-17 3.1E-21 146.3 15.1 151 43-243 6-161 (199)
114 3t5g_A GTP-binding protein RHE 99.7 1.4E-17 4.8E-22 149.4 9.5 152 43-245 4-161 (181)
115 2f7s_A C25KG, RAS-related prot 99.7 3.6E-17 1.2E-21 151.4 12.5 153 42-245 22-191 (217)
116 2x77_A ADP-ribosylation factor 99.7 1.6E-17 5.3E-22 150.4 9.5 152 43-244 20-175 (189)
117 3kkq_A RAS-related protein M-R 99.7 4.5E-17 1.6E-21 146.3 12.3 152 41-244 14-173 (183)
118 3cpj_B GTP-binding protein YPT 99.7 2E-17 6.8E-22 154.2 10.2 151 43-244 11-167 (223)
119 2fn4_A P23, RAS-related protei 99.7 2.2E-17 7.7E-22 147.6 10.0 152 42-245 6-164 (181)
120 3oes_A GTPase rhebl1; small GT 99.7 2.9E-17 9.8E-22 150.4 10.5 156 41-245 20-179 (201)
121 2atx_A Small GTP binding prote 99.7 8E-17 2.7E-21 146.3 13.2 158 42-243 15-183 (194)
122 2j1l_A RHO-related GTP-binding 99.7 4.7E-17 1.6E-21 150.6 11.4 156 42-244 31-200 (214)
123 3reg_A RHO-like small GTPase; 99.7 6.4E-17 2.2E-21 147.0 12.0 157 40-244 18-179 (194)
124 2gco_A H9, RHO-related GTP-bin 99.7 5.3E-17 1.8E-21 148.7 11.4 159 42-244 22-191 (201)
125 2xtp_A GTPase IMAP family memb 99.7 2.1E-17 7.1E-22 157.8 8.9 160 42-245 19-200 (260)
126 2wjg_A FEOB, ferrous iron tran 99.7 4E-17 1.4E-21 147.4 10.0 147 44-244 6-160 (188)
127 3o47_A ADP-ribosylation factor 99.7 9.4E-17 3.2E-21 158.6 13.3 153 42-244 162-318 (329)
128 3q72_A GTP-binding protein RAD 99.7 9.2E-17 3.1E-21 141.7 11.7 150 45-244 2-155 (166)
129 3q85_A GTP-binding protein REM 99.7 1.1E-16 3.6E-21 141.8 12.1 149 45-244 2-158 (169)
130 2hjg_A GTP-binding protein ENG 99.7 1.9E-17 6.5E-22 170.0 8.1 144 46-243 4-155 (436)
131 4dkx_A RAS-related protein RAB 99.7 1.6E-16 5.3E-21 147.4 13.4 151 43-244 11-167 (216)
132 3gj0_A GTP-binding nuclear pro 99.7 4.4E-17 1.5E-21 151.5 9.7 155 40-244 10-166 (221)
133 4djt_A GTP-binding nuclear pro 99.7 2.6E-17 9E-22 152.5 8.1 154 42-245 8-167 (218)
134 2yc2_C IFT27, small RAB-relate 99.7 6.9E-17 2.4E-21 148.0 10.7 155 42-245 17-184 (208)
135 2fv8_A H6, RHO-related GTP-bin 99.7 1.6E-16 5.4E-21 146.2 13.1 159 42-244 22-191 (207)
136 1mky_A Probable GTP-binding pr 99.7 1.2E-16 4E-21 164.2 13.0 158 43-245 178-347 (439)
137 2qu8_A Putative nucleolar GTP- 99.7 5.6E-16 1.9E-20 144.8 16.2 160 43-245 27-197 (228)
138 3r7w_A Gtpase1, GTP-binding pr 99.7 2.4E-16 8.1E-21 154.3 14.0 161 45-243 3-171 (307)
139 3gee_A MNME, tRNA modification 99.7 2.3E-16 8E-21 162.6 14.6 150 43-244 231-389 (476)
140 3bwd_D RAC-like GTP-binding pr 99.7 4E-17 1.4E-21 146.3 7.8 156 43-243 6-171 (182)
141 3b1v_A Ferrous iron uptake tra 99.7 5.4E-17 1.9E-21 155.8 9.0 144 45-243 3-154 (272)
142 2j0v_A RAC-like GTP-binding pr 99.7 9.9E-17 3.4E-21 147.9 10.1 155 43-244 7-171 (212)
143 2gj8_A MNME, tRNA modification 99.7 2E-16 7E-21 141.2 11.3 143 44-243 3-156 (172)
144 2q3h_A RAS homolog gene family 99.7 2.9E-16 1E-20 143.4 12.5 157 41-244 16-186 (201)
145 3l0i_B RAS-related protein RAB 99.7 4.3E-18 1.5E-22 155.7 -0.4 152 42-243 30-186 (199)
146 3q3j_B RHO-related GTP-binding 99.7 4.3E-16 1.5E-20 144.3 13.0 163 36-244 18-194 (214)
147 3lxw_A GTPase IMAP family memb 99.7 6.1E-16 2.1E-20 146.5 13.4 156 42-243 18-198 (247)
148 2atv_A RERG, RAS-like estrogen 99.7 1.3E-15 4.5E-20 138.6 14.4 151 43-244 26-182 (196)
149 3ihw_A Centg3; RAS, centaurin, 99.6 7.8E-16 2.7E-20 138.9 12.5 151 40-244 15-171 (184)
150 3c5c_A RAS-like protein 12; GD 99.6 5.2E-16 1.8E-20 140.4 11.3 154 39-243 15-176 (187)
151 3cbq_A GTP-binding protein REM 99.6 1E-15 3.5E-20 139.5 13.1 153 41-244 19-179 (195)
152 4dcu_A GTP-binding protein ENG 99.6 1.7E-16 5.7E-21 163.9 8.8 149 41-243 19-175 (456)
153 1m7b_A RND3/RHOE small GTP-bin 99.6 1.4E-15 4.7E-20 137.0 13.5 155 42-243 4-173 (184)
154 3lvq_E ARF-GAP with SH3 domain 99.6 6.4E-16 2.2E-20 161.4 12.9 153 42-244 319-475 (497)
155 3th5_A RAS-related C3 botulinu 99.4 2E-17 7E-22 151.7 0.0 160 42-245 27-197 (204)
156 2iwr_A Centaurin gamma 1; ANK 99.6 5.5E-15 1.9E-19 132.0 15.2 149 43-245 5-161 (178)
157 1gwn_A RHO-related GTP-binding 99.6 2.4E-15 8.3E-20 138.2 12.0 156 42-244 25-195 (205)
158 3t5d_A Septin-7; GTP-binding p 99.6 3.6E-15 1.2E-19 143.5 13.5 158 44-243 7-194 (274)
159 1xzp_A Probable tRNA modificat 99.6 1.9E-15 6.4E-20 156.0 11.8 147 44-245 242-397 (482)
160 3lxx_A GTPase IMAP family memb 99.6 4.8E-15 1.6E-19 139.6 12.9 160 40-243 24-204 (239)
161 1nrj_B SR-beta, signal recogni 99.6 2.1E-15 7.3E-20 139.5 10.3 151 42-240 9-171 (218)
162 2cxx_A Probable GTP-binding pr 99.6 1.3E-15 4.3E-20 137.5 8.4 154 46-244 2-175 (190)
163 2wkq_A NPH1-1, RAS-related C3 99.6 2.9E-15 1E-19 147.6 11.0 157 43-243 153-320 (332)
164 3geh_A MNME, tRNA modification 99.6 1.6E-15 5.5E-20 155.8 9.0 146 43-244 222-375 (462)
165 2qtf_A Protein HFLX, GTP-bindi 99.6 8.7E-15 3E-19 146.1 12.5 155 44-244 178-345 (364)
166 2zej_A Dardarin, leucine-rich 99.6 4.6E-15 1.6E-19 133.7 9.2 158 45-243 2-168 (184)
167 1h65_A Chloroplast outer envel 99.6 3.3E-14 1.1E-18 136.4 15.7 119 42-197 36-168 (270)
168 1lnz_A SPO0B-associated GTP-bi 99.6 3E-15 1E-19 148.0 6.9 152 45-245 158-322 (342)
169 2g3y_A GTP-binding protein GEM 99.5 2.5E-14 8.4E-19 132.1 11.0 154 42-245 34-195 (211)
170 3def_A T7I23.11 protein; chlor 99.5 2.9E-14 9.9E-19 136.2 11.7 119 42-196 33-164 (262)
171 2e87_A Hypothetical protein PH 99.5 8.6E-14 2.9E-18 139.0 14.0 153 43-245 165-328 (357)
172 2cjw_A GTP-binding protein GEM 99.5 8.8E-14 3E-18 126.3 11.6 154 43-245 4-164 (192)
173 3dpu_A RAB family protein; roc 99.5 1.9E-14 6.4E-19 151.5 7.7 153 42-245 38-200 (535)
174 2f9l_A RAB11B, member RAS onco 99.5 1.4E-13 4.7E-18 125.6 12.0 152 44-245 4-160 (199)
175 1pui_A ENGB, probable GTP-bind 99.5 2.5E-13 8.6E-18 124.7 12.3 155 41-243 22-189 (210)
176 2aka_B Dynamin-1; fusion prote 99.5 1.1E-13 3.8E-18 134.5 10.4 106 122-244 124-244 (299)
177 3r7w_B Gtpase2, GTP-binding pr 99.5 1.5E-13 5.1E-18 133.6 10.7 160 47-244 1-165 (331)
178 2ged_A SR-beta, signal recogni 99.5 1.2E-13 4.2E-18 124.9 9.3 116 43-199 46-172 (193)
179 1jwy_B Dynamin A GTPase domain 99.5 9.7E-14 3.3E-18 136.0 8.6 70 121-197 129-212 (315)
180 1wxq_A GTP-binding protein; st 99.4 2.9E-13 9.9E-18 136.5 12.0 37 123-159 71-114 (397)
181 2qag_A Septin-2, protein NEDD5 99.4 1.2E-13 4.3E-18 137.8 8.5 159 43-243 35-223 (361)
182 1oix_A RAS-related protein RAB 99.4 1E-12 3.4E-17 119.1 12.0 151 43-243 27-182 (191)
183 2j69_A Bacterial dynamin-like 99.4 8.7E-13 3E-17 142.4 12.2 113 123-244 174-316 (695)
184 3p32_A Probable GTPase RV1496/ 99.4 6.8E-13 2.3E-17 132.3 10.3 108 119-245 168-276 (355)
185 3c5h_A Glucocorticoid receptor 99.4 2.2E-13 7.5E-18 129.5 5.7 78 146-244 162-246 (255)
186 2p67_A LAO/AO transport system 99.4 9.6E-13 3.3E-17 130.4 9.4 107 120-245 146-253 (341)
187 1udx_A The GTP-binding protein 99.3 4.9E-12 1.7E-16 127.8 9.3 152 45-245 157-317 (416)
188 2www_A Methylmalonic aciduria 99.3 1.2E-11 4E-16 122.9 11.8 106 120-244 164-270 (349)
189 2qpt_A EH domain-containing pr 99.3 6.4E-12 2.2E-16 131.9 10.3 79 123-213 154-244 (550)
190 2wsm_A Hydrogenase expression/ 99.3 6.3E-13 2.1E-17 123.1 1.9 165 42-244 27-205 (221)
191 3t34_A Dynamin-related protein 99.3 8.1E-12 2.8E-16 124.8 9.2 104 122-243 135-251 (360)
192 2x2e_A Dynamin-1; nitration, h 99.2 1.3E-11 4.4E-16 122.9 9.5 106 122-244 129-249 (353)
193 3zvr_A Dynamin-1; hydrolase, D 99.2 3.5E-11 1.2E-15 129.2 10.7 107 122-245 149-270 (772)
194 1yrb_A ATP(GTP)binding protein 99.1 1.1E-10 3.9E-15 110.8 9.9 110 122-243 108-247 (262)
195 1xe1_A Hypothetical protein PF 99.1 4E-10 1.4E-14 90.7 10.9 80 271-355 31-113 (116)
196 4a9a_A Ribosome-interacting GT 99.1 9.9E-11 3.4E-15 116.5 8.4 116 41-196 68-195 (376)
197 1cip_A Protein (guanine nucleo 99.1 7.7E-10 2.6E-14 109.6 14.0 136 108-244 178-335 (353)
198 1jal_A YCHF protein; nucleotid 99.1 5E-10 1.7E-14 110.8 11.5 82 46-158 3-108 (363)
199 1zcb_A G alpha I/13; GTP-bindi 99.1 9.3E-10 3.2E-14 109.4 13.2 134 110-244 188-344 (362)
200 2qnr_A Septin-2, protein NEDD5 99.0 9.4E-10 3.2E-14 106.9 11.2 160 44-244 17-205 (301)
201 2dby_A GTP-binding protein; GD 99.0 9.4E-10 3.2E-14 109.4 11.0 37 122-158 68-111 (368)
202 3ohm_A Guanine nucleotide-bind 99.0 2.1E-09 7.2E-14 104.9 11.9 134 107-244 151-309 (327)
203 2qag_C Septin-7; cell cycle, c 99.0 1.2E-09 4E-14 110.5 9.8 159 43-243 29-217 (418)
204 2qm8_A GTPase/ATPase; G protei 99.0 4.4E-09 1.5E-13 103.7 13.5 107 120-244 145-252 (337)
205 2hf9_A Probable hydrogenase ni 99.0 6.5E-10 2.2E-14 103.0 6.6 98 122-244 118-215 (226)
206 4fid_A G protein alpha subunit 98.9 6.4E-09 2.2E-13 101.9 12.9 138 107-245 145-320 (340)
207 2j37_W Signal recognition part 98.9 8.3E-09 2.8E-13 106.5 11.8 66 121-196 182-253 (504)
208 2xtz_A Guanine nucleotide-bind 98.8 3.7E-08 1.3E-12 97.4 13.3 70 122-195 182-262 (354)
209 1azs_C GS-alpha; complex (lyas 98.8 5.5E-08 1.9E-12 97.5 13.8 85 110-195 204-296 (402)
210 2qag_B Septin-6, protein NEDD5 98.6 1E-07 3.5E-12 96.0 10.6 139 42-220 39-209 (427)
211 3ec1_A YQEH GTPase; atnos1, at 98.6 3.7E-09 1.3E-13 105.6 -2.0 149 45-242 162-320 (369)
212 3sop_A Neuronal-specific septi 98.6 4.1E-07 1.4E-11 86.7 11.8 63 146-221 111-174 (270)
213 3h2y_A GTPase family protein; 98.5 1.3E-08 4.5E-13 101.5 1.4 150 46-243 161-320 (368)
214 2ohf_A Protein OLA1, GTP-bindi 98.5 8.2E-08 2.8E-12 95.9 6.2 85 43-158 20-128 (396)
215 1tq4_A IIGP1, interferon-induc 98.5 1.2E-06 4E-11 88.3 13.6 159 44-243 68-243 (413)
216 3dm5_A SRP54, signal recogniti 98.5 1.6E-06 5.6E-11 87.7 13.9 95 121-243 181-281 (443)
217 2v3c_C SRP54, signal recogniti 98.4 1.1E-06 3.8E-11 89.2 12.6 65 121-195 179-250 (432)
218 1u0l_A Probable GTPase ENGC; p 98.4 5.1E-07 1.7E-11 87.5 7.4 101 124-244 64-164 (301)
219 3kl4_A SRP54, signal recogniti 98.4 1.6E-06 5.5E-11 87.7 11.1 94 121-243 178-280 (433)
220 1j8m_F SRP54, signal recogniti 98.3 2.7E-06 9.2E-11 82.1 9.9 95 121-243 179-281 (297)
221 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.1E-06 7E-11 85.9 8.8 85 44-158 19-127 (392)
222 1puj_A YLQF, conserved hypothe 98.2 3.6E-06 1.2E-10 80.6 8.6 93 127-244 3-97 (282)
223 2xxa_A Signal recognition part 98.1 5.7E-06 2E-10 84.0 7.6 64 121-195 182-252 (433)
224 3e70_C DPA, signal recognition 98.0 3.3E-05 1.1E-09 75.4 11.5 93 122-243 211-310 (328)
225 2yv5_A YJEQ protein; hydrolase 98.0 6.4E-06 2.2E-10 79.7 6.4 96 133-245 66-161 (302)
226 1f5n_A Interferon-induced guan 97.9 4.9E-06 1.7E-10 87.3 4.5 25 42-66 35-59 (592)
227 3l82_B F-box only protein 4; T 97.9 2.7E-05 9.2E-10 70.1 7.5 178 42-243 13-213 (227)
228 3cnl_A YLQF, putative uncharac 97.8 5.5E-05 1.9E-09 71.5 8.4 87 130-243 4-91 (262)
229 1puj_A YLQF, conserved hypothe 97.7 2.4E-05 8.3E-10 74.8 5.6 24 43-66 118-141 (282)
230 3ec1_A YQEH GTPase; atnos1, at 97.7 2.8E-05 9.5E-10 77.4 6.1 103 125-244 51-153 (369)
231 3h2y_A GTPase family protein; 97.7 2.8E-05 9.5E-10 77.4 6.0 97 132-244 55-151 (368)
232 1t9h_A YLOQ, probable GTPase E 97.7 6.7E-05 2.3E-09 72.4 7.3 86 143-244 83-168 (307)
233 2yhs_A FTSY, cell division pro 97.6 0.0001 3.5E-09 75.3 8.1 64 121-195 374-450 (503)
234 1d1n_A Initiation factor 2; be 97.6 5.5E-05 1.9E-09 59.1 4.2 77 277-355 9-90 (99)
235 2crv_A IF-2MT, translation ini 97.5 0.00024 8.3E-09 57.5 7.6 80 276-356 12-99 (120)
236 1rj9_A FTSY, signal recognitio 97.5 0.0002 6.8E-09 69.1 7.7 64 122-196 184-260 (304)
237 3l2o_B F-box only protein 4; s 97.4 0.00032 1.1E-08 66.3 7.3 184 40-243 96-298 (312)
238 3szr_A Interferon-induced GTP- 97.4 0.00046 1.6E-08 73.2 9.5 22 45-66 45-66 (608)
239 1zu4_A FTSY; GTPase, signal re 97.3 0.00022 7.7E-09 69.3 6.4 26 42-67 102-127 (320)
240 3cnl_A YLQF, putative uncharac 97.3 9.9E-05 3.4E-09 69.8 3.1 21 46-66 100-120 (262)
241 2px0_A Flagellar biosynthesis 97.3 0.0003 1E-08 67.6 6.2 66 121-196 181-252 (296)
242 2ffh_A Protein (FFH); SRP54, s 97.3 0.00066 2.3E-08 68.4 8.9 64 121-195 179-249 (425)
243 1vma_A Cell division protein F 97.3 0.00077 2.6E-08 65.0 8.9 25 43-67 102-126 (306)
244 4dzz_A Plasmid partitioning pr 97.2 0.0012 4.2E-08 59.2 9.1 63 122-195 75-142 (206)
245 1zo1_I IF2, translation initia 97.0 0.0016 5.3E-08 67.1 9.2 95 260-356 394-493 (501)
246 2rcn_A Probable GTPase ENGC; Y 97.0 0.0019 6.3E-08 63.6 8.5 84 143-244 127-210 (358)
247 3b9q_A Chloroplast SRP recepto 96.9 0.0033 1.1E-07 60.5 9.3 25 43-67 98-122 (302)
248 3q5d_A Atlastin-1; G protein, 96.8 0.0031 1.1E-07 63.8 8.9 28 41-68 63-90 (447)
249 2og2_A Putative signal recogni 96.7 0.0044 1.5E-07 61.0 9.2 25 43-67 155-179 (359)
250 1ls1_A Signal recognition part 96.6 0.0054 1.9E-07 58.8 8.6 64 121-195 179-249 (295)
251 1g7s_A Translation initiation 96.5 0.013 4.6E-07 61.6 11.4 83 273-356 462-549 (594)
252 3izy_P Translation initiation 96.5 0.0056 1.9E-07 63.5 8.2 95 258-354 431-534 (537)
253 3cwq_A Para family chromosome 96.4 0.016 5.5E-07 52.3 9.8 65 121-195 66-132 (209)
254 3k9g_A PF-32 protein; ssgcid, 96.1 0.075 2.6E-06 49.6 13.5 65 121-195 143-209 (267)
255 3end_A Light-independent proto 96.0 0.019 6.5E-07 55.0 8.8 67 121-195 155-225 (307)
256 1t9h_A YLOQ, probable GTPase E 95.5 0.0047 1.6E-07 59.4 2.2 21 46-66 174-194 (307)
257 2yv5_A YJEQ protein; hydrolase 95.2 0.018 6.1E-07 55.3 5.0 21 46-66 166-186 (302)
258 1ye8_A Protein THEP1, hypothet 95.1 0.011 3.8E-07 52.0 3.3 23 47-69 2-24 (178)
259 1kgd_A CASK, peripheral plasma 95.0 0.011 3.7E-07 52.0 2.8 23 46-68 6-28 (180)
260 1lvg_A Guanylate kinase, GMP k 95.0 0.0098 3.4E-07 53.3 2.4 23 46-68 5-27 (198)
261 1knq_A Gluconate kinase; ALFA/ 94.7 0.023 8E-07 49.3 4.3 27 45-71 8-34 (175)
262 4ido_A Atlastin-1; GTPase, GTP 94.6 0.073 2.5E-06 53.6 7.9 137 41-195 63-221 (457)
263 3a00_A Guanylate kinase, GMP k 94.6 0.016 5.5E-07 51.1 2.7 21 47-67 3-23 (186)
264 3c8u_A Fructokinase; YP_612366 94.6 0.019 6.6E-07 51.6 3.3 26 43-68 20-45 (208)
265 3asz_A Uridine kinase; cytidin 94.5 0.022 7.6E-07 51.1 3.7 27 44-70 5-31 (211)
266 3tr0_A Guanylate kinase, GMP k 94.5 0.018 6E-07 51.4 2.9 23 46-68 8-30 (205)
267 4eun_A Thermoresistant glucoki 94.5 0.024 8.1E-07 50.7 3.7 29 44-72 28-56 (200)
268 1zp6_A Hypothetical protein AT 94.4 0.022 7.4E-07 50.2 3.2 22 46-67 10-31 (191)
269 1znw_A Guanylate kinase, GMP k 94.4 0.019 6.6E-07 51.6 2.8 23 46-68 21-43 (207)
270 1kag_A SKI, shikimate kinase I 94.3 0.022 7.6E-07 49.3 3.0 26 46-71 5-30 (173)
271 3kjh_A CO dehydrogenase/acetyl 94.3 0.042 1.4E-06 50.5 5.1 66 121-195 130-195 (254)
272 4gp7_A Metallophosphoesterase; 94.3 0.02 6.9E-07 49.8 2.7 21 46-66 10-30 (171)
273 1z6g_A Guanylate kinase; struc 94.2 0.022 7.4E-07 51.8 2.8 25 44-68 22-46 (218)
274 3kb2_A SPBC2 prophage-derived 94.2 0.031 1E-06 48.1 3.6 24 47-70 3-26 (173)
275 1s96_A Guanylate kinase, GMP k 94.1 0.026 8.9E-07 51.4 3.2 23 46-68 17-39 (219)
276 2bbw_A Adenylate kinase 4, AK4 94.1 0.032 1.1E-06 51.6 3.9 28 45-72 27-54 (246)
277 3lw7_A Adenylate kinase relate 94.1 0.032 1.1E-06 48.0 3.5 25 46-71 2-26 (179)
278 3ney_A 55 kDa erythrocyte memb 94.0 0.029 9.9E-07 50.2 3.2 26 44-69 18-43 (197)
279 1g3q_A MIND ATPase, cell divis 94.0 0.064 2.2E-06 48.9 5.6 65 122-195 111-175 (237)
280 3t61_A Gluconokinase; PSI-biol 93.9 0.031 1E-06 49.9 3.3 27 45-71 18-44 (202)
281 3tau_A Guanylate kinase, GMP k 93.9 0.03 1E-06 50.4 3.2 25 45-69 8-32 (208)
282 2ph1_A Nucleotide-binding prot 93.8 0.096 3.3E-06 48.8 6.7 68 121-195 127-194 (262)
283 1htw_A HI0065; nucleotide-bind 93.8 0.035 1.2E-06 47.8 3.2 25 44-68 32-56 (158)
284 3tif_A Uncharacterized ABC tra 93.8 0.03 1E-06 51.5 2.9 21 46-66 32-52 (235)
285 2pcj_A ABC transporter, lipopr 93.7 0.034 1.2E-06 50.8 3.2 21 46-66 31-51 (224)
286 1cke_A CK, MSSA, protein (cyti 93.7 0.039 1.3E-06 50.0 3.6 32 46-77 6-39 (227)
287 2j41_A Guanylate kinase; GMP, 93.7 0.033 1.1E-06 49.6 3.0 22 46-67 7-28 (207)
288 3trf_A Shikimate kinase, SK; a 93.6 0.046 1.6E-06 47.8 3.7 27 45-71 5-31 (185)
289 2bdt_A BH3686; alpha-beta prot 93.6 0.035 1.2E-06 48.8 2.9 22 46-67 3-24 (189)
290 2jeo_A Uridine-cytidine kinase 93.6 0.044 1.5E-06 50.6 3.7 29 43-71 23-51 (245)
291 2rcn_A Probable GTPase ENGC; Y 93.5 0.035 1.2E-06 54.4 3.1 21 46-66 216-236 (358)
292 1hyq_A MIND, cell division inh 93.5 0.078 2.7E-06 49.3 5.4 65 122-195 110-174 (263)
293 3cm0_A Adenylate kinase; ATP-b 93.5 0.054 1.9E-06 47.3 4.1 27 45-71 4-30 (186)
294 2rhm_A Putative kinase; P-loop 93.5 0.055 1.9E-06 47.5 4.1 27 45-71 5-31 (193)
295 1ex7_A Guanylate kinase; subst 93.5 0.041 1.4E-06 48.7 3.2 22 48-69 4-25 (186)
296 3vaa_A Shikimate kinase, SK; s 93.4 0.05 1.7E-06 48.4 3.8 28 44-71 24-51 (199)
297 1np6_A Molybdopterin-guanine d 93.4 0.047 1.6E-06 47.8 3.4 23 45-67 6-28 (174)
298 1xjc_A MOBB protein homolog; s 93.4 0.047 1.6E-06 47.5 3.4 23 45-67 4-26 (169)
299 2jaq_A Deoxyguanosine kinase; 93.4 0.05 1.7E-06 48.2 3.7 25 47-71 2-26 (205)
300 2qor_A Guanylate kinase; phosp 93.4 0.044 1.5E-06 49.0 3.2 24 46-69 13-36 (204)
301 1tev_A UMP-CMP kinase; ploop, 93.4 0.054 1.9E-06 47.5 3.8 27 45-71 3-29 (196)
302 3fb4_A Adenylate kinase; psych 93.3 0.053 1.8E-06 48.8 3.8 25 47-71 2-26 (216)
303 1aky_A Adenylate kinase; ATP:A 93.3 0.053 1.8E-06 49.0 3.7 28 44-71 3-30 (220)
304 3lnc_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 51.0 2.2 23 44-66 26-48 (231)
305 1jjv_A Dephospho-COA kinase; P 93.3 0.046 1.6E-06 48.9 3.2 25 46-71 3-27 (206)
306 2v9p_A Replication protein E1; 93.3 0.042 1.4E-06 52.7 3.1 26 43-68 124-149 (305)
307 3b85_A Phosphate starvation-in 93.3 0.04 1.4E-06 49.7 2.8 22 46-67 23-44 (208)
308 2cbz_A Multidrug resistance-as 93.2 0.042 1.4E-06 50.7 2.9 20 46-65 32-51 (237)
309 3tqc_A Pantothenate kinase; bi 93.2 0.061 2.1E-06 52.0 4.2 28 42-69 89-116 (321)
310 2onk_A Molybdate/tungstate ABC 93.2 0.042 1.4E-06 50.8 2.9 21 46-66 25-45 (240)
311 2pze_A Cystic fibrosis transme 93.2 0.043 1.5E-06 50.3 2.9 21 46-66 35-55 (229)
312 4g1u_C Hemin import ATP-bindin 93.1 0.044 1.5E-06 51.5 3.0 22 45-66 37-58 (266)
313 1mv5_A LMRA, multidrug resista 93.1 0.044 1.5E-06 50.7 2.9 21 46-66 29-49 (243)
314 2if2_A Dephospho-COA kinase; a 93.1 0.057 2E-06 48.1 3.6 24 46-70 2-25 (204)
315 2eyu_A Twitching motility prot 93.1 0.048 1.6E-06 51.1 3.1 24 44-67 24-47 (261)
316 2f1r_A Molybdopterin-guanine d 93.1 0.026 8.9E-07 49.3 1.2 22 46-67 3-24 (171)
317 3aez_A Pantothenate kinase; tr 93.1 0.053 1.8E-06 52.2 3.5 27 42-68 87-113 (312)
318 1ly1_A Polynucleotide kinase; 93.1 0.051 1.8E-06 47.1 3.1 22 46-67 3-24 (181)
319 3tlx_A Adenylate kinase 2; str 93.0 0.068 2.3E-06 49.4 4.1 29 43-71 27-55 (243)
320 3gfo_A Cobalt import ATP-bindi 93.0 0.046 1.6E-06 51.7 2.9 21 46-66 35-55 (275)
321 3dl0_A Adenylate kinase; phosp 93.0 0.058 2E-06 48.5 3.6 25 47-71 2-26 (216)
322 1g6h_A High-affinity branched- 93.0 0.046 1.6E-06 51.1 2.9 21 46-66 34-54 (257)
323 1ukz_A Uridylate kinase; trans 93.0 0.072 2.5E-06 47.3 4.2 29 43-71 13-41 (203)
324 2ff7_A Alpha-hemolysin translo 93.0 0.047 1.6E-06 50.7 2.9 21 46-66 36-56 (247)
325 1b0u_A Histidine permease; ABC 93.0 0.047 1.6E-06 51.2 2.9 21 46-66 33-53 (262)
326 2c95_A Adenylate kinase 1; tra 93.0 0.065 2.2E-06 47.2 3.8 27 45-71 9-35 (196)
327 1sgw_A Putative ABC transporte 93.0 0.045 1.5E-06 49.6 2.7 20 47-66 37-56 (214)
328 1ji0_A ABC transporter; ATP bi 92.9 0.049 1.7E-06 50.3 2.9 21 46-66 33-53 (240)
329 1bif_A 6-phosphofructo-2-kinas 92.9 0.034 1.2E-06 56.8 2.0 25 43-67 37-61 (469)
330 2i3b_A HCR-ntpase, human cance 92.9 0.055 1.9E-06 48.0 3.2 21 47-67 3-23 (189)
331 1qhx_A CPT, protein (chloramph 92.9 0.062 2.1E-06 46.6 3.5 25 46-70 4-28 (178)
332 2ghi_A Transport protein; mult 92.9 0.05 1.7E-06 50.9 2.9 21 46-66 47-67 (260)
333 4e22_A Cytidylate kinase; P-lo 92.9 0.065 2.2E-06 49.8 3.7 29 44-72 26-54 (252)
334 1nks_A Adenylate kinase; therm 92.9 0.06 2.1E-06 47.1 3.3 25 46-70 2-26 (194)
335 3uie_A Adenylyl-sulfate kinase 92.9 0.058 2E-06 48.0 3.2 26 43-68 23-48 (200)
336 2d2e_A SUFC protein; ABC-ATPas 92.8 0.054 1.8E-06 50.4 3.1 21 46-66 30-50 (250)
337 2olj_A Amino acid ABC transpor 92.8 0.051 1.8E-06 50.9 2.9 21 46-66 51-71 (263)
338 2qt1_A Nicotinamide riboside k 92.8 0.064 2.2E-06 47.9 3.4 25 44-68 20-44 (207)
339 1uf9_A TT1252 protein; P-loop, 92.8 0.066 2.3E-06 47.4 3.5 27 44-71 7-33 (203)
340 2plr_A DTMP kinase, probable t 92.8 0.076 2.6E-06 47.3 3.9 27 45-71 4-30 (213)
341 2yvu_A Probable adenylyl-sulfa 92.7 0.07 2.4E-06 46.8 3.6 25 43-67 11-35 (186)
342 2qi9_C Vitamin B12 import ATP- 92.7 0.055 1.9E-06 50.3 2.9 21 46-66 27-47 (249)
343 2cdn_A Adenylate kinase; phosp 92.7 0.078 2.7E-06 47.1 3.9 30 42-71 17-46 (201)
344 1qf9_A UMP/CMP kinase, protein 92.7 0.093 3.2E-06 45.9 4.4 27 45-71 6-32 (194)
345 1uj2_A Uridine-cytidine kinase 92.7 0.074 2.5E-06 49.3 3.8 28 43-70 20-47 (252)
346 1vpl_A ABC transporter, ATP-bi 92.7 0.055 1.9E-06 50.5 2.9 21 46-66 42-62 (256)
347 1odf_A YGR205W, hypothetical 3 92.7 0.065 2.2E-06 51.0 3.5 26 42-67 28-53 (290)
348 1kht_A Adenylate kinase; phosp 92.6 0.059 2E-06 47.2 2.9 25 46-70 4-28 (192)
349 3kta_A Chromosome segregation 92.6 0.074 2.5E-06 46.3 3.5 24 47-70 28-51 (182)
350 2ixe_A Antigen peptide transpo 92.6 0.058 2E-06 50.8 2.9 21 46-66 46-66 (271)
351 1y63_A LMAJ004144AAA protein; 92.6 0.082 2.8E-06 46.4 3.8 26 45-70 10-36 (184)
352 2bwj_A Adenylate kinase 5; pho 92.6 0.07 2.4E-06 47.1 3.4 27 45-71 12-38 (199)
353 2yz2_A Putative ABC transporte 92.5 0.059 2E-06 50.6 2.9 21 46-66 34-54 (266)
354 2ehv_A Hypothetical protein PH 92.5 0.058 2E-06 49.5 2.8 21 46-66 31-51 (251)
355 2zu0_C Probable ATP-dependent 92.5 0.063 2.1E-06 50.5 3.1 21 46-66 47-67 (267)
356 1nij_A Hypothetical protein YJ 92.5 0.071 2.4E-06 51.4 3.5 24 44-67 3-26 (318)
357 2ihy_A ABC transporter, ATP-bi 92.5 0.06 2.1E-06 50.9 2.9 21 46-66 48-68 (279)
358 2nq2_C Hypothetical ABC transp 92.4 0.062 2.1E-06 50.0 2.9 21 46-66 32-52 (253)
359 1via_A Shikimate kinase; struc 92.4 0.071 2.4E-06 46.2 3.1 25 47-71 6-30 (175)
360 2wwf_A Thymidilate kinase, put 92.3 0.082 2.8E-06 47.2 3.5 25 44-68 9-33 (212)
361 3iij_A Coilin-interacting nucl 92.3 0.075 2.6E-06 46.3 3.2 27 45-71 11-37 (180)
362 1u0l_A Probable GTPase ENGC; p 92.3 0.064 2.2E-06 51.3 2.9 21 46-66 170-190 (301)
363 4a74_A DNA repair and recombin 92.3 0.073 2.5E-06 48.1 3.2 22 46-67 26-47 (231)
364 1sq5_A Pantothenate kinase; P- 92.3 0.097 3.3E-06 50.2 4.2 27 43-69 78-104 (308)
365 1rz3_A Hypothetical protein rb 92.2 0.082 2.8E-06 47.1 3.4 24 44-67 21-44 (201)
366 1e4v_A Adenylate kinase; trans 92.2 0.095 3.2E-06 47.1 3.8 25 47-71 2-26 (214)
367 1zd8_A GTP:AMP phosphotransfer 92.1 0.089 3E-06 47.8 3.5 26 46-71 8-33 (227)
368 2pt5_A Shikimate kinase, SK; a 92.1 0.097 3.3E-06 44.8 3.6 25 47-71 2-26 (168)
369 1nn5_A Similar to deoxythymidy 92.0 0.083 2.8E-06 47.2 3.1 24 45-68 9-32 (215)
370 2grj_A Dephospho-COA kinase; T 92.0 0.12 4.1E-06 45.9 4.1 29 43-71 10-38 (192)
371 3la6_A Tyrosine-protein kinase 92.0 0.28 9.6E-06 46.4 6.9 66 122-195 201-266 (286)
372 2v54_A DTMP kinase, thymidylat 91.9 0.08 2.7E-06 46.9 3.0 25 45-69 4-28 (204)
373 2pjz_A Hypothetical protein ST 91.9 0.077 2.6E-06 49.7 2.9 20 47-66 32-51 (263)
374 2bbs_A Cystic fibrosis transme 91.9 0.082 2.8E-06 50.3 3.1 21 46-66 65-85 (290)
375 1zuh_A Shikimate kinase; alpha 91.9 0.11 3.7E-06 44.7 3.7 26 46-71 8-33 (168)
376 3ec2_A DNA replication protein 91.8 0.084 2.9E-06 46.0 2.9 23 45-67 38-60 (180)
377 2gza_A Type IV secretion syste 91.8 0.073 2.5E-06 52.3 2.7 23 44-66 174-196 (361)
378 2vli_A Antibiotic resistance p 91.7 0.078 2.7E-06 46.1 2.6 25 46-70 6-30 (183)
379 3nh6_A ATP-binding cassette SU 91.7 0.053 1.8E-06 52.0 1.5 23 44-66 79-101 (306)
380 3umf_A Adenylate kinase; rossm 91.7 0.15 5.2E-06 46.2 4.5 28 44-71 28-55 (217)
381 3jvv_A Twitching mobility prot 91.7 0.098 3.4E-06 51.3 3.4 22 46-67 124-145 (356)
382 3tui_C Methionine import ATP-b 91.7 0.078 2.7E-06 52.1 2.7 21 46-66 55-75 (366)
383 1gvn_B Zeta; postsegregational 91.7 0.13 4.4E-06 48.8 4.2 26 44-69 32-57 (287)
384 2p5t_B PEZT; postsegregational 91.6 0.095 3.3E-06 48.6 3.2 29 42-70 29-57 (253)
385 2kjq_A DNAA-related protein; s 91.6 0.1 3.4E-06 44.3 3.0 23 44-66 35-57 (149)
386 3sr0_A Adenylate kinase; phosp 91.5 0.13 4.3E-06 46.3 3.8 25 47-71 2-26 (206)
387 1vht_A Dephospho-COA kinase; s 91.5 0.11 3.6E-06 46.9 3.3 26 45-71 4-29 (218)
388 1zak_A Adenylate kinase; ATP:A 91.5 0.1 3.5E-06 47.2 3.2 26 46-71 6-31 (222)
389 2pt7_A CAG-ALFA; ATPase, prote 91.4 0.072 2.5E-06 51.7 2.2 22 45-66 171-192 (330)
390 3fvq_A Fe(3+) IONS import ATP- 91.4 0.092 3.1E-06 51.5 2.9 47 169-220 142-189 (359)
391 2z0h_A DTMP kinase, thymidylat 91.4 0.12 4.2E-06 45.4 3.5 23 47-69 2-24 (197)
392 2vp4_A Deoxynucleoside kinase; 91.4 0.093 3.2E-06 47.9 2.8 28 41-68 16-43 (230)
393 3be4_A Adenylate kinase; malar 91.3 0.14 4.8E-06 46.1 3.9 26 46-71 6-31 (217)
394 1lw7_A Transcriptional regulat 91.3 0.093 3.2E-06 51.6 2.9 25 45-69 170-194 (365)
395 2ewv_A Twitching motility prot 91.3 0.1 3.6E-06 51.5 3.2 24 44-67 135-158 (372)
396 1gtv_A TMK, thymidylate kinase 91.3 0.052 1.8E-06 48.6 0.9 21 47-67 2-22 (214)
397 2pbr_A DTMP kinase, thymidylat 91.2 0.14 4.8E-06 44.8 3.8 23 47-69 2-24 (195)
398 3r20_A Cytidylate kinase; stru 91.2 0.13 4.3E-06 47.3 3.5 28 44-71 8-35 (233)
399 2ze6_A Isopentenyl transferase 91.2 0.15 5E-06 47.4 4.0 24 47-70 3-26 (253)
400 1wcv_1 SOJ, segregation protei 91.1 0.6 2E-05 43.1 8.2 66 121-195 110-181 (257)
401 2pez_A Bifunctional 3'-phospho 91.1 0.12 4.2E-06 44.9 3.2 23 45-67 5-27 (179)
402 1e6c_A Shikimate kinase; phosp 91.1 0.13 4.4E-06 44.2 3.3 25 47-71 4-28 (173)
403 3nwj_A ATSK2; P loop, shikimat 91.1 0.11 3.9E-06 48.1 3.1 27 45-71 48-74 (250)
404 2iyv_A Shikimate kinase, SK; t 91.0 0.14 4.8E-06 44.6 3.5 26 46-71 3-28 (184)
405 3ea0_A ATPase, para family; al 91.0 0.18 6.1E-06 46.1 4.4 65 122-195 118-184 (245)
406 2xb4_A Adenylate kinase; ATP-b 91.0 0.14 4.9E-06 46.3 3.6 25 47-71 2-26 (223)
407 1z47_A CYSA, putative ABC-tran 90.8 0.1 3.6E-06 51.0 2.7 47 169-220 149-196 (355)
408 2yyz_A Sugar ABC transporter, 90.8 0.11 3.6E-06 51.1 2.7 47 169-220 137-184 (359)
409 3cio_A ETK, tyrosine-protein k 90.8 0.49 1.7E-05 45.0 7.3 66 122-195 213-278 (299)
410 3rlf_A Maltose/maltodextrin im 90.7 0.11 3.8E-06 51.3 2.7 34 183-220 151-184 (381)
411 2oap_1 GSPE-2, type II secreti 90.6 0.1 3.5E-06 53.8 2.5 22 45-66 260-281 (511)
412 3bfv_A CAPA1, CAPB2, membrane 90.6 0.33 1.1E-05 45.5 5.8 66 122-195 191-256 (271)
413 2it1_A 362AA long hypothetical 90.5 0.13 4.3E-06 50.6 2.9 21 46-66 30-50 (362)
414 1f2t_A RAD50 ABC-ATPase; DNA d 90.5 0.13 4.6E-06 43.5 2.8 23 47-69 25-47 (149)
415 1g29_1 MALK, maltose transport 90.5 0.12 4E-06 51.1 2.7 48 169-220 143-190 (372)
416 1v43_A Sugar-binding transport 90.5 0.12 4E-06 51.0 2.7 49 168-220 144-192 (372)
417 1ak2_A Adenylate kinase isoenz 90.4 0.17 5.9E-06 46.1 3.6 27 45-71 16-42 (233)
418 1p9r_A General secretion pathw 90.4 0.15 5.2E-06 51.1 3.4 25 44-68 166-190 (418)
419 2f6r_A COA synthase, bifunctio 90.4 0.17 5.6E-06 47.9 3.6 28 43-71 73-100 (281)
420 1q3t_A Cytidylate kinase; nucl 90.3 0.18 6.2E-06 46.0 3.7 35 43-77 14-50 (236)
421 3a4m_A L-seryl-tRNA(SEC) kinas 90.0 0.17 5.7E-06 47.2 3.2 22 46-67 5-26 (260)
422 3gd7_A Fusion complex of cysti 89.8 0.17 5.9E-06 50.1 3.3 21 46-66 48-68 (390)
423 2x8a_A Nuclear valosin-contain 89.7 0.19 6.3E-06 47.3 3.3 24 47-70 46-69 (274)
424 3ake_A Cytidylate kinase; CMP 89.6 0.22 7.6E-06 44.1 3.6 25 47-71 4-28 (208)
425 3d31_A Sulfate/molybdate ABC t 89.5 0.1 3.5E-06 51.0 1.3 47 169-220 131-178 (348)
426 2w0m_A SSO2452; RECA, SSPF, un 89.5 0.21 7.1E-06 45.0 3.4 22 46-67 24-45 (235)
427 1m7g_A Adenylylsulfate kinase; 89.4 0.2 7E-06 44.8 3.2 23 45-67 25-47 (211)
428 1a7j_A Phosphoribulokinase; tr 89.4 0.11 3.9E-06 49.3 1.6 27 44-70 4-30 (290)
429 2oze_A ORF delta'; para, walke 89.4 0.77 2.6E-05 43.3 7.4 65 122-195 154-224 (298)
430 3gmt_A Adenylate kinase; ssgci 89.3 0.25 8.6E-06 45.1 3.7 28 44-71 7-34 (230)
431 4eaq_A DTMP kinase, thymidylat 89.1 0.28 9.5E-06 44.8 4.0 27 44-70 25-51 (229)
432 3q9l_A Septum site-determining 89.1 0.27 9.3E-06 45.3 3.9 65 122-195 113-185 (260)
433 2npi_A Protein CLP1; CLP1-PCF1 89.0 0.2 6.9E-06 50.8 3.2 24 44-67 137-160 (460)
434 2xj4_A MIPZ; replication, cell 88.9 1.1 3.7E-05 42.2 8.1 35 122-158 103-137 (286)
435 1ixz_A ATP-dependent metallopr 88.7 0.25 8.5E-06 45.6 3.3 24 46-69 50-73 (254)
436 2obl_A ESCN; ATPase, hydrolase 88.6 0.26 9E-06 48.0 3.6 23 46-68 72-94 (347)
437 1oxx_K GLCV, glucose, ABC tran 88.5 0.11 3.8E-06 50.8 0.9 21 46-66 32-52 (353)
438 1cr0_A DNA primase/helicase; R 88.5 0.25 8.7E-06 46.7 3.3 22 46-67 36-57 (296)
439 3qf7_A RAD50; ABC-ATPase, ATPa 88.5 0.24 8.2E-06 48.7 3.2 21 48-68 26-46 (365)
440 2b8t_A Thymidine kinase; deoxy 88.3 0.83 2.8E-05 41.4 6.5 21 46-66 13-33 (223)
441 3zvl_A Bifunctional polynucleo 88.2 0.34 1.2E-05 48.5 4.2 28 43-70 256-283 (416)
442 3euj_A Chromosome partition pr 88.0 0.24 8.3E-06 50.4 2.9 22 46-67 30-51 (483)
443 2cvh_A DNA repair and recombin 88.0 0.27 9.2E-06 43.9 3.0 22 46-67 21-42 (220)
444 3b60_A Lipid A export ATP-bind 87.8 0.26 8.8E-06 51.7 3.1 21 46-66 370-390 (582)
445 1yqt_A RNAse L inhibitor; ATP- 87.6 0.26 8.8E-06 51.2 2.9 21 46-66 48-68 (538)
446 1svm_A Large T antigen; AAA+ f 87.6 0.35 1.2E-05 47.7 3.8 26 43-68 167-192 (377)
447 1iy2_A ATP-dependent metallopr 87.6 0.32 1.1E-05 45.6 3.3 23 47-69 75-97 (278)
448 1in4_A RUVB, holliday junction 87.5 0.29 9.8E-06 47.4 3.0 26 45-70 51-76 (334)
449 1jbk_A CLPB protein; beta barr 87.4 0.36 1.2E-05 41.5 3.4 24 44-67 42-65 (195)
450 3b5x_A Lipid A export ATP-bind 87.4 0.27 9.1E-06 51.6 3.0 22 45-66 369-390 (582)
451 1n0w_A DNA repair protein RAD5 87.3 0.33 1.1E-05 44.1 3.2 22 46-67 25-46 (243)
452 1lv7_A FTSH; alpha/beta domain 87.3 0.38 1.3E-05 44.3 3.7 24 45-68 45-68 (257)
453 1ltq_A Polynucleotide kinase; 87.2 0.32 1.1E-05 46.1 3.1 22 46-67 3-24 (301)
454 3qks_A DNA double-strand break 87.1 0.29 1E-05 43.7 2.6 24 47-70 25-48 (203)
455 3ozx_A RNAse L inhibitor; ATP 87.0 0.29 1E-05 50.7 2.9 21 46-66 26-46 (538)
456 2dpy_A FLII, flagellum-specifi 86.9 0.37 1.3E-05 48.6 3.6 22 46-67 158-179 (438)
457 2yl4_A ATP-binding cassette SU 86.8 0.26 9E-06 51.8 2.5 21 46-66 371-391 (595)
458 1p5z_B DCK, deoxycytidine kina 86.8 0.23 8E-06 46.1 1.9 27 43-69 22-48 (263)
459 3qf4_B Uncharacterized ABC tra 86.7 0.28 9.6E-06 51.6 2.6 23 44-66 380-402 (598)
460 2h92_A Cytidylate kinase; ross 86.6 0.35 1.2E-05 43.3 2.9 25 46-70 4-28 (219)
461 3hr8_A Protein RECA; alpha and 86.5 1.7 5.8E-05 42.4 8.0 21 46-66 62-82 (356)
462 3crm_A TRNA delta(2)-isopenten 86.5 0.47 1.6E-05 45.6 3.9 25 46-70 6-30 (323)
463 3tqf_A HPR(Ser) kinase; transf 86.5 0.4 1.4E-05 41.6 3.0 22 46-67 17-38 (181)
464 3d3q_A TRNA delta(2)-isopenten 86.4 0.46 1.6E-05 46.0 3.8 25 46-70 8-32 (340)
465 3j16_B RLI1P; ribosome recycli 86.3 0.33 1.1E-05 51.0 2.9 21 46-66 104-124 (608)
466 1nlf_A Regulatory protein REPA 86.2 0.39 1.3E-05 45.0 3.2 22 46-67 31-52 (279)
467 3bk7_A ABC transporter ATP-bin 86.1 0.35 1.2E-05 50.9 2.9 21 46-66 118-138 (607)
468 4a82_A Cystic fibrosis transme 86.1 0.24 8.1E-06 51.9 1.7 23 44-66 366-388 (578)
469 3ozx_A RNAse L inhibitor; ATP 85.9 0.36 1.2E-05 50.1 2.9 20 47-66 296-315 (538)
470 1ihu_A Arsenical pump-driving 85.8 1.1 3.9E-05 46.8 6.8 176 42-243 5-288 (589)
471 1yqt_A RNAse L inhibitor; ATP- 85.8 0.37 1.3E-05 50.0 2.9 20 47-66 314-333 (538)
472 2w58_A DNAI, primosome compone 85.6 0.52 1.8E-05 41.6 3.5 22 46-67 55-76 (202)
473 2ocp_A DGK, deoxyguanosine kin 85.5 0.49 1.7E-05 43.2 3.4 24 46-69 3-26 (241)
474 1e69_A Chromosome segregation 85.4 0.37 1.3E-05 46.3 2.6 24 47-70 26-49 (322)
475 2ga8_A Hypothetical 39.9 kDa p 85.2 0.51 1.7E-05 46.0 3.4 25 44-68 23-47 (359)
476 3qf4_A ABC transporter, ATP-bi 85.2 0.29 1E-05 51.3 1.9 22 45-66 369-390 (587)
477 3bk7_A ABC transporter ATP-bin 85.1 0.44 1.5E-05 50.2 3.1 20 47-66 384-403 (607)
478 2p65_A Hypothetical protein PF 85.0 0.47 1.6E-05 40.7 2.9 24 44-67 42-65 (187)
479 3bos_A Putative DNA replicatio 85.0 0.55 1.9E-05 42.2 3.5 24 44-67 51-74 (242)
480 2qmh_A HPR kinase/phosphorylas 85.0 0.56 1.9E-05 41.7 3.3 21 46-66 35-55 (205)
481 3foz_A TRNA delta(2)-isopenten 84.6 0.69 2.4E-05 44.2 4.0 26 45-70 10-35 (316)
482 4aby_A DNA repair protein RECN 84.4 0.23 7.8E-06 49.5 0.6 24 47-70 62-85 (415)
483 2dr3_A UPF0273 protein PH0284; 84.2 0.65 2.2E-05 42.1 3.6 22 46-67 24-45 (247)
484 3exa_A TRNA delta(2)-isopenten 84.2 0.64 2.2E-05 44.5 3.5 25 46-70 4-28 (322)
485 3j16_B RLI1P; ribosome recycli 84.0 0.48 1.6E-05 49.8 2.8 20 47-66 380-399 (608)
486 1byi_A Dethiobiotin synthase; 84.0 2.4 8.2E-05 37.7 7.3 68 121-195 107-179 (224)
487 1qhl_A Protein (cell division 83.9 0.093 3.2E-06 48.0 -2.4 23 47-69 29-51 (227)
488 3qkt_A DNA double-strand break 83.9 0.54 1.9E-05 45.5 3.0 21 48-68 26-46 (339)
489 3ux8_A Excinuclease ABC, A sub 83.8 0.39 1.3E-05 51.2 2.1 21 46-66 349-369 (670)
490 4f4c_A Multidrug resistance pr 83.5 0.38 1.3E-05 55.5 2.0 24 43-66 1103-1126(1321)
491 4he6_A Peptidase family U32; u 83.4 0.95 3.2E-05 34.5 3.6 55 295-353 26-85 (89)
492 3ez9_A Para; DNA binding, wing 83.3 0.76 2.6E-05 45.6 3.9 73 121-195 246-322 (403)
493 3eph_A TRNA isopentenyltransfe 83.3 0.83 2.8E-05 45.3 4.0 25 46-70 3-27 (409)
494 1tf7_A KAIC; homohexamer, hexa 83.1 0.63 2.1E-05 48.1 3.3 21 45-65 39-59 (525)
495 3a8t_A Adenylate isopentenyltr 83.1 0.66 2.2E-05 44.9 3.2 25 46-70 41-65 (339)
496 4f4c_A Multidrug resistance pr 83.1 0.54 1.8E-05 54.2 3.0 25 43-67 442-466 (1321)
497 1pzn_A RAD51, DNA repair and r 83.0 0.69 2.4E-05 45.1 3.3 23 45-67 131-153 (349)
498 3t15_A Ribulose bisphosphate c 83.0 0.84 2.9E-05 43.2 3.9 28 43-70 34-61 (293)
499 3cr8_A Sulfate adenylyltranfer 83.0 0.46 1.6E-05 49.4 2.1 25 44-68 368-392 (552)
500 2qz4_A Paraplegin; AAA+, SPG7, 82.8 0.78 2.7E-05 42.1 3.5 27 43-69 37-63 (262)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=3e-85 Score=674.28 Aligned_cols=426 Identities=58% Similarity=0.973 Sum_probs=408.3
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...++.+||+++||+|+|||||+++|++.+|.++++.+.++++++.+.|++++.++|++|..++|+++|+|++.....++
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
++++.++|||||||++|.++|+.+++.+|++||||||++|.+|++|+..+|+++|+.++..+++|++|+|+||||++.++
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 99999999999999999999999999999999999999999999999889999999999999999899999999998888
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
|++++++++.+++..+++.+|+.+..+++++|+||++|+|+.++.+. ++||+|++|++.|+.+++|.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~--~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v 249 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF--CPWYIGLPFIPYLDNLPNFNRSVDGPIRLPI 249 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc--ccccCchHHHHHHHhCCCCccCCCCCeEEEE
Confidence 99999999999999999999987544689999999999999998764 8999999999999999998888899999999
Q ss_pred EEEEccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 280 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 280 ~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
+++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++++++++|.|||+|+|+|+|++..+++|||+|++++++
T Consensus 250 ~~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 250 VDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNL 329 (439)
T ss_pred EEEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceE
Q 011837 360 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 438 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi 438 (476)
++.++.|+|++.| +++ +++.+||++++|||+.+++|+|.+|.+++|.+||+..+.+|++|+.||.+.|+|++.+|+
T Consensus 330 ~~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~ 406 (439)
T 3j2k_7 330 CHSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTI 406 (439)
T ss_pred CceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeE
Confidence 8899999999999 555 569999999999999999999999999999999998888999999999999999999999
Q ss_pred EeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 439 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 439 ~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
|+|+|++|+.+|||+|||+|+|+|+|+|+++.
T Consensus 407 ~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 407 CLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EEeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 99999999999999999999999999999985
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=8.8e-81 Score=645.90 Aligned_cols=425 Identities=53% Similarity=0.947 Sum_probs=362.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++||+|+|||||+++|++.+|.++++.+.++.+++.+.|++++.+++++|..++|+++|+|++.....|+++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||++|.++|+++++.+|++|||||+++|.++++|+..+||++|+.++..+++|++|||+||||+..++|+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999999999999999999999999999999999888999999999999999889999999999877888
Q ss_pred HHHHHHHHHHHHHHHHhc-cCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEE
Q 011837 202 KERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 280 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~-~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~ 280 (476)
+++++++.+++..+++.+ |+.+..+++++|+||++|.|+.++++...+|||.|++|++.|+.++.|.+..+.|++++|+
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~ 279 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIA 279 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEE
Confidence 999999999999999888 7742125799999999999999988766799999999999999999887777899999999
Q ss_pred EEEccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 281 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 281 ~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+++|+| +..++++|++|++++.+
T Consensus 280 ~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 280 SKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSC
T ss_pred EEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 9999999999999999999 88899999999999989
Q ss_pred cccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 360 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
++.++.|+|++.||+. ++++..||++.+|+|+.+++|++..|.+++|. +++..+++|++|++||.+.|+|++.+|+|
T Consensus 359 ~~~~~~f~a~v~~l~~--~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~ 435 (467)
T 1r5b_A 359 VHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVC 435 (467)
T ss_dssp CCEEEEEEEEEEECSS--CCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEE
T ss_pred CccceEEEEEEEEeCC--CCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEE
Confidence 9999999999999532 36799999999999999999999999889998 88877788999999999999999999999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
+++|.+|+.+|||+|||+|+|+|+|+|+++.
T Consensus 436 ~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 436 MERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp CCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 9999999999999999999999999999875
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=9.6e-77 Score=614.19 Aligned_cols=424 Identities=38% Similarity=0.687 Sum_probs=397.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
+++.++|+++||+|+|||||+++|++.+|.++.+.+.++.+++.+.|+.++.+++++|..++|+++|+|++.....|++.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||++|.++|.++++.+|++|||||+++|.++++|+..+|+++|+.++..+++|++|||+||||+ .+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCC
Confidence 99999999999999999999999999999999999999888888877899999999999999889999999999 6678
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCC------------cchHHHHhhccCCCCC
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPR 269 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~------------g~~l~~~l~~i~~~~~ 269 (476)
+++++++.+++..+++.+++.. .+++++|+||++|.|+.++... ++||. |++|++.|+.+++|.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 8899999999999999988752 2478999999999999987654 89997 6789999999988888
Q ss_pred CCCCCeEEEEEEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCc
Q 011837 270 DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 347 (476)
Q Consensus 270 ~~~~p~~~~v~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i 347 (476)
..+.|++++|+++|+ +.|++++|+|++|.+++||.|.++|.+..++|++|++++.++++|.|||+|+|+|+|++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 889999999999994 889999999999999999999999999999999999999999999999999999999998999
Q ss_pred eeeeEEecCCC-CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCC
Q 011837 348 LSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 426 (476)
Q Consensus 348 ~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~ 426 (476)
++|++|+++++ ++..+++|+|++.||+ +..+|..||++++|+|+.+++|+|..|.+++|.++++..+++|++|++||
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l~--~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~ 396 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVLN--HPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 396 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEECS--CSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTC
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEeC--CCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCC
Confidence 99999999985 8889999999999953 13789999999999999999999999999999999998888899999999
Q ss_pred EEEEEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 427 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 427 ~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
.+.|+|++.+|+|+|+|.+|+.+|||+|||+|+|+|+|+|+++.+.
T Consensus 397 ~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 397 AALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 9999999999999999999999999999999999999999998765
No 4
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4.4e-76 Score=606.44 Aligned_cols=426 Identities=38% Similarity=0.705 Sum_probs=386.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++||+|+|||||+++|++.+|.++.+.+.+++.++.+.|+.++.+++++|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||++|.++|.++++.+|++|||+|+++|.|++.+++..|+++|+.++..++++++|+++||||+...+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999999887777677899999999999999879999999999666688
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEE
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 281 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~ 281 (476)
+++++.+.+++..+++.+++.. .+++++|+||++|.|+.++.+. ++||+|++|++.|+.+++|.+..+.|++++|++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 8899999999999999988752 2579999999999999998764 799999999999999888877778999999999
Q ss_pred EEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 282 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 282 ~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
+|+ +.|++++|+|.+|+|++||.|.++|++...+|++|++++.++++|.|||+|+++|+|++..++++||+|++++.+
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 994 789999999999999999999999999999999999999999999999999999999998999999999999888
Q ss_pred cccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEE
Q 011837 360 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 439 (476)
Q Consensus 360 ~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~ 439 (476)
+..+..|.|++.|++. +.+|.+||++.+|+|+.+++|+|..|.+++|.++++..+++|++|++||.+.|+|++.+|+|
T Consensus 320 ~~~~~~f~a~v~~l~~--~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 320 PTVADEFTARIIVVWH--PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp CCEESEEEEEEEECCC--SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred ceEeEEEEEEEEEECC--CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 8899999999999432 37899999999999999999999999999999999888888999999999999999999999
Q ss_pred eecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 440 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 440 ~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
+++|.+++.+|||+|||.|+|+|+|+|+++.+.
T Consensus 398 ~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 999999999999999999999999999998754
No 5
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=5e-76 Score=613.82 Aligned_cols=424 Identities=33% Similarity=0.572 Sum_probs=365.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++||+|+|||||+++|++.++.++.+.+.++.+.+.+.|++++.++|++|....|+++|+|++.....+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||++|.++|..+++.+|++|||||+++|.++++++...|+++|+.++..++++++|||+||||+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999988888777899999999999998889999999999 6788
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccC-CCCCCCcchHHHHhhcc----CC--CCCCCCCC
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI----EI--TPRDPNGP 274 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~-~~~w~~g~~l~~~l~~i----~~--~~~~~~~p 274 (476)
+.+++++.+++..+++.+++.. ..++++|+||++|.|+.++.... .++||+|++|+++|+.+ +. |....+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8999999999999999988862 36899999999999999875432 27899999999988876 22 55677899
Q ss_pred eEEEEEEEEc-----cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECC--------eeeeecCCCCeEEEEEec
Q 011837 275 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--------NRVRHAGPGENLRIRLSG 341 (476)
Q Consensus 275 ~~~~v~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~--------~~v~~a~aG~~v~l~l~~ 341 (476)
++++|+++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999995 478999999999999999999999999999999999994 899999999999999999
Q ss_pred cCccCceeeeEEecCCC-CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 011837 342 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 420 (476)
Q Consensus 342 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~ 420 (476)
++..++++||+|+++++ ++..++.|+|++.||+ +..+|.+||++.+|||+.+++|+|.+|.+++|.++++. +++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~ 423 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 423 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECS--CSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCS
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCcc
Confidence 99999999999999997 8899999999999953 23789999999999999999999999999999999876 67899
Q ss_pred eecCCCEEEEEEEE---cceEEeecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 421 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 421 ~l~~g~~a~v~~~~---~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
+|++||.|.|+|++ .+|+|+|+|.+|+.+|||+||++|+|+|+|+|+++..
T Consensus 424 ~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 424 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 99999999999999 8899999999999999999999999999999998764
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-75 Score=623.63 Aligned_cols=424 Identities=33% Similarity=0.578 Sum_probs=394.5
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|+|||||+++|++..+.+..+.+.++.+++.+.|++++.++|++|....|+.+|+|++.....+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.++.++|||||||++|.+++..+++.+|++|||||++.|.++++|+..+|+++|+.++..++++++|||+||||+ .+|
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cch
Confidence 999999999999999999999999999999999999999999888888999999999999999889999999999 668
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccC-CCCCCCcchHHHHhhcc--CC----CCCCCCC
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI--EI----TPRDPNG 273 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~-~~~w~~g~~l~~~l~~i--~~----~~~~~~~ 273 (476)
++.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|.++|+.+ .. |.+..+.
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~ 399 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 399 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCS
T ss_pred hHHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCccccccc
Confidence 88999999999999999988852 35799999999999999976532 38999999999999987 22 3456789
Q ss_pred CeEEEEEEEEc-----cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC--------CeeeeecCCCCeEEEEEe
Q 011837 274 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLS 340 (476)
Q Consensus 274 p~~~~v~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~--------~~~v~~a~aG~~v~l~l~ 340 (476)
|++++|+++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+|+|+
T Consensus 400 p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~ 479 (611)
T 3izq_1 400 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 479 (611)
T ss_dssp CCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEES
T ss_pred chhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEee
Confidence 99999999995 47899999999999999999999999999999999998 489999999999999999
Q ss_pred ccCccCceeeeEEecCCC-CcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccc
Q 011837 341 GIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKV 419 (476)
Q Consensus 341 ~~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~ 419 (476)
+++..+++||++|+++++ ++..++.|+|++.||+ ++.+|.+||++++|||+.+++|+|..|.+++|.+|++. +++|
T Consensus 480 ~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~ 556 (611)
T 3izq_1 480 KAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKI 556 (611)
T ss_dssp SCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECS--CSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCS
T ss_pred eccHhhCcceEEccCCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCc
Confidence 999999999999999998 8899999999999953 13789999999999999999999999999999999876 6789
Q ss_pred eeecCCCEEEEEEEE---cceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 420 LFVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 420 ~~l~~g~~a~v~~~~---~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
++|++|+.|.|+|++ .+|+|+|+|++++.+|||+||++|+|||+|+|++|.
T Consensus 557 ~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 557 RHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 999999999999999 789999999999999999999999999999999985
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-75 Score=616.13 Aligned_cols=417 Identities=33% Similarity=0.597 Sum_probs=328.7
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
+...++++||+++||+|+|||||+++|++.++.+..+.+.++.+.+.+.|+.++.++|++|...+|+++|+|++.....+
T Consensus 171 ~~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~ 250 (592)
T 3mca_A 171 QSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF 250 (592)
T ss_dssp GSCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred hccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
.++++.++|||||||.+|.++|+.+++.+|++|||||++.|.+++++...+|+++|+.++..+++|++|||+||||+ .
T Consensus 251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl--~ 328 (592)
T 3mca_A 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL--M 328 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--G
T ss_pred EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--c
Confidence 99999999999999999999999999999999999999999998888555899999999999999889999999999 6
Q ss_pred CccHHHHHHHHHHHHHHH-HhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEE
Q 011837 199 NWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~ 277 (476)
+|++++++++.+++..++ +.+|+.. .+++++|+||++|.|+.++.....++||+|++|++.|..+.+|.+..+.|+++
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~ 407 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRL 407 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEE
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchh
Confidence 788899999999999999 8888862 36799999999999999876655799999999999999887777888999999
Q ss_pred EEEEEEc-cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeee-ecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 278 PIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 278 ~v~~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
+|+++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ +|.||++|+|+|+|++..++++|++|++
T Consensus 408 ~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~ 487 (592)
T 3mca_A 408 SIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487 (592)
T ss_dssp EEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEEC
T ss_pred eeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEecc
Confidence 9999985 6788999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCcccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEE-
Q 011837 356 VAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ- 433 (476)
Q Consensus 356 ~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~- 433 (476)
++.|+..++.|+|++.|| .+ .++..||++.+|||+.+++|+| .|.. ..++.|++|++|+.+.|+|+
T Consensus 488 ~~~~~~~~~~f~a~v~~~---~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~f 555 (592)
T 3mca_A 488 YENPVRRVRSFVAEIQTF---DIHGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISF 555 (592)
T ss_dssp SSSCCEEESEEEEEEEEC---SCSSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEE
T ss_pred CCCCccccCeEEEEEEEE---CCCccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEE
Confidence 998888999999999995 44 7899999999999999999999 7765 12456889999999999999
Q ss_pred EcceEEeecccCccccceEEEEeCCcEEEEEEEEEcC
Q 011837 434 VNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 470 (476)
Q Consensus 434 ~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~ 470 (476)
+.+|+|+|+|++|+.+|||+||++|+|+|+|+|++|.
T Consensus 556 l~~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 556 LDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp SSSCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred CCCcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9999999999999999999999999999999999873
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.4e-70 Score=563.86 Aligned_cols=408 Identities=25% Similarity=0.434 Sum_probs=353.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc--cchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.++.++|+++||+|+|||||+++|++..+.+....+.++.+.+...|. .++.+++.+|..++|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 456799999999999999999999999988877766555544444443 567788899999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
++++.++|||||||++|.+++..+++.+|++|||+|+++|.+ .|+++|+.++..++++++|+|+||+|+ .+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--NG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--TT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--Cc
Confidence 999999999999999999999999999999999999999875 699999999999999889999999999 66
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
|++++++++.+++..+++.+++. ..+++++++||++|.|+.++++. ++||.|++|.++|+.++.|....+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 67788888999999999988742 12579999999999999998764 8999999999999999988888889999999
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 280 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 280 ~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++++ ..|+.+.|+|.+|+|++||.|.++|++...+|++|++++.++++|.||++|+++++ +..++++||+|+.++
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHAD 326 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCC
Confidence 99984 46778999999999999999999999999999999999999999999999999998 456799999999999
Q ss_pred CCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011837 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
++|..++.|+|++.| ++..++..||++++|+|+.+++|+|..+.+++|.++++ ++++++|++||.+.|+|++++|
T Consensus 327 ~~~~~~~~f~a~~~~---l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p 401 (434)
T 1zun_B 327 NVPQVSDAFDAMLVW---MAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAP 401 (434)
T ss_dssp SCCCEEEEEEEEEEE---CCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEE
T ss_pred CCCCcccEEEEEEEE---eccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCe
Confidence 988999999999999 44578999999999999999999999999999999987 3678899999999999999999
Q ss_pred EEeecccCccccceEEEEeC--CcEEEEEEEEE
Q 011837 438 ICTEKFADFAQLGRFTLRTE--GKTVAVGKVTE 468 (476)
Q Consensus 438 i~~e~~~~~~~lgrfilr~~--~~tva~G~V~~ 468 (476)
+|+++|.+++.+|||+|||. |+|+|+|+|+.
T Consensus 402 ~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 402 IALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp EECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred EEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 99999999999999999985 89999999973
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=7.3e-63 Score=502.41 Aligned_cols=379 Identities=28% Similarity=0.434 Sum_probs=328.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
|+.++|+++||+|+|||||+++|+... .+.|+..+...+.+|....|+++|+|++.....+++.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 467899999999999999999996532 12233334334457888899999999999988899899
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|||||||++|.++|.++++.+|++|||||+++|.+ .|+++|+.++..+++|++|+++||||+. + ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl~--~-~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADAV--Q-DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGGC--S-CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECcccC--C-CH
Confidence 999999999999999999999999999999999999875 6999999999999999888999999994 3 45
Q ss_pred HHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc--chHHHHhhc-cCCCCCCCCCCeEEEE
Q 011837 203 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g--~~l~~~l~~-i~~~~~~~~~p~~~~v 279 (476)
+.++.+.+++.++++.+++.. ..++++++||++|.|.. .++||.| ..|++.|.. ++.|.+..++|++++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYKG-EETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCc-ccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 677788888999999888752 35799999999999842 2789987 567776655 7888888889999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC--ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEec
Q 011837 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 355 (476)
Q Consensus 280 ~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 355 (476)
+++| ++.|++++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 9998 5889999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred CCCCcccccEEEEEEEEecccC---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEE
Q 011837 356 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 432 (476)
Q Consensus 356 ~~~~~~~~~~f~a~i~~~~~~~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~ 432 (476)
++ ++.+++.|+|++.||+... +.++..||++.+|+++.+++|+|. +. + .++++++|+.+.|+|
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------~------~~~~l~~~~~~~v~~ 354 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------P------GKELAMPGEDLKLTL 354 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------S------SCCCBCTTCEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------C------CcccccCCCEEEEEE
Confidence 88 5677899999999965321 258999999999999999999987 31 1 256799999999999
Q ss_pred EEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCCC
Q 011837 433 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 473 (476)
Q Consensus 433 ~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~ 473 (476)
+|.+|+|+++| +||+||+.++|+|+|+|+++.+..
T Consensus 355 ~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~~ 389 (397)
T 1d2e_A 355 ILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAMT 389 (397)
T ss_dssp EEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCCC
T ss_pred EECCeEEEccC------CeEEEEeCCeEEEEEEEeecccCc
Confidence 99999999986 799999999999999999987653
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.1e-62 Score=499.49 Aligned_cols=385 Identities=29% Similarity=0.455 Sum_probs=327.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc-cchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..++.++|+++||+|+|||||+++|+... .+.|+ ..+...+.+|...+|+.+|+|++.....++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 71 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVA---------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 71 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHH---------------HHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhh---------------hhcCccccccchhhccCCHHHHHcCCCEEeeeeEec
Confidence 34677999999999999999999996521 12232 222223468999999999999999988899
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+.++.++|||||||++|.++|.++++.+|++|+|+|++++.+ .|+++|+..+..+++|++|+++||||+. +
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl~--~ 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDMV--D 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGGC--C
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECcccc--C
Confidence 999999999999999999999999999999999999999875 6999999999999999888999999994 2
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc---cCCCCCCCc-chHHHHhhc-cCCCCCCCCCC
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGP 274 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~---~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p 274 (476)
+++.++.+.+++..+++.+++.. .+++++++||++|.|+.+... ...++||.+ ..|++.|.. +|.|.+..+.|
T Consensus 143 -~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p 220 (405)
T 2c78_A 143 -DPELLDLVEMEVRDLLNQYEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKP 220 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSC
T ss_pred -cHHHHHHHHHHHHHHHHHhcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCC
Confidence 45667778888999999888742 257899999999998654321 123678875 457776655 78788888999
Q ss_pred eEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCcee
Q 011837 275 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 349 (476)
Q Consensus 275 ~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 349 (476)
++++|+++| ++.|++++|+|.+|+|++||.|.++|.+ ...+|++|++++.++++|.|||+|+++|+|++..++++
T Consensus 221 ~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~ 300 (405)
T 2c78_A 221 FLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300 (405)
T ss_dssp CEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCT
T ss_pred cEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCc
Confidence 999999998 5889999999999999999999999988 68999999999999999999999999999999999999
Q ss_pred eeEEecCCCCcccccEEEEEEEEeccc---CcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCC
Q 011837 350 GFVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 426 (476)
Q Consensus 350 G~vl~~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~ 426 (476)
||+|++++ ++.+++.|+|++.||+.. ++.++..||++.+|+++.+++|+|. +. + .++++++||
T Consensus 301 G~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------~------~~~~l~~~~ 366 (405)
T 2c78_A 301 GQVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------P------GVEMVMPGD 366 (405)
T ss_dssp TCEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------T------TCCCBCTTC
T ss_pred eEEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------c------CccccCCCC
Confidence 99999988 567889999999996532 1258999999999999999999987 31 1 256799999
Q ss_pred EEEEEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCC
Q 011837 427 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 471 (476)
Q Consensus 427 ~a~v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~ 471 (476)
.+.|+|++.+|+|+++| +||+||+.|+|+|+|+|+++.+
T Consensus 367 ~~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 367 NVTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp EEEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 99999999999999987 7999999999999999998753
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=4.5e-58 Score=501.87 Aligned_cols=380 Identities=29% Similarity=0.418 Sum_probs=311.2
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|+|||||+++|+.... +.|+..+...+.+|...+|+++|+|++.....+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456789999999999999999999964321 12322222223678889999999999999999999
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCc
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~ 200 (476)
.++.++|||||||++|.++|.++++.+|++|||||+++|.+ .|+++|+.++..+++|++|||+||||+. +
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDLv--~- 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDMV--D- 426 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTTC--C-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeecccc--c-
Confidence 99999999999999999999999999999999999999975 6999999999999999888999999994 3
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCc-chHHHHhhc-cCCCCCCCCCCeEEE
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 278 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g-~~l~~~l~~-i~~~~~~~~~p~~~~ 278 (476)
++++++.+.+++..+++.+++.. .+++++|+||++|.+- ..+||.| ..|++.|.. ++.|.+..+.|++++
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~-~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~p 498 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPG-DDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLP 498 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCT-TTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEE
T ss_pred chhhHHHHHHHHHHHHHhccccc-cceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeee
Confidence 45677788889999999888752 3579999999999542 1468765 456666654 777777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC--ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 279 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 279 v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~--~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
|+++| ++.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++|++|+
T Consensus 499 Id~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 499 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred ccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 99998 5889999999999999999999999988 7899999999999999999999999999999999999999999
Q ss_pred cCCCCcccccEEEEEEEEeccc---CcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEE
Q 011837 355 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 431 (476)
Q Consensus 355 ~~~~~~~~~~~f~a~i~~~~~~---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~ 431 (476)
+++. +.+++.|+|++.|++.. .++++..||++.+|+++.+++|+|. +. ..+++|++||.+.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEEE
Confidence 9885 57789999999996532 1257999999999999999999987 21 125679999999999
Q ss_pred EEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCCC
Q 011837 432 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 473 (476)
Q Consensus 432 ~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~~ 473 (476)
|+|.+|+|++++ +||+||+.|+|+|+|+|+++.++.
T Consensus 645 L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 645 VTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999986 799999999999999999987764
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=3.3e-59 Score=485.37 Aligned_cols=370 Identities=23% Similarity=0.383 Sum_probs=304.4
Q ss_pred cccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEE
Q 011837 38 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 117 (476)
Q Consensus 38 ~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~ 117 (476)
......+.++|+++||+|+|||||+++|+... ....+|...+|+++|+|++..+..
T Consensus 12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~ 67 (482)
T 1wb1_A 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSA 67 (482)
T ss_dssp -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCE
T ss_pred chhhcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEE
Confidence 33444678999999999999999999995211 123467778899999999999999
Q ss_pred EEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 118 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 118 ~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
++++++.++|||||||++|.++|.++++.+|++|||||+++|.. +|+++|+.++..+++|. |+|+||||+
T Consensus 68 ~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip~-IvviNK~Dl-- 137 (482)
T 1wb1_A 68 FKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIPI-IVVITKSDN-- 137 (482)
T ss_dssp EEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCB-CEEEECTTS--
T ss_pred EEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCCE-EEEEECCCc--
Confidence 99999999999999999999999999999999999999999874 69999999999999995 899999999
Q ss_pred cCccHHHHHHHHHHHHHHHHhc-cCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhc-cCCC--CCCCCC
Q 011837 198 VNWSKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEIT--PRDPNG 273 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~~--~~~~~~ 273 (476)
. ++++++++.+++..+++.. ++. +.+++|+||++|.|+.++ .+.|.. ++.| .++.+.
T Consensus 138 ~--~~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L--------------~~~L~~~i~~~~~~~~~~~ 198 (482)
T 1wb1_A 138 A--GTEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDEL--------------KNLIITTLNNAEIIRNTES 198 (482)
T ss_dssp S--CHHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHH--------------HHHHHHHHHHSCCCCCSSS
T ss_pred c--cchhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHH--------------HHHHHHhhcCccccccccc
Confidence 3 2567788888899988877 664 568999999999999984 343333 3233 566778
Q ss_pred CeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 274 PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 274 p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
|++++++++| ++.|++++|+|.+|.|++||.|.++|.+...+|++|+.+++++++|.|||+|+++|++++..++++||
T Consensus 199 ~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gd 278 (482)
T 1wb1_A 199 YFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGX 278 (482)
T ss_dssp CCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSC
T ss_pred cccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccc
Confidence 9999999998 58899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EE-ecCCCCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEE-EEeecCCCccccccceeecCCCEEE
Q 011837 352 VL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 352 vl-~~~~~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~-~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
+| +.++ ++++++.|+|++.|++. ...++..|+++.+|+++.+++|+|..+. +++|.+++.. .+++|++||.+.
T Consensus 279 vl~~~~~-~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~ 353 (482)
T 1wb1_A 279 ILTSKDT-KLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXY 353 (482)
T ss_dssp BCCCTTC-CCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCC
T ss_pred eEecCCC-CCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEE
Confidence 99 6654 66788999999999542 1268999999999999999999999998 7888877532 357899999999
Q ss_pred EEEEEcceEEeecccCccccceEEEEe---C---CcEEEEEEEEEcCC
Q 011837 430 CRIQVNNSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELPT 471 (476)
Q Consensus 430 v~~~~~~pi~~e~~~~~~~lgrfilr~---~---~~tva~G~V~~v~~ 471 (476)
|+|+|++|+|++++ +||+||+ . ++|+|+|+|+++.+
T Consensus 354 v~l~~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 354 XAFELEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp EEEEEEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred EEEEcCccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 99999999999875 7999999 4 79999999998743
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.4e-55 Score=443.00 Aligned_cols=336 Identities=20% Similarity=0.296 Sum_probs=285.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++||+|+|||||+++|+ ++|+|++.....++++++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999982 578999999999999999999
Q ss_pred EEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCcCccHHHH
Q 011837 127 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 205 (476)
Q Consensus 127 liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN-K~Dl~~~~~~~~~~ 205 (476)
|||||||++|.++|+++++.+|++||||| +.|.+ +|+++|+.++..+++|.+|+++| |||+ . ++.+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~----~~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-H----MHAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-C----HHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-C----HHHH
Confidence 99999999999999999999999999999 88875 69999999999999997689999 9998 3 3455
Q ss_pred HHHHHHHHHHHHhccCCcCCCeeEEe--eeccc---ccccccccccCCCCCCCcchHHHHhhccCCCCCC-CCCCeEEEE
Q 011837 206 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 279 (476)
Q Consensus 206 ~~~~~~l~~~l~~~~~~~~~~~~~ip--vSa~~---g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~-~~~p~~~~v 279 (476)
+++.++++++++..++. .++++| +||++ |.|++++.+. |.+.++....+... ...|+++++
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 66778888888776653 579999 99999 9998875332 33443332111112 345689999
Q ss_pred EEEEc--cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeeeEEecCC
Q 011837 280 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 357 (476)
Q Consensus 280 ~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 357 (476)
+++|+ +.|++++|+|.+|+|++||+|.+.|.+...+|++|+++++++++|.|||+|+++|+|++..++++|++|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99995 78999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred CCcccccEEEEEEEEecccCcccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcce
Q 011837 358 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 437 (476)
Q Consensus 358 ~~~~~~~~f~a~i~~~~~~~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~p 437 (476)
.+ +.++.|+|++.|++. +.++..||++.+|+++.+++|+|..|.. |.+ ++ +.+++||.+.|+|++++|
T Consensus 276 ~~-~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~p 343 (370)
T 2elf_A 276 KE-IVTTDYTLECTVSKF--TKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKK 343 (370)
T ss_dssp CC-EEEEEEEEEEEECTT--SCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEEECC--CCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcE
Confidence 35 888999999999542 3789999999999999999999998853 322 21 235689999999999999
Q ss_pred EEeecccCccccceEEEEeCC---cEEEEEEEE
Q 011837 438 ICTEKFADFAQLGRFTLRTEG---KTVAVGKVT 467 (476)
Q Consensus 438 i~~e~~~~~~~lgrfilr~~~---~tva~G~V~ 467 (476)
+|+++|. ||+||+.+ +|+|+|+|.
T Consensus 344 i~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 344 LAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred EEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 9999984 99999965 699999874
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=4.9e-54 Score=439.55 Aligned_cols=344 Identities=24% Similarity=0.399 Sum_probs=286.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++||+|||||||+++|+ |. ..|...+|+++|+|++.++..+.+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~ 57 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALT---GV-------------------------WTDTHSEELRRGITIKIGFADAEI 57 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHH---TC-------------------------CCC--CGGGGSCSSSCCEEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHh---CC-------------------------ccccChhhhcCCcEEEEeeeeeec
Confidence 45778999999999999999999984 21 135567888999999887765444
Q ss_pred C-----------------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH
Q 011837 121 E-----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 121 ~-----------------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
. .+.++|||||||++|.++|+++++.+|++||||||++|.. .+|+++|+..
T Consensus 58 ~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~ 131 (410)
T 1kk1_A 58 RRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMA 131 (410)
T ss_dssp EECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHH
T ss_pred ccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHH
Confidence 1 2789999999999999999999999999999999998851 2699999999
Q ss_pred HHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchH
Q 011837 178 AKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCL 257 (476)
Q Consensus 178 ~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l 257 (476)
+..++++++|+|+||||+... ++..+..+++..+++.... ..++++++||++|.|+.+ |
T Consensus 132 ~~~~~~~~iivviNK~Dl~~~----~~~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L 190 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVDK----EKALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------L 190 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSCH----HHHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------H
T ss_pred HHHcCCCcEEEEEECccCCCH----HHHHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------H
Confidence 999998779999999999432 2333444566666665332 257899999999999987 5
Q ss_pred HHHhhc-cCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeEecCCEEEEecCCc------------eE
Q 011837 258 FEALDR-IEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QV 314 (476)
Q Consensus 258 ~~~l~~-i~~~~~~~~~p~~~~v~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~~p~~~------------~~ 314 (476)
++.|.. ++.|.++.+.|++++|+++|+ .+|++++|+|.+|+|++||.|.++|++. ..
T Consensus 191 ~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~ 270 (410)
T 1kk1_A 191 VKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITT 270 (410)
T ss_dssp HHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCcccccccccccccee
Confidence 565554 787878888999999999983 2688999999999999999999999752 68
Q ss_pred EEEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc-------CcccccCC
Q 011837 315 KVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAG 384 (476)
Q Consensus 315 ~V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G 384 (476)
+|++|+.++.++++|.|||+|+++++ +++..++++|++|++++.+++.++.|+|++.||+.. ...+|..|
T Consensus 271 ~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g 350 (410)
T 1kk1_A 271 EIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRK 350 (410)
T ss_dssp EEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTT
T ss_pred EEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCC
Confidence 99999999999999999999999986 566788999999999998888889999999996532 02679999
Q ss_pred cEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEEEe----CCcE
Q 011837 385 YKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKT 460 (476)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~----~~~t 460 (476)
+++.+|+++.+++|+|..+. ++ .|+++|++|+|++++ .||+||+ .++|
T Consensus 351 ~~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~ 402 (410)
T 1kk1_A 351 EVLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRL 402 (410)
T ss_dssp CEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEEETTEEEE
T ss_pred CEEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEecCC------CEEEEEEecCCCcEE
Confidence 99999999999999998753 12 678889999999987 6999998 5899
Q ss_pred EEEEEEE
Q 011837 461 VAVGKVT 467 (476)
Q Consensus 461 va~G~V~ 467 (476)
+|+|+|+
T Consensus 403 ig~G~i~ 409 (410)
T 1kk1_A 403 IGYGIIK 409 (410)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.5e-54 Score=441.29 Aligned_cols=343 Identities=25% Similarity=0.418 Sum_probs=274.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.++.++|+++||+|||||||+++|+ |. ..+...+|+++|+|++.++..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALT---GV-------------------------WTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHH---SC-------------------------CCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHh---CC-------------------------ccccCcccccCCcEEEecccccccc
Confidence 4577999999999999999999984 21 135557788899999887655433
Q ss_pred --------------C--------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH
Q 011837 121 --------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 178 (476)
Q Consensus 121 --------------~--------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~ 178 (476)
+ .+.++|||||||++|.++|+++++.+|++|||+|+++|.. .+|+++|+..+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHH
Confidence 1 2789999999999999999999999999999999998851 26999999999
Q ss_pred HHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHH
Q 011837 179 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 258 (476)
Q Consensus 179 ~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~ 258 (476)
..++++++|+|+||+|+...++.++.++ ++.++++.... .+++++++||++|.|+.+ |.
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~----~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 189 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYE----QIKEFVKGTIA---ENAPIIPISAHHEANIDV--------------LL 189 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHH----HHHHHHTTSTT---TTCCEEEC------CHHH--------------HH
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHH----HHHHHHhhcCC---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 9999877999999999965443333444 44445554322 257899999999999987 55
Q ss_pred HHhh-ccCCCCCCCCCCeEEEEEEEEc----------cCCeEEEEEEEEeeEecCCEEEEecCCc------------eEE
Q 011837 259 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 315 (476)
Q Consensus 259 ~~l~-~i~~~~~~~~~p~~~~v~~~~~----------~~G~v~~g~v~sG~l~~gd~v~~~p~~~------------~~~ 315 (476)
+.|. .++.|.++.+.|++++|+++|+ .+|++++|+|.+|+|++||.|.++|++. ..+
T Consensus 190 ~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 269 (408)
T 1s0u_A 190 KAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269 (408)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeE
Confidence 6555 4787888889999999999983 2688999999999999999999999742 689
Q ss_pred EEEEEECCeeeeecCCCCeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc-------CcccccCCc
Q 011837 316 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGY 385 (476)
Q Consensus 316 V~si~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~ 385 (476)
|++|+++++++++|.|||+|+++++ +++..++++|++|++++.+++..+.|+|++.||+.. .+.+|..||
T Consensus 270 v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 349 (408)
T 1s0u_A 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349 (408)
T ss_dssp CCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCC
Confidence 9999999999999999999999987 677889999999999998888889999999996532 026799999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccceEEEEe----CCcEE
Q 011837 386 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 461 (476)
Q Consensus 386 ~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lgrfilr~----~~~tv 461 (476)
++.+|+++.+++|+|..+. ++ .++++|++|+|++++ .||+||+ .++|+
T Consensus 350 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~i 401 (408)
T 1s0u_A 350 VLMLNIGTATTAGVITSAR--------------------GD--IADIKLKLPICAEIG------DRVAISRRVGSRWRLI 401 (408)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCEEEEEEEEec--------------------CC--EEEEEECCcEEecCC------CEEEEEEecCCCeEEE
Confidence 9999999999999998753 12 678889999999987 5999999 58999
Q ss_pred EEEEEE
Q 011837 462 AVGKVT 467 (476)
Q Consensus 462 a~G~V~ 467 (476)
|+|+|+
T Consensus 402 g~G~i~ 407 (408)
T 1s0u_A 402 GYGTIE 407 (408)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.5e-50 Score=412.70 Aligned_cols=356 Identities=22% Similarity=0.300 Sum_probs=279.0
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE--
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-- 118 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~-- 118 (476)
..++.++|+++||+|+|||||+++|+..... + ..| +...........+..++++.+.....+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~---~----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTS---K----------KLG---YAETNIGVCESCKKPEAYVTEPSCKSCGS 67 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCC---S----------SSE---EEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccc---c----------ccC---ccccceeeccccccccceecccccccccc
Confidence 3466799999999999999999999531110 0 000 000000011111223333333221111
Q ss_pred ---EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 119 ---ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 119 ---~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
....+.++|+|||||++|.++|..+++.+|++|||+|++++.. ..|+++|+..+..++++++|+|+||||+
T Consensus 68 ~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp CSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 1223789999999999999999999999999999999999862 2699999999999998779999999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhc-cCCCCCCCCCC
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGP 274 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~-i~~~~~~~~~p 274 (476)
.. .+...+..+++.++++..+.. +++++++||++|.|+.+ |++.|.. ++.+.++.+.|
T Consensus 142 ~~----~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~ 200 (403)
T 3sjy_A 142 VS----KEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQK 200 (403)
T ss_dssp SC----HHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSC
T ss_pred cc----hHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCC
Confidence 43 334455666777777665543 67999999999999987 5565554 78788888899
Q ss_pred eEEEEEEEEc--c--------CCeEEEEEEEEeeEecCCEEEEecCCc------------eEEEEEEEECCeeeeecCCC
Q 011837 275 FRMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPG 332 (476)
Q Consensus 275 ~~~~v~~~~~--~--------~G~v~~g~v~sG~l~~gd~v~~~p~~~------------~~~V~si~~~~~~v~~a~aG 332 (476)
++++|+++|. + +|++++|+|.+|+|++||+|.++|++. ..+|++|+++++++++|.||
T Consensus 201 ~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G 280 (403)
T 3sjy_A 201 PVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPG 280 (403)
T ss_dssp CEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSS
T ss_pred cEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCC
Confidence 9999999883 3 789999999999999999999999875 57999999999999999999
Q ss_pred CeEEEEEe---ccCccCceeeeEEecCCCCcccccEEEEEEEEeccc-------CcccccCCcEEEEEEEeEEEEEEEEE
Q 011837 333 ENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVE 402 (476)
Q Consensus 333 ~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~~-------~~~~i~~G~~~~~~~~~~~~~~~i~~ 402 (476)
|+|+++|+ +++..++++|++|++++.+|+.++.|+|++.||+.. .+.+|..|+++.+|+++.++.|+|..
T Consensus 281 ~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~ 360 (403)
T 3sjy_A 281 GLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTS 360 (403)
T ss_dssp SCEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEE
T ss_pred CEEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEE
Confidence 99999987 677789999999999999888899999999997532 14689999999999999999999986
Q ss_pred EEEEeecCCCccccccceeecCCCEEEEEEEEcceEEeecccCccccc-eEEE-EeCC---cEEEEEEEE
Q 011837 403 LLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KTVAVGKVT 467 (476)
Q Consensus 403 i~~~~d~~~~~~~~~~~~~l~~g~~a~v~~~~~~pi~~e~~~~~~~lg-rfil-r~~~---~tva~G~V~ 467 (476)
+. ++ .++++|++|+|++.. . ||+| |+.+ |.+|+|.|+
T Consensus 361 ~~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 361 VK--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EC--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred ec--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 52 11 588899999999875 6 8998 5443 799999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=322.91 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.7
Q ss_pred CCCCeEEEEEEEEccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceee
Q 011837 271 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 350 (476)
Q Consensus 271 ~~~p~~~~v~~~~~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 350 (476)
.++||||+|+++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++++++++|.|||+|+|+|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCcccccEEEEEEEEecccCc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCCEEE
Q 011837 351 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 429 (476)
Q Consensus 351 ~vl~~~~~~~~~~~~f~a~i~~~~~~~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~~~~~~~~~~~l~~g~~a~ 429 (476)
++|++++++|+.++.|+|++.| +++ ++|.+||++.+|+|+.+++|+|.+|.+++|.+|++..+.+|++|++||.|.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~---l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEEC---CSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEE---eCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999888899999999999 445 579999999999999999999999999999999998888899999999999
Q ss_pred EEEEEcceEEeecccCccccceEEEEeCCcEEEEEEEEEcCCC
Q 011837 430 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 472 (476)
Q Consensus 430 v~~~~~~pi~~e~~~~~~~lgrfilr~~~~tva~G~V~~v~~~ 472 (476)
|+|++++|+|+|+|++|+.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998865
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.4e-39 Score=340.14 Aligned_cols=279 Identities=19% Similarity=0.207 Sum_probs=207.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.+||+|+||+|||||||+++||+.+|.+...+.-. .|. .....++|+.+.|++||+||..+...|.|.
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~-------~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~ 98 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVK-------ARK--AARHATSDWMAMERERGISVTTSVMQFPYR 98 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHH-------HC----------------------CTTTEEEEEET
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceee-------cCc--cccccccCChHHHHHCCCcEeeceEEEEEC
Confidence 45689999999999999999999999999886543211 110 112357999999999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.|+|||||||.||..++.++++.+|+||+||||.+|+. .||+..++.+...++| .|++|||||++.++
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad-- 168 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALH-- 168 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCC--
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcc--
Confidence 9999999999999999999999999999999999999984 8999999999999999 67899999997665
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Q 011837 202 KERYDEIESKMTPFLKAS-------------------------------------------------------------- 219 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~-------------------------------------------------------------- 219 (476)
+.++.++++..|...
T Consensus 169 ---~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (548)
T 3vqt_A 169 ---PLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLR 245 (548)
T ss_dssp ---HHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHH
T ss_pred ---hhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhh
Confidence 334444444433210
Q ss_pred ---------cC-------CcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCC---------CCCCC
Q 011837 220 ---------GY-------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGP 274 (476)
Q Consensus 220 ---------~~-------~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~---------~~~~p 274 (476)
+. ....-+|+++.||+++.|+..+ |..+++.+|.|.. +.+.|
T Consensus 246 ~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p 312 (548)
T 3vqt_A 246 MDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEA 312 (548)
T ss_dssp HHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSS
T ss_pred hHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcC
Confidence 00 0012357888899999999874 3345666787753 23578
Q ss_pred eEEEEEEEEc-----cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCcc
Q 011837 275 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 345 (476)
Q Consensus 275 ~~~~v~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~ 345 (476)
|...|..++. ..|.+.++||+||+|+.||.|+....+...+|..+... +.++++|.|||+|+ +.|++
T Consensus 313 ~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIva--i~gl~-- 388 (548)
T 3vqt_A 313 FTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIG--IPNHG-- 388 (548)
T ss_dssp CEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEE--EECSS--
T ss_pred ceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEE--ecCCc--
Confidence 8888887763 47999999999999999999999888888898888775 46899999999999 56664
Q ss_pred CceeeeEEecCCCC
Q 011837 346 DILSGFVLSSVAKP 359 (476)
Q Consensus 346 ~i~~G~vl~~~~~~ 359 (476)
+++.||+|++.+.+
T Consensus 389 ~~~~GDTl~~~~~~ 402 (548)
T 3vqt_A 389 TIKIGDTFTESKEV 402 (548)
T ss_dssp CCCTTCEEESSSSC
T ss_pred cCccCCEecCCCCc
Confidence 58999999987643
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=9.7e-38 Score=328.80 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=204.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
+..+||+++||+|||||||+++|++.+|.++++.+ ..+++|+.+.|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 46899999999999999999999998888765431 2457899999999999999888777664
Q ss_pred ----CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 122 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ----~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
.+.++|||||||.+|..++.++++.+|++|||||+++|.. .|+.+++..+...++| +|+|+||||++.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999874 6999999999999998 889999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEE
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~ 277 (476)
.+ .++..+++... +++. ..+++++||++|.|+.++ |..+++.+|.|..+.+.|+++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 32 23344444433 3443 235899999999999984 444567788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEecc-CccCceeee
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 351 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~ 351 (476)
.|.+++ +..|++++|+|.+|+|++||.|.+.|.+...+|++|..+ +.+++++.|||++.+. .|+ +..++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 999887 567999999999999999999999999999999999875 4689999999987764 555 356799999
Q ss_pred EEecCCCC
Q 011837 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
+|+.++.+
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.2e-36 Score=321.33 Aligned_cols=268 Identities=23% Similarity=0.359 Sum_probs=199.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
+.++||+++||+|||||||+++|++.+|.++.+.+ ..+++|..+.|+++|+|+......+.+.
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~ 65 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKA 65 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEec
Confidence 35799999999999999999999999988765431 2457899999999999999988887775
Q ss_pred ----CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 122 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ----~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
++.++|||||||.+|..++.++++.+|++|||+|+++|.. .|+.+++..+...++| +|+|+||+|++.
T Consensus 66 ~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 3789999999999999999999999999999999999874 7999999999999998 889999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEE
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 277 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~ 277 (476)
.+ .++..+++... +++. ..+++++||++|.|+.++ |..+++.+|.|..+.+.|+++
T Consensus 138 a~-----~~~v~~ei~~~---lg~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~a 193 (599)
T 3cb4_D 138 AD-----PERVAEEIEDI---VGID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQA 193 (599)
T ss_dssp CC-----HHHHHHHHHHH---TCCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCcee
Confidence 32 23344444443 3443 225899999999999984 334567788888888899999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC---CeeeeecCCCCeEEEEEecc-CccCceeee
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 351 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~ 351 (476)
.|.+++ +..|.+++|+|.+|+|+.||.+.+.+.+...+|.+|... ..+++++.|||++.+ +.++ +..++++||
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 999887 568999999999999999999999999998899998874 468899999997765 4455 346799999
Q ss_pred EEecCCCC
Q 011837 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
+|++++.+
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99987754
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-37 Score=331.82 Aligned_cols=274 Identities=24% Similarity=0.279 Sum_probs=199.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
.+++||+|+||+|||||||+++||+.+|.+...+ + ......++|+.+.|++||+||..+...+.|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g------------~-v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG------------E-VHDGAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc------------e-ecCCCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 5789999999999999999999999988654321 0 0012356999999999999999999998875
Q ss_pred ------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
++.|+|||||||.||..++.++++.+|+||+||||.+|+. .||+..++.+...++| .|++|||||+
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 5899999999999999999999999999999999999995 8999999999999999 6789999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhc--------------------------------------------------------
Q 011837 196 HTVNWSKERYDEIESKMTPFLKAS-------------------------------------------------------- 219 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~-------------------------------------------------------- 219 (476)
+.+++ ....++++..+...
T Consensus 150 ~~a~~-----~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 224 (709)
T 4fn5_A 150 QGANF-----LRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSS 224 (709)
T ss_dssp TTCCH-----HHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cCccH-----HHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHH
Confidence 66542 22333333222100
Q ss_pred --------------------cCC-------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCC
Q 011837 220 --------------------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 266 (476)
Q Consensus 220 --------------------~~~-------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~ 266 (476)
.+. ...-.|++..||+++.|+..+ |..+++.+|.
T Consensus 225 ~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPs 291 (709)
T 4fn5_A 225 MVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPA 291 (709)
T ss_dssp HHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCC
T ss_pred HHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCCC
Confidence 000 012346777788888887763 3345566777
Q ss_pred CC--------------------CCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC--
Q 011837 267 TP--------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-- 322 (476)
Q Consensus 267 ~~--------------------~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-- 322 (476)
|. ++.+.|+.+.|..+. +..|.++++||+||+|+.||+|+....++..+|..+...
T Consensus 292 P~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g 371 (709)
T 4fn5_A 292 PTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHA 371 (709)
T ss_dssp TTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCS
T ss_pred CcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeec
Confidence 63 456789999999887 457999999999999999999998777777788887654
Q ss_pred --CeeeeecCCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 323 --DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 323 --~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
..++++|.||++|+ +.|++ ++..|++|++.+.+
T Consensus 372 ~~~~~v~~~~aGdIv~--i~Gl~--~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 372 NQREEIKEVRAGDIAA--LIGMK--DVTTGDTLCSIEKP 406 (709)
T ss_dssp SCCCEESEECTTCEEE--ECSCS--SCCTTCEEECSSSC
T ss_pred ceeeEeeeecCCCeee--ecCCC--cCccCCEecCCCcc
Confidence 57899999999999 57775 48999999987643
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.7e-39 Score=343.91 Aligned_cols=274 Identities=22% Similarity=0.304 Sum_probs=214.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+++||+|+||+|||||||+++||+.+|.+...+ + .-....++|+.+.|++||+||..+...|.|+++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~-v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------S-VDKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------S-CCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------c-cccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 478999999999999999999999999887532 1 012245799999999999999999999999999
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
.|+|||||||.||..++.++++.+|+||+||||.+|+. +||+.++..+..+++| .|++|||||++.+++. .
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~-~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLS-T 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH-H
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHH-H
Confidence 99999999999999999999999999999999999984 8999999999999999 5689999999776642 2
Q ss_pred HHHHHHHHH--------------------------------------HHHHHhccCC-------------cCCCeeEEee
Q 011837 204 RYDEIESKM--------------------------------------TPFLKASGYN-------------VKKDVQFLPI 232 (476)
Q Consensus 204 ~~~~~~~~l--------------------------------------~~~l~~~~~~-------------~~~~~~~ipv 232 (476)
.++++.+.+ ..++....+. ...-.|+++.
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 233332211 0111100000 0123577888
Q ss_pred ecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecC
Q 011837 233 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 310 (476)
Q Consensus 233 Sa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~ 310 (476)
||+++.|+..+ |..+++.+|.|....+.|+...|.+++ +..|.++++||+||+|+.||.|++...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999998873 333556788888888899999888876 467999999999999999999987654
Q ss_pred CceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeeeEEecCCC
Q 011837 311 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 311 ~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 358 (476)
+ ..+|..+... ..++++|.|||+|++ .+ ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3455555543 568999999999984 43 45678888887653
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.1e-34 Score=301.08 Aligned_cols=276 Identities=19% Similarity=0.225 Sum_probs=213.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+|+||+|+|||||+++|++..|.+...+.-. .++ ......+|+...|+++|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK-------SRK--AARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH-------TC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee-------ccc--cccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 4578999999999999999999999988875432111 000 0112346777888999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|+|+|+..+.. .|+..++..+...++| +|+|+||+|+...+ ..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~-------~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~-~~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVE-------PRTIKLMEVCRLRHTP-IMTFINKMDRDTRP-SI 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHHTTTCC-EEEEEECTTSCCSC-HH
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCCcccc-HH
Confidence 999999999999999999999999999999999999874 6899999999999998 88999999996543 12
Q ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Q 011837 203 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 219 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~--------------------------------------------------------------- 219 (476)
+.+++ +.+.+...
T Consensus 153 ~~l~e----i~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e 228 (528)
T 3tr5_A 153 ELLDE----IESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRN 228 (528)
T ss_dssp HHHHH----HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHH
T ss_pred HHHHH----HHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhh
Confidence 22333 32222110
Q ss_pred ---------------cCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCC---------CCCCe
Q 011837 220 ---------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPF 275 (476)
Q Consensus 220 ---------------~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~---------~~~p~ 275 (476)
.+.....+|++++||++|.|+.++ |..+++.+|.|... .+.|+
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~L-------------ld~i~~~~p~p~~~~~~~~~~~~~~~~~ 295 (528)
T 3tr5_A 229 EIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGEL-------------LDAFVKEAPPPQGRETNSRLVKPEEEKF 295 (528)
T ss_dssp HHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCCCCBCBSSSCBCTTSSSC
T ss_pred hcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHH-------------HHHHHHhCCCCCcccccceeeCCCcccc
Confidence 000012348999999999999984 33344556666432 25788
Q ss_pred EEEEEEEE----c-cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccC
Q 011837 276 RMPIIDKF----K-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 346 (476)
Q Consensus 276 ~~~v~~~~----~-~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~ 346 (476)
...|.++. + .+|+++++||.||+|+.||.|++.+.++..+|.++... +.++++|.|||+|+ +.++ .+
T Consensus 296 ~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~--~~~l--~~ 371 (528)
T 3tr5_A 296 SGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIG--LHNH--GT 371 (528)
T ss_dssp EEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEE--EEES--SS
T ss_pred eeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEE--EcCC--CC
Confidence 88888875 2 67999999999999999999999999999999998763 67899999999998 4554 45
Q ss_pred ceeeeEEecCC
Q 011837 347 ILSGFVLSSVA 357 (476)
Q Consensus 347 i~~G~vl~~~~ 357 (476)
++.||+|++..
T Consensus 372 ~~~GDtl~~~~ 382 (528)
T 3tr5_A 372 IQIGDTFTQGE 382 (528)
T ss_dssp CCTTCEEESSC
T ss_pred CccCCEEcCCC
Confidence 88999999743
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3e-33 Score=302.20 Aligned_cols=274 Identities=23% Similarity=0.247 Sum_probs=217.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..+||+|+||+|||||||+++|++.+|.+...+- .. ...+++|+.+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~-------v~------~g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGE-------VH------DGAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccc-------cC------CCceeecChhhHHhcCceeeeceEEEEEC
Confidence 356799999999999999999999988886654210 00 12457899999999999999998888888
Q ss_pred C-------eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 122 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~-------~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
+ +.++|||||||.+|...+.++++.+|++|+|||++.|.. .|+.+++..+...++| +++++||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 999999999999999999999999999999999999874 6999999999999999 778999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhcc--------------------------CC--------------------------
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASG--------------------------YN-------------------------- 222 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~--------------------------~~-------------------------- 222 (476)
+...+ ++++.++++..+.... |.
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 95543 3344444443332100 00
Q ss_pred -------------------------------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccC
Q 011837 223 -------------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 265 (476)
Q Consensus 223 -------------------------------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~ 265 (476)
....+|+++.||++|.|+..+ |..+++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~L-------------Ld~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAM-------------LDAVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHH-------------HHHHHHHCC
Confidence 001257888899998888774 333455566
Q ss_pred CCCC--------------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-
Q 011837 266 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 322 (476)
Q Consensus 266 ~~~~--------------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~- 322 (476)
+|.. +.+.|+.+.|.+++ +..|+++++||+||+|+.||.|+..+.+...+|.+|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 6532 25679999999988 468999999999999999999999988888999998864
Q ss_pred ---CeeeeecCCCCeEEEEEeccCccCceeeeEEecCCC
Q 011837 323 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 323 ---~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 358 (476)
..++++|.|||+|++ .|++ ++++||+|++++.
T Consensus 368 g~~~~~v~~~~aGdIv~i--~gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAA--IGLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEE--eCcc--cCccCCEEeCCCc
Confidence 678999999999996 4664 4799999998764
No 25
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.9e-33 Score=292.73 Aligned_cols=275 Identities=19% Similarity=0.224 Sum_probs=187.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++||+|||||||+++|++..|.+....... ++. .....++|+.+.|+.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~--------~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK--------GRG-SNQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee--------cCc-cccceeeccchhcccCCcceeeeEEEEEECC
Confidence 4579999999999999999999998777664321100 000 0012357888899999999999999999999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
+.++|||||||.+|...+.++++.+|++|+|+|+..+.. .|+++++..+...++| +++++||+|+...+.
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-------~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-- 151 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-------DRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-- 151 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-------HHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-------HHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--
Confidence 999999999999999999999999999999999999863 6899999999889999 889999999965431
Q ss_pred HHHHHHHHHHHHHHHhccCC------------------------------------------------------------
Q 011837 203 ERYDEIESKMTPFLKASGYN------------------------------------------------------------ 222 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~~~~~~------------------------------------------------------------ 222 (476)
.++.+++...+......
T Consensus 152 ---~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~ 228 (529)
T 2h5e_A 152 ---MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLR 228 (529)
T ss_dssp ---HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHH
T ss_pred ---HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhh
Confidence 23333444333211000
Q ss_pred -------------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHh-hccCCCCCC---------CCC
Q 011837 223 -------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEAL-DRIEITPRD---------PNG 273 (476)
Q Consensus 223 -------------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l-~~i~~~~~~---------~~~ 273 (476)
....+|+++.||++|.|+.. |++.+ +.+|+|... .+.
T Consensus 229 e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~ 294 (529)
T 2h5e_A 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASED 294 (529)
T ss_dssp HHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCC
T ss_pred cccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCC
Confidence 00012344444444444443 45543 446666432 146
Q ss_pred CeEEEEEEEEc-----cCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCc
Q 011837 274 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 344 (476)
Q Consensus 274 p~~~~v~~~~~-----~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~ 344 (476)
||...|..+.. .+|++++|||.||+|+.||.|++.+.++..+|++|+.+ +.++++|.|||+|++ .++
T Consensus 295 ~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l-- 370 (529)
T 2h5e_A 295 KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH-- 370 (529)
T ss_dssp SCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--
T ss_pred CeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--
Confidence 88888887742 47999999999999999999999999999999999975 678999999999984 555
Q ss_pred cCceeeeEEecCC
Q 011837 345 EDILSGFVLSSVA 357 (476)
Q Consensus 345 ~~i~~G~vl~~~~ 357 (476)
.+++.||+|++++
T Consensus 371 ~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 371 GTIQIGDTFTQGE 383 (529)
T ss_dssp SCCCTTCEEESSC
T ss_pred CCCccCCEeecCC
Confidence 4588999999876
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.4e-32 Score=293.73 Aligned_cols=275 Identities=23% Similarity=0.271 Sum_probs=199.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..+||+++||+|||||||+++|++..|.+...+.. . ....++|+...|+++|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v-------~------~~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-------H------EGAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee-------c------CCceeccCchhhhhcccccccceEEEEEC
Confidence 4568999999999999999999999888766432200 0 11356888899999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .|+.+++..+...++| +++|+||+|+...+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 9999999999999999999999999999999999999874 6889999999999999 78899999996543
Q ss_pred HHHHHHHHHHHHHHHHhc--------------------------------c-----------------------------
Q 011837 202 KERYDEIESKMTPFLKAS--------------------------------G----------------------------- 220 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~--------------------------------~----------------------------- 220 (476)
+.++.++++..+... |
T Consensus 146 ---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 ---LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp ---HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 233333343332210 0
Q ss_pred --------------CC-------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCC----
Q 011837 221 --------------YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 269 (476)
Q Consensus 221 --------------~~-------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~---- 269 (476)
+. ...-+|+++.||++|.|+..+ |..+++.+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-------------LDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-------------HHHHHHHSCCTTTSCCE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-------------HHHHHHhCCChhhcccc
Confidence 00 001257888899999888774 3335566777653
Q ss_pred --------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeeeec
Q 011837 270 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 329 (476)
Q Consensus 270 --------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a 329 (476)
+.+.|+.+.|.+++ +..|+++++||.||+|+.||.|+..+.+...+|..|... ..++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 369 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEEL 369 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEccee
Confidence 35789999999987 568999999999999999999999888888888888764 5789999
Q ss_pred CCCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 330 GPGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 330 ~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
.|||++++ .|++ +++.||+|++++.+
T Consensus 370 ~aGdI~~i--~gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 370 KAGDLGAV--VGLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp ETTCEEEE--ECCS--SCCTTCEEEETTCC
T ss_pred cCCCEEEE--eCcc--cCccCCEEecCCCc
Confidence 99999996 4664 47889999987654
No 27
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=9.3e-35 Score=302.39 Aligned_cols=252 Identities=26% Similarity=0.370 Sum_probs=196.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~ 122 (476)
+.++|+++||+|||||||+++|....- .....+|+|.+.....+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 357899999999999999999953210 1123467888887777776 56
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
..++|||||||++|..++.++++.+|++|||+|+++|.+ +|+.+|+..+...++| +|||+||+|++..++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 789999999999999999999999999999999999885 6999999999999998 89999999996543221
Q ss_pred HHHHHHHHHHHHH---HHhccCCcCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCCCCCCeEEEE
Q 011837 203 ERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 279 (476)
Q Consensus 203 ~~~~~~~~~l~~~---l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~~~~p~~~~v 279 (476)
+.+++..+ +..+ ...++++++||++|.|+.++.+. +...++ .+.+..+++.|++++|
T Consensus 124 -----v~~~l~~~~~~~e~~----~~~~~iv~vSAktG~GI~eLle~----------I~~l~~-~~~~~~~~~~~~~~~V 183 (537)
T 3izy_P 124 -----VKKELLAYDVVCEDY----GGDVQAVHVSALTGENMMALAEA----------TIALAE-MLELKADPTGAVEGTV 183 (537)
T ss_dssp -----SSSHHHHTTSCCCCS----SSSEEECCCCSSSSCSSHHHHHH----------HHHHHT-TCCCCCCSSSSEEEEE
T ss_pred -----HHHHHHhhhhhHHhc----CCCceEEEEECCCCCCchhHHHH----------HHHhhh-cccccCCCCCCcceeE
Confidence 11222211 1111 13579999999999999986432 333333 2334456678999999
Q ss_pred EEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEECC-eeeeecCCCCeEEEEEeccCccCceeeeEEecC
Q 011837 280 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 280 ~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
.+++ ++.|++++|+|.+|+|++||.+. ++....+|++|+.++ .++++|.||++|+| .|++ ....+||+++.+
T Consensus 184 ~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~--~g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~ 258 (537)
T 3izy_P 184 IESFTDKGRGPVTTAIIQRGTLRKGSILV--AGKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEV 258 (537)
T ss_dssp EEECCCTTCCCCEEEEEEEECCSSEEEEC--CSSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSC
T ss_pred EEEEEeCCCceEEEEEEecCEEEcCCEEE--eCCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEec
Confidence 9998 57899999999999999999874 455668999999985 79999999999985 5666 335899999988
Q ss_pred CCC
Q 011837 357 AKP 359 (476)
Q Consensus 357 ~~~ 359 (476)
+++
T Consensus 259 ~~~ 261 (537)
T 3izy_P 259 ESE 261 (537)
T ss_dssp CSS
T ss_pred CCh
Confidence 654
No 28
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.2e-33 Score=291.58 Aligned_cols=248 Identities=29% Similarity=0.362 Sum_probs=192.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++||+|||||||+++|+... + .....+|+|++.....++++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v-----------------------------~~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--V-----------------------------ASGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--H-----------------------------SBTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--C-----------------------------ccccCCCeeEeEEEEEEEECCE
Confidence 56899999999999999999985311 0 1112478999988888888899
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
.++|||||||++|..++.++++.+|++|||+|+++|.+ +||++|+..+..+++| +|+++||||++..++.
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~-- 121 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD-- 121 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC--
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHH--
Confidence 99999999999999999999999999999999999875 7999999999999999 8999999999543321
Q ss_pred HHHHHHHHHHHHHHhccCCc---CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhc---cCCCCCCCCCCeEE
Q 011837 204 RYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR---IEITPRDPNGPFRM 277 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~---~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~---i~~~~~~~~~p~~~ 277 (476)
+ +.++ +...++.+ ...++++++||++|.|+.++ ++.|.. +..+...++.|++.
T Consensus 122 ~---v~~~----l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL--------------le~I~~~~~~~~~~~~~~~~~~~ 180 (501)
T 1zo1_I 122 R---VKNE----LSQYGILPEEWGGESQFVHVSAKAGTGIDEL--------------LDAILLQAEVLELKAVRKGMASG 180 (501)
T ss_dssp C---TTCC----CCCCCCCTTCCSSSCEEEECCTTTCTTCTTH--------------HHHTTTTCCCSTTTSCCCSBCEE
T ss_pred H---HHHH----HHHhhhhHHHhCCCccEEEEeeeeccCcchh--------------hhhhhhhhhhhcccccccccccc
Confidence 1 1111 11111110 12479999999999999984 443322 22233455778899
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC-CeeeeecCCCCeEEEEEeccCccCceeeeEEe
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 354 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 354 (476)
.|.+++ ++.|++++|+|.+|+|++||.+.+.+ ...+|++|+.. +.++++|.||+.|.+. |++. ....|++++
T Consensus 181 ~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~~ 255 (501)
T 1zo1_I 181 AVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEVT 255 (501)
T ss_dssp EEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEEE
T ss_pred ceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEEE
Confidence 999988 57899999999999999999999865 45699999864 6799999999999853 5542 247899998
Q ss_pred cCCC
Q 011837 355 SVAK 358 (476)
Q Consensus 355 ~~~~ 358 (476)
...+
T Consensus 256 ~~~~ 259 (501)
T 1zo1_I 256 VVRD 259 (501)
T ss_dssp EECS
T ss_pred ecCC
Confidence 6553
No 29
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.2e-31 Score=287.50 Aligned_cols=274 Identities=23% Similarity=0.260 Sum_probs=198.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++||+|+|||||+++|++..|.+....- . . .....+|+...|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~------v-~------~~~~~~D~~~~e~~~giTi~~~~~~~~~~ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE------T-H------EGASQMDWMEQEQDRGITITSAATTAAWE 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc------c-c------CCceecccchhhhhcCceEeeeeEEEEEC
Confidence 456799999999999999999999988777653210 0 0 01356788899999999999999999999
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++..++..+...++| +|+|+||+|+...+
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999999874 5888899999999998 78999999995432
Q ss_pred HHHHHHHHHHHHHHHHhcc--------------------------CC-c-------------------------------
Q 011837 202 KERYDEIESKMTPFLKASG--------------------------YN-V------------------------------- 223 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~--------------------------~~-~------------------------------- 223 (476)
+.++.++++..+.... |. .
T Consensus 144 ---~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e 220 (693)
T 2xex_A 144 ---FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAE 220 (693)
T ss_dssp ---HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444432100 00 0
Q ss_pred ------------------------------CCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCC----
Q 011837 224 ------------------------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 269 (476)
Q Consensus 224 ------------------------------~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~---- 269 (476)
..-+|+++.||++|.|+..+ |..+++.+|.|..
T Consensus 221 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 221 TSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-------------LDAVIDYLPSPLDVKPI 287 (693)
T ss_dssp TCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCGGGSCCE
T ss_pred CCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-------------HHHHHHHCCCchhcccc
Confidence 01146777777777777653 2334556776643
Q ss_pred ----------------CCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----Ceeee
Q 011837 270 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 327 (476)
Q Consensus 270 ----------------~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~ 327 (476)
+.+.||.+.|.+++ +..|+++++||.||+|+.||+|+....+...+|.+|... ..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 35789999999988 567999999999999999999999888888899998764 47899
Q ss_pred ecCCCCeEEEEEeccCccCceeeeEEecCCC
Q 011837 328 HAGPGENLRIRLSGIEEEDILSGFVLSSVAK 358 (476)
Q Consensus 328 ~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 358 (476)
+|.|||++++ .|++ +++.||+|++.+.
T Consensus 368 ~~~aGdI~~i--~gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 368 TVYSGDIAAA--VGLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp EEETTCEEEE--ESCS--SCCTTCEEEETTC
T ss_pred ccCcCCEEEE--eCcc--cCccCCEEecCCC
Confidence 9999999996 4664 4788999998764
No 30
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.98 E-value=1.8e-31 Score=287.13 Aligned_cols=271 Identities=24% Similarity=0.286 Sum_probs=213.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++||+|||||||+++|++..+.+...+ .- .....++|....|+.+|+|+......+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G------------~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRG------------RV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC------------CG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccc------------ee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 4578999999999999999999998777543221 00 1234568888999999999999888899999
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccH
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 202 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~ 202 (476)
..++|||||||.+|...+.++++.+|++++|+|+..|.. .|+++++..+...++| +|+++||+|+. ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-------~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--- 141 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-------VGTERAWTVAERLGLP-RMVVVTKLDKG-GD--- 141 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECGGGC-CC---
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-------hhHHHHHHHHHHccCC-EEEEecCCchh-hh---
Confidence 999999999999999999999999999999999999874 6999999999999998 77899999995 32
Q ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Q 011837 203 ERYDEIESKMTPFLK----------------------------------------------------------------- 217 (476)
Q Consensus 203 ~~~~~~~~~l~~~l~----------------------------------------------------------------- 217 (476)
++++.+++...+.
T Consensus 142 --~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 142 --YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp --HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 2233333333222
Q ss_pred ------hccCC-------------cCCCeeEEeeecccccccccccccCCCCCCCcchHHHHhhccCCCCCC-CCCCeEE
Q 011837 218 ------ASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRM 277 (476)
Q Consensus 218 ------~~~~~-------------~~~~~~~ipvSa~~g~~i~~~~~~~~~~w~~g~~l~~~l~~i~~~~~~-~~~p~~~ 277 (476)
...+. ....+|++++||++|.|+.++ |..+++.+|.|... .+.|+.+
T Consensus 220 ~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~~ 286 (665)
T 2dy1_A 220 LEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPLA 286 (665)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCEE
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeEE
Confidence 00000 001268888899999888874 33345667766543 6789999
Q ss_pred EEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCceEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 278 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 278 ~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
.|.+++ +..|++++|||.||+|+.||.|++.+ ...+|.+|... ..++++|.||++|++ .+++ ++++||
T Consensus 287 ~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gd 360 (665)
T 2dy1_A 287 KVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGM 360 (665)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTC
T ss_pred EEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCC
Confidence 999988 56899999999999999999999877 66788888763 568999999999995 5664 588999
Q ss_pred EEecCCCC
Q 011837 352 VLSSVAKP 359 (476)
Q Consensus 352 vl~~~~~~ 359 (476)
+|++++.+
T Consensus 361 tl~~~~~~ 368 (665)
T 2dy1_A 361 VLWQGEKP 368 (665)
T ss_dssp EEESSSCC
T ss_pred EEecCCCc
Confidence 99987653
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.97 E-value=1.3e-31 Score=283.23 Aligned_cols=263 Identities=21% Similarity=0.369 Sum_probs=190.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe--
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 120 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-- 120 (476)
.+.++|+++||+|||||||+++|+.... .+. ..+|+|.+.+...+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v---------------------------~~~----e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAV---------------------------ASR----EAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHH---------------------------SCC--------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccC---------------------------ccc----cCCceecccCeEEEeech
Confidence 3468999999999999999999964321 010 0124444433333322
Q ss_pred ----------------CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc
Q 011837 121 ----------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 121 ----------------~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~ 184 (476)
....++|||||||++|...+.++++.+|++|||+|+++|+. +||.+++..+...++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe
Confidence 12369999999999999999999999999999999999974 7999999999999999
Q ss_pred eEEEEEEccCCCCcCcc------------------HHHHHHHHHHHHHHHHhccCCc---------CCCeeEEeeecccc
Q 011837 185 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 237 (476)
Q Consensus 185 ~iIvviNK~Dl~~~~~~------------------~~~~~~~~~~l~~~l~~~~~~~---------~~~~~~ipvSa~~g 237 (476)
+|+|+||||+... |. .+.+.+...++...+...++.. ...++++|+||++|
T Consensus 125 -iIVViNKiDl~~~-~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGSTT-CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEecccccccc-cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8899999999532 22 1234444445555555555431 23569999999999
Q ss_pred cccccccccCCCCCCCcchHHHHhhc-cC-CCCCCCCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCc-
Q 011837 238 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 312 (476)
Q Consensus 238 ~~i~~~~~~~~~~w~~g~~l~~~l~~-i~-~~~~~~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~- 312 (476)
.|+.++.+. +...+.. ++ ....+.+.|+++.|.+++ ++.|++++++|.+|+|++||.|.++|.+.
T Consensus 203 ~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~ 272 (594)
T 1g7s_A 203 EGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272 (594)
T ss_dssp TTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE
T ss_pred CCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc
Confidence 999985332 3322222 11 112345789999999987 56799999999999999999999999876
Q ss_pred -eEEEEEEEEC------------CeeeeecC--CCCeEEEEEeccCccCceeeeEEecCCCC
Q 011837 313 -QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAKP 359 (476)
Q Consensus 313 -~~~V~si~~~------------~~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 359 (476)
.++|++|... ..++++|. +|+.++ +.++ .++..|+.|+...++
T Consensus 273 ~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l--~~~~~Gd~l~~~~~~ 330 (594)
T 1g7s_A 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGI--DDVMAGSPLRVVTDP 330 (594)
T ss_dssp EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSC--TTBCTTCEEEECSSH
T ss_pred eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--Eccc--CCCCCCCEEEecCCH
Confidence 4499999753 35677887 676666 4544 347899999987643
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.96 E-value=1.4e-28 Score=270.67 Aligned_cols=290 Identities=19% Similarity=0.264 Sum_probs=199.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+..+||+|+||+|||||||+++|++..|.+..... | ....+|....|+++|+|+......+.+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~ 79 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------G-----EARFTDTRKDEQERGITIKSTAISLYS 79 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEE
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------C-----CceeecCchhhhhcceeEeeceeEEEe
Confidence 3456899999999999999999999998888765420 1 134578889999999999988777666
Q ss_pred C----------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc
Q 011837 121 E----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 184 (476)
Q Consensus 121 ~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~ 184 (476)
. ++.++|||||||.+|...+.++++.+|++|+|+|+.+|.. .|+..++..+...++|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p 152 (842)
T 1n0u_A 80 EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK 152 (842)
T ss_dssp ECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC
Confidence 4 6889999999999999999999999999999999999874 6888888888888998
Q ss_pred eEEEEEEccCCCCcC--cc----HHHHHHHHHHHHHHHHhcc--------CCcCCCeeEEeeeccccccccc--c-----
Q 011837 185 KLLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKT--R----- 243 (476)
Q Consensus 185 ~iIvviNK~Dl~~~~--~~----~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~ipvSa~~g~~i~~--~----- 243 (476)
+|+++||+|+...+ ++ ...++++.++++..+..+. +.+ ...++...|+++|+++.- .
T Consensus 153 -~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p-~~~~v~~~sa~~g~~~~~~~f~~~y~ 230 (842)
T 1n0u_A 153 -PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP-ARGTVAFGSGLHGWAFTIRQFATRYA 230 (842)
T ss_dssp -EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCG-GGTCEEEEETTTTEEEEHHHHHHHHH
T ss_pred -eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeece-EEeeeEEeecccccccchhhhhhhcc
Confidence 78999999984211 11 2346666777777665321 221 122567789988866320 0
Q ss_pred --ccc-----CCCCC---C-C----------------------------------------------------c------
Q 011837 244 --VDK-----SLCPW---W-N----------------------------------------------------G------ 254 (476)
Q Consensus 244 --~~~-----~~~~w---~-~----------------------------------------------------g------ 254 (476)
... ...-| | + |
T Consensus 231 ~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~ 310 (842)
T 1n0u_A 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGD 310 (842)
T ss_dssp TTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGG
T ss_pred hhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHH
Confidence 000 00011 0 0 0
Q ss_pred ---------------------chHHH-HhhccCCCC-------------------------CCCCCCeEEEEEEEE--cc
Q 011837 255 ---------------------PCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKF--KD 285 (476)
Q Consensus 255 ---------------------~~l~~-~l~~i~~~~-------------------------~~~~~p~~~~v~~~~--~~ 285 (476)
..|++ +++.+|+|. ++.+.|+.+.|..++ +.
T Consensus 311 e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~ 390 (842)
T 1n0u_A 311 EKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSD 390 (842)
T ss_dssp GGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSS
T ss_pred HHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCC
Confidence 22232 223456553 356789999999987 46
Q ss_pred CCe-EEEEEEEEeeEecCCEEEEecCC------c---eEEEEEEEEC----CeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 286 MGT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 286 ~G~-v~~g~v~sG~l~~gd~v~~~p~~------~---~~~V~si~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
.|. +.++||+||+|+.||.|++...+ . ..+|..|... ..++++|.|||+|+ +.|++...++.|
T Consensus 391 ~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~~t~- 467 (842)
T 1n0u_A 391 KGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG--LVGIDQFLLKTG- 467 (842)
T ss_dssp TTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE--EESCTTTCCSSE-
T ss_pred CCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE--EEccccceecce-
Confidence 796 89999999999999999876332 2 4788888765 57899999999998 677766444556
Q ss_pred EEecCC
Q 011837 352 VLSSVA 357 (476)
Q Consensus 352 vl~~~~ 357 (476)
+|++.+
T Consensus 468 Tl~~~~ 473 (842)
T 1n0u_A 468 TLTTSE 473 (842)
T ss_dssp EEESCT
T ss_pred eecCCC
Confidence 888754
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=1.1e-20 Score=169.04 Aligned_cols=156 Identities=28% Similarity=0.404 Sum_probs=110.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++++|||||+++|+.. ... .....+++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS--KVT-----------------------------EQEAGGITQHIGAYQVTVN 53 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT--CSS-----------------------------CSSCCSSSTTCCCCEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC--ccc-----------------------------cCCCCceeEeeeEEEEEeC
Confidence 345689999999999999999998521 110 1112334445555566778
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+..+.||||||+++|.......+..+|++++|+|++.+.. .++.+++..+...++| +++|+||+|+... .
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~--~ 123 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEA--N 123 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCS--C
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcC--C
Confidence 8899999999999998888888899999999999988753 4667777777667888 8899999999432 2
Q ss_pred HHHHHHHHHHHHHHHHhccCCc---CCCeeEEeeecccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~---~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+. +.+. +...+.-. ...++++++||++|.|+.++.+
T Consensus 124 ~~~---~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 124 PDR---VMQE----LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHH---HHHH----HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred HHH---HHHH----HHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 222 2221 22211100 0136899999999999998643
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.3e-19 Score=186.11 Aligned_cols=158 Identities=19% Similarity=0.275 Sum_probs=113.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.... .......|+|.+.....+++++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~------------------------------~~~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER------------------------------VIVSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT------------------------------EEEC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc------------------------------eeecCCCCceeeeeEEEEEECC
Confidence 3568999999999999999999963211 0122356788888888888999
Q ss_pred eEEEEEeCCCCc----------CcHHH-HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 123 TRFTILDAPGHK----------SYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~----------~f~~~-~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
..+.||||||+. .|... +..++..+|++++|+|++++.. .|..+++..+...+.| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 999999999983 34322 3457789999999999999864 4677777777788887 899999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+.. ..+..+++..+++...+...+ .++++++||++|.|+.++.+
T Consensus 295 K~Dl~~--~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAVD--KDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGSC--CCTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCCC--cchHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 999943 333345566666666555433 45899999999999998753
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.78 E-value=7.1e-19 Score=163.66 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=106.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE-e
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-~ 120 (476)
....++|+++|+.|+|||||+++|+..... + ......|.|.+.....+. .
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~~~~~ 76 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------A------FASKTPGRTQHINYFSVGPA 76 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------S------CTTCCCCSCCCEEEEEESCT
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------e------eecCCCCcccceEEEEecCC
Confidence 345689999999999999999999532100 0 011123455555444444 4
Q ss_pred CCeEEEEEeCCCCcC-------------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011837 121 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-------------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI 187 (476)
.+..+.||||||+.+ +....+.....+|++++|+|+.++.. ....+.+..+...++| +|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i 148 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IH 148 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EE
Confidence 568899999999632 33344455566899999999998652 3445566666667888 88
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhc---cCCcCCCeeEEeeecccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+||+|+.. .....+..+.+...+..+ +.. ...+++++||++|.|+.++
T Consensus 149 ~v~nK~Dl~~----~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 149 SLLTKCDKLT----RQESINALRATQKSLDAYRDAGYA--GKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp EEEECGGGSC----HHHHHHHHHHHHHHHHHHHHHTCC--SCEEEEEEBTTTTBSHHHH
T ss_pred EEEeccccCC----hhhHHHHHHHHHHHHHhhhhcccC--CCCeEEEeecCCCcCHHHH
Confidence 9999999943 233334444444444432 111 2568999999999999985
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=4.8e-19 Score=182.92 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=120.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+.... .......|+|.+.....++.+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~------------------------------~~~~~~~gtt~~~~~~~~~~~ 241 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER------------------------------VIVSNVAGTTRDAVDTSFTYN 241 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT------------------------------EEECC------CTTSEEEEET
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc------------------------------cccCCCCCeEEEEEEEEEEEC
Confidence 45678999999999999999999953211 011234577888877888889
Q ss_pred CeEEEEEeCCC----------CcCcHHH-HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 122 TTRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 122 ~~~~~liDtPG----------h~~f~~~-~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
+..++|||||| +++|... +..++..+|++|+|+|++++.. .|..+++..+...++| +|+|+
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999999 5666544 3457889999999999999864 5888888888888988 89999
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
||+|+. +..+..++++.+.+...+...+ .++++++||++|.|+.++.+
T Consensus 314 NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 314 NKWDAV--DKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp ECGGGS--CCCSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred EChhcC--CCchHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 999994 3344556677777777665543 35899999999999998653
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=1.9e-18 Score=169.16 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=108.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.-.|+++|++|+|||||+++|+...-.+ .....+.|.+.....+..+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------------------------~s~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------------------------ISPKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------------------------CCSSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------------------------cCCCCCceeeEEEEEEecC
Confidence 3456789999999999999999996322111 1123455555555666777
Q ss_pred -CeEEEEEeCCCCcCcH----------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHH-HHHHHHcCCceEEEE
Q 011837 122 -TTRFTILDAPGHKSYV----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLV 189 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~----------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~-l~~~~~l~i~~iIvv 189 (476)
+.+++|+||||+.++. ..+..++..+|++++|+|++++.. .+..+. +..+...++| +|+|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEE
Confidence 8999999999986543 566677889999999999998753 345555 5666667888 8899
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+||+|+.. + .+...+..+.+.. .++ ...+++++||++|.|+.++.
T Consensus 129 ~NK~Dl~~-~--~~~~~~~~~~l~~---~~~----~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 129 INKIDKIG-P--AKNVLPLIDEIHK---KHP----ELTEIVPISALKGANLDELV 173 (308)
T ss_dssp EECGGGSS-S--GGGGHHHHHHHHH---HCT----TCCCEEECBTTTTBSHHHHH
T ss_pred EECccCCC-C--HHHHHHHHHHHHH---hcc----CCCeEEEEeCCCCCCHHHHH
Confidence 99999941 1 2223333333333 322 13479999999999999853
No 38
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=2.4e-18 Score=151.09 Aligned_cols=144 Identities=20% Similarity=0.272 Sum_probs=99.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|+.|+|||||+++|+..... ......+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA------------------------------VVADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee------------------------------eccCCCCceecceEEEEEeCCceE
Confidence 68999999999999999999532110 011233456666666777788899
Q ss_pred EEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 126 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 126 ~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
.||||||+.+ +...+...+..+|++++|+|++.+.. ....+....+...++| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999987 44555667889999999999998642 2334455566667888 8899999999322
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+ +++..+. .+++ .+++++||++|.|+.++
T Consensus 124 ---~-------~~~~~~~-~~~~-----~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 124 ---E-------LYLGPLY-GLGF-----GDPIPTSSEHARGLEEL 152 (161)
T ss_dssp ---G-------GGCGGGG-GGSS-----CSCEECBTTTTBSHHHH
T ss_pred ---h-------HhHHHHH-hCCC-----CCeEEEecccCCChHHH
Confidence 1 2222222 3343 26899999999999985
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=2.8e-18 Score=153.42 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=100.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++|+|||||+++|+... .. .+....++.+.....+..+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 51 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQET--FG-----------------------------KQYKQTIGLDFFLRRITLP 51 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGG--TT-----------------------------HHHHHTTTSSEEEEEEEET
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCc--CC-----------------------------CCCCCceeEEEEEEEEEeC
Confidence 3456999999999999999999995321 00 0011112222233344454
Q ss_pred C---eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEcc
Q 011837 122 T---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKM 193 (476)
Q Consensus 122 ~---~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~ 193 (476)
+ ..+.||||||+++|...+...+..+|++++|+|++.... + ......+..+.. .+.|++++|+||+
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---F---ENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 4 789999999999998888888999999999999987532 1 122233333333 2667678999999
Q ss_pred CCCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+... ..+. ++...+.+..+ ++++++||++|.|+.++
T Consensus 126 Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 126 DLEHMRTIKP-------EKHLRFCQENG------FSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp GGGGGCSSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHH
T ss_pred ccccccccCH-------HHHHHHHHHcC------CcEEEEeCCCCCCHHHH
Confidence 99431 1112 22233334433 47999999999999985
No 40
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=3.9e-18 Score=155.44 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=102.6
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
........+|+++|+.++|||||+++|+... ... .+ ...|+......+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~-----------------------~~-------~~~t~~~~~~~~ 58 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQ--SSS-----------------------KH-------ITATVGYNVETF 58 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC-----------------------------C-------CCCCSSEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCC--Ccc-----------------------cc-------cccccceeEEEE
Confidence 3445667899999999999999999984211 000 00 011222333345
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----------CCceEE
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLL 187 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-----------~i~~iI 187 (476)
+..+..+.||||||+++|...+...+..+|++|+|+|++.... | ....+.+..+... ++| +|
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-ii 131 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FL 131 (199)
T ss_dssp EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EE
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EE
Confidence 6788999999999999999888888999999999999997531 1 1233333333322 777 89
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHH--HHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMT--PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+|+||+|+.... . .+++.+.+. .+.+. ..++++++||++|.|+.++.+
T Consensus 132 lv~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 132 FFANKMDAAGAK-T---AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EEEECTTSTTCC-C---HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred EEEECcCCCCCC-C---HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 999999995431 1 222222222 11122 256899999999999998643
No 41
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=3.2e-18 Score=166.86 Aligned_cols=149 Identities=18% Similarity=0.127 Sum_probs=101.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|+...-.+. . ...+.|.+.....+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv------------------------s------~~~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI------------------------S------PRPQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------C------SSSCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee------------------------c------CCCCceeEEEEEEEEeCC
Confidence 3457899999999999999999964322111 0 011233332233345678
Q ss_pred eEEEEEeCCCCcC--------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEc
Q 011837 123 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNK 192 (476)
Q Consensus 123 ~~~~liDtPGh~~--------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK 192 (476)
.+++|+||||+.+ |......++..+|++++|+|++++.. .+..+.+..+... ++| +|+|+||
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 9999999999877 56667778899999999999988742 3444444556655 788 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+... ... +.+.+..+ .+ ..+++|+||++|.|+.++
T Consensus 127 ~Dl~~~---~~~---~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 127 LDAAKY---PEE---AMKAYHEL---LP-----EAEPRMLSALDERQVAEL 163 (301)
T ss_dssp GGGCSS---HHH---HHHHHHHT---ST-----TSEEEECCTTCHHHHHHH
T ss_pred cccCCc---hHH---HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHH
Confidence 999432 110 22222222 22 247999999999999885
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.76 E-value=5.1e-18 Score=152.09 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=100.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.++|||||+++|+... . ..+....++.+.....+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 57 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQ--F-----------------------------VEFQESTIGAAFFSQTLAVN 57 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCC--C-----------------------------TTTSCCCSCCSEEEEEEEET
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCC--C-----------------------------CCcCCCCceeEEEEEEEEEC
Confidence 4556899999999999999999995311 0 01111222222222333333
Q ss_pred --CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011837 122 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 --~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~ 196 (476)
...+.||||||+.+|...+...++.+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+.
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLL 130 (181)
T ss_dssp TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4689999999999999888888899999999999987531 1 1233344444443 565 88999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... +.. .+++..+.+..+ ++++++||++|.|+.++
T Consensus 131 ~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 131 DAR--KVT----AEDAQTYAQENG------LFFMETSAKTATNVKEI 165 (181)
T ss_dssp TTC--CSC----HHHHHHHHHHTT------CEEEECCSSSCTTHHHH
T ss_pred ccc--cCC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHH
Confidence 321 111 123333444433 47999999999999985
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.76 E-value=7.8e-18 Score=150.30 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=100.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... .. .+....++.+.....+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNK--FD-----------------------------TQLFHTIGVEFLNKDLEVD 52 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSC--CC-----------------------------C----CCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------CCCCCceeeeEEEEEEEEC
Confidence 4567899999999999999999995321 10 1112223333334445555
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEEc
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 192 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-------l~i~~iIvviNK 192 (476)
+ ..+.||||||+.+|...+...+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTCSCTTTSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHccccccCCCc-EEEEEEC
Confidence 5 579999999999999888888999999999999987542 11 11222222221 4566 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+.......+ ++..+++.. ...+++++||++|.|+.++
T Consensus 126 ~Dl~~~~~~~~-------~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 126 IDISERQVSTE-------EAQAWCRDN-----GDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp TTCSSCSSCHH-------HHHHHHHHT-----TCCCEEECCTTTCTTHHHH
T ss_pred CcccccccCHH-------HHHHHHHhc-----CCceEEEEeCCCCCCHHHH
Confidence 99953322222 222333321 2457999999999999985
No 44
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=155.13 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=105.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++++|||||+++|+... ...+....++.+.....+..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDT-------------------------------YTESYISTIGVDFKIRTIELD 61 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC-------------------------------CCSCCCCCSSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCC-------------------------------CCCCCCCcccceEEEEEEEEC
Confidence 3567899999999999999999995311 111223445555555556666
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|...+...++.+|++++|+|+++... + ......+..+... ++| +++|+||+|+.
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 5 679999999999999888888999999999999987432 1 1223333333333 566 88999999995
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... .... +....+....+ ++++++||++|.|+.++..
T Consensus 135 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 135 TKK--VVDY----TTAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TTC--CSCH----HHHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 322 1111 12233344433 4799999999999998643
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=3.8e-18 Score=157.31 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++++|||||+++|+... . ..+....++.+.....+..++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK--F-----------------------------NPSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC--C-----------------------------CCSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CcccCCcccceEEEEEEEECC
Confidence 456899999999999999999985311 0 011122333344444555565
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 139 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMET 139 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTTTCSE-EEEEEECTTCSS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 679999999999998877788899999999999987532 1 1223333333332 566 899999999943
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.....+ ....+.+..+ ++++++||++|.|+.++..
T Consensus 140 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 140 RVVTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp CCSCHH-------HHHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 322222 2223333333 4699999999999998643
No 46
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=155.01 Aligned_cols=155 Identities=16% Similarity=0.195 Sum_probs=101.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|+.|+|||||+++|+...... .....|+......+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 65 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQS--------------------------------QNILPTIGFSIEKFKSS 65 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCC--------------------------------SSCCCCSSEEEEEEECS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------------------------CCcCCccceeEEEEEEC
Confidence 4556999999999999999999984221000 00112333334456667
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~Dl 195 (476)
+..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 138 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKMDL 138 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCcCc
Confidence 8999999999999999888888999999999999987531 1 123333333333 3676 8999999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.... . .+++. ..+....+. ...++++++||++|.|+.++.
T Consensus 139 ~~~~-~---~~~~~----~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 139 RDAV-T---SVKVS----QLLCLENIK-DKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp TTCC-C---HHHHH----HHHTGGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred ccCC-C---HHHHH----HHhChhhcc-CCceEEEEccCCCCcCHHHHH
Confidence 5321 1 22222 222211111 125689999999999999853
No 47
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=153.46 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=103.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... ...+...+++.+.....+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT-------------------------------FSGSYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCccCCCceeEEEEEEEEEC
Confidence 3467999999999999999999984210 011223445555555566666
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~ 197 (476)
+ ..+.||||||+++|...+...+..+|++++|+|++.+.. + ......+..+... ++| +|+|+||+|+..
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---F---VNVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 6 679999999999998888888899999999999987532 1 1222222223222 365 889999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.... .. .+...+....+ ++++++||++|.|+.++.
T Consensus 128 ~~~~--~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 128 RKVV--ET----EDAYKFAGQMG------IQLFETSAKENVNVEEMF 162 (181)
T ss_dssp GCCS--CH----HHHHHHHHHHT------CCEEECBTTTTBSHHHHH
T ss_pred hccc--CH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 2111 11 12233333333 479999999999999864
No 48
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4.9e-18 Score=153.54 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=97.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|+.|+|||||+++|+. +... ....|+......+..+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~ 58 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM--NEVV--------------------------------HTSPTIGSNVEEIVIN 58 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT--TSCE--------------------------------EEECCSCSSCEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------cCcCCCccceEEEEEC
Confidence 35679999999999999999999852 1100 0011222333455667
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
+..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+..
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 131 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVKE 131 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhchhhCCCe-EEEEEECCCCcC
Confidence 8999999999999998887788899999999999987631 1 123333333332 3566 899999999953
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. . .+++.+ .+....+. ...++++++||++|.|++++
T Consensus 132 ~~-~---~~~i~~----~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 132 CM-T---VAEISQ----FLKLTSIK-DHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp CC-C---HHHHHH----HHTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred CC-C---HHHHHH----HhChhhhc-CCCcEEEEccCCCCcCHHHH
Confidence 21 1 122222 22211111 12568999999999999985
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=7.6e-18 Score=150.81 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=94.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++++|||||+++|+...- . .......++.+.....+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~t~~~~~~~~~~~~~ 56 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAF--L----------------------------AGTFISTVGIDFRNKVLDVD 56 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--C----------------------------CCCCCCCCSCEEEEEEEEET
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCC--C----------------------------CCCcCCceeeEEEEEEEEEC
Confidence 35679999999999999999999853211 0 00111223333333334444
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---F---DNIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 4 478999999999999888888999999999999987532 1 122333333333 4566 89999999995
Q ss_pred CcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... ... ++...+.+..+ ++++++||++|.|+.++.
T Consensus 130 ~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 130 HERVVKR-------EDGEKLAKEYG------LPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp SCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHH
T ss_pred cccccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 321 111 12223333333 479999999999999853
No 50
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.76 E-value=5.2e-18 Score=152.85 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=103.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++++|||||+++|+...- .......++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-------------------------------KDDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-------------------------------CTTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCccceEEEEEEEEECC
Confidence 4579999999999999999999853211 111123344454445555555
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|...+...+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 578999999999999988889999999999999987532 11 22222222222 3566 899999999942
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.. +... .+...+.+.. .++++++||++|.|+.++..
T Consensus 130 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 130 DR--EVTF----LEASRFAQEN------ELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 11 1111 2223334443 35799999999999998643
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=5.1e-18 Score=150.25 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=97.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|++++|||||+++|+.. ... ......++.+.....+..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED--KFN-----------------------------PSFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC--CCC-----------------------------C-------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999531 111 01112233333334444444
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+....
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc
Confidence 578999999999998877788899999999999987532 1 1223333333332 566 89999999994332
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
...+ +...+.+..+ ++++++||++|.|+.++.
T Consensus 125 ~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 125 VTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp SCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHH
T ss_pred cCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 2222 2233334433 479999999999999863
No 52
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=2.2e-18 Score=165.91 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=104.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+... .......|+|++.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~-------------------------------~~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR-------------------------------QRVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC-------------------------------EEEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC-------------------------------cccCCCCCeeEEEEEEEEEeCCC
Confidence 35899999999999999999994211 01123457888888888888899
Q ss_pred EEEEEeCCCCcCcHH---------HH---hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEE
Q 011837 124 RFTILDAPGHKSYVP---------NM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~f~~---------~~---~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviN 191 (476)
.+.||||||+.+|.. .+ ......+|++++|+|++.. .........+..+++| +|+|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999988762 11 1123689999999999873 2445555667778998 899999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+|+....... ..+..+.+.+| ++++++||++|.|+.++
T Consensus 121 K~Dl~~~~~~~-------~~~~~l~~~lg------~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 121 MLDIAEKQNIR-------IEIDALSARLG------CPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp CHHHHHHTTEE-------ECHHHHHHHHT------SCEEECCCGGGHHHHHH
T ss_pred CccchhhhhHH-------HHHHHHHHhcC------CCEEEEEcCCCCCHHHH
Confidence 99983211000 11222223333 47999999999999985
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.75 E-value=5.4e-18 Score=151.42 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=100.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|+.++|||||+++|+...- .......++.+.....+..++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSF-------------------------------DNTYQATIGIDFLSKTMYLED 60 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCC-------------------------------CSSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999953110 111123344444444455555
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 133 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSSE-EEEEEECGGGGG
T ss_pred eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCcccc
Confidence 579999999999998888888899999999999987431 1 122333333322 3666 889999999843
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. +... ++...+.+.. .++++++||++|.|+.++
T Consensus 134 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 134 KR--QVST----EEGERKAKEL------NVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp GC--CSCH----HHHHHHHHHH------TCEEEEEBTTTTBSHHHH
T ss_pred cC--cCCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 21 1111 1222233333 347999999999999985
No 54
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.2e-18 Score=154.20 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=103.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|+.++|||||+++|+... ... ......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDH--FDH---------------------------NISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCC--CCT---------------------------TCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCC--CCC---------------------------CcCCCcceeEEEEEEEeCCEE
Confidence 457999999999999999999995321 000 011123444444444444456
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|...+...+..+|++++|+|++.... + ......+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~- 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI- 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG-
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc-
Confidence 789999999999999888888999999999999987532 1 1223334444443 566 8999999999421
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.. .+++..+++..+ ++++++||++|.|+.++
T Consensus 144 -~~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 144 -REVP----LKDAKEYAESIG------AIVVETSAKNAINIEEL 176 (192)
T ss_dssp -CCSC----HHHHHHHHHTTT------CEEEECBTTTTBSHHHH
T ss_pred -cccC----HHHHHHHHHHcC------CEEEEEeCCCCcCHHHH
Confidence 1111 123344444443 57999999999999985
No 55
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=6.3e-18 Score=149.92 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++++|||||+++|+. +... . ...|+......+.+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV--GEVV-------------------------T-------TIPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH--SSCC-------------------------C-------CCCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC-------------------------C-------cCCcCccceEEEEECC
Confidence 3468999999999999999999842 1110 0 0112223334566678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+.+|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---I---GISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 999999999999998888888899999999999987531 1 122233322222 3666 8999999999442
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. . .+++.+.+. ...+. ...++++++||++|.|+.++
T Consensus 124 ~-~---~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 124 M-T---SSEMANSLG----LPALK-DRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp C-C---HHHHHHHHT----GGGCT-TSCEEEEECCTTTCTTHHHH
T ss_pred C-C---HHHHHHHhC----chhcc-CCceEEEECcCCCCcCHHHH
Confidence 1 1 122222221 11111 13568999999999999985
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.75 E-value=6.9e-18 Score=149.26 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=100.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++++|||||+++|+. +.... ......|.+.......+...
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVK--GQFHE---------------------------FQESTIGAAFLTQTVCLDDT 53 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHH--SCCCT---------------------------TCCCCSSEEEEEEEEEETTE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc--CCCCC---------------------------CCCCccceEEEEEEEEECCE
Confidence 34578999999999999999999953 11110 01112333333333333334
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+.+|...+...+..+|++++|+|++.... + ....+.+..+... ++| +++|.||+|+...
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANK 126 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 5789999999999999888888999999999999987531 1 1233333334333 455 7889999998432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. +... ++...+.... .++++++||++|.|+.++
T Consensus 127 ~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 127 R--AVDF----QEAQSYADDN------SLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp C--CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred c--ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHH
Confidence 1 1111 2223333333 357999999999999985
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=9e-18 Score=153.20 Aligned_cols=102 Identities=19% Similarity=0.307 Sum_probs=72.0
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCCCCcCcc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~~~ 201 (476)
..+.||||||+++|...+...+..+|++++|+|++.+.. + ......+..+.. .+.| +++|+||+|+......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 789999999999999888888999999999999988642 1 122333333333 4555 9999999994222111
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. +++..+++.. .++++++||++|.|+.++.
T Consensus 166 ---~----~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 166 ---I----LEVQKYAQDN------NLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp ---H----HHHHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred ---H----HHHHHHHHHc------CCcEEEEecCCCCCHHHHH
Confidence 2 2334444443 3589999999999999863
No 58
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.75 E-value=1.6e-18 Score=165.04 Aligned_cols=144 Identities=20% Similarity=0.180 Sum_probs=101.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+... .......|+|++.....+..++..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-------------------------------~~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-------------------------------QRVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-------------------------------EEEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-------------------------------CCccCCCCceEEEEEEEEEECCeEE
Confidence 589999999999999999984210 0112345788888888888899999
Q ss_pred EEEeCCCCcCcHHH---------H-hhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 126 TILDAPGHKSYVPN---------M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 126 ~liDtPGh~~f~~~---------~-~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
.|+||||+.+|... + ...+ ..+|++|+|+|++.. .........+..+++| +|+|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887642 1 2223 689999999999873 2344445556667888 89999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+........ .+..+.+.+| ++++++||++|.|+.++
T Consensus 121 Dl~~~~~~~~-------~~~~l~~~lg------~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 121 DIAEHRGISI-------DTEKLESLLG------CSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp HHHHHTTCEE-------CHHHHHHHHC------SCEEECBGGGTBSHHHH
T ss_pred hcCCcCCcHH-------HHHHHHHHcC------CCEEEEECCCCCCHHHH
Confidence 9842211111 1122222333 47999999999999985
No 59
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.2e-17 Score=147.68 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=98.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|+.|+|||||+++|+... ... ......|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSND--FAE---------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCC---------------------------CCCCccceeEEEEEEEECCEEE
Confidence 46899999999999999999995321 100 0001122333222223322345
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~~ 200 (476)
.+.||||||+.+|...+...++.+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+...+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 79999999999999888888999999999999987532 1 122222323332 2566 889999999953211
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+. ..+....+.+..+ ++++++||++|.|+.++
T Consensus 126 ~~~v---~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 126 ERKV---AREEGEKLAEEKG------LLFFETSAKTGENVNDV 159 (170)
T ss_dssp CCCS---CHHHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred ccCC---CHHHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 0111 1112223333333 47999999999999985
No 60
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.6e-18 Score=155.47 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=102.6
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|++|+|||||+++|+.. ... ......++.+.....+..
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~ 70 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQG--LFP-----------------------------PGQGATIGVDFMIKTVEI 70 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHS--SCC-----------------------------TTCCCCCSEEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhC--CCC-----------------------------CCCCCccceeEEEEEEEE
Confidence 3456799999999999999999998531 111 111222334444445555
Q ss_pred CC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCC
Q 011837 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl 195 (476)
++ ..+.||||||+++|...+...++.+|++++|+|++.... |+ ...+.+..+.. .++| +++|+||+|+
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 143 (201)
T 2ew1_A 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVI-TVLVGNKIDL 143 (201)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 55 578999999999999888888999999999999987532 11 22333333333 2565 8899999999
Q ss_pred CCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... .... ++...+.+..+ ++++++||++|.|+.++..
T Consensus 144 ~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 144 AERREVSQ-------QRAEEFSEAQD------MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GGGCSSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 421 1111 12223333333 4799999999999998643
No 61
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=152.63 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=101.0
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...+..++|+++|+.|+|||||+++|+. +... .+....++.+.....+.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~ 72 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKT--GAFS-----------------------------ERQGSTIGVDFTMKTLE 72 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHH--SCC---------------------------------------CEEEEEEE
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhh--CCCC-----------------------------CCCCCCcceEEEEEEEE
Confidence 3345679999999999999999999853 1111 01111222333344455
Q ss_pred eCC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccC
Q 011837 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMD 194 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~D 194 (476)
.++ ..+.||||||+++|...+...++.+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|
T Consensus 73 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~D 145 (201)
T 2hup_A 73 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---F---LSVPHWIEDVRKYAGSNIV-QLLIGNKSD 145 (201)
T ss_dssp ETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTT
T ss_pred ECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCc
Confidence 555 589999999999999888888999999999999987431 1 123333333333 3466 889999999
Q ss_pred CCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... ..+ .+++..+.+..++. +++++||++|.|+.++.
T Consensus 146 l~~~~~v~-------~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 146 LSELREVS-------LAEAQSLAEHYDIL-----CAIETSAKDSSNVEEAF 184 (201)
T ss_dssp CGGGCCSC-------HHHHHHHHHHTTCS-----EEEECBTTTTBSHHHHH
T ss_pred cccccccC-------HHHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHH
Confidence 9431 111 12333444544431 79999999999999863
No 62
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.75 E-value=6.2e-18 Score=152.11 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=99.3
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
.......+.++|+++|+.|+|||||+++|+.. ... ....|+.....
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~--------------------------------~~~~t~~~~~~ 58 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMN--EVV--------------------------------HTSPTIGSNVE 58 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTT--SCE--------------------------------EEECCSSSSCE
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcC--CCC--------------------------------ccCCcCceeeE
Confidence 33444556799999999999999999999521 100 00111122233
Q ss_pred EEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEc
Q 011837 117 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNK 192 (476)
Q Consensus 117 ~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK 192 (476)
.+..++..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||
T Consensus 59 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK 131 (181)
T 2h17_A 59 EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANK 131 (181)
T ss_dssp EEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEEC
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEEC
Confidence 455678999999999999998888888899999999999987531 1 123333333332 4566 8999999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+.... .. ++ +...+....+. ...++++++||++|.|+.++
T Consensus 132 ~Dl~~~~-~~---~~----i~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 132 QDVKECM-TV---AE----ISQFLKLTSIK-DHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp TTSTTCC-CH---HH----HHHHTTGGGCC-SSCEEEEECBTTTTBTHHHH
T ss_pred CCcccCC-CH---HH----HHHHhCccccc-CCceEEEEccCCCCcCHHHH
Confidence 9994321 11 12 22222111111 13568999999999999984
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=153.29 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=101.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.|+|||||+++|+...- .......++.+.....+..+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 71 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTF-------------------------------CEACKSTVGVDFKIKTVELR 71 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEET
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCCCCccceeEEEEEEEEC
Confidence 45578999999999999999999842110 01111223334444445555
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|...+...++.+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---F---DDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4 578999999999999888888999999999999987542 1 1223333344433 566 89999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... +... ++...+.+.+ ...+++++||++|.|+.++.
T Consensus 145 ~~~--~v~~----~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 145 TDR--EITR----QQGEKFAQQI-----TGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp GGC--CSCH----HHHHHHHHTS-----TTCEEEECBTTTTBSHHHHH
T ss_pred ccc--ccCH----HHHHHHHHhc-----CCCeEEEEeCCCCCCHHHHH
Confidence 321 1011 1223333332 14589999999999999853
No 64
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=3.4e-18 Score=152.71 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=100.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.++|||||+++|+...- .. ......+.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~ 62 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF--MA---------------------------DCPHTIGVEFGTRIIEVSGQ 62 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCC--CS---------------------------SCTTSCCCCEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCCccceEEEEEEEEECCe
Confidence 34579999999999999999999953211 00 00011222332222223223
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+++|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 4678999999999999888888999999999999987542 1 122222333333 4566 8999999999421
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+... +++..+++..+ ++++++||++|.|+.++
T Consensus 136 --~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 136 --RDVTY----EEAKQFAEENG------LLFLEASAKTGENVEDA 168 (179)
T ss_dssp --CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHH
T ss_pred --cccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHH
Confidence 11111 23334444443 47999999999999985
No 65
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.75 E-value=4.6e-18 Score=154.44 Aligned_cols=160 Identities=17% Similarity=0.131 Sum_probs=99.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE----
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA---- 116 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~---- 116 (476)
..+..++|+++|++|+|||||++.|.. ..... +.............|+.....
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~---~~~~~--------------------~~~~~~~~~~~~~~t~~~~~~~~~~ 66 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS---KVPEG--------------------RKGEMVSLATEDERTLFFDFLPLDI 66 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH---TSCGG--------------------GBCCCEEEECSSCEEEEEEECCSSC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh---hcccc--------------------ccccccccccccccceeeeeccccc
Confidence 345679999999999999999965521 11100 000000000001122222211
Q ss_pred -EEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH----HHH-----cCCceE
Q 011837 117 -HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKT-----LGVTKL 186 (476)
Q Consensus 117 -~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~----~~~-----l~i~~i 186 (476)
.+......+.||||||+++|.......++.+|++|+|+|++.+.. .+..+.+.. +.. .++| +
T Consensus 67 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-i 138 (198)
T 3t1o_A 67 GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-I 138 (198)
T ss_dssp CCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-E
T ss_pred ccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-E
Confidence 222334679999999999999988889999999999999986543 122222222 222 3677 8
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
++|+||+|+... .. .+++..+++..++ .+++++||++|.|+.++.
T Consensus 139 ilv~NK~Dl~~~-~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 139 VIQVNKRDLPDA-LP-------VEMVRAVVDPEGK-----FPVLEAVATEGKGVFETL 183 (198)
T ss_dssp EEEEECTTSTTC-CC-------HHHHHHHHCTTCC-----SCEEECBGGGTBTHHHHH
T ss_pred EEEEEchhcccc-cC-------HHHHHHHHHhcCC-----ceEEEEecCCCcCHHHHH
Confidence 899999999542 12 2334445555443 279999999999999864
No 66
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.75 E-value=7.9e-18 Score=152.45 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=102.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|++|+|||||+++|+... ... ......|.+.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDS--FTP---------------------------AFVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSC--CCC---------------------------SCCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCC--CCC---------------------------CcCCceeEEEEEEEEEECCe
Confidence 3457999999999999999999985311 000 00112233433333333334
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 5689999999999998888888999999999999987532 1 1333444444443 566 8999999999432
Q ss_pred C-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ... +++..+.+..+ ++++++||++|.|+.++.
T Consensus 143 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 143 RVVPA-------EDGRRLADDLG------FEFFEASAKENINVKQVF 176 (189)
T ss_dssp CCSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHHH
T ss_pred cCCCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 1 111 22333444443 479999999999999864
No 67
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=4.1e-18 Score=153.20 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=79.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+... . ..+....++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA--F-----------------------------NSTFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCcccceeEEEEEEECC
Confidence 457899999999999999999985211 0 011122344444444555555
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|.......+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---F---DNIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998877778899999999999987431 1 1233333344432 566 899999999953
Q ss_pred cC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.. .+. +++..+.+..+ ++++++||++|.|+.++..
T Consensus 128 ~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KRQVSK-------ERGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CCCSCH-------HHHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cCcCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 122 22233344433 4799999999999998643
No 68
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=154.35 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=102.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|++|+|||||+++|+...-.. . .....|.+.......+.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~ 70 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH--------------------------D---SRTTIGVEFSTRTVMLG 70 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCS--------------------------S---CCCCSSEEEEEEEEEET
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------------------C---CCCccceeEEEEEEEEC
Confidence 344567999999999999999999995321100 0 00112333333333333
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~ 196 (476)
.....+.||||||+.+|...+...+..+|++|+|+|++.... + ......+..+... ++| +++|+||+|+.
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCcc
Confidence 345779999999999998888888999999999999987532 1 1223333333332 566 88999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... +... ++...+.+.. +++++++||++|.|+.++.
T Consensus 144 ~~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 144 QAR--EVPT----EEARMFAENN------GLLFLETSALDSTNVELAF 179 (193)
T ss_dssp GGC--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 321 1111 2233344443 3579999999999999863
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.74 E-value=4.7e-18 Score=153.30 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+... ... . ..+.+.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------~------~~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNH--FVD------------------------E------YDPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSS--CCC------------------------C------CCTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------C------CCCCchheEEEEEEECC
Confidence 356899999999999999999995321 100 0 01111122222333444
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~ 196 (476)
..+.||||||+++|.......+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 457889999999998888888899999999999987431 11 12222222222 3577 89999999996
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
......+.. ..+.+..+ ++++++||++|.|+.++..
T Consensus 123 ~~~~~~~~~-------~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 123 SRTVDTKQA-------QDLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp SCSSCHHHH-------HHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHHH-------HHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 443333222 22333333 4799999999999998643
No 70
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=1.2e-17 Score=152.38 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=96.8
Q ss_pred ccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE
Q 011837 37 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 116 (476)
Q Consensus 37 ~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~ 116 (476)
......++.++|+++|..++|||||+++|.. .... ....+........
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~-----------------------------~~~~~~~~~~~~~ 59 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSP-----------------------------NETLFLESTNKIY 59 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHS---CCCG-----------------------------GGGGGCCCCCSCE
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHh---cCCC-----------------------------cceeeecccccee
Confidence 3444556779999999999999999997632 1110 0111122222222
Q ss_pred EEE---eCCeEEEEEeCCCCcCcHHHH---hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH--HcCCceEEE
Q 011837 117 HFE---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLL 188 (476)
Q Consensus 117 ~~~---~~~~~~~liDtPGh~~f~~~~---~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~--~l~i~~iIv 188 (476)
.+. .....+.||||||+++|...+ ...++.+|++|+|+|+++..++ .+ ....+.+..+. ..++| +++
T Consensus 60 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~---~~~~~~l~~~~~~~~~~p-iil 134 (196)
T 3llu_A 60 KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-AL---TRLHITVSKAYKVNPDMN-FEV 134 (196)
T ss_dssp EEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-HH---HHHHHHHHHHHHHCTTCE-EEE
T ss_pred eeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-HH---HHHHHHHHHHHhcCCCCc-EEE
Confidence 222 244789999999999998776 6778899999999999986321 11 11122222221 12666 899
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|.||+|+...+...+....+.......+...... ...++++++||++ .|+.++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEA 187 (196)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHH
T ss_pred EEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHH
Confidence 9999998432111112223333333333332211 1257899999999 999985
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=1.9e-17 Score=149.85 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=100.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee-eEEEEe
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~-~~~~~~ 120 (476)
....++|+++|++|+|||||+++|+.. ... .+....+..+.. ...+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 56 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG--KFN-----------------------------SKFITTVGIDFREKRVVYR 56 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS--CCC-----------------------------CSCCCCCSEEEEEEEEEEC
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------cCcccccceeeeeEEEEEe
Confidence 345799999999999999999998531 110 000111222222 222333
Q ss_pred C-----------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCce
Q 011837 121 E-----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 185 (476)
Q Consensus 121 ~-----------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~ 185 (476)
. ...+.|+||||+++|.......+..+|++|+|+|++.... + ...++.+..+.. .++|
T Consensus 57 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p- 129 (195)
T 3bc1_A 57 ANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS---F---LNVRNWISQLQMHAYSENPD- 129 (195)
T ss_dssp TTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSSSSSCC-
T ss_pred cCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-
Confidence 3 3589999999999999998899999999999999987542 1 122333433333 3676
Q ss_pred EEEEEEccCCCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 186 LLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 iIvviNK~Dl~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+++|+||+|+... .... +++..+....+ ++++++||++|.|+.++.+
T Consensus 130 iilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 130 IVLCGNKSDLEDQRAVKE-------EEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcccccccccCH-------HHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 8999999999432 1111 22333344433 4799999999999998643
No 72
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=150.74 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=95.7
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++++|||||+++|+.. ..... .....|.+.......+..
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~t~~~~~~~~~~~~~~ 74 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN--EFREN---------------------------ISATLGVDFQMKTLIVDG 74 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC--CCC-------------------------------------CEEEEEEETT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC--CCCcc---------------------------CCCCccceeEEEEEEECC
Confidence 3456799999999999999999999532 11100 001112222222222222
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
....+.||||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+||+|+..
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---F---LNIREWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 34679999999999999988888999999999999987542 1 122333333333 3677 899999999831
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
....+....-..+....+.+..+ ++++++||++|.|+.++
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~SA~~g~gv~el 187 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG------ALFCETSAKDGSNIVEA 187 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC------CeEEEeeCCCCCCHHHH
Confidence 10000000000122233344433 47999999999999985
No 73
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.74 E-value=9.1e-18 Score=152.38 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=100.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|+.++|||||+++|+... ... .....++.+.....+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~ 64 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP-----------------------------VHDLTIGVEFGARMVN 64 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSC--CCC----------------------------------CCSSEEEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCcccceeEEEEEE
Confidence 344567999999999999999999995321 110 0011112222223334
Q ss_pred eCC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccC
Q 011837 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMD 194 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~D 194 (476)
.++ ..+.||||||+++|...+...++.+|++++|+|++.... + ......+..+... ++| +++|+||+|
T Consensus 65 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~D 137 (191)
T 2a5j_A 65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSD 137 (191)
T ss_dssp ETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTT
T ss_pred ECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcc
Confidence 444 578999999999998877788899999999999987432 1 1233344444432 566 889999999
Q ss_pred CCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... .... ++...+.+..+ ++++++||++|.|+.++.
T Consensus 138 l~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 138 LESRRDVKR-------EEGEAFAREHG------LIFMETSAKTACNVEEAF 175 (191)
T ss_dssp CGGGCCSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHH
T ss_pred cCCccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 9431 1111 22233344433 479999999999999864
No 74
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.5e-17 Score=150.70 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=101.8
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+.. .... ....|+......+..
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~ 64 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASG--QFNE-------------------------------DMIPTVGFNMRKITK 64 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHS--CCCC-------------------------------SCCCCCSEEEEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcC--CCCC-------------------------------ccCCCCceeEEEEEe
Confidence 3466799999999999999999999531 1100 011122233334667
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~ 196 (476)
.+..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---I---EASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 78999999999999998888888899999999999986421 1 122333333322 4677 89999999995
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... .. +++.+.+ ...... ...++++++||++|.|+.++
T Consensus 138 ~~~-~~---~~~~~~~----~~~~~~-~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 138 GAL-DE---KELIEKM----NLSAIQ-DREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp TCC-CH---HHHHHHT----TGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred cCC-CH---HHHHHHh----Chhhhc-cCCeeEEEEECCCCCCHHHH
Confidence 321 11 1222221 111111 13568999999999999985
No 75
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=6.3e-18 Score=161.24 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=103.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|.... .......|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~-------------------------------~~~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTK-------------------------------QYVANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTC-------------------------------EEEEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCC-------------------------------CcccCCCCceEEEEEEEEEECC
Confidence 456899999999999999999984210 0112235788888888888888
Q ss_pred eEEEEEeCCCCcCcHHH-----H-hhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVPN-----M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~-----~-~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.||||||+.+|... + ...+ ..+|++++|+|++... .....+..+..+++| +++|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999999887531 1 1122 5899999999998742 233344555667898 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..... +......+.+.+| ++++++||++|.|+.++.
T Consensus 122 l~~~~~-------i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 122 EAKKTG-------MKIDRYELQKHLG------IPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp HHHHTT-------CCBCHHHHHHHHC------SCEEECCTTTCTTHHHHH
T ss_pred CCCccc-------hHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHH
Confidence 832110 0012233333443 479999999999999854
No 76
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.74 E-value=1.7e-17 Score=150.74 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=99.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|.. +... ....|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN--DRLA--------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH--SCCC--------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------ccccCCCCCeEEEEECC
Confidence 4557999999999999999999853 1110 01122233345566778
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++||||+++|...+...++.+|++++|+|++.... | ....+.+..+.. .++| +++|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---F---DEARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---H---HHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999998877778899999999999987531 1 122222322222 3566 8999999999542
Q ss_pred CccHHHHHHHHHHHHHHHHhcc------CCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASG------YNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+. +++.+.+.... +.....++++++||++|.|+.++
T Consensus 140 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 140 -VSE-------AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp -CCH-------HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred -CCH-------HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 122 22333332211 01113578999999999999985
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=3.7e-18 Score=166.61 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|+...-.+ ..+ ..+.|.+.....+.+++
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------------------~s~------~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI------------------------TSR------KAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE------------------------CCC------CSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc------------------------cCC------CCCcceeeEEEEEEECC
Confidence 345689999999999999999996421100 001 11222222233456678
Q ss_pred eEEEEEeCCCCc-C--------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 123 TRFTILDAPGHK-S--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~-~--------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
.+++|+||||+. + |......++..+|++++|+|+.. .. .++++.+..+...+.| +|+++||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~-------~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT-------PDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC-------HHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-------HHHHHHHHHHHhcCCC-EEEEEECc
Confidence 899999999997 3 33334566789999999999976 32 4666666666666888 78899999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+.. ....+ .+.+..+.+.+++ .+++|+||++|.|+.++.
T Consensus 127 D~~~---~~~~~---~~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 127 DNVQ---EKADL---LPHLQFLASQMNF-----LDIVPISAETGLNVDTIA 166 (301)
T ss_dssp TTCC---CHHHH---HHHHHHHHTTSCC-----SEEEECCTTTTTTHHHHH
T ss_pred ccCc---cHHHH---HHHHHHHHHhcCc-----CceEEEECCCCCCHHHHH
Confidence 9943 12223 2333344334443 268999999999998853
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=3.1e-17 Score=144.51 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+... . .+. ..|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~--~-------------------------~~~-------~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGE--I-------------------------VTT-------IPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC--S-------------------------SCC-------CCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--c-------------------------Ccc-------cCcCceeEEEEEECCEEE
Confidence 479999999999999999995321 0 000 012223334456678899
Q ss_pred EEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCcc
Q 011837 126 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 126 ~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~~ 201 (476)
.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+.... .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---NEAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-N 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-C
Confidence 999999999998888888999999999999987531 1 122222322222 2566 89999999994321 1
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+++.+. +...... ...++++++||++|.|+.++
T Consensus 119 ---~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 119 ---AAEITDK----LGLHSLR-HRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ---HHHHHHH----TTGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred ---HHHHHHH----hCccccc-CccEEEEEcccCCCcCHHHH
Confidence 1222222 1111111 12568999999999999985
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=1e-17 Score=151.10 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+... .. . ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD-------------------------T-------ISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS-------------------------S-------CCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------c-------ccccCccceEEEEECC
Confidence 567999999999999999999985211 00 0 0112222234455678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888899999999999987531 1 122233333322 3566 8999999999542
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. . .+++.+ .+...... ...++++++||++|.|+.++.
T Consensus 135 ~-~---~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 135 L-S---CNAIQE----ALELDSIR-SHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp C-C---HHHHHH----HTTGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHH----HhChhhcc-CCceEEEEeeCCCCCCHHHHH
Confidence 1 1 122222 22111111 235689999999999999853
No 80
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=4.9e-18 Score=163.32 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=103.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+... .......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~-------------------------------~~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR-------------------------------QHVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC-------------------------------EEEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC-------------------------------cccCCCCCeEEEeeEEEEEECCc
Confidence 46899999999999999999984210 01123467788888888888999
Q ss_pred EEEEEeCCCCcCcHHH------Hhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-CceEEEEEEccC
Q 011837 124 RFTILDAPGHKSYVPN------MISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~------~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~-i~~iIvviNK~D 194 (476)
.+.||||||+.+|... .... ...+|++++|+|++.+. +....+..+..++ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---------RNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---------hhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 9999999999887542 1122 25799999999998752 4445555666677 87 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+.... . .......+.+.+| ++++|+||++|.|+.++.
T Consensus 121 l~~~~----~---~~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 121 LLKKK----G---AKIDIKKMRKELG------VPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp HHHHH----T---CCCCHHHHHHHHS------SCEEECBGGGTBTHHHHH
T ss_pred cCccc----c---cHHHHHHHHHHcC------CcEEEEEeCCCCCHHHHH
Confidence 73210 0 0011222223333 479999999999998853
No 81
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.73 E-value=5.1e-18 Score=149.53 Aligned_cols=149 Identities=20% Similarity=0.173 Sum_probs=95.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
+.++|+++|++|+|||||+++|+. +.... .. .. .+.+.....+..++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~------------------------~~-----~~-~~~~~~~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT--GTFIE------------------------KY-----DP-TIEDFYRKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH--SCCCS------------------------CC-----CT-TCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc--CCCcc------------------------cC-----CC-CcceeEEEEEEECCE
Confidence 458999999999999999999853 11110 00 00 00011122233343
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
..+.|+||||+++|.......+..+|++++|+|+..... + ....+.+..+.. .++| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 558999999999999888888899999999999987431 1 112222222222 3677 899999999843
Q ss_pred c-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. .... ++...+.+..+ ++++++||++|.|+.++.
T Consensus 123 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 123 EREVSS-------SEGRALAEEWG------CPFMETSAKSKTMVDELF 157 (167)
T ss_dssp GCCSCH-------HHHHHHHHHHT------SCEEEECTTCHHHHHHHH
T ss_pred cccCCH-------HHHHHHHHHhC------CCEEEecCCCCcCHHHHH
Confidence 2 1111 12233334433 479999999999999853
No 82
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.9e-17 Score=151.97 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=99.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|++|+|||||+++|+...- . ......++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKF--S-----------------------------NQYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------SSCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCcccceEEEEEEEEC
Confidence 45679999999999999999999953210 0 0111223334333444444
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-H------cCCceEEEEEEc
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T------LGVTKLLLVVNK 192 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~------l~i~~iIvviNK 192 (476)
+ ..+.||||||+.+|...+...++.+|++|+|+|++.+.. +. .....+..+. . .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---FK---TLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 3 679999999999998887788899999999999987532 11 1222222222 1 3667 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+|+.......+ ++..+.... ..++++++||++|.|+.++.+
T Consensus 127 ~Dl~~~~~~~~-------~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 127 IDLENRQVATK-------RAQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TTSSCCCSCHH-------HHHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCCcccccCHH-------HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 99953322222 222233211 245799999999999998643
No 83
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.3e-17 Score=151.23 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=101.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++++|||||+++|+... ... ......|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~ 62 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDT--FDP---------------------------ELAATIGVDFKVKTISVDGN 62 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCCSEEEEEEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCC--CCc---------------------------cCCCccceEEEEEEEEECCe
Confidence 4567999999999999999999995321 100 00111233333333333334
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
...+.||||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIV-NMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcc
Confidence 5779999999999998888888899999999999987532 1 122233333333 2455 889999999944
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..... ++...+.+.. .++++++||++|.|+.++.
T Consensus 136 ~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 136 REVDR-------NEGLKFARKH------SMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp CCSCH-------HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred cccCH-------HHHHHHHHHc------CCEEEEecCCCCCCHHHHH
Confidence 32222 2223334443 3479999999999999863
No 84
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=1.2e-17 Score=154.31 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=93.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++|+|||||+++|+... .. +....++ .....+..+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~--~~------------------------------~~~~~~~--~~~~~~~~~ 49 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQ--YR------------------------------DTQTSIT--DSSAIYKVN 49 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSC--CC------------------------------CBCCCCS--CEEEEEECS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC--cc------------------------------cccCCcc--eeeEEEEec
Confidence 3456899999999999999999995321 10 0001111 122224454
Q ss_pred ---CeEEEEEeCCCCcCcHH-HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH---------HcCCceEEE
Q 011837 122 ---TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---------TLGVTKLLL 188 (476)
Q Consensus 122 ---~~~~~liDtPGh~~f~~-~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~---------~l~i~~iIv 188 (476)
+..+.|||||||.+|.. .+...++.+|++|+|+|++... .+..+....+. ..++| +++
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p-iil 120 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ--------REVKDVAEFLYQVLIDSMALKNSPS-LLI 120 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH--------HHHHHHHHHHHHHHHHHHTSTTCCE-EEE
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC--------HHHHHHHHHHHHHHhhhhhcccCCC-EEE
Confidence 57899999999999987 4455678999999999997621 12222222111 12566 899
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHh---------------------cc-----CCc---CCCeeEEeeecccc--
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV---KKDVQFLPISGLMG-- 237 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~---------------------~~-----~~~---~~~~~~ipvSa~~g-- 237 (476)
|+||+|+..... .+++.+.+...+.. .+ |.. ...++++++||++|
T Consensus 121 v~nK~Dl~~~~~----~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 121 ACNKQDIAMAKS----AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEECTTSTTCCC----HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred EEECCCCCCccc----HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 999999954432 23333444433331 00 000 01678999999999
Q ss_pred ----cccccc
Q 011837 238 ----LNMKTR 243 (476)
Q Consensus 238 ----~~i~~~ 243 (476)
.|++++
T Consensus 197 ~~~~~gv~~l 206 (214)
T 2fh5_B 197 DTGSADIQDL 206 (214)
T ss_dssp ---CCBCHHH
T ss_pred cccccChHHH
Confidence 999885
No 85
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=2e-17 Score=146.45 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=100.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++++|||||+++|+... ... ......|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDS--FDP---------------------------NINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSC--CCT---------------------------TCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CCC---------------------------CCCCceeEEEEEEEEEECCeE
Confidence 456899999999999999999995321 000 001123344433333333344
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|...+...+..+|++++|+|++.... + ......+..+... ++| +++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F---STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 789999999999998888888899999999999987532 1 1223333444443 354 88899999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+. ..++...+.+.. ..+++++||++|.|+.++
T Consensus 128 --~v----~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 128 --EV----MERDAKDYADSI------HAIFVETSAKNAININEL 159 (170)
T ss_dssp --CS----CHHHHHHHHHHT------TCEEEECBTTTTBSHHHH
T ss_pred --cc----CHHHHHHHHHHc------CCEEEEEeCCCCcCHHHH
Confidence 10 012233333333 357999999999999985
No 86
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=1.7e-17 Score=146.28 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=93.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+... ... +.. ...+.+. ...+..++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~------------------------~~~---~t~~~~~---~~~~~~~~ 49 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------DYE---PTKADSY---RKKVVLDG 49 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCS------------------------CCC---TTCCEEE---EEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc--cCC------------------------CCC---CCcceEE---EEEEEECC
Confidence 356899999999999999999995321 100 000 0011111 12233333
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~ 196 (476)
..+.||||||+.+|...+...+..+|++++|+|++.... ++ ...+.+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 578999999999999888888999999999999986431 11 12222222222 2677 89999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... +... ++...+++..+ ++++++||++|.|+.++
T Consensus 123 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 123 DKR--QVSV----EEAKNRADQWN------VNYVETSAKTRANVDKV 157 (168)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEECCTTTCTTHHHH
T ss_pred ccC--ccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHH
Confidence 321 1111 22333344433 47999999999999985
No 87
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=8.9e-18 Score=148.80 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=91.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+... .. .+....++.+.....+..++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 52 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENK--FN-----------------------------DKHITTLGASFLTKKLNIGG 52 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCC--CC-----------------------------SSCCCCCSCEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC--CC-----------------------------cCCCCccceEEEEEEEEECC
Confidence 456899999999999999999995321 10 00111122222223333333
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|.......+..+|++++|+|+++... + ......+..+.. .++| +++|+||+|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 578899999999998888888899999999999987531 1 122222223322 4566 889999999943
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. +... ++...+.+..+ ++++++||++|.|+.++
T Consensus 126 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 126 ER--HVSI----QEAESYAESVG------AKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp GC--CSCH----HHHHHHHHHTT------CEEEEEBTTTTBSHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEecCCCCCCHHHH
Confidence 21 1111 22333444443 47999999999999985
No 88
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=6.2e-18 Score=153.50 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=104.9
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
.+....++|+++|+.++|||||+++|+...-.. ......|.+.......+.
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 68 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRH 68 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEET
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEEC
Confidence 334567999999999999999999996321000 000112333333334444
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~ 196 (476)
.....+.||||||+++|.......+..+|++++|+|+++... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 141 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWATQIKTYSWDNAQ-VILVGNKCDME 141 (191)
T ss_dssp TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 466889999999999999988889999999999999986432 1 123333444444 3566 88999999984
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... .... ++...+.+..+ ++++++||++|.|+.++.+
T Consensus 142 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 142 EER--VVPT----EKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 321 1111 22233334433 4799999999999998643
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=5.4e-17 Score=142.62 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=95.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--C
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~--~ 122 (476)
..+|+++|+.|+|||||+++|+... ... .. ...+.+.....+..+ .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~------------------------~~------~~~~~~~~~~~~~~~~~~ 50 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------EC------DPTIEDSYRKQVVIDGET 50 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCS------------------------CC------CTTCCEEEEEEEEETTEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCc--Ccc------------------------cc------CCccceEEEEEEEECCEE
Confidence 5799999999999999999995321 110 00 000001111222333 3
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l----~i~~iIvviNK~Dl~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR 123 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc
Confidence 568899999999998888888899999999999986431 1 1223333333332 677 8899999999543
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
....+ .+..+.+..+ ++++++||++|.|+.++
T Consensus 124 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 124 TVESR-------QAQDLARSYG------IPYIETSAKTRQGVEDA 155 (166)
T ss_dssp CSCHH-------HHHHHHHHHT------CCEEEECTTTCTTHHHH
T ss_pred ccCHH-------HHHHHHHHcC------CeEEEecCCCCCCHHHH
Confidence 22222 2333333433 47999999999999985
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=1.5e-17 Score=147.41 Aligned_cols=146 Identities=23% Similarity=0.286 Sum_probs=94.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|....- ......++|++.....+..++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS-------------------------------SCC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe-------------------------------eccCCCCcceeeeEEEEEECCc
Confidence 357999999999999999999842100 0011234555555555667788
Q ss_pred EEEEEeCCCCcCcHH-----HH-hhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSYVP-----NM-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f~~-----~~-~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+|||||+.+|.. .+ ...+ ..+|++++|+|++... +..+.+..+...++| +|+|.||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---------~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---------RNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---------HHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---------HhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 999999999988741 11 2222 3799999999997621 233344445556888 8899999998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.... ... .+...+.+.++ .+++++||++|.|+.++
T Consensus 121 ~~~~----~~~---~~~~~~~~~~~------~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 121 AKSL----GIE---IDVDKLEKILG------VKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HHHT----TCC---CCHHHHHHHHT------SCEEECBGGGTBSHHHH
T ss_pred cccc----Chh---hHHHHHHHHhC------CCEEEEEcCCCCCHHHH
Confidence 3210 000 01222333333 46999999999999985
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.73 E-value=2e-17 Score=150.43 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..++.++|+++|++|+|||||+++|+. +... . ...|+......+..
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~----------------------------~----~~~t~~~~~~~~~~ 70 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL--GEIV----------------------------T----TIPTIGFNVETVEY 70 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS--SCCE----------------------------E----EEEETTEEEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh--CCcc----------------------------c----cCCcCceeEEEEEE
Confidence 446679999999999999999999842 1100 0 01122233345666
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~ 196 (476)
.+..+.||||||+++|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~ 143 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---V---QESADELQKMLQEDELRDAV-LLVFANKQDMP 143 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHhcccccCCCe-EEEEEECCCCC
Confidence 88999999999999998888788899999999999987531 1 122233332222 2566 89999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... . .+++.+. +...... ...++++++||++|.|+.++
T Consensus 144 ~~~-~---~~~i~~~----~~~~~~~-~~~~~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 144 NAM-P---VSELTDK----LGLQHLR-SRTWYVQATCATQGTGLYDG 181 (192)
T ss_dssp TCC-C---HHHHHHH----TTGGGCS-SCCEEEEECBTTTTBTHHHH
T ss_pred CCC-C---HHHHHHH----hCccccc-CCceEEEECcCCCcCCHHHH
Confidence 321 1 1222222 2111111 13568999999999999985
No 92
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=1.3e-17 Score=147.37 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
...++|+++|++|+|||||+++|+. +.... .....++.+.....+..+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 51 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK--GIFTK-----------------------------DYKKTIGVDFLERQIQVND 51 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH--CCCCC-----------------------------CSSCCCSSSEEEEEEEETT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCceEEEEEEEEEEECC
Confidence 3468999999999999999999853 11110 001111122222333333
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCc
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~ 198 (476)
...+.||||||+.+|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 3579999999999998777778889999999999987531 1 122223332322 3677 8899999998432
Q ss_pred C-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ... +++..+.+..+ ++++++||++|.|+.++
T Consensus 125 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 125 SCIKN-------EEAEGLAKRLK------LRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp CSSCH-------HHHHHHHHHHT------CEEEECBTTTTBSSHHH
T ss_pred cccCH-------HHHHHHHHHcC------CeEEEEecCCCCCHHHH
Confidence 1 111 22333444443 47999999999999985
No 93
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=3.2e-17 Score=148.35 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=88.3
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
....+.++|+++|+.|+|||||+++|+... ... . ..+.+.......+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~------~~~t~~~~~~~~~~ 63 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------E------YDPTIEDSYRKQVV 63 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSS--CCS------------------------C------CCTTCCEEEEEEEE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCC--Ccc------------------------c------cCCccceEEEEEEE
Confidence 334567999999999999999999995321 100 0 00011111112233
Q ss_pred eCC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEcc
Q 011837 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~ 193 (476)
.++ ..+.||||||+.+|...+...+..+|++++|+|++.... + ......+..+.. .++| +++|+||+
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~ 136 (190)
T 3con_A 64 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDVP-MVLVGNKC 136 (190)
T ss_dssp ETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECT
T ss_pred ECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCe-EEEEEECC
Confidence 343 568999999999998888888899999999999987532 1 122222223332 2677 89999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+....... +++..+.+..+ ++++++||++|.|+.++.
T Consensus 137 Dl~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 137 DLPTRTVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp TCSCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHH
T ss_pred cCCcccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 995422222 22333344433 479999999999999863
No 94
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.73 E-value=2e-17 Score=149.89 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=102.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.|+|||||+++|+... .. ......|.|..... ...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~----------------------------~~~~~~~~t~~~~~---~~~ 66 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRK--IA----------------------------FVSKTPGKTRSINF---YLV 66 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSC--CS----------------------------CCCSSCCCCCCEEE---EEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCc--cc----------------------------cccCCCCCccCeEE---EEE
Confidence 3456899999999999999999995321 00 00111233333222 122
Q ss_pred CeEEEEEeCCC----------CcCcH---HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011837 122 TTRFTILDAPG----------HKSYV---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPG----------h~~f~---~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIv 188 (476)
+..+.+||||| +..|. .........+|++++|+|+..+.. ....+.+..+...++| +++
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 45688999999 33343 334445556799999999987642 2444556677777888 889
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+... ...+...+++..++...+ .++++++||++|.|+.++
T Consensus 139 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l 184 (195)
T 3pqc_A 139 VLTKMDKVKM----SERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISEL 184 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHH
T ss_pred EEEChhcCCh----HHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHH
Confidence 9999999432 334455566666666543 358999999999999985
No 95
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=2.6e-17 Score=145.17 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+. +.... ... ...+.... ....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~--~~~~~------------------------~~~---~t~~~~~~-~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ--GIFVE------------------------KYD---PTIEDSYR-KQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH--CCCCC------------------------SCC---CCSEEEEE-EEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCCC------------------------CCC---CCccceEE-EEEEECCEEE
Confidence 458999999999999999999953 21110 000 00111111 1112222346
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcC
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~ 199 (476)
.+.||||||+.+|...+...+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 78999999999999888888899999999999987421 11 22222222222 3677 88999999994321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.. .+++..+.+.++ ..+++++||++|.|+.++
T Consensus 125 --~~~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 125 --VVG----KEQGQNLARQWC-----NCAFLESSAKSKINVNEI 157 (167)
T ss_dssp --CSC----HHHHHHHHHHTT-----SCEEEECBTTTTBSHHHH
T ss_pred --cCC----HHHHHHHHHHcc-----CCcEEEecCCCCCCHHHH
Confidence 111 122333333331 358999999999999985
No 96
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=153.62 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=98.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.++|||||+++|+... .. ......++.+.....+..+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~ 70 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENK--FK-----------------------------QDSNHTIGVEFGSRVVNVG 70 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCC--CC-----------------------------ccCCCcccceeEEEEEEEC
Confidence 3567999999999999999999985311 00 0011222223333344444
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+.+|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+.
T Consensus 71 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---Y---NSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 4 689999999999887777777889999999999987532 1 122333333333 3566 89999999984
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... +... .+...+.+.. +++++++||++|.|+.++..
T Consensus 144 ~~~--~v~~----~~~~~~~~~~------~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 144 PER--EVTF----LEASRFAQEN------ELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GGC--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 211 1111 2223334443 35799999999999998643
No 97
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=3.7e-17 Score=149.63 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=100.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.. .... ......|.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD--SFTP---------------------------AFVSTVGIDFKVKTIYRNDKR 56 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC--CCCS---------------------------CCCCCCSEEEEEEEEEETTEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--CCCC---------------------------CcCCccceeEEEEEEEECCeE
Confidence 34689999999999999999998521 1100 000112333333333333334
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---F---NAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER 129 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc
Confidence 689999999999999988888999999999999987531 1 122333333433 2566 89999999995321
Q ss_pred -ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 200 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... +....+.+.++ ++++++||++|.|+.++..
T Consensus 130 ~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 130 VVSS-------ERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp CSCH-------HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred ccCH-------HHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 111 22233334433 4799999999999998643
No 98
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=1.6e-17 Score=149.35 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
...++|+++|++|+|||||+++|+. +..... ..+ ..+... ...+..+
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~--~~~~~~------------------------~~~---t~~~~~---~~~~~~~~ 50 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT--NAFPGE------------------------YIP---TVFDNY---SANVMVDG 50 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH--SSCCSS------------------------CCC---CSCCEE---EEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc--CCCCCC------------------------cCC---ccccee---EEEEEECC
Confidence 4568999999999999999999853 211100 000 001111 1122333
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~~ 197 (476)
...+.||||||+++|.......+..+|++++|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---H---HHHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence 3567799999999998877778899999999999987531 1 1122 223333333 677 889999999943
Q ss_pred cCccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ....+.+ .++...+.+..++ .+++++||++|.|+.++
T Consensus 124 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 124 D---KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 170 (186)
T ss_dssp C---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred c---chhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHH
Confidence 2 1111111 1233334444432 37999999999999985
No 99
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=2.8e-18 Score=174.06 Aligned_cols=148 Identities=19% Similarity=0.171 Sum_probs=105.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+.... ...+...|+|++.....+++.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~------------------------------~~~~~~~gtT~d~~~~~~~~~ 80 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNV------------------------------SIVSDYAGTTTDPVYKSMELH 80 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEET
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCC------------------------------CccCCCCCeeeeeEEEEEEEC
Confidence 34568999999999999999999853211 112345678888888888877
Q ss_pred Ce-EEEEEeCCCCcCcH-------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEcc
Q 011837 122 TT-RFTILDAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 193 (476)
Q Consensus 122 ~~-~~~liDtPGh~~f~-------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~ 193 (476)
+. .++|||||||.+|. ..+...+..+|++|+|+|+ +.. .++.+.+..+...++| +|+|+||+
T Consensus 81 ~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~-------~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 81 PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APT-------PYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCC-------HHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CCh-------HHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 65 89999999998874 3355677889999999999 332 5788888899999998 89999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+...... +....+.+.+ +++++++||++|.|+.++
T Consensus 151 Dl~~~~~~--------~~~~~l~~~~------g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 151 DVLGEKAE--------ELKGLYESRY------EAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp TTTTCCCT--------HHHHHSSCCT------TCCCCCCSSCCTTSTTTH
T ss_pred CCCCccHH--------HHHHHHHHHc------CCCEEEEECCCCCCHHHH
Confidence 99554321 1222222222 357999999999999985
No 100
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.72 E-value=1.4e-17 Score=149.12 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=89.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|+.|+|||||+++|+... .. ......++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDK--YS-----------------------------QQYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSC--CC-----------------------------TTC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCc--CC-----------------------------cccCCccceEEEEEEEEEc
Confidence 4567999999999999999999995321 10 0111122223333334433
Q ss_pred ---CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEE
Q 011837 122 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 191 (476)
Q Consensus 122 ---~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-------l~i~~iIvviN 191 (476)
...+.||||||+++|.......++.+|++++|+|++.... + ....+.+..+.. .++| +++|+|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---F---ENIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---H---HHHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 3679999999999999888888899999999999987532 1 122222222222 4667 889999
Q ss_pred ccCCCCcC--ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 192 KMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 192 K~Dl~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+|+.... ... +++..+.+.. ...+++++||++|.|+.++.
T Consensus 127 K~Dl~~~~~~v~~-------~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 127 KIDAEESKKIVSE-------KSAQELAKSL-----GDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp CTTSCGGGCCSCH-------HHHHHHHHHT-----TSCCEEEEBTTTTBSHHHHH
T ss_pred CCccccccccCCH-------HHHHHHHHhc-----CCCeEEEEecCCCCCHHHHH
Confidence 99994321 111 1222233321 14579999999999999853
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=2.3e-17 Score=148.37 Aligned_cols=153 Identities=19% Similarity=0.159 Sum_probs=97.4
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|+.|+|||||+++|+... ... . ....+.......+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------~------~~~t~~~~~~~~~~~ 61 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------D------YEPTKADSYRKKVVL 61 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------S------CCTTCCEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------c------CCCccceEEEEEEEE
Confidence 34567999999999999999999995321 100 0 000111111122333
Q ss_pred CC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccC
Q 011837 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~D 194 (476)
++ ..+.||||||+.+|...+...+..+|++++|+|++.... +. .....+..+.. .++| +++|+||+|
T Consensus 62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 134 (187)
T 2a9k_A 62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSD 134 (187)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTCC-EEEEEECGG
T ss_pred CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44 578999999999999888888999999999999986431 11 12222222222 2677 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+.... +.. .+++..+++..+ ++++++||++|.|+.++.
T Consensus 135 l~~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 135 LEDKR--QVS----VEEAKNRAEQWN------VNYVETSAKTRANVDKVF 172 (187)
T ss_dssp GGGGC--CSC----HHHHHHHHHHTT------CEEEECCTTTCTTHHHHH
T ss_pred ccccC--ccC----HHHHHHHHHHcC------CeEEEeCCCCCCCHHHHH
Confidence 84321 111 123334444443 479999999999999863
No 102
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=149.90 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=99.0
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+... ... + ..+.+.+.....+..
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~------------------------~------~~~t~~~~~~~~~~~ 57 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDE--FVE------------------------D------YEPTKADSYRKKVVL 57 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCT------------------------T------CCTTCCEEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------C------CCCccceEEEEEEEE
Confidence 34567999999999999999999985321 110 0 001111111223334
Q ss_pred CC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccC
Q 011837 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~D 194 (476)
++ ..+.||||||+.+|.......+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSD 130 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTT
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEeccC
Confidence 44 478999999999999888888899999999999987431 11 22222222222 2677 899999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+... .+... +++..+++..+ ++++++||++|.|+.++..
T Consensus 131 l~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 131 LEDK--RQVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp CGGG--CCSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred cccc--ccccH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 9432 11111 22333444433 4799999999999998643
No 103
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=1.6e-17 Score=152.71 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=98.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+. +.... .....+.+.....+..+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT--NAFPG------------------------------EYIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH--SCCCC-------------------------------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh--CCCCC------------------------------CcCCeecceeEEEEEEC
Confidence 45679999999999999999999853 21110 01111222222233333
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|.......+..+|++++|+|++.... + .... ..+..+... ++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---F---ENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 3 456699999999998888888899999999999987532 1 1111 223344443 677 88999999994
Q ss_pred CcCccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. ....+.. .++...+.+..++ .+++++||++|.|+.++
T Consensus 148 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 148 DD---KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 195 (204)
T ss_dssp TC---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred cc---hhhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHH
Confidence 32 1111111 1233444555443 37999999999999985
No 104
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=1.3e-17 Score=153.08 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=100.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++++|||||+++|+... . .......++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDT--Y-----------------------------TNDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCC--C-----------------------------CTTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CCCCCCcccceeEEEEEEECC
Confidence 456899999999999999999985311 1 011122233333334444544
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|...+...+..+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 579999999999998888888899999999999987532 1 122222333333 2465 889999999953
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.. +... ++...+....+ ++++++||++|.|+.++..
T Consensus 128 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KR--VVEY----DVAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TC--CSCH----HHHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1111 12223333433 4799999999999998643
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=150.39 Aligned_cols=152 Identities=16% Similarity=0.230 Sum_probs=96.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+. +... ....|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEVV--------------------------------TTKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEEE--------------------------------EECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCcC--------------------------------ccCCcCccceEEEEECC
Confidence 5679999999999999999999841 1100 00111122233455678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++||||+.+|...+...+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999998888888899999999999987531 1 122333333322 4566 8999999999432
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. . . +++...+...... ....+++++||++|.|+.++.
T Consensus 135 ~-~---~----~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 135 L-S---A----SEVSKELNLVELK-DRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp C-C---H----HHHHHHTTTTTCC-SSCEEEEEEBGGGTBTHHHHH
T ss_pred C-C---H----HHHHHHhCccccc-CCceEEEEccCCCCcCHHHHH
Confidence 1 1 1 1222222222121 135689999999999999853
No 106
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=146.39 Aligned_cols=152 Identities=17% Similarity=0.113 Sum_probs=89.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+... .. ......|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQ--ER----------------------------DLHEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCC--Cc----------------------------cccCccccceeEEEEEECCEE
Confidence 356899999999999999999985211 00 000122333332222222223
Q ss_pred eEEEEEeCCCCcCc--HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEEccCCC
Q 011837 123 TRFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 ~~~~liDtPGh~~f--~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l----~i~~iIvviNK~Dl~ 196 (476)
..+.+|||||+..+ .......++.+|++++|+|++.... | ....+.+..+... ++| +++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---F---ESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---H---HHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 57899999999884 3334445678999999999986421 1 1222333334433 677 89999999995
Q ss_pred CcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... .+. ++...+....+ ++++++||++|.|+.++.
T Consensus 125 ~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 125 RCREVSV-------EEGRACAVVFD------CKFIETSATLQHNVAELF 160 (175)
T ss_dssp TTCCSCH-------HHHHHHHHHHT------SEEEECBTTTTBSHHHHH
T ss_pred cccccCH-------HHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Confidence 321 111 12222333333 479999999999999863
No 107
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=6.2e-17 Score=166.31 Aligned_cols=147 Identities=20% Similarity=0.313 Sum_probs=100.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|.+|+|||||+++|+.....+ .+...|+|.+.....+++.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999995322111 11246888888888899999999
Q ss_pred EEEeCCCCcC---------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 126 TILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 126 ~liDtPGh~~---------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
.||||||... +...+..++..||++++|+|+..+.. ....+....++..++| +++|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~- 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAEN- 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCS-
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCC-
Confidence 9999999765 23445567889999999999998753 2334444556667888 8899999998
Q ss_pred CcCccHHHHHHHHHHH-HHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.+ . . ...+ .++ ..+|+. +++++||++|.|+.++.+
T Consensus 123 -~~---~-~---~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 123 -LR---E-F---EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp -HH---H-H---HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred -cc---c-c---HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 21 1 0 1122 222 244542 578999999999998633
No 108
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.72 E-value=3.7e-17 Score=147.98 Aligned_cols=153 Identities=13% Similarity=0.149 Sum_probs=96.0
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...++.++|+++|++++|||||+++|+.. ... ......++.+.....+.
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~ 63 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAG--RFP-----------------------------DRTEATIGVDFRERAVD 63 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHS--SCC-----------------------------SSCCCCCSCCEEEEEEE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcC--CCC-----------------------------CCCCCCcceEEEEEEEE
Confidence 34456799999999999999999998531 111 00112222233333444
Q ss_pred eCC--eEEEEEeCCCCcCcH-HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEc
Q 011837 120 TET--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNK 192 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~-~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK 192 (476)
.++ ..+.||||||+++|. ......++.+|++|+|+|++.... ++ .....+..+.. .++| +++|+||
T Consensus 64 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK 136 (189)
T 1z06_A 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FH---SLPAWIEECKQHLLANDIP-RILVGNK 136 (189)
T ss_dssp ETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHCCCSCCC-EEEEEEC
T ss_pred ECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEC
Confidence 444 679999999999998 566667889999999999987431 11 22222222222 3576 8999999
Q ss_pred cCCCCcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc---cccccc
Q 011837 193 MDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g---~~i~~~ 243 (476)
+|+.... ... ++...+.+..+ ++++++||++| .|+.++
T Consensus 137 ~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 137 CDLRSAIQVPT-------DLAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp TTCGGGCCSCH-------HHHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred ccccccceeCH-------HHHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 9994321 111 22333334433 47999999999 777664
No 109
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=7.8e-17 Score=145.06 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=98.8
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|... ... ......|. ....+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------------------------~~~~t~g~----~~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------------------------HITPTQGF----NIKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------------------------EEEEETTE----EEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------------------------cccCcCCe----EEEEEEECC
Confidence 45689999999999999999998421 000 00011222 223455678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+++|...+...+..+|++++|+|++.... + ....+.+..+. ..++| +++|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---F---EETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---H---HHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 899999999999999888888899999999999987421 1 12222332221 13566 8999999999543
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. . .+++ ...+...... ...++++++||++|.|+.++
T Consensus 133 ~-~---~~~~----~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 133 A-P---ASEI----AEGLNLHTIR-DRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp C-C---HHHH----HHHTTGGGCC-SSCEEEEECCTTTCTTHHHH
T ss_pred C-C---HHHH----HHHhCchhcc-CCceEEEEccCCCCCCHHHH
Confidence 1 1 1222 2222111111 13568999999999999985
No 110
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.6e-17 Score=142.76 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|++|+|||||+++|+. +.... .. ....+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~--~~~~~------------------------~~---~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK--GTFRE------------------------SY---IPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT--CCCCS------------------------SC---CCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHc--CCCCC------------------------CC---CCCccccEE-EEEEECCEEE
Confidence 358999999999999999999953 11100 00 000111111 1111222335
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEccCCCCc
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~Dl~~~ 198 (476)
.+.||||||+.+|.......+..+|++++|+|++.... + .+....+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 78999999999999888888899999999999986432 1 133333333333 2577 8999999998432
Q ss_pred C-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 199 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. ... .+...+.... .++++++||++|.|+.++
T Consensus 125 ~~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 125 REVQS-------SEAEALARTW------KCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp CCSCH-------HHHHHHHHHH------TCEEEECBTTTTBSHHHH
T ss_pred cccCH-------HHHHHHHHHh------CCeEEEecCCCCcCHHHH
Confidence 1 111 1122233333 247999999999999985
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.72 E-value=3.6e-17 Score=148.59 Aligned_cols=153 Identities=12% Similarity=0.184 Sum_probs=96.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+...- .. ......|.|....... .
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~--~- 67 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKN-LA----------------------------RTSSKPGKTQTLNFYI--I- 67 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEE--E-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCC-cc----------------------------ccCCCCCceeeEEEEE--E-
Confidence 34579999999999999999999953110 00 0001123333333222 2
Q ss_pred CeEEEEEeCCC----------CcCcHHHHhhhcc---ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011837 122 TTRFTILDAPG----------HKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPG----------h~~f~~~~~~~~~---~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIv 188 (476)
+..+.|||||| ++.|...+...+. .+|++++|+|++.+.. .+..+.+..+...++| +++
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 34799999999 5555444444444 4499999999988642 2334445566667888 889
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+... .......+++...+.. ....+++++||++|.|+.++
T Consensus 140 v~nK~Dl~~~----~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 140 IATKADKIPK----GKWDKHAKVVRQTLNI-----DPEDELILFSSETKKGKDEA 185 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHTC-----CTTSEEEECCTTTCTTHHHH
T ss_pred EEECcccCCh----HHHHHHHHHHHHHHcc-----cCCCceEEEEccCCCCHHHH
Confidence 9999999432 2233344444443332 12468999999999999985
No 112
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=3.1e-17 Score=150.04 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=95.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|++|+|||||+++|.. +... ....|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD--DRLG--------------------------------QHVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC--C--------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc--CCCC--------------------------------ccCCCCCceeEEEEECC
Confidence 4457999999999999999999832 1110 00012222334566778
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+++|...+...++.+|++++|+|+++... | ....+.+..+.. .++| +++|+||+|+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---L---LESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 999999999999998877778889999999999987531 1 122233332222 3677 8999999999542
Q ss_pred CccHHHHHHHHHHHHHHHHhcc---------CC--cCCCeeEEeeecccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASG---------YN--VKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~---------~~--~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+.+ ++..++.... +. .....+++++||++|.|++++
T Consensus 142 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 142 -ISEE-------RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp -CCHH-------HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred -CCHH-------HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 2222 2233332211 10 012568999999999999985
No 113
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=8.9e-17 Score=146.33 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++++|||||+++|+. +..... . ....+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~~------------------------~---~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK--GTFRDT------------------------Y---IPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH--SCCCCT------------------------T---SCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc--CCCCCc------------------------c---cCcccccee-EEEEECCEE
Confidence 3468999999999999999999953 111100 0 000111111 111122234
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEEccCCCC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+.+|.......+..+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 578999999999999888888899999999999986431 11 22223332322 2567 899999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.....+. ...+...++ ++++++||++|.|+.++
T Consensus 129 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 129 REVDTRE-------AQAVAQEWK------CAFMETSAKMNYNVKEL 161 (199)
T ss_dssp CSSCHHH-------HHHHHHHHT------CEEEECBTTTTBSHHHH
T ss_pred cccCHHH-------HHHHHHHhC------CeEEEEecCCCCCHHHH
Confidence 3222222 222333333 47999999999999985
No 114
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.71 E-value=1.4e-17 Score=149.43 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=95.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|++|+|||||+++|+... .. .+. ....+.+. ...+..++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~------------------------~~~---~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FV------------------------DSY---DPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CC------------------------SCC---CTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CC------------------------CCC---CCCccccE---EEEEEECC
Confidence 457899999999999999999995211 10 000 00112222 22333444
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEEccCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~l~i~~iIvviNK~Dl~ 196 (476)
..+.||||||+++|.......+..+|++++|+|++.... ++ .....+..+ ...++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 667999999999997777777889999999999987421 11 111111112 223677 88999999984
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... +.. .++...+.+..+ ++++++||++|.|+.++..
T Consensus 125 ~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MER--VIS----YEEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTC--CSC----HHHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred hcc--eec----HHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 321 111 123334444443 4799999999999998643
No 115
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=3.6e-17 Score=151.43 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=98.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|+.++|||||+++|+. +.. ..+....++.+.....+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~~ 70 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD--NKF-----------------------------NPKFITTVGIDFREKRVVYN 70 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC--SCC-----------------------------CCEEEEEEEEEEEEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc--CCC-----------------------------CcCCCCceeEEEEEEEEEEC
Confidence 35579999999999999999999842 110 01111222223322233332
Q ss_pred ------------CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCce
Q 011837 122 ------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTK 185 (476)
Q Consensus 122 ------------~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~ 185 (476)
...+.||||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++|
T Consensus 71 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~~p- 143 (217)
T 2f7s_A 71 AQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS---F---LNVRNWMSQLQANAYCENPD- 143 (217)
T ss_dssp C-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH---H---HHHHHHHHTCCCCCTTTCCE-
T ss_pred CccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCC-
Confidence 5679999999999999888888999999999999987431 0 011111211111 3455
Q ss_pred EEEEEEccCCCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 186 LLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 iIvviNK~Dl~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+++|+||+|+... .... +++..+.+..+ ++++++||++|.|+.++.+
T Consensus 144 iilV~NK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 144 IVLIGNKADLPDQREVNE-------RQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp EEEEEECTTCGGGCCSCH-------HHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred EEEEEECCccccccccCH-------HHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 8999999999432 1111 23333444443 4799999999999998643
No 116
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=1.6e-17 Score=150.41 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=99.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++++|||||+++|+. +... . ...|+......+..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~-------------------------~-------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVV-------------------------T-------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCE-------------------------E-------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCC-------------------------C-------cCCCCceEEEEEEECC
Confidence 5679999999999999999999831 1110 0 0011122233455678
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.+|||||+++|...+...+..+|++++|+|+++... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999998877778889999999999987531 1 122233332222 2566 8999999999533
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. . .+++.+. +...... ...++++++||++|.|+.++.
T Consensus 139 ~-~---~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 139 A-S---EAEIAEQ----LGVSSIM-NRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp C-C---HHHHHHH----TTGGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHHH----hChhhcc-CCceEEEEccCCCccCHHHHH
Confidence 1 1 1222222 2111111 235689999999999999853
No 117
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=4.5e-17 Score=146.33 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=98.1
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|++|+|||||+++|+.. .... + ....+.... ...+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~------------------------~-----~~~t~~~~~-~~~~~~ 61 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQK--IFVD------------------------D-----YDPTIEDSY-LKHTEI 61 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHS--CCCS------------------------C-----CCTTCCEEE-EEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhC--CCCC------------------------C-----CCCCcccee-EEEEEe
Confidence 3456799999999999999999999531 1100 0 001111111 223334
Q ss_pred CC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH----HHcCCceEEEEEEccC
Q 011837 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~----~~l~i~~iIvviNK~D 194 (476)
++ ..+.||||||+++|.......++.+|++++|+|+++... |+ ...+.+..+ ...++| +++|+||+|
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 134 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVD 134 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTT
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCC
Confidence 44 446779999999998888888899999999999987532 11 122222222 224677 889999999
Q ss_pred CCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecc-ccccccccc
Q 011837 195 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 244 (476)
Q Consensus 195 l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~-~g~~i~~~~ 244 (476)
+... .... ++...+.+..+ ++++++||+ +|.|+.++.
T Consensus 135 l~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 135 LMHLRKVTR-------DQGKEMATKYN------IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp CSTTCCSCH-------HHHHHHHHHHT------CCEEEEBCSSSCBSHHHHH
T ss_pred chhccCcCH-------HHHHHHHHHhC------CeEEEeccCCCCCCHHHHH
Confidence 8431 1122 22333444443 479999999 999999853
No 118
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-17 Score=154.16 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++++|||||+++|+... ... +....++.+.....+..++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE--FNM-----------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC--CCC-----------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCcccceeEEEEEEECC
Confidence 456899999999999999999985321 110 0111122223333444555
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~~ 197 (476)
..+.||||||+++|...+...++.+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---Y---ENCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---H---HHHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 678999999999998888888899999999999987532 1 1222333334333 566 889999999943
Q ss_pred cC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. ... ++...+.+.. .++++++||++|.|+.++.
T Consensus 133 ~~~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 133 LRAVPT-------EESKTFAQEN------QLLFTETSALNSENVDKAF 167 (223)
T ss_dssp GCCSCH-------HHHHHHHHHT------TCEEEECCCC-CCCHHHHH
T ss_pred ccccCH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11 111 2233334443 3579999999999999863
No 119
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=2.2e-17 Score=147.64 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=97.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|+.|+|||||+++|+.. ... .+.. ...+... ...+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~------------------------~~~~---~t~~~~~---~~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS--YFV------------------------SDYD---PTIEDSY---TKICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS--SCC------------------------SSCC---TTCCEEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC--cCc------------------------cccC---CCcCceE---EEEEEEC
Confidence 345689999999999999999999532 110 0000 0111111 1233444
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHH-H---HcCCceEEEEEEccCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~---~l~i~~iIvviNK~Dl 195 (476)
+ ..+.||||||+++|.......+..+|++++|+|++.... + ......+..+ . ..++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---F---NEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578899999999998887788889999999999987431 1 1122222222 2 23677 8999999999
Q ss_pred CCcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... ... ++...+.... .++++++||++|.|+.++.+
T Consensus 127 ~~~~~v~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 127 ESQRQVPR-------SEASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGCCSCH-------HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred ccccccCH-------HHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 4321 111 1222233333 35799999999999998643
No 120
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=150.40 Aligned_cols=156 Identities=17% Similarity=0.084 Sum_probs=95.8
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|+.|+|||||+++|+... ... .. ....+.+. .....+..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------------------------~~---~~t~~~~~-~~~~~~~~ 69 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGE--FSE------------------------GY---DPTVENTY-SKIVTLGK 69 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSC--CCS------------------------CC---CCCSEEEE-EEEEC---
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCC--CCC------------------------CC---CCccceEE-EEEEEECC
Confidence 34567999999999999999999995311 100 00 00111111 22222334
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~ 196 (476)
....+.||||||+++|.......+..+|++++|+|++.... ++ .....+..+. ..++| +++|+||+|+.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---FQ---VIESLYQKLHEGHGKTRVP-VVLVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---HH---HHHHHHHHHHC-----CCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccCc
Confidence 56788999999999998888888899999999999986431 11 1222222222 23677 89999999984
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
... +... .+...+.+..+ ++++++||++|.|+.++..
T Consensus 143 ~~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 143 PER--EVQA----VEGKKLAESWG------ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEECCTTCHHHHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 321 1111 12223333333 4799999999999998643
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=8e-17 Score=146.33 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=99.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|+.++|||||+++|+.. .... ...+ ..+... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~--~~~~------------------------~~~~---t~~~~~---~~~~~~~ 62 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYAND--AFPE------------------------EYVP---TVFDHY---AVSVTVG 62 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHS--SCCC------------------------SCCC---SSCCCE---EEEEESS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------------CCCC---ccccee---EEEEEEC
Confidence 346789999999999999999999532 1110 0000 001111 1223334
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|.......++.+|++++|+|++.... | .... ..+..+... ++| +++|+||+|+.
T Consensus 63 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---F---QNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred CEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 3 678999999999998888888899999999999987531 1 1222 233344443 677 89999999995
Q ss_pred CcCccHHHHH------HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
......+.+. -..++...+.+..++ .+++++||++|.|+.++
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTV 183 (194)
T ss_dssp TCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHH
T ss_pred ccccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHH
Confidence 3210000000 002233444444443 27999999999999985
No 122
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=150.62 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=83.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|+.|+|||||+++|+.. .... + ... .+.+.....+..+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~--~~~~------------------------~-----~~~-t~~~~~~~~~~~~ 78 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADG--AFPE------------------------S-----YTP-TVFERYMVNLQVK 78 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC--------------------------------------CC-CCCEEEEEEEEET
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcC--CCCC------------------------C-----CCC-ccceeEEEEEEEC
Confidence 455799999999999999999998521 1000 0 000 0111111223333
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHH--cCCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~--l~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|...+...+..+|++++|+|++.... |+ ... ..+..+.. .++| +|+|+||+|+.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhh
Confidence 3 478999999999998888888899999999999987431 11 111 12222332 2677 89999999994
Q ss_pred CcCccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. ....+.+ .++...+.+.+++ .+++++||++|.|+.++.
T Consensus 152 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 152 KD---KSLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVF 200 (214)
T ss_dssp SC---HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHH
T ss_pred cc---chhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHH
Confidence 32 1111111 1233444555443 379999999999999863
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=6.4e-17 Score=147.03 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=98.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
...+..++|+++|+.|+|||||+++|+... ... .....+.... ...+.
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~-----------------------------~~~~t~~~~~-~~~~~ 65 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGE--IPT-----------------------------AYVPTVFENF-SHVMK 65 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSC--CCS-----------------------------SCCCCSEEEE-EEEEE
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCC--CCC-----------------------------ccCCeeeeee-EEEEE
Confidence 345667999999999999999999985311 110 0001111111 11233
Q ss_pred eCC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEEccC
Q 011837 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMD 194 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~l--~i~~iIvviNK~D 194 (476)
.++ ..+.||||||+++|.......++.+|++++|+|++.... +. .. ...+..+... ++| +++|+||+|
T Consensus 66 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~D 138 (194)
T 3reg_A 66 YKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD---NISTKWEPEIKHYIDTAK-TVLVGLKVD 138 (194)
T ss_dssp ETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSE-EEEEEECGG
T ss_pred ECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChh
Confidence 333 457999999999999888888999999999999987531 11 11 1222233333 566 899999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+......+ ...++...+.+.+++. .++++||++|.|+.++.
T Consensus 139 l~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 139 LRKDGSDD----VTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVF 179 (194)
T ss_dssp GCCTTTTC----CCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHH
T ss_pred hccCCCCc----ccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHH
Confidence 95321111 1123344445555442 39999999999999863
No 124
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=5.3e-17 Score=148.66 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=99.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... ... .....++.+.. ..+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~-~~~~~~ 69 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQ--FPE-----------------------------VYVPTVFENYI-ADIEVD 69 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSS--CCS-----------------------------SCCCSSCCCCE-EEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCc--CCc-----------------------------ccCCcccceEE-EEEEEC
Confidence 3456899999999999999999985321 100 00011111111 122333
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|.......+..+|++++|+|++.... + ... ...+..+... ++| +++|+||+|+.
T Consensus 70 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---L---ENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred CEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 3 578999999999998888888899999999999987421 1 112 2233344443 777 88999999995
Q ss_pred CcCccHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
......+.+.+ ..++...+.+.+++ .+++++||++|.|+.++.
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVF 191 (201)
T ss_dssp TCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred cCccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHH
Confidence 32111111100 01233444445443 279999999999999853
No 125
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=2.1e-17 Score=157.82 Aligned_cols=160 Identities=15% Similarity=0.170 Sum_probs=100.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+........ ....++|.+.....+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeC
Confidence 445689999999999999999999643221110 011225555555667788
Q ss_pred CeEEEEEeCCCCcCc-----------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCce
Q 011837 122 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTK 185 (476)
Q Consensus 122 ~~~~~liDtPGh~~f-----------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-----~i~~ 185 (476)
+..++||||||+.++ ...+..+++.+|++|+|+|++. . ..+....+..+... +.|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-------CHHHHHHHHHHHHHhCchhhcc-
Confidence 999999999998775 2223335678999999999985 2 13455555555554 566
Q ss_pred EEEEEE-ccCCCCcCccHHHHHH-HH----HHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 186 LLLVVN-KMDDHTVNWSKERYDE-IE----SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 186 iIvviN-K~Dl~~~~~~~~~~~~-~~----~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.|+++| |+|+...+ +.. +. +.+..++..++.... .+..+++||++|.|+.++..
T Consensus 141 ~i~vv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS-----LMDYMHDSDNKALSKLVAACGGRIC-AFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCC-----HHHHHHHCCCHHHHHHHHHTTTCEE-ECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc-----HHHHHHhcchHHHHHHHHHhCCeEE-EecCcccccccHHHHHHHHH
Confidence 566777 99995321 111 11 223344444432100 00118999999999998643
No 126
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=4e-17 Score=147.39 Aligned_cols=147 Identities=24% Similarity=0.271 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+.++|+++|+.|+|||||+++|+... ...+...++|++.....+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~~~ 54 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-------------------------------VYIGNWPGVTVEKKEGEFEYNGE 54 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-------------------------------EEEEECTTSCCEEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------ccccCCCCeeccceEEEEEeCCc
Confidence 56899999999999999999984210 01112345666666667777889
Q ss_pred EEEEEeCCCCcCcHH------HHhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f~~------~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+|||||+.+|.. .....+ ..+|++++|+|+... .+....+..+...++| +++|.||+|+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~Dl 124 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDL 124 (188)
T ss_dssp EEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhhc
Confidence 999999999998841 122222 358999999998752 2344455555667887 8899999998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..... +......+.+.++ .+++++||++|.|+.++.
T Consensus 125 ~~~~~-------~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 160 (188)
T 2wjg_A 125 AKSLG-------IEIDVDKLEKILG------VKVVPLSAAKKMGIEELK 160 (188)
T ss_dssp HHHTT-------CCCCHHHHHHHHT------SCEEECBGGGTBSHHHHH
T ss_pred ccccc-------chHHHHHHHHHhC------CCeEEEEecCCCCHHHHH
Confidence 32110 0012233333333 479999999999999853
No 127
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=158.58 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.++.++|+++|++|+|||||+++|+. +.+ . . ...|+......+...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~--~~~-------------------------~---~----~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL--GEI-------------------------V---T----TIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS--SCC-------------------------E---E----EEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC--CCC-------------------------C---C----cccccceEEEEEecC
Confidence 45568999999999999999999832 100 0 0 012444445567778
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHHc---CCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTL---GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~l---~i~~iIvviNK~Dl~~ 197 (476)
+..+.||||||+++|.......+..+|++|+|+|+++... |. ...+.+. ++... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 8999999999999999888888999999999999976421 11 2222222 22222 666 899999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. . .+++... +...... ...++++++||++|.|++++.
T Consensus 281 ~~-~---~~~i~~~----~~~~~~~-~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 281 AM-N---AAEITDK----LGLHSLR-HRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp CC-C---HHHHHHH----HTCTTCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred cc-C---HHHHHHH----hchhhhh-cCCCEEEEEECCCCcCHHHHH
Confidence 32 1 1222222 2211111 235789999999999999863
No 128
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.69 E-value=9.2e-17 Score=141.74 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=80.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+++|+... .. ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~---~~---------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVE---DG---------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcc---cc---------------------------CCCCccccceE-EEEEECCEEEE
Confidence 5799999999999999999984110 00 00011223322 11122233467
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCcCc
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 200 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~~~ 200 (476)
+.++||||+.+|.......++.+|++++|+|++.... + ......+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~- 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---F---EKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR- 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---H---HHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC-
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc-
Confidence 8899999999998888788899999999999986431 1 122233333333 3677 88999999995321
Q ss_pred cHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 201 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+... ++...+.... .++++++||++|.|+.++.
T Consensus 123 -~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 123 -EVSV----DEGRACAVVF------DCKFIETSAALHHNVQALF 155 (166)
T ss_dssp -CSCH----HHHHHHHHHT------TCEEEECBGGGTBSHHHHH
T ss_pred -ccCH----HHHHHHHHHh------CCcEEEeccCCCCCHHHHH
Confidence 1111 1122233333 3589999999999999863
No 129
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.1e-16 Score=141.78 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=87.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC--
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 122 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-- 122 (476)
.++|+++|++|+|||||+++|+....... .....+.+.....+..++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 57999999999999999999852111000 001112222233333443
Q ss_pred eEEEEEeCCCCcCcHHHH-hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc----CCceEEEEEEccCCCC
Q 011837 123 TRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~-~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l----~i~~iIvviNK~Dl~~ 197 (476)
..+.+|||||+.+|...+ ...++.+|++++|+|++.... ++ ...+.+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 568899999999987633 344678999999999987431 11 223333333332 677 889999999842
Q ss_pred c-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ..+. ++...+.+.. .++++++||++|.|+.++.
T Consensus 124 ~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 124 SREVSL-------EEGRHLAGTL------SCKHIETSAALHHNTRELF 158 (169)
T ss_dssp GCCSCH-------HHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred cccCCH-------HHHHHHHHHc------CCcEEEecCccCCCHHHHH
Confidence 1 1111 2233344443 3479999999999999863
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=1.9e-17 Score=169.97 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=95.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+...-. ..+...|+|.+.....+++.+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~------------------------------~v~~~~g~T~d~~~~~~~~~~~~~ 53 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS------------------------------IVEDTPGVTRDRIYSSAEWLNYDF 53 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCCccceEEEEEEECCceE
Confidence 68999999999999999999532111 112246788888888888889999
Q ss_pred EEEeCCCCc--------CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 126 TILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 126 ~liDtPGh~--------~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
.||||||+. .|...+..++..||++|+|+|+..+.. ....+....++..++| +++|+||+|+..
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~~ 125 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNTE 125 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC--
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCcc
Confidence 999999986 566666778889999999999998863 2445555566667887 899999999842
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.. ..+.++. .+|+. +++++||++|.|+.++
T Consensus 126 ~~----------~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 126 MR----------ANIYDFY-SLGFG-----EPYPISGTHGLGLGDL 155 (436)
T ss_dssp -------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHH
T ss_pred ch----------hhHHHHH-HcCCC-----CeEEEeCcCCCChHHH
Confidence 11 1111122 33432 6799999999999985
No 131
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=1.6e-16 Score=147.37 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+..+|+++|..++|||||+.+++. +... .+....+..+.....+..++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~--~~f~-----------------------------~~~~~Tig~d~~~k~~~~~~ 59 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY--DSFD-----------------------------NTYQATIGIDFLSKTMYLED 59 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECSS
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh--CCCC-----------------------------CCcCCccceEEEEEEEEecc
Confidence 3458999999999999999999853 2211 11112222233333333433
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH---HcCCceEEEEEEccCCCC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~---~l~i~~iIvviNK~Dl~~ 197 (476)
..+.||||+|+++|.......++.+|++++|.|.+.... |+ .....+..+. ..++| +|+|.||+|+..
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLAD 132 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCGG
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchHh
Confidence 568899999999999888888999999999999887432 22 2222333222 23566 889999999943
Q ss_pred c-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ..+. ++...+.+.++ ++++.+||++|.|+++++
T Consensus 133 ~r~V~~-------~e~~~~a~~~~------~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 133 KRQVSI-------EEGERKAKELN------VMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp GCCSCH-------HHHHHHHHHHT------CEEEEEBTTTTBSHHHHH
T ss_pred cCcccH-------HHHhhHHHHhC------CeeEEEeCCCCcCHHHHH
Confidence 1 1111 23334444443 479999999999999963
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=4.4e-17 Score=151.46 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=103.8
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|+.|+|||||+++|+...- . .......|.+.......+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~--------------------------~---~~~~~t~~~~~~~~~~~~~ 60 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEF--------------------------E---KKYVATLGVEVHPLVFHTN 60 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHH--------------------------T---CEEETTTTEEEEEEEEEET
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCC--------------------------C---CCCCCccceeEEEEEEEEC
Confidence 3445679999999999999999999642110 0 0011233555555555555
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~~ 197 (476)
.....+.||||||+++|.......++.+|++++|+|++.... +. .....+..+... ++| +++|+||+|+..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKD 133 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTCC-EEEEEECTTSSS
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCcccc
Confidence 556789999999999998877778889999999999987542 11 222223333332 677 899999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..... +...+.+.. .++++++||++|.|+.++.
T Consensus 134 ~~~~~--------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 134 RKVKA--------KSIVFHRKK------NLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp CSSCG--------GGCCHHHHH------TCEEEECBGGGTBTTTHHH
T ss_pred ccccH--------HHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 32211 111222332 3579999999999999864
No 133
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2.6e-17 Score=152.48 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=95.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+. +.... ......+.+. ....+...
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~~~---------------------------~~~~t~~~~~--~~~~~~~~ 56 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD--GRFEK---------------------------NYNATVGAVN--HPVTFLDD 56 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT--CSTTC---------------------------EEETTTTEEE--EEEEEEBT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc--CCCCC---------------------------CCCCccceee--EEEEEEeC
Confidence 45679999999999999999998842 11000 0001111111 11222222
Q ss_pred -C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCC
Q 011837 122 -T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 -~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl 195 (476)
+ ..+.||||||+++|.......+..+|++|+|+|++.+... + ...+.+..+.. .++| +++|+||+|+
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC---Q---NLARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH---H---THHHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH---H---HHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 2 6799999999999887777778899999999999976431 1 22222233332 3577 8899999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... + ...+....+.+.. .++++++||++|.|+.++..
T Consensus 130 ~~~~--~----~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 130 KNRQ--K----ISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp C----------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred cccc--c----cCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 4320 0 1112233333333 45799999999999998643
No 134
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=6.9e-17 Score=148.04 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=76.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|+.|+|||||+++|+........ +....+..+.....+..+
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~ 67 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------------------------DYAMTSGVEVVVAPVTIP 67 (208)
T ss_dssp EEEEEEEEEC---------------------------------------------------------------CEEEECT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------------------------CCCCccceEEEEEEEEEC
Confidence 356789999999999999999998532101100 001111123333445555
Q ss_pred ----CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEE
Q 011837 122 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVN 191 (476)
Q Consensus 122 ----~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviN 191 (476)
...+.||||||+++|...+...+..+|++|+|+|++.... + ....+.+..+.. .++| +++|+|
T Consensus 68 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~n 140 (208)
T 2yc2_C 68 DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVAN 140 (208)
T ss_dssp TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEE
T ss_pred CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEE
Confidence 4689999999999999888888999999999999987532 1 123333434443 3666 899999
Q ss_pred ccCCCC-c-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccc-ccccccccc
Q 011837 192 KMDDHT-V-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~-g~~i~~~~~ 245 (476)
|+|+.. . ..+ .+++..+.+.++ ++++++||++ |.|+.++.+
T Consensus 141 K~Dl~~~~~~v~-------~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 141 KTDLPPQRHQVR-------LDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp CC-------CCC-------HHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred CcccchhhccCC-------HHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 999943 1 111 123344444443 4799999999 999998643
No 135
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.6e-16 Score=146.17 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=97.6
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+... ..... ....+.... ..+..+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~~---~~~~~~ 69 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDE--FPEVY---------------------------VPTVFENYV---ADIEVD 69 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSS--CC----------------------------------CCEEE---EEEEET
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCC--CCCcC---------------------------CCcccceEE---EEEEEC
Confidence 4557899999999999999999985321 11000 000111111 123334
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHHc--CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|.......+..+|++++|+|++.... + ... ...+..+... ++| +++|+||+|+.
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---L---ENIPEKWVPEVKHFCPNVP-IILVANKKDLR 142 (207)
T ss_dssp TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---H---HHHHHTHHHHHHHHSTTCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEEchhhh
Confidence 4 578999999999998887788899999999999987421 1 111 2233344443 677 89999999994
Q ss_pred CcCccHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 197 TVNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
......+.+.+ ..++...+....++ .+++++||++|.|++++.
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~ 191 (207)
T 2fv8_A 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVF 191 (207)
T ss_dssp GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred ccccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHH
Confidence 32111111110 01122333334332 279999999999999853
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=1.2e-16 Score=164.22 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=104.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+..... ......|+|.+.....+.+++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~------------------------------~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERA------------------------------LVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------------EECCCC------CCEEEEETT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccc------------------------------ccCCCCCCcCCceEEEEEECC
Confidence 34689999999999999999998532110 011245677777777788899
Q ss_pred eEEEEEeCCCCcCcHHH------------HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 123 TRFTILDAPGHKSYVPN------------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~------------~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
..+.+|||||..++... ....+..+|++++|+|+..+.. .+..+....+...+.| +++|+
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999998544321 2345678999999999998753 2444445556667887 88999
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
||+|+... .+...++..+.+...+...+ ..+++++||++|.|+.++.+
T Consensus 300 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 300 NKWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ECGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred ECccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 99999432 22224444445544443332 35899999999999998643
No 137
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=5.6e-16 Score=144.81 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+++|+.. .. ......+.|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~--~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA--NV-----------------------------DVQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT--CE-----------------------------EEECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CC-----------------------------ccCCCCCcceeeeeeeeecCC
Confidence 34589999999999999999998421 00 001123345555555566678
Q ss_pred eEEEEEeCCCC------cCc---HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEE
Q 011837 123 TRFTILDAPGH------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh------~~f---~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviN 191 (476)
..+.||||||+ +.. ...+......+|++|+|+|++.... |.. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 89999999999 332 1122233578899999999987532 110 1122333444443 677 899999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+..... ...+..+.+..+....+ ...+++++||++|.|+.++.+
T Consensus 151 K~Dl~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMDS---LSIDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC--C---CCHHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCchh---hHHHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHHH
Confidence 999953211 11122233444444432 126899999999999998643
No 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.68 E-value=2.4e-16 Score=154.27 Aligned_cols=161 Identities=13% Similarity=0.186 Sum_probs=105.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-CCe
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 123 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~~~ 123 (476)
..+|+++|.+|+|||||+++|+..... ......+.|++.....+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~------------------------------~~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA------------------------------FDTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT------------------------------GGGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC------------------------------ccccCcCCccceEEEEEEeCCce
Confidence 479999999999999999998431111 1112455677666666654 568
Q ss_pred EEEEEeCCCCcCcHH-----HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--CCceEEEEEEccCCC
Q 011837 124 RFTILDAPGHKSYVP-----NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 124 ~~~liDtPGh~~f~~-----~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
.+.+|||||+++|.. .....++.+|++|+|+|++.... ++......+.+..+... ++| +++|+||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 899999999999943 33444578999999999987532 10000111112222222 677 89999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..+..++.++...+++..+.+.+|+. .++++++||++ .|+.+.
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 32111222224556777777777753 46899999999 666654
No 139
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.68 E-value=2.3e-16 Score=162.62 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=87.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+..... ......|+|.+.....+..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a------------------------------~vs~~~gtT~d~~~~~i~~~g 280 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERA------------------------------IVSHMPGTTRDYIEECFIHDK 280 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCc------------------------------ccCCCCCceEEEEEEEEEECC
Confidence 34578999999999999999998532110 111235678888778888899
Q ss_pred eEEEEEeCCCCcCcHHH--------HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEEcc
Q 011837 123 TRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKM 193 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~--------~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-~i~~iIvviNK~ 193 (476)
..+.||||||+.++... +...+..+|++++|+|++.+... .+..+...++..+ ++| +|+|+||+
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~ 353 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKL 353 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECT
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECc
Confidence 99999999999876432 33457899999999999987531 1222344444444 455 89999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+.... .... +.+.. .++ .+++++||++|.|++++.
T Consensus 354 Dl~~~~--~~~~----~~l~~----~~~-----~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 354 DRAANA--DALI----RAIAD----GTG-----TEVIGISALNGDGIDTLK 389 (476)
T ss_dssp TSCTTT--HHHH----HHHHH----HHT-----SCEEECBTTTTBSHHHHH
T ss_pred CCCCcc--chhH----HHHHh----cCC-----CceEEEEECCCCCHHHHH
Confidence 995432 2111 12222 122 379999999999999853
No 140
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=4e-17 Score=146.35 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=91.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+. +....... ... +.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~--~~~~~~~~-----------------~t~----------~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYV-----------------PTV----------FDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH--SCCC-------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCC-----------------Cee----------eeeEE-EEEEECCEE
Confidence 4568999999999999999999853 21111000 000 00000 001112234
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCcC
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~~~~ 199 (476)
..+.||||||+++|.......++.+|++++|+|++.... + .... ..+..+... ++| +++|+||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD- 127 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEechhhhcC-
Confidence 567799999999998888888899999999999987431 1 1111 122333332 677 8899999998322
Q ss_pred ccHHHHH-------HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 200 WSKERYD-------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 200 ~~~~~~~-------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+ ... ...++...+.+..++ .+++++||++|.|+.++
T Consensus 128 -~~-~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 171 (182)
T 3bwd_D 128 -KQ-FFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGV 171 (182)
T ss_dssp -HH-HHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHH
T ss_pred -cc-cccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHH
Confidence 11 100 012333444444442 37999999999999985
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.68 E-value=5.4e-17 Score=155.75 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
.++|+++|++|+|||||+++|....- ......|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-------------------------------~v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-------------------------------RVGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-------------------------------CCCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-------------------------------cccCCCCCcEEEEEEEEec-CCe
Confidence 47899999999999999999842100 0111246777665555555 778
Q ss_pred EEEEeCCCCcCcHH------HHhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q 011837 125 FTILDAPGHKSYVP------NMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 196 (476)
Q Consensus 125 ~~liDtPGh~~f~~------~~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~ 196 (476)
+.||||||+.+|.. .....+ ..+|++++|+|++... ........+..+++| +|+|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---------RNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---------HHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---------hHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999988752 112223 3699999999997632 233344455667998 88999999983
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... . +......+.+.+| ++++++||++|.|+.++
T Consensus 121 ~~~----~---~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 121 DGQ----G---KKINVDKLSYHLG------VPVVATSALKQTGVDQV 154 (272)
T ss_dssp HHT----T---CCCCHHHHHHHHT------SCEEECBTTTTBSHHHH
T ss_pred CcC----C---cHHHHHHHHHHcC------CCEEEEEccCCCCHHHH
Confidence 211 0 0012222333333 47999999999999985
No 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.68 E-value=9.9e-17 Score=147.91 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
...++|+++|++|+|||||+++|+. +.... +..+ ..+... ...+..+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~--~~~~~------------------------~~~~---t~~~~~---~~~~~~~~ 54 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------DYIP---TVFDNF---SANVAVDG 54 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH--SCCCS------------------------SCCC---SSCCCE---EEEEECSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc--CCCCc------------------------cCCC---ccceeE---EEEEEECC
Confidence 4568999999999999999999853 21110 0000 001111 1122233
Q ss_pred -CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011837 122 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 -~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~~ 197 (476)
...+.||||||+++|.......++.+|++|+|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 127 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---Y---ENVLKKWMPELRRFAPNVP-IVLVGTKLDLRD 127 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTCC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhh
Confidence 3689999999999998888888899999999999987431 1 1111 223333333 677 899999999832
Q ss_pred cCccHHHHHH-----HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ...... ..++...+.+.+++ .+++++||++|.|+.++.
T Consensus 128 ~---~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 128 D---KGYLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp C---HHHHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred C---ccccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHH
Confidence 2 110000 12333444444443 379999999999999863
No 143
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.67 E-value=2e-16 Score=141.18 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=93.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
+..+|+++|++|+|||||+++|....... .....++|.+.....+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------------------------VTDIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------------CCSSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce------------------------------eeCCCCceeceeeEEEEECCe
Confidence 44789999999999999999985311000 011234555555556677888
Q ss_pred EEEEEeCCCCcCcH--------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEc
Q 011837 124 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNK 192 (476)
Q Consensus 124 ~~~liDtPGh~~f~--------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK 192 (476)
.+.+|||||+.++. ..+...+..+|++++|+|++.... + +..+.+..+... ++| +|+|+||
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~----~~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA---V----DPAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC---C----SHHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC---H----HHHHHHHHHHHhcccCCC-EEEEEEC
Confidence 89999999987642 112345688999999999987642 1 222222333332 577 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+.... . .+.+ ....+++++||++|.|+.++
T Consensus 125 ~Dl~~~~--~-----------~~~~------~~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 125 ADITGET--L-----------GMSE------VNGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp HHHHCCC--C-----------EEEE------ETTEEEEECCTTTCTTHHHH
T ss_pred ccCCcch--h-----------hhhh------ccCCceEEEeCCCCCCHHHH
Confidence 9983211 0 0000 12468999999999999985
No 144
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=143.42 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=94.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
...+.++|+++|+.|+|||||+++|+... ... + ....+.+.....+..
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~------------------------~------~~~t~~~~~~~~~~~ 63 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPT------------------------E------YIPTAFDNFSAVVSV 63 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCC------------------------C------CCCcccceeEEEEEE
Confidence 44567999999999999999999985311 100 0 000111111223344
Q ss_pred CC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCC
Q 011837 121 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl 195 (476)
++ ..+.||||||+++|.......+..+|++++|+|++.... + .... ..+..+... ++| +++|+||+|+
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---F---QNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---H---HHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 44 467799999999998777777889999999999987531 1 1111 122223332 677 8899999999
Q ss_pred CCcCccHHHHHH---------HHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 196 HTVNWSKERYDE---------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 196 ~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
... ...... ..++...+.+..++ .+++++||++|.|+.++.
T Consensus 137 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~ 186 (201)
T 2q3h_A 137 RED---VKVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVF 186 (201)
T ss_dssp GGC---HHHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHH
T ss_pred hhc---hhhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHH
Confidence 431 110000 11233334444432 379999999999999863
No 145
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=4.3e-18 Score=155.68 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=92.9
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++++|||||+++|+. +.. ..+....++.+.....+..+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 78 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFAD--DTY-----------------------------TESYISTIGVDFKIRTIELD 78 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBC--CCC-----------------------------CCHHHHHHCCSEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc--CCC-----------------------------CCCcCCcccceEEEEEEEEC
Confidence 34579999999999999999998842 111 11112333444444455555
Q ss_pred C--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q 011837 122 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 196 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l---~i~~iIvviNK~Dl~ 196 (476)
+ ..+.||||||+++|.......+..+|++++|+|+++... + ....+.+..+... ++| +++|+||+|+.
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---F---NNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---H---HHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 5 579999999999998888888899999999999987532 1 1222223333332 566 88999999994
Q ss_pred CcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 197 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
..... .. ++...+...+ .++++++||++|.|+.++
T Consensus 152 ~~~~v--~~----~~~~~~~~~~------~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 152 TKKVV--DY----TTAKEFADSL------GIPFLETSAKNATNVEQS 186 (199)
T ss_dssp --CCC--CS----CC-CHHHHTT------TCCBCCCCC---HHHHHH
T ss_pred ccccC--CH----HHHHHHHHHc------CCeEEEEECCCCCCHHHH
Confidence 32100 00 1222333333 347899999999999985
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=4.3e-16 Score=144.25 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=97.1
Q ss_pred cccccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEee-e
Q 011837 36 QETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-G 114 (476)
Q Consensus 36 ~~~~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~-~ 114 (476)
.+........++|+++|..++|||||+++|+. +.... . ....+.... .
T Consensus 18 ~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~--~~~~~------------------------~-----~~~t~~~~~~~ 66 (214)
T 3q3j_B 18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAK--DCYPE------------------------T-----YVPTVFENYTA 66 (214)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHH--SCCCS------------------------S-----CCCCSEEEEEE
T ss_pred ccCCCCccceEEEEEECcCCCCHHHHHHHHhc--CCCCC------------------------C-----cCCeeeeeEEE
Confidence 33344445679999999999999999999853 11110 0 001111111 1
Q ss_pred eEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCc-hHHHHHHHHHc--CCceEEEEEE
Q 011837 115 RAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQ-TREHVMLAKTL--GVTKLLLVVN 191 (476)
Q Consensus 115 ~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~q-t~e~l~~~~~l--~i~~iIvviN 191 (476)
...+......+.||||||+++|.......++.+|++|+|+|++.... |. . ....+..+... ++| +++|.|
T Consensus 67 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~n 139 (214)
T 3q3j_B 67 CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD---SALKKWRTEILDYCPSTR-VLLIGC 139 (214)
T ss_dssp EEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH---HHHTHHHHHHHHHCTTSE-EEEEEE
T ss_pred EEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEE
Confidence 11233344679999999999998888788899999999999987531 11 1 12223333333 666 889999
Q ss_pred ccCCCCcCccHHHHH---------HHHHHHHHHHHhccCCcCCCeeEEeeecccccc-ccccc
Q 011837 192 KMDDHTVNWSKERYD---------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRV 244 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~-i~~~~ 244 (476)
|+|+... ..... ...++...+.+.+++. +++++||++|.| +.+++
T Consensus 140 K~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~e~SA~~g~g~v~~lf 194 (214)
T 3q3j_B 140 KTDLRTD---LSTLMELSHQKQAPISYEQGCAIAKQLGAE-----IYLEGSAFTSEKSIHSIF 194 (214)
T ss_dssp CGGGGGC---HHHHHHHHHTTCCCCCHHHHHHHHHHHTCS-----EEEECCTTTCHHHHHHHH
T ss_pred Chhhccc---hhhhhhhcccccCccCHHHHHHHHHHcCCC-----EEEEeccCCCcccHHHHH
Confidence 9999431 00000 0122334445554432 799999999998 99863
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=6.1e-16 Score=146.54 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=100.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+........ ....|+|.......+.++
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR-----------------------------LGATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCccccEEEEEEEEC
Confidence 356799999999999999999999643221111 011235555555667788
Q ss_pred CeEEEEEeCCCC--------cCcHHHHhhhc----cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc------CC
Q 011837 122 TTRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GV 183 (476)
Q Consensus 122 ~~~~~liDtPGh--------~~f~~~~~~~~----~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l------~i 183 (476)
+..++||||||. .++...+..++ ..+|++|+|+|++. .. ....+.+..+... +.
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~-------~~~~~~~~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FT-------AQDQQAVRQVRDMFGEDVLKW 140 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CC-------HHHHHHHHHHHHHHCGGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CC-------HHHHHHHHHHHHHhChhhhcc
Confidence 999999999997 66777776665 89999999999975 21 3444445555543 56
Q ss_pred ceEEEEEEccCCCCcCccHHHHHHH--HHHHHHHHHhccCCcCCCeeEEeeeccc-----ccccccc
Q 011837 184 TKLLLVVNKMDDHTVNWSKERYDEI--ESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTR 243 (476)
Q Consensus 184 ~~iIvviNK~Dl~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~ipvSa~~-----g~~i~~~ 243 (476)
| +|++.||+|+... +.+.+-.. .+.++.+++.+|. +++++++.. +.|+.++
T Consensus 141 ~-iilv~nK~Dl~~~--~~~~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~~L 198 (247)
T 3lxw_A 141 M-VIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVEQL 198 (247)
T ss_dssp E-EEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHHHH
T ss_pred E-EEEEEchHhcCCC--CHHHHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHHHH
Confidence 6 8899999999443 22221111 1346777777654 355555443 5777774
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.3e-15 Score=138.64 Aligned_cols=151 Identities=19% Similarity=0.145 Sum_probs=93.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
++.++|+++|++|+|||||+++|+... ... ... ...+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~------------------------~~~---~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR--FIW------------------------EYD---PTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC--CCS------------------------CCC---TTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCc------------------------ccC---CCCCceE-EEEEEECCEE
Confidence 456899999999999999999995321 100 000 0011111 1111222234
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~~ 198 (476)
..+.||||||+.+ .......+..+|++++|+|++.... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~ 147 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---F---EEVLPLKNILDEIKKPKNVT-LILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhhCCCCCc-EEEEEECcccccc
Confidence 6799999999998 5555667789999999999987421 1 122222333322 4677 8999999999432
Q ss_pred -CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccc-cccccc
Q 011837 199 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRV 244 (476)
Q Consensus 199 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~~ 244 (476)
..+. ++...+.+..+ ++++++||++|. |+.++.
T Consensus 148 ~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 148 RQVST-------EEGEKLATELA------CAFYECSACTGEGNITEIF 182 (196)
T ss_dssp CCSCH-------HHHHHHHHHHT------SEEEECCTTTCTTCHHHHH
T ss_pred cccCH-------HHHHHHHHHhC------CeEEEECCCcCCcCHHHHH
Confidence 1111 12223333333 479999999999 999863
No 149
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.65 E-value=7.8e-16 Score=138.94 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=93.4
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
....+.++|+++|..|+|||||+++|+. +.... ...+ |.......+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~--~~~~~------------------------~~~~-------t~~~~~~~~~ 61 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLT--GTYVQ------------------------EESP-------EGGRFKKEIV 61 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHH--SSCCC------------------------CCCT-------TCEEEEEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------CcCC-------CcceEEEEEE
Confidence 3456679999999999999999999853 21110 0000 0111113344
Q ss_pred eCC--eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEcc
Q 011837 120 TET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 120 ~~~--~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~ 193 (476)
.++ ..+.||||||+++|. .++.+|++++|+|+++... |+ .....+..+.. .++| +++|.||+
T Consensus 62 ~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 129 (184)
T 3ihw_A 62 VDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---FQ---TVYNYFLRLCSFRNASEVP-MVLVGTQD 129 (184)
T ss_dssp ETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHTTSCGGGSC-EEEEEECT
T ss_pred ECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 444 567789999999987 5567999999999987531 11 11222333333 3566 88999999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 194 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+...+..... .++...+.+.++ .++++++||++|.|+.+++
T Consensus 130 Dl~~~~~~~v~----~~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 130 AISAANPRVID----DSRARKLSTDLK-----RCTYYETCATYGLNVERVF 171 (184)
T ss_dssp TCBTTBCCCSC----HHHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHH
T ss_pred ccccccccccC----HHHHHHHHHHcC-----CCeEEEecCCCCCCHHHHH
Confidence 98421111111 123334444443 2589999999999999863
No 150
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=140.40 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=90.3
Q ss_pred ccCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEE
Q 011837 39 EGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF 118 (476)
Q Consensus 39 ~~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~ 118 (476)
.......++|+++|..|+|||||+++|+... ... +..+ ..+.+.. ....+
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~------------------------~~~~---t~~~~~~-~~~~~ 64 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKR--FIS------------------------EYDP---NLEDTYS-SEETV 64 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSS--CCS------------------------CCCT---TCCEEEE-EEEEE
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCC--CCc------------------------ccCC---Cccceee-EEEEE
Confidence 3344567999999999999999999995321 100 0000 1111111 11112
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 192 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK 192 (476)
......+.||||||+++|.. +...++.+|++++|+|++.... |+ ...+.+..+.. .++| +++|+||
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK 136 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNK 136 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEEC
T ss_pred CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEEC
Confidence 22346788999999998865 3457788999999999986421 11 22223333332 3677 8999999
Q ss_pred cCCCCcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeec-ccccccccc
Q 011837 193 MDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa-~~g~~i~~~ 243 (476)
+|+.... .+. ++...+.+..+ ++++++|| ++|.|+.++
T Consensus 137 ~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 137 LDMAQYRQVTK-------AEGVALAGRFG------CLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp GGGGGGCSSCH-------HHHHHHHHHHT------CEEEECCSSSCSHHHHHH
T ss_pred cchhhcCccCH-------HHHHHHHHHcC------CcEEEEeecCccccHHHH
Confidence 9994311 111 22333444443 47999999 899999985
No 151
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=139.53 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=93.5
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.....++|+++|.+|+|||||+++|....+... ...+++.+.....+..
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 67 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------------------HEPENPEDTYERRIMV 67 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------------------GTTTSCTTEEEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------------------CCCCcccceEEEEEEE
Confidence 345568999999999999999999842111100 0111122222223334
Q ss_pred CC--eEEEEEeCCCCcCcHH-HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEcc
Q 011837 121 ET--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~--~~~~liDtPGh~~f~~-~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~ 193 (476)
++ ..+.+|||||+.+|.. .....++.+|++|+|+|++.... |+ ...+.+..+.. .++| +|+|.||+
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~ 140 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKS 140 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECT
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeech
Confidence 44 4678899999998765 33345678999999999986421 11 22333333333 2677 88999999
Q ss_pred CCCCcC-ccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 194 DDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 194 Dl~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+.... .+. ++...+.+..+ ++++++||++|.|+.++.
T Consensus 141 Dl~~~~~v~~-------~~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 141 DLARSREVSL-------EEGRHLAGTLS------CKHIETSAALHHNTRELF 179 (195)
T ss_dssp TCTTTCCSCH-------HHHHHHHHHTT------CEEEEEBTTTTBSHHHHH
T ss_pred hccccCCcCH-------HHHHHHHHHhC------CEEEEEcCCCCCCHHHHH
Confidence 995321 111 12223333333 479999999999999863
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.65 E-value=1.7e-16 Score=163.91 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=99.9
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
..+..++|+++|++|+|||||+++|+...-. ......|+|.+.....+++
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~------------------------------~v~~~~g~t~~~~~~~~~~ 68 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERIS------------------------------IVEDTPGVTRDRIYSSAEW 68 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTT
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCc------------------------------ccCCCCCcceeEEEEEEEE
Confidence 3455689999999999999999999531100 1112467888888888888
Q ss_pred CCeEEEEEeCCC--------CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 121 ETTRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~~~~~liDtPG--------h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
.+..+.+||||| ++.|...+..++..+|++|+|+|+..+.. ....+.+..++..++| +|+|+||
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~NK 140 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNK 140 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEEC
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEEC
Confidence 899999999999 66777777788899999999999988763 4556666777777888 8899999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|+... . ....+ +..+++. ..+++||++|.|+.++
T Consensus 141 ~D~~~~--~--------~~~~e-~~~lg~~-----~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 141 LDNTEM--R--------ANIYD-FYSLGFG-----EPYPISGTHGLGLGDL 175 (456)
T ss_dssp C-------------------CC-SGGGSSS-----SEEECCTTTCTTHHHH
T ss_pred ccchhh--h--------hhHHH-HHHcCCC-----ceEEeecccccchHHH
Confidence 998321 0 11111 1233442 4579999999999985
No 153
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=1.4e-15 Score=137.04 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=95.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.+..++|+++|++|+|||||+++|+.. .... .. ...+.... ...+..
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~--~~~~------------------------~~-----~~t~~~~~-~~~~~~~ 51 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD--CFPE------------------------NY-----VPTVFENY-TASFEID 51 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS--CCCS------------------------SC-----CCCSEEEE-EEEEECS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------------CC-----CCccceeE-EEEEEEC
Confidence 345689999999999999999998531 1100 00 00011111 112222
Q ss_pred -CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCCC
Q 011837 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 -~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl~ 196 (476)
....+.||||||+++|.......+..+|++++|+|++.... |+ .. ...+..+.. .++| +++|.||+|+.
T Consensus 52 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34678999999999998777778899999999999987431 11 11 111222333 2566 89999999994
Q ss_pred CcCccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeecc-cccccccc
Q 011837 197 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTR 243 (476)
Q Consensus 197 ~~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~-~g~~i~~~ 243 (476)
.. .....++ .++...+.+.++ ..+++++||+ +|.|+.++
T Consensus 125 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 125 TD---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDI 173 (184)
T ss_dssp GC---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHH
T ss_pred cc---hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHH
Confidence 21 1111111 123444444443 2479999999 68999985
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.64 E-value=6.4e-16 Score=161.44 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=102.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.+..++|+++|.+|+|||||+++|+... .. . ...|+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~-------------------------~-------~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQ--SV-------------------------T-------TIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSS--CC-------------------------C-------CCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------C-------cCCccceeEEEEEeC
Confidence 3557899999999999999999995321 00 0 012334444556778
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl~~ 197 (476)
+..+.||||||+++|.......+..+|++|+|+|++.... |. ...+.+..+.. .++| +|+|+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 8999999999999999888888999999999999987531 11 12222222221 3677 889999999954
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. . .++ +...+..... ....++++++||++|.|+.++.
T Consensus 438 ~~-~---~~~----~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 438 AM-K---PHE----IQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp CC-C---HHH----HHHHTTCTTC-CSSCEEEEECBTTTTBTHHHHH
T ss_pred CC-C---HHH----HHHHhchhhh-hcCCeEEEEEECCCCCCHHHHH
Confidence 21 1 112 2222211111 1235689999999999999963
No 155
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2e-17 Score=151.68 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=97.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeE--EEE
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA--HFE 119 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~--~~~ 119 (476)
.++.++|+++|++|+|||||+++|+. +..... ....+.+.... .+.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~ 74 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT--NAFPGE------------------------------YIPTVFDNYSANVMVD 74 (204)
Confidence 45679999999999999999999852 111100 00001011111 122
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 196 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~ 196 (476)
.....+.||||||+++|.......+..+|++++|+|++.... +. ... ..+..+... ++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~ 147 (204)
T 3th5_A 75 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
Confidence 234567799999999998888888899999999999987542 11 221 222333333 677 88999999994
Q ss_pred CcCccHHHHH------HHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 197 TVNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 197 ~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
......+.+. ...++...+.+..++ .+++++||++|.|++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 3211111110 111222233333321 2789999999999998643
No 156
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.62 E-value=5.5e-15 Score=131.99 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=88.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.+.++|+++|..++|||||+++|+. +... +. ....+... ...+..++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~--~~~~-------------------------~~---~~t~~~~~---~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT--GSYQ-------------------------VL---EKTESEQY---KKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH--SCCC-------------------------CC---SSCSSSEE---EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh--CCCC-------------------------Cc---CCCcceeE---EEEEEECC
Confidence 4568999999999999999999853 1111 00 00111111 12233333
Q ss_pred --eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccC
Q 011837 123 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 194 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~D 194 (476)
..+.||||||++++ ..++.+|++++|+|++.... |+ .....+..+.. .++| +++|.||+|
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---FQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQDR 119 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECTT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 56889999999873 34567999999999987431 11 11221112222 2566 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+.......... ++...+.+..+ ..+++++||++|.|+.++.+
T Consensus 120 l~~~~~~~v~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 120 ISASSPRVVGD----ARARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp CBTTBCCCSCH----HHHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccccCcCCH----HHHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 83211000011 22223333321 46899999999999998643
No 157
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=2.4e-15 Score=138.22 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe-
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 120 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~- 120 (476)
.+..++|+++|..|+|||||+++|+.. ... ......+.... ...+..
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~-----------------------------~~~~~t~~~~~-~~~~~~~ 72 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKD--CFP-----------------------------ENYVPTVFENY-TASFEID 72 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS--CCC-----------------------------SSCCCCSEEEE-EEEEESS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCcCCccceeE-EEEEEEC
Confidence 456799999999999999999999531 110 00001111111 112233
Q ss_pred -CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCch-HHHHHHHHH--cCCceEEEEEEccCCC
Q 011837 121 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDH 196 (476)
Q Consensus 121 -~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt-~e~l~~~~~--l~i~~iIvviNK~Dl~ 196 (476)
....+.||||||+++|.......+..+|++|+|+|++.... |. .. ...+..+.. .++| +|+|.||+|+.
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 34679999999999998777777889999999999987431 11 11 112222333 2566 89999999994
Q ss_pred CcCccHHHHHHH---------HHHHHHHHHhccCCcCCCeeEEeeecc-ccccccccc
Q 011837 197 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRV 244 (476)
Q Consensus 197 ~~~~~~~~~~~~---------~~~l~~~l~~~~~~~~~~~~~ipvSa~-~g~~i~~~~ 244 (476)
.. .....++ .++...+.+.++ ..+++++||+ +|.|+.++.
T Consensus 146 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 146 TD---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIF 195 (205)
T ss_dssp GC---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHH
T ss_pred cc---hhhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHH
Confidence 21 1111111 123344444443 2479999999 689999853
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.61 E-value=3.6e-15 Score=143.46 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|++|+|||||+++|+...-...+. .........+++++.....+..++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-----------------------~~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-----------------------PGPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC-----------------------CCcccccCCceEEEEEEEEEecCCe
Confidence 35899999999999999999985321110000 000001123344444444454444
Q ss_pred -eEEEEEeCCCCcCc-------HHHH-------hhhc-------------cccCEEEEEEECCC-CccccccCCCCchHH
Q 011837 123 -TRFTILDAPGHKSY-------VPNM-------ISGA-------------SQADIGVLVISARK-GEFETGFEKGGQTRE 173 (476)
Q Consensus 123 -~~~~liDtPGh~~f-------~~~~-------~~~~-------------~~aD~avlVVda~~-g~~e~~~~~~~qt~e 173 (476)
..++||||||+.++ .... ...+ ..+|+++++|++.. +.. ....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-------~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-------PLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-------HHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-------HHHHH
Confidence 48999999998433 1111 1111 13789999997665 432 34455
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 174 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 174 ~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.+..+.. ++| +|+|+||+|+. ........++.+...+...+ ++++++||.+|+|+.++
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~----~~~e~~~~~~~i~~~l~~~~------i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 194 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCC-----------
T ss_pred HHHHHhc-cCC-EEEEEeccCCC----CHHHHHHHHHHHHHHHHHcC------CeEEcCCCCCChhHHHH
Confidence 5555554 787 89999999983 24556666667777776644 46889999999999885
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.61 E-value=1.9e-15 Score=156.00 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=102.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
..++|+++|.+|+|||||+++|+...-.+ + ....|+|.+.....+..++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------------------v------s~~~gTT~d~~~~~i~~~g~ 291 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------------------V------TDIPGTTRDVISEEIVIRGI 291 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------------------C------CCSSCCSSCSCCEEEEETTE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------------------c------CCCCCeeeeeEEEEEecCCe
Confidence 34899999999999999999996432111 1 11346677777777888899
Q ss_pred EEEEEeCCCCc-CcH--------HHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 124 RFTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 124 ~~~liDtPGh~-~f~--------~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.+.||||||+. ++. ..+...+..+|++|+|+|++.+.. .+..+.+..+ .+.| +|+|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 99999999998 653 345567789999999999987642 1223333222 3666 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+... .+ .+ ++..++ ++ ..+++++||++|.|++++.+
T Consensus 362 L~~~-~~---~~----~~~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 362 VVEK-IN---EE----EIKNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp SCCC-CC---HH----HHHHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred cccc-cC---HH----HHHHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 9532 12 11 222222 11 24799999999999998643
No 160
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=139.58 Aligned_cols=160 Identities=15% Similarity=0.183 Sum_probs=92.8
Q ss_pred cCccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 40 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
......++|+++|++|+|||||+++|+...-. .......++|.+.....+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~-----------------------------~~~~~~~~~t~~~~~~~~~ 74 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVF-----------------------------HSGTAAKSITKKCEKRSSS 74 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCS-----------------------------CC-------CCSCEEEEEE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcC-----------------------------ccCCCCCceeeeEEEEEEE
Confidence 34456799999999999999999999532110 0011122456666666778
Q ss_pred eCCeEEEEEeCCCCc-----------CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-----HcCC
Q 011837 120 TETTRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGV 183 (476)
Q Consensus 120 ~~~~~~~liDtPGh~-----------~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-----~l~i 183 (476)
+.+..++||||||.. .+...+......+|++|+|+|++... ....+.+..+. ....
T Consensus 75 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~ 146 (239)
T 3lxx_A 75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARS 146 (239)
T ss_dssp ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGG
T ss_pred eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccc
Confidence 889999999999954 34444445556789999999987532 23333333332 1334
Q ss_pred ceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccc-----cccccc
Q 011837 184 TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-----LNMKTR 243 (476)
Q Consensus 184 ~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g-----~~i~~~ 243 (476)
| +++|+||+|+......++.+....+.++.+++.++. +++++++..+ .++.++
T Consensus 147 ~-~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 147 F-MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp G-EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred e-EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 5 889999999853321111222222456667777653 4666665533 455553
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=2.1e-15 Score=139.54 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=86.1
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+...- .. ... ....++... ..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~--~~--------------------------~~~--~~~~~~~~~-----~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP--------------------------TVV--SQEPLSAAD-----YD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSC--CC--------------------------BCC--CSSCEEETT-----GG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC--CC--------------------------eee--ecCceEEEE-----ee
Confidence 34568999999999999999999953210 00 000 001111111 15
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccc----cCEEEEEEECC-CCccccccCCCCchHHHHHHHHH-------cCCceEEEE
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLV 189 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~----aD~avlVVda~-~g~~e~~~~~~~qt~e~l~~~~~-------l~i~~iIvv 189 (476)
...+.|+||||+.+|...+...+.. +|++|+|+|++ ... .+ ....+.+..+.. .++| +++|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KL---TTTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CC---HHHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HH---HHHHHHHHHHHhcccccccCCCC-EEEE
Confidence 5789999999999998777776665 89999999998 211 01 123333322222 3677 8999
Q ss_pred EEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccc
Q 011837 190 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 240 (476)
Q Consensus 190 iNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i 240 (476)
+||+|+.......+..+.+.+++..+.... ..+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERR------KKSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHH------HHHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHH------hcccccccccccccc
Confidence 999999654322223333344444444433 246899999998864
No 162
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.60 E-value=1.3e-15 Score=137.48 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=89.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
++|+++|++|+|||||+++|+.. .. ......|+|.+.... ... .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~--~~-----------------------------~~~~~~~~t~~~~~~--~~~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK--KV-----------------------------RRGKRPGVTRKIIEI--EWK--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC--CC-----------------------------SSSSSTTCTTSCEEE--EET--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CC-----------------------------ccCCCCCccceeEEE--ecC--CE
Confidence 58999999999999999998521 11 011122333332222 222 78
Q ss_pred EEEeCCC-----------CcCcHHHHhh---h-ccccCEEEEEEECCCCccc-ccc---CCCCchHHHHHHHHHcCCceE
Q 011837 126 TILDAPG-----------HKSYVPNMIS---G-ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 186 (476)
Q Consensus 126 ~liDtPG-----------h~~f~~~~~~---~-~~~aD~avlVVda~~g~~e-~~~---~~~~qt~e~l~~~~~l~i~~i 186 (476)
.++|||| ++.|...+.. . +..+++++.|+|+.....- ..+ ....+..+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 9999999 4455443333 2 4567788888887542100 000 0002233444555667888 8
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcC-CCeeEEeeeccccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~ipvSa~~g~~i~~~~ 244 (476)
++|+||+|+... .. +.+..+.+.+++... ...+++++||++|.|+.++.
T Consensus 126 ilv~nK~Dl~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 175 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQ-------EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK 175 (190)
T ss_dssp EEEEECGGGCSC--HH-------HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHH
T ss_pred EEEeehHhccCc--HH-------HHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHH
Confidence 999999999432 11 223333344443200 02368999999999999863
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.59 E-value=2.9e-15 Score=147.63 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=98.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|.+|+|||||+++|.. +.... ...+.+.+.....+..++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT--NAFPG------------------------------EYIPTVFDNYSANVMVDG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH--SCCCC------------------------------SCCCCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCChHHHHHHHHh--CCCCc------------------------------ccCCcccceeEEEEEECC
Confidence 4458999999999999999999852 11110 011122222223344455
Q ss_pred e--EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHc--CCceEEEEEEccCCCC
Q 011837 123 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~--~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l--~i~~iIvviNK~Dl~~ 197 (476)
. .+.||||||+++|.......+..+|++++|+|++.... + .... ..+..+... ++| +++|+||+|+..
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---F---HHVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---H---HHHHHTHHHHHHHHCTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhhCCCCc-EEEEEEchhccc
Confidence 4 45699999999998888888899999999999987532 1 0111 122333333 677 899999999843
Q ss_pred cCccHHHHHH------HHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.....+.+.+ ..++...+.+..++ .+++++||++|.|+.++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTV 320 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHH
Confidence 2100001100 01233444444432 37999999999999985
No 164
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=1.6e-15 Score=155.82 Aligned_cols=146 Identities=19% Similarity=0.178 Sum_probs=90.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
+..++|+++|++|+|||||+++|+.....+. . ...|+|.+.....+..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------~------~~~gtT~d~~~~~i~~~g 271 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIV------------------------T------DLPGTTRDVVESQLVVGG 271 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCC------------------------S------CCTTCCHHHHHHEEEETT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------c------CCCCeeEEEEEEEEEECC
Confidence 3457899999999999999999975332111 1 123455555555667788
Q ss_pred eEEEEEeCCCCcCcHH--------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 123 TRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~--------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
..+.||||||+.++.. .+...+..+|++++|+|++.+.. .+..+.+..+ ...| +|+|+||+|
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l--~~~p-iivV~NK~D 341 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQV--KHRP-LILVMNKID 341 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHH--TTSC-EEEEEECTT
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhc--cCCc-EEEEEECCC
Confidence 9999999999876532 23345678999999999998642 2223333222 2355 889999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..... .. .++.+. ...+++++||++|.|++++.
T Consensus 342 l~~~~~----~~--------~~~~~~----~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 342 LVEKQL----IT--------SLEYPE----NITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp SSCGGG----ST--------TCCCCT----TCCCEEEEBTTTTBSHHHHH
T ss_pred CCcchh----hH--------HHHHhc----cCCcEEEEECCCCCCHHHHH
Confidence 954311 00 111111 24579999999999999854
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=8.7e-15 Score=146.05 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=95.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCe
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 123 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 123 (476)
....|+++|++|+|||||+++|....- ..+...+.|.+.....+..++.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEEECCE
Confidence 345699999999999999999842110 0111235566666667778888
Q ss_pred EEEEEeCCCCcCc--------HHHHhhhccccCEEEEEEECCCCc--cccccCCCCchHHHHHHHHHc---CCceEEEEE
Q 011837 124 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKTL---GVTKLLLVV 190 (476)
Q Consensus 124 ~~~liDtPGh~~f--------~~~~~~~~~~aD~avlVVda~~g~--~e~~~~~~~qt~e~l~~~~~l---~i~~iIvvi 190 (476)
.+.++||||+... ...+...+..+|.+++|+|+++.. .+ .+.......+..+ ++| +|+|.
T Consensus 227 ~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~ 299 (364)
T 2qtf_A 227 KIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTL 299 (364)
T ss_dssp EEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEE
T ss_pred EEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEE
Confidence 9999999997321 234455678999999999998753 11 1222222334443 566 88999
Q ss_pred EccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 191 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
||+|+.... . .+..+.+..+...++. ...+++|+||++|.|++++.
T Consensus 300 NK~Dl~~~~--~---~~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~ 345 (364)
T 2qtf_A 300 NKIDKINGD--L---YKKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLR 345 (364)
T ss_dssp ECGGGCCSC--H---HHHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHH
T ss_pred ECCCCCCch--H---HHHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHH
Confidence 999994321 1 1112222222233211 13578999999999999853
No 166
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=4.6e-15 Score=133.71 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=89.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE-----
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE----- 119 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~----- 119 (476)
.++|+++|.+|+|||||+++|........ .+....+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-----------------------------~~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-----------------------------GMQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-----------------------------CCcceeccEEeEEeeeccccCC
Confidence 36899999999999999999842100000 00011111222222221
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~ 197 (476)
.....+.+|||||+++|.......++.+|++++|+|.+.+.. .++ .....+..+.. .++| +++|.||+|+..
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EVD---AMKPWLFNIKARASSSP-VILVGTHLDVSD 126 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HHH---THHHHHHHHHHHCTTCE-EEEEEECGGGCC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HHH---HHHHHHHHHHhhCCCCc-EEEEEECCCccc
Confidence 135679999999998887655556778999999999987520 011 22233333332 2566 888999999932
Q ss_pred cCccHHHHHHH-HHHHHHHHHhccCCcCCCeeEEeeeccccc-ccccc
Q 011837 198 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~-~i~~~ 243 (476)
+...... .+....+.+..++. ...+++++||++|. |+.++
T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l 168 (184)
T 2zej_A 127 ----EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKL 168 (184)
T ss_dssp ----HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHH
Confidence 1122111 22223333333432 11248999999996 88875
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.57 E-value=3.3e-14 Score=136.44 Aligned_cols=119 Identities=12% Similarity=0.072 Sum_probs=76.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|++|+|||||+++|+...-. ......+.|.+.....+...
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~ 85 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVV------------------------------SISPFQSEGPRPVMVSRSRA 85 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCS------------------------------CCCSSSCCCSSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCcceeeEEEEEeeC
Confidence 345799999999999999999999632110 00112333444444556778
Q ss_pred CeEEEEEeCCCCcCcH---HHHhhh------ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC----CceEE
Q 011837 122 TTRFTILDAPGHKSYV---PNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG----VTKLL 187 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~---~~~~~~------~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~----i~~iI 187 (476)
+..++||||||+.+|. ...... ...+|++++|+|++...+ . ....+.+..+.. .+ .| +|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~----~--~~~~~~~~~l~~~~~~~~~~~-ii 158 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV----D--NLDKLVAKAITDSFGKGIWNK-AI 158 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC----C--HHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC----C--HHHHHHHHHHHHHhCcccccC-EE
Confidence 8999999999997763 222211 237999999998865322 1 223344444433 34 35 89
Q ss_pred EEEEccCCCC
Q 011837 188 LVVNKMDDHT 197 (476)
Q Consensus 188 vviNK~Dl~~ 197 (476)
+|+||+|+..
T Consensus 159 vV~nK~Dl~~ 168 (270)
T 1h65_A 159 VALTHAQFSP 168 (270)
T ss_dssp EEEECCSCCC
T ss_pred EEEECcccCC
Confidence 9999999953
No 168
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.55 E-value=3e-15 Score=147.97 Aligned_cols=152 Identities=18% Similarity=0.161 Sum_probs=94.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-e
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 123 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 123 (476)
..+|+++|.+|+|||||+++|......+ ......|.......+..++ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 4579999999999999999984211100 0112234444444556664 7
Q ss_pred EEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-----cCCceEEEEEE
Q 011837 124 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVN 191 (476)
Q Consensus 124 ~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-----l~i~~iIvviN 191 (476)
.+.|+||||+.+ +....++.+..+|++|+|+|++.......+ .+....+..+.. .++| +++|+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 899999999532 445556666789999999999752100000 122333344444 2566 789999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+... ++ .+..+.+.+.. ..+++++||++|.|++++..
T Consensus 283 K~Dl~~~---~e-------~~~~l~~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMPEA---AE-------NLEAFKEKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTSTTH---HH-------HHHHHHHHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCCCC---HH-------HHHHHHHHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 9999421 11 12222233221 15789999999999998643
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=2.5e-14 Score=132.09 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=89.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
....++|+++|.+|+|||||+++|+.....+.. +. ...|. +.....+..+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~------------------------~~----~~~g~--d~~~~~i~~~ 83 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS------------------------DC----EVLGE--DTYERTLMVD 83 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC------------------------C-------CCT--TEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC------------------------cC----Cccce--eeEEEEEEEC
Confidence 345689999999999999999998521111110 00 00111 1112223344
Q ss_pred C--eEEEEEeCCCCcCc-HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccC
Q 011837 122 T--TRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f-~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~D 194 (476)
+ ..+.++||+|.... ........+.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~D 156 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSD 156 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTT
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChH
Confidence 4 35678999998873 2222334578999999999876321 11 12222222222 2677 899999999
Q ss_pred CCCc-CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 195 DHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 195 l~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
+... .... + +...+.... +++++++||++|.|+.++++
T Consensus 157 L~~~r~v~~---~----e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 157 LVRCREVSV---S----EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp CGGGCCSCH---H----HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred HhcCceEeH---H----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 9421 1111 1 112222232 34799999999999999643
No 170
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.53 E-value=2.9e-14 Score=136.20 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=78.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
..+.++|+++|++|+|||||+++|+..... ......+.|.......+..+
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~ 82 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVV------------------------------RVSPFQAEGLRPVMVSRTMG 82 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCS------------------------------CCCSSCC-CCCCEEEEEEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCc------------------------------ccCCCCCcceeeEEEEEEEC
Confidence 346799999999999999999999642211 01113445666666677888
Q ss_pred CeEEEEEeCCCCcCcHHH-------Hhhhc--cccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cC---CceEEE
Q 011837 122 TTRFTILDAPGHKSYVPN-------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~-------~~~~~--~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~---i~~iIv 188 (476)
+..++|||||||.+|... +...+ ..+|++++|+|.+...+. ....+.+..+.. .+ ..++++
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD------ELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCC------HHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhchhhhcCEEE
Confidence 999999999999877322 11111 278999999988764321 222334444443 23 123889
Q ss_pred EEEccCCC
Q 011837 189 VVNKMDDH 196 (476)
Q Consensus 189 viNK~Dl~ 196 (476)
|+||+|+.
T Consensus 157 v~nK~Dl~ 164 (262)
T 3def_A 157 VLTHAQFS 164 (262)
T ss_dssp EEECTTCC
T ss_pred EEeCcccC
Confidence 99999994
No 171
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.52 E-value=8.6e-14 Score=138.98 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=94.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
....+|+++|++|+|||||+++|+.... ......+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-------------------------------EIASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-------------------------------EEECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCeeeceeEEEEEecC
Confidence 4568999999999999999999842110 000112233333444555667
Q ss_pred eEEEEEeCCCCcCcH--------HHHhhhc-cccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-c-CCceEEEEEE
Q 011837 123 TRFTILDAPGHKSYV--------PNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~f~--------~~~~~~~-~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l-~i~~iIvviN 191 (476)
..+.++||||+.++. ...+.++ ..+|.+++|+|++... +++. ....+.+..+.. . +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~-~~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPL-EEQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCH-HHHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCH-HHHHHHHHHHHHhcCCCC-EEEEEE
Confidence 889999999986542 1222233 4699999999987642 0110 011222333332 3 677 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+.. ...++ ++..+++.. ..+++++||++|+|++++.+
T Consensus 289 K~Dl~~----~~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVAD----EENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTCC----HHHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccCC----hHHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 999932 22222 233333332 35799999999999998643
No 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.50 E-value=8.8e-14 Score=126.30 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=87.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|.+|+|||||+++|+.....+.... ...|. +.....+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~--~~~~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGE--DTYERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCT--TEEEEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccce--eEEEEEEEECC
Confidence 3468999999999999999999864332221100 00111 11122233444
Q ss_pred e--EEEEEeCCCCcCc-HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q 011837 123 T--RFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 123 ~--~~~liDtPGh~~f-~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl 195 (476)
. .+.++||+|.... ........+.+|++++|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 3 5678999997652 1112234567999999999976321 11 12222222222 2677 8999999998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.... .-.. ++...+.... +++++++||++|.|+.++++
T Consensus 127 ~~~r--~v~~----~~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 127 VRXR--EVSV----SEGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGGC--CSCH----HHHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred hccc--cccH----HHHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 4211 0001 1111222222 34799999999999998643
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.50 E-value=1.9e-14 Score=151.53 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=94.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeee------e
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------R 115 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~------~ 115 (476)
....++|+++|.+|+|||||+++|.... .... .....|.++... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceEEEEeccccccc
Confidence 4567999999999999999999985211 1000 000111111110 0
Q ss_pred EEE--EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEE
Q 011837 116 AHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVN 191 (476)
Q Consensus 116 ~~~--~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~--i~~iIvviN 191 (476)
..+ ...+..+.++||||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|+|+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12357899999999999987766777889999999999764 24455555666654 77 889999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+.... +.. .+.+...+...+ .+++++||++|.|+.++..
T Consensus 159 K~Dl~~~~--~v~----~~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 159 KIDENPSY--NIE----QKKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CTTTCTTC--CCC----HHHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred CCCccccc--ccC----HHHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 99995321 101 133444444443 4699999999999998643
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=1.4e-13 Score=125.61 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
..++|+++|+.|+|||||+++|+...-. .+....++.+.....+..++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------------------------------LESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-------------------------------C---CCCSCEEEEEEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-------------------------------CCCCCccceeEEEEEEEECCE
Confidence 3589999999999999999998532100 00011112222233444555
Q ss_pred -eEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCCc
Q 011837 123 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 -~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~~ 198 (476)
..+.++|+||++.|..........+|++++|+|...... + ......+..+.. .+.| +++++||+|+...
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 457889999999887655556678999999999886431 1 122222222332 2455 8899999999421
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
..... ++...+.... .+.++.+||+++.|+.++.+
T Consensus 126 --~~~~~----~~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 --RAVPT----DEARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp --CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred --cCcCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11111 1233344443 35789999999999998643
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.47 E-value=2.5e-13 Score=124.65 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=92.5
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
.-.+..+|+++|++|+|||||+++|+. ..... ......|.+..... +..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g---~~~~~--------------------------~~~~~~G~~~~~~~--~~~ 70 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN---QKSLA--------------------------RTSKTPGRTQLINL--FEV 70 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC---C---------------------------------------CCEEE--EEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC---CCccc--------------------------cccCCCccceeeEE--EEe
Confidence 344557999999999999999998842 11000 00112333333222 223
Q ss_pred CCeEEEEEeCCCCcC----------cHHH---HhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011837 121 ETTRFTILDAPGHKS----------YVPN---MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~----------f~~~---~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI 187 (476)
.+ .+.++||||+.. |... .......+|.+++++|+..+.. ....+....+...++| ++
T Consensus 71 ~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~ 141 (210)
T 1pui_A 71 AD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VL 141 (210)
T ss_dssp ET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EE
T ss_pred cC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eE
Confidence 33 688999999853 2222 2222357899999999987642 1223344555667888 77
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
++.||+|+.. ....+.....+..++..++. .+.++|+||+++.|+.++
T Consensus 142 ~v~nK~D~~s----~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 142 VLLTKADKLA----SGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp EEEECGGGSC----HHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHH
T ss_pred EEEecccCCC----chhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHH
Confidence 8899999832 22222223445555554432 367899999999999985
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.47 E-value=1.1e-13 Score=134.48 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=66.1
Q ss_pred CeEEEEEeCCCCc-------------CcHHHHhhhccccCEEE-EEEECCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 011837 122 TTRFTILDAPGHK-------------SYVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 186 (476)
Q Consensus 122 ~~~~~liDtPGh~-------------~f~~~~~~~~~~aD~av-lVVda~~g~~e~~~~~~~qt~-e~l~~~~~l~i~~i 186 (476)
...++||||||+. .+...+..++..+|.++ +|+|++.+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999964 23444555677888776 6899988652 2332 344444445777 8
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
++|+||+|+.... .. ..+.+...+..+. ....+++++||++|.|+.++.
T Consensus 196 i~V~NK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 196 IGVITKLDLMDEG--TD----ARDVLENKLLPLR---RGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp EEEEECGGGSCTT--CC----CHHHHTTCSSCCT---TCEEECCCCCCBCTTSCBCHH
T ss_pred EEEEEccccCCCC--ch----HHHHHhCCcCcCC---CCcEEEECCChhhccccccHH
Confidence 8999999995432 10 1111111111110 013578999999999998864
No 177
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.46 E-value=1.5e-13 Score=133.64 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEEE
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 126 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ 126 (476)
+|+++|..++|||||+.++. .+.... .....+.|+......+. ...++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~--~~~~~~----------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVF--HNMQPL----------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHH--SCCCSG----------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHH--cCCCCC----------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 58899999999999998652 111100 00112334433333332 347899
Q ss_pred EEeCCCCcCcHH---HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH--cCCceEEEEEEccCCCCcCcc
Q 011837 127 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 127 liDtPGh~~f~~---~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~--l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+|||||+++|.. ......+.++++|+|+|+++. +...+ ....+.+..+.. -++| ++++.||+|+...+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~---~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R 124 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAI---TNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFK 124 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHH---HHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHH---HHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhh
Confidence 999999999964 345567899999999999876 32111 011222222222 3576 8899999999432111
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+..+++..+..+.+...++. ..+++|+.+||++ .|+.+..
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAF 165 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAF 165 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHH
T ss_pred hhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHH
Confidence 111233444333333333221 1257999999997 5887753
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.2e-13 Score=124.91 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=70.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|+.|+|||||+++|+...- .. . ......+++.+ ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~--~~-~-------------------------~~~~~~~~~~~-------~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP-T-------------------------VVSQEPLSAAD-------YDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC--C--------------------------------------C-------CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC--Cc-c-------------------------cccCCCceeee-------ecC
Confidence 4568999999999999999999953211 00 0 00001111111 145
Q ss_pred eEEEEEeCCCCcCcHHHHhhhccc----cCEEEEEEECCCCccccccCCCCchHHHHHHHHH-------cCCceEEEEEE
Q 011837 123 TRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 191 (476)
Q Consensus 123 ~~~~liDtPGh~~f~~~~~~~~~~----aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-------l~i~~iIvviN 191 (476)
..+.||||||+.+|...+...+.. +|++|+|+|++.... .+ ....+.+..+.. .++| +++|+|
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 164 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KL---TTTAEFLVDILSITESSCENGID-ILIACN 164 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHH--HH---HHHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCch--hH---HHHHHHHHHHHhhhhhccccCCC-EEEEEE
Confidence 778999999999886655555544 899999999982210 01 112222222211 2677 889999
Q ss_pred ccCCCCcC
Q 011837 192 KMDDHTVN 199 (476)
Q Consensus 192 K~Dl~~~~ 199 (476)
|+|+....
T Consensus 165 K~Dl~~~~ 172 (193)
T 2ged_A 165 KSELFTAR 172 (193)
T ss_dssp CTTSTTCC
T ss_pred chHhcCCC
Confidence 99996543
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=9.7e-14 Score=136.03 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCCcC-------------cHHHHhhhccccCEEEEEEEC-CCCccccccCCCCchHHHHHHHHHcCCceE
Q 011837 121 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQTREHVMLAKTLGVTKL 186 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-------------f~~~~~~~~~~aD~avlVVda-~~g~~e~~~~~~~qt~e~l~~~~~l~i~~i 186 (476)
....++||||||+.+ +...+..++..+|++++|+|+ +.+.. ..+..+.+..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~------~~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA------NSDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST------TCSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh------hhHHHHHHHHhCCCCCc-E
Confidence 457899999999764 455566678899999999997 44432 01223455555556787 8
Q ss_pred EEEEEccCCCC
Q 011837 187 LLVVNKMDDHT 197 (476)
Q Consensus 187 IvviNK~Dl~~ 197 (476)
|+|+||+|+..
T Consensus 202 i~v~NK~Dl~~ 212 (315)
T 1jwy_B 202 IGVITKLDLMD 212 (315)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEcCcccCC
Confidence 89999999954
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=2.9e-13 Score=136.54 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.4
Q ss_pred eEEEEEeCCCCcCc-------HHHHhhhccccCEEEEEEECCCC
Q 011837 123 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 159 (476)
Q Consensus 123 ~~~~liDtPGh~~f-------~~~~~~~~~~aD~avlVVda~~g 159 (476)
..+.|+||||+.+. ....+..++.+|++++|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999997542 12223456899999999999875
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=137.78 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=74.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|++|+|||||+++|+.. +...... ......+..++++++.....+...+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~ 92 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERG 92 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----C
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCC
Confidence 34589999999999999999998421 2111110 0000111123334433333334444
Q ss_pred --eEEEEEeCCCC-------cCcHHH----------Hhhhcc----------ccCEEEEEEECCCCccccccCCCCchH-
Q 011837 123 --TRFTILDAPGH-------KSYVPN----------MISGAS----------QADIGVLVISARKGEFETGFEKGGQTR- 172 (476)
Q Consensus 123 --~~~~liDtPGh-------~~f~~~----------~~~~~~----------~aD~avlVVda~~g~~e~~~~~~~qt~- 172 (476)
..+++|||||+ +.|... .+.... .+|+++++|++....+ .+..
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l-------~~~d~ 165 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL-------KPLDV 165 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSC-------CHHHH
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCc-------chhHH
Confidence 37899999999 333221 111111 2357888888643322 1222
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 173 e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.+..+ ..++| +|+|+||+|+.. .......++.+..+++..+ ++++++||++|.| .+.
T Consensus 166 ~~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 166 AFMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHCC------CCEEeCCCcCCCc-chh
Confidence 222222 24577 899999999942 3344455566666665543 5789999999998 543
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.42 E-value=1e-12 Score=119.13 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=94.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
...++|+++|+.|+|||||+++|....- .......++.+.....+..++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------------------------NLESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCSCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceEEEEEEEEECC
Confidence 3468999999999999999999853110 001112233333334455555
Q ss_pred e--EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q 011837 123 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~--~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~---l~i~~iIvviNK~Dl~~ 197 (476)
. .+.++|+||+++|...+....+.+|++++|+|...... + ......+..+.. .+.| +++++||+|+..
T Consensus 76 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4 45679999999887666666678899999999876421 1 112222222222 2455 889999999842
Q ss_pred cCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 198 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
. .+... +....+.... .+.++.+||+++.|+.++
T Consensus 149 ~--~~~~~----~~a~~l~~~~------~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 149 L--RAVPT----DEARAFAEKN------GLSFIETSALDSTNVEAA 182 (191)
T ss_dssp G--CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHH
T ss_pred c--cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHH
Confidence 1 11111 2233334433 357899999999999885
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.40 E-value=8.7e-13 Score=142.39 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCcC---cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHH-HHHHcCCceEEEEEEccCCCCc
Q 011837 123 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 123 ~~~~liDtPGh~~---f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~-~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
..++||||||+.+ ....+...+..+|++|+|+|++.+.. ....+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999654 34555567788999999999988642 22333332 33445777 8899999998432
Q ss_pred C-ccH---HHHHHHHHHHH----HHHHhc-c---CCcCCCeeEEeeecc--------------ccccccccc
Q 011837 199 N-WSK---ERYDEIESKMT----PFLKAS-G---YNVKKDVQFLPISGL--------------MGLNMKTRV 244 (476)
Q Consensus 199 ~-~~~---~~~~~~~~~l~----~~l~~~-~---~~~~~~~~~ipvSa~--------------~g~~i~~~~ 244 (476)
. .+. +.+++..+.+. ..+... + +. ....+++++||+ +|.|+.++.
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~ 316 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRLKNPQADLDGTGFPKFM 316 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhccCchhhhhccCHHHHH
Confidence 1 001 12333333332 223221 1 11 013479999999 888888753
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.39 E-value=6.8e-13 Score=132.31 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=69.5
Q ss_pred EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCc
Q 011837 119 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 198 (476)
Q Consensus 119 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~ 198 (476)
...++.+.||||||... .....+..+|++++|+|+..+.....+ + ...+.+| .++|+||+|+.
T Consensus 168 ~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l------~-----~~~~~~p-~ivVlNK~Dl~-- 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI------K-----KGVLELA-DIVVVNKADGE-- 230 (355)
T ss_dssp HHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC------C-----TTSGGGC-SEEEEECCCGG--
T ss_pred hhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH------H-----HhHhhcC-CEEEEECCCCc--
Confidence 34678999999999543 233335889999999998765421111 1 0113356 67899999983
Q ss_pred CccHHHHHHHHHHHHHHHHhccCCcC-CCeeEEeeecccccccccccc
Q 011837 199 NWSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.....+...+++...+..++.... -..+++++||++|.|++++.+
T Consensus 231 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 --HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp --GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 233455555666666554421100 135899999999999998643
No 185
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=129.50 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=49.4
Q ss_pred ccCEEEEEEECCCC---ccccccCCCCchHHHHHHHH----HcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHh
Q 011837 146 QADIGVLVISARKG---EFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 218 (476)
Q Consensus 146 ~aD~avlVVda~~g---~~e~~~~~~~qt~e~l~~~~----~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~ 218 (476)
.+|++|+|+|+++. .+ + ...+.+..+. ..++| +|+|.||+|+.. +... ++...+.+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~----~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~----~~~v----~~~~~~~~~ 225 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF----D---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV----ERYI----RDAHTFALS 225 (255)
T ss_dssp ECCEEEEEEECBC----CH----H---HHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC----HHHH----HHHHHHHHT
T ss_pred cCCEEEEEEECCCCchhhH----H---HHHHHHHHHHHHhccCCCC-EEEEEEcccccc----cHHH----HHHHHHHHh
Confidence 69999999999874 22 1 2222222222 24677 899999999832 2222 344444433
Q ss_pred ccCCcCCCeeEEeeeccccccccccc
Q 011837 219 SGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 219 ~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. ..++++++||++|.|+.++.
T Consensus 226 ~-----~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 226 K-----KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp S-----SSCCEEECBTTTTBSHHHHH
T ss_pred c-----CCCeEEEEECCCCCCHHHHH
Confidence 2 13579999999999999853
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.37 E-value=9.6e-13 Score=130.44 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=67.0
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
+.++.++|+||||+.++...+ ...+|++++|+|+..+.. + +.... ...++| .++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 567899999999988765443 578999999999976531 1 11111 112456 678999999932
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCcC-CCeeEEeeecccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYNVK-KDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~ipvSa~~g~~i~~~~~ 245 (476)
...+....+++...+..++.... -..+++|+||++|.|+.++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 23344444555555544321000 024789999999999998643
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.29 E-value=4.9e-12 Score=127.84 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=88.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-e
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 123 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~-~ 123 (476)
...|+++|++|||||||+++|......+ .+ ....|+......+..++ .
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i-------------------------~~------~~ftTl~p~~G~V~~~~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKI-------------------------AP------YPFTTLSPNLGVVEVSEEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEE-------------------------CC------CTTCSSCCEEEEEECSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccc-------------------------cC------cccceecceeeEEEecCcc
Confidence 3468999999999999999984221100 00 01112222223344454 7
Q ss_pred EEEEEeCCCCcCc-------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCC
Q 011837 124 RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 195 (476)
Q Consensus 124 ~~~liDtPGh~~f-------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl 195 (476)
.++++|+||+.+. .......+..+|.+++++|+....++ .++ .-.++...++.. ...| .|+++||+|+
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~aL~~~P-~ILVlNKlDl 281 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPALLRRP-SLVALNKVDL 281 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHHHHHSC-EEEEEECCTT
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHHhhcCC-EEEEEECCCh
Confidence 8999999997432 22334445679999999999721110 011 001112222222 3567 5678899998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
.. .+.+ +.+...++.. ..+++++||+++.|+.++.+
T Consensus 282 --~~--~~~~----~~l~~~l~~~------g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 282 --LE--EEAV----KALADALARE------GLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp --SC--HHHH----HHHHHHHHTT------TSCEEECCTTTCTTHHHHHH
T ss_pred --hh--HHHH----HHHHHHHHhc------CCeEEEEECCCccCHHHHHH
Confidence 32 1222 3344444433 34799999999999999644
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=122.89 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=59.8
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
..+..+.|+||||...-. ......+|++++|+|+..+.. .+ .+.. ..+..| .++|+||+|+. +
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl~--~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDGD--L 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGG--G
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecCC--C
Confidence 367889999999953221 233568999999999987531 11 1111 224667 57899999993 2
Q ss_pred ccHHHHHHHHHHHHHHHHhccCC-cCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
..........+...++..... .....+++++||++|.|+.++.
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~ 270 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMW 270 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence 222222333444333321100 0013579999999999999854
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=6.4e-12 Score=131.95 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCcC-----------cHHHHhhhccccCEEEEEEECCC-CccccccCCCCchHHHHHHHHHcCCceEEEEE
Q 011837 123 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 190 (476)
Q Consensus 123 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~avlVVda~~-g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvvi 190 (476)
..++||||||+.+ |...+...+..+|++|+|+|++. +.. .+..+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4689999999876 66677777889999999999987 332 3556666666666777 88999
Q ss_pred EccCCCCcCccHHHHHHHHHHHH
Q 011837 191 NKMDDHTVNWSKERYDEIESKMT 213 (476)
Q Consensus 191 NK~Dl~~~~~~~~~~~~~~~~l~ 213 (476)
||+|+.. ++.+.++...+.
T Consensus 226 NK~Dl~~----~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE----TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC----HHHHHHHHHHHH
T ss_pred ECCCccC----HHHHHHHHHHhh
Confidence 9999932 344555555443
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.28 E-value=6.3e-13 Score=123.14 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=88.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEe-eee---EE
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGR---AH 117 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~-~~~---~~ 117 (476)
.+..++|+++|++|+|||||+++|+........-..-. .+.+. + .|... .+..|.++. ... ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~-----~d~~~-~------~d~~~-~~~~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML-----GDVVS-K------ADYER-VRRFGIKAEAISTGKECH 93 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE-----CSCCC-H------HHHHH-HHTTTCEEEECCCTTCSS
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe-----cCCCC-c------hhHHH-HHhCCCcEEEecCCceee
Confidence 34568999999999999999999986542110000000 00000 0 00000 001122211 100 01
Q ss_pred E----------EeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEE
Q 011837 118 F----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 187 (476)
Q Consensus 118 ~----------~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iI 187 (476)
+ .+.+..+.+|||||+..-- .. .-..++.+++|+|+..+. .... ......+.| ++
T Consensus 94 ~~~~~~~~~~~~~~~~d~iiidt~G~~~~~-~~--~~~~~~~~i~vvd~~~~~--------~~~~---~~~~~~~~~-~i 158 (221)
T 2wsm_A 94 LDAHMIYHRLKKFSDCDLLLIENVGNLICP-VD--FDLGENYRVVMVSVTEGD--------DVVE---KHPEIFRVA-DL 158 (221)
T ss_dssp CCHHHHHTTGGGGTTCSEEEEEEEEBSSGG-GG--CCCSCSEEEEEEEGGGCT--------THHH---HCHHHHHTC-SE
T ss_pred cccHHHHHHHHhcCCCCEEEEeCCCCCCCC-ch--hccccCcEEEEEeCCCcc--------hhhh---hhhhhhhcC-CE
Confidence 1 2346789999999952110 00 012468899999998763 1111 222335677 67
Q ss_pred EEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 188 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 188 vviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+|+||+|+... ....++++.+.+ +..+ ...+++++||++|.|+.++.
T Consensus 159 iv~NK~Dl~~~--~~~~~~~~~~~~----~~~~----~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 159 IVINKVALAEA--VGADVEKMKADA----KLIN----PRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp EEEECGGGHHH--HTCCHHHHHHHH----HHHC----TTSEEEECBTTTTBTHHHHH
T ss_pred EEEecccCCcc--hhhHHHHHHHHH----HHhC----CCCeEEEeecCCCCCHHHHH
Confidence 89999998321 001233333333 3322 24589999999999999853
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.26 E-value=8.1e-12 Score=124.78 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=65.1
Q ss_pred CeEEEEEeCCCCcCc-------------HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEE
Q 011837 122 TTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~f-------------~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIv 188 (476)
...++||||||..++ ...+...+..+|++|||+|+...... .....+.+..+...+.| +|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~-----~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG-----GCHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC-----CHHHHHHHHHhcccCCC-EEE
Confidence 567999999998776 44555667899999999987543210 02223333333345677 889
Q ss_pred EEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 189 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 189 viNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+||+|+.... ... .+. +...... ...+++++|+.++.++.+.
T Consensus 209 V~nK~Dl~~~~--~~~----~~~----~~~~~~~--~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 209 VLTKIDLMDKG--TDA----VEI----LEGRSFK--LKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp EEECGGGCCTT--CCS----HHH----HTTSSSC--CSSCCEEECCCCHHHHHTT
T ss_pred EEeCCccCCCc--ccH----HHH----HcCcccc--ccCCeEEEEECChHHhccC
Confidence 99999995322 111 111 2211111 2457899999999888654
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.24 E-value=1.3e-11 Score=122.94 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=60.6
Q ss_pred CeEEEEEeCCCCcC-------------cHHHHhhhcccc-CEEEEEEECCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 011837 122 TTRFTILDAPGHKS-------------YVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 186 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------------f~~~~~~~~~~a-D~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l~i~~i 186 (476)
...++||||||..+ +...+...+..+ +++++|+|++.+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999532 233333445444 55666777776542 2322 244444445777 8
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
|+|+||+|+.... .. .. +.+.... ..+. ....+++++||++|.|+.++.
T Consensus 201 i~V~NK~Dl~~~~--~~-~~---~~~~~~~--~~l~-~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 201 IGVITKLDLMDEG--TD-AR---DVLENKL--LPLR-RGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp EEEEECGGGSCTT--CC-CH---HHHTTCS--SCCT-TCEEECCCCCHHHHHTTCCHH
T ss_pred EEEeccccccCcc--hh-HH---HHHhCCc--cccc-CCceEEEeCCcccccccccHH
Confidence 8999999995332 10 11 1111100 0100 112478999999999998754
No 193
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.20 E-value=3.5e-11 Score=129.23 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=66.4
Q ss_pred CeEEEEEeCCCCcC-------------cHHHHhhhc-cccCEEEEEEECCCCccccccCCCCchH-HHHHHHHHcCCceE
Q 011837 122 TTRFTILDAPGHKS-------------YVPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 186 (476)
Q Consensus 122 ~~~~~liDtPGh~~-------------f~~~~~~~~-~~aD~avlVVda~~g~~e~~~~~~~qt~-e~l~~~~~l~i~~i 186 (476)
...++|+||||... +...+...+ ..+|++++|+|++.+.. .+.. +.+..+...+.| +
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~l~ll~~L~~~g~p-v 220 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 220 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHHHHHHHHHCTTCSS-E
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHHHHHHHHHHhcCCC-E
Confidence 45799999999433 222233333 47899999999998753 2333 455556666787 8
Q ss_pred EEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 187 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 187 IvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
|+|+||+|+...+.. ...+.. . +...+. ....+++++||++|.|+.++.+
T Consensus 221 IlVlNKiDlv~~~~~---~~~il~---~--~~~~l~-lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 221 IGVITKLDLMDEGTD---ARDVLE---N--KLLPLR-RGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp EEEEECTTSSCTTCC---SHHHHT---T--CSSCCS-SCEEECCCCCCEESSSSEEHHH
T ss_pred EEEEeCcccCCcchh---hHHHHH---H--Hhhhhh-ccCCceEEecccccccchhHHH
Confidence 899999999543211 111110 0 000000 1235789999999999988644
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.14 E-value=1.1e-10 Score=110.81 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=62.6
Q ss_pred CeEEEEEeCCCCcCcHH------HHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVP------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~------~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.||||||..++.. .+...+.. +++++|+|+........+. .............++| +++|+||+|+
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~--~~~~~~~~~~~~~~~p-~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYC--FVRFFALLIDLRLGAT-TIPALNKVDL 183 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHH--HHHHHHHHHHHHHTSC-EEEEECCGGG
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHH--HHHHHHHHHhcccCCC-eEEEEecccc
Confidence 36799999999877632 23345566 8999999987543110000 0000011223345787 7899999998
Q ss_pred CCcCccHHHHHHHHH---HHHHH---------------------HHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTVNWSKERYDEIES---KMTPF---------------------LKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~---~l~~~---------------------l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... ...+++.+ ++..+ ++.++. ..+++++||++|.|++++
T Consensus 184 ~~~----~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 184 LSE----EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp CCH----HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHH
T ss_pred ccc----ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHH
Confidence 321 11222222 11111 223221 247899999999999985
No 195
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.13 E-value=4e-10 Score=90.66 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=69.9
Q ss_pred CCCCeEEEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCC-ceEEEEEEEECCeeeeecCCCCeEEEEEeccCccCc
Q 011837 271 PNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 347 (476)
Q Consensus 271 ~~~p~~~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i 347 (476)
...|.++.|...+ -. |+++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.+||.|+++++|++. ++
T Consensus 31 ~~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred ecCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 3457777777733 22 8899999999999999999 888 799999999999999999999999999999877 89
Q ss_pred eeeeEEec
Q 011837 348 LSGFVLSS 355 (476)
Q Consensus 348 ~~G~vl~~ 355 (476)
++|++|..
T Consensus 106 ~~GdVLyv 113 (116)
T 1xe1_A 106 KKGDVLEI 113 (116)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99999854
No 196
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.11 E-value=9.9e-11 Score=116.47 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=81.5
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEe
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 120 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 120 (476)
......+|+++|.+|+|||||+++|..... ......+.|++.....+.+
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-------------------------------~v~~~pftT~~~~~g~~~~ 116 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTES-------------------------------EAAEYEFTTLVTVPGVIRY 116 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCC-------------------------------CGGGTCSSCCCEEEEEEEE
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCC-------------------------------cccCCCCceeeeeeEEEEe
Confidence 344567999999999999999999943211 1112356777877788889
Q ss_pred CCeEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-----CCceEEE
Q 011837 121 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLL 188 (476)
Q Consensus 121 ~~~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-----~i~~iIv 188 (476)
.+.++.|+||||..+ ....++..++.||++++|||+.+... +.......+... ..| .++
T Consensus 117 ~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL~~~~~~l~~k~-~~i 187 (376)
T 4a9a_A 117 KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKELEGVGIRLNKTP-PDI 187 (376)
T ss_dssp TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHHHHTTEEETCCC-CCE
T ss_pred CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHHHHhhHhhccCC-hhh
Confidence 999999999999432 34556677889999999999987531 222222233333 234 568
Q ss_pred EEEccCCC
Q 011837 189 VVNKMDDH 196 (476)
Q Consensus 189 viNK~Dl~ 196 (476)
++||+|..
T Consensus 188 ~~nK~d~~ 195 (376)
T 4a9a_A 188 LIKKKEKG 195 (376)
T ss_dssp EEEECSSS
T ss_pred hhhHhhhh
Confidence 99999973
No 197
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.10 E-value=7.7e-10 Score=109.57 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=83.7
Q ss_pred ccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCcc---ccc-cCCCCchHHHHHHHHH---
Q 011837 108 GKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF---ETG-FEKGGQTREHVMLAKT--- 180 (476)
Q Consensus 108 g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~---e~~-~~~~~qt~e~l~~~~~--- 180 (476)
..|+......+..++..+.+|||+|++.|.+.+......++++|+|+|.++-.. |.. .+......+.+..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 344444556677788999999999999999999999999999999999886210 000 0000122223322222
Q ss_pred -cCCceEEEEEEccCCCCcC------------cc-HHHHHHHHHHHHHHHHhccCC-cCCCeeEEeeeccccccccccc
Q 011837 181 -LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 181 -l~i~~iIvviNK~Dl~~~~------------~~-~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.++| +|++.||+|+.... +. ....++..+.+...+..+... ....+.++.+||++|.|+.+++
T Consensus 258 ~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 258 FTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 2566 99999999983100 00 011233333333333333211 1235789999999999999863
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=5e-10 Score=110.79 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=54.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC---
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 122 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~--- 122 (476)
.+|+++|.+|+|||||+++|.... .. .....+.|++.....+..++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~------------------------------v~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IE------------------------------AANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Cc------------------------------ccCCCCceECceEEEEecCCccc
Confidence 589999999999999999995321 00 00112223333222233332
Q ss_pred --------------eEEEEEeCCCCcCcHH-------HHhhhccccCEEEEEEECCC
Q 011837 123 --------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 --------------~~~~liDtPGh~~f~~-------~~~~~~~~aD~avlVVda~~ 158 (476)
..+.|+||||+.++.. ..+..++.+|++++|+|+.+
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999987642 23445689999999999986
No 199
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.07 E-value=9.3e-10 Score=109.36 Aligned_cols=134 Identities=11% Similarity=0.150 Sum_probs=73.6
Q ss_pred EEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCc---cccc-cCCCCchHHHHHHHHH----c
Q 011837 110 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT----L 181 (476)
Q Consensus 110 ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~---~e~~-~~~~~qt~e~l~~~~~----l 181 (476)
|+......+..++..+.+|||+|++.|.+.+......++++|+|+|.+.-. .|.. .+........+..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 444444567778899999999999999999999999999999999988621 0000 0000122222222221 2
Q ss_pred CCceEEEEEEccCCCCc------------Ccc--HHHHHHHHHHHHHHHHhccCCc-CCCeeEEeeeccccccccccc
Q 011837 182 GVTKLLLVVNKMDDHTV------------NWS--KERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 182 ~i~~iIvviNK~Dl~~~------------~~~--~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ipvSa~~g~~i~~~~ 244 (476)
++| +|++.||+|+... +|. ...+++..+.+...+..+.-.. ...+.++++||++|.|+.+++
T Consensus 268 ~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 268 NVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp TSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred CCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 566 9999999998410 000 0112333333322222221110 124678999999999999864
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.03 E-value=9.4e-10 Score=106.87 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=72.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC--
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 121 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~-- 121 (476)
-..+|+++|+.|+|||||+++|... +.....++. .+. .....++........+...
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~-~~~~~~gi~-------------------~~g--~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT-DLYPERVIS-------------------GAA--EKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC-CccCCCCcc-------------------cCC--cccCCcceEeeEEEEecCCCc
Confidence 4578999999999999999997421 111100000 000 0000001111111112212
Q ss_pred CeEEEEEeCCCC-------cCcHHH----------Hhhhcc----------ccCEEEEEEECCCCccccccCCCCchHHH
Q 011837 122 TTRFTILDAPGH-------KSYVPN----------MISGAS----------QADIGVLVISARKGEFETGFEKGGQTREH 174 (476)
Q Consensus 122 ~~~~~liDtPGh-------~~f~~~----------~~~~~~----------~aD~avlVVda~~g~~e~~~~~~~qt~e~ 174 (476)
...++++||||. +.|... ....++ .+++++++++++.+.+ + ....+.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~L----d--~~~~~~ 148 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL----K--PLDVAF 148 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSC----C--HHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCC----C--HHHHHH
Confidence 357899999998 433221 122221 2345666666544311 1 233333
Q ss_pred HHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 175 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 175 l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..+. .+++ +++|+||.|+.. +......++++..+++..+ ++++++||++| |+++.+
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~~----~~e~~~~~~~~~~~~~~~~------~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGSC----HHHHHHHHHHHHHHHHHTT------CCCCCCC----------C
T ss_pred HHHHH-hcCC-EEEEEEeCCCCC----HHHHHHHHHHHHHHHHHcC------CeEEecCCccc-cccHHH
Confidence 33322 2455 889999999832 2334445566677777654 46899999999 998864
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.02 E-value=9.4e-10 Score=109.43 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCcCc-------HHHHhhhccccCEEEEEEECCC
Q 011837 122 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 ~~~~~liDtPGh~~f-------~~~~~~~~~~aD~avlVVda~~ 158 (476)
...+.|+||||..++ .......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998765 2345566789999999999986
No 202
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.99 E-value=2.1e-09 Score=104.93 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=85.4
Q ss_pred cccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECC-------CCccccccCCCCchHHHHHHHH
Q 011837 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLAK 179 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~-------~g~~e~~~~~~~qt~e~l~~~~ 179 (476)
+..|+-.....+..++..+.+|||+|++.|.+.+....+.++++|+|+|.+ +... .+....+...+..+.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~---~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN---ENRMEESKALFRTII 227 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTT---SBHHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccccc---HhHHHHHHHHHHHHh
Confidence 444555556677888999999999999999999999999999999999875 2110 000011222222222
Q ss_pred H----cCCceEEEEEEccCCCCcC------------cc--HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccc
Q 011837 180 T----LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 241 (476)
Q Consensus 180 ~----l~i~~iIvviNK~Dl~~~~------------~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~ 241 (476)
. .++| +|++.||+|+.... |. ...+++..+-+...+....-.....+.+..+||+++.|+.
T Consensus 228 ~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 TYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 1 2566 89999999984210 00 0123444444444444443222345778899999999999
Q ss_pred ccc
Q 011837 242 TRV 244 (476)
Q Consensus 242 ~~~ 244 (476)
..+
T Consensus 307 ~vF 309 (327)
T 3ohm_A 307 FVF 309 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=110.49 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 122 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 122 (476)
.-.++|+++|+.|+|||||++.|+...-. ... .+... .+ ....+........+...+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~-~~~-----------~~~~~------~~-----~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLY-SPE-----------YPGPS------HR-----IKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCC-CCC-----------CCSCC----------------CCEEEEEECC-----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCC-CCC-----------CCCcc------cC-----CccceeeeeEEEEEecCC
Confidence 33578899999999999999998432110 000 00000 00 000111111111112122
Q ss_pred --eEEEEEeCCCCcCcHH------HHh------------------hh-ccc--cCEEEEEEECC-CCccccccCCCCchH
Q 011837 123 --TRFTILDAPGHKSYVP------NMI------------------SG-ASQ--ADIGVLVISAR-KGEFETGFEKGGQTR 172 (476)
Q Consensus 123 --~~~~liDtPGh~~f~~------~~~------------------~~-~~~--aD~avlVVda~-~g~~e~~~~~~~qt~ 172 (476)
..++++|+||..++.. .+. ++ +.. +|++|++++++ .+.. +...
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~-------~~d~ 158 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-------PLDI 158 (418)
T ss_dssp -CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC-------HHHH
T ss_pred cccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC-------HHHH
Confidence 4689999999876532 110 11 223 34566666665 4432 2333
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 173 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 173 e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+.+..+. .+++ +|+|+||+|+. ....+...++.+...+...+ ++++.+|+.++.|+.+.
T Consensus 159 ~~lk~L~-~~v~-iIlVinK~Dll----~~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 159 EFMKRLH-EKVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHHT-TTSE-EEEEEESTTSS----CHHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHHHh-ccCc-EEEEEEcccCc----cHHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 4444443 3676 89999999983 24456666677777777654 46889999999888763
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=4.4e-09 Score=103.71 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=59.2
Q ss_pred eCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcC
Q 011837 120 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 199 (476)
Q Consensus 120 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~ 199 (476)
..+..+.|+||||..+-.. .....+|++++|+|+..+.. .. ..++.+ ..++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~---~i~~~i-----~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQ---GIKKGI-----FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTTH-----HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HH---HHHHHH-----hccc-cEEEEEchhccCc-
Confidence 4678999999999643211 22468999999999865421 00 010000 1224 3567899997321
Q ss_pred ccHHHHHHHHHHHHHHHHhccCC-cCCCeeEEeeeccccccccccc
Q 011837 200 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
........+.+...+....-. .....+++++||++|.|++++.
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~ 252 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLW 252 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence 122223334444333322200 0002478999999999998854
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.95 E-value=6.5e-10 Score=103.00 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=55.8
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 201 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~ 201 (476)
+..+.++|++|.-... .+.-...+..+.|+|+..+.. ... .. ....+.| .++|+||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~-------~~~-~~---~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD-------TIE-KH---PGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT-------TTT-TC---HHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh-------hHh-hh---hhHhhcC-CEEEEeccccCch--h
Confidence 3478999999942111 011134577788999755421 011 01 1224677 6789999998321 0
Q ss_pred HHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 202 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..+++ +...++.++ ...+++++||++|.|+.++.
T Consensus 181 ~~~~~~----~~~~~~~~~----~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 181 GADIKK----MENDAKRIN----PDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp TCCHHH----HHHHHHHHC----TTSEEEECCTTTCTTHHHHH
T ss_pred HHHHHH----HHHHHHHhC----CCCeEEEEEecCCCCHHHHH
Confidence 011222 333333332 24589999999999999853
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.93 E-value=6.4e-09 Score=101.91 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=83.5
Q ss_pred cccEEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCC---ccccc-cCCCCchHHHHHHHHH--
Q 011837 107 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETG-FEKGGQTREHVMLAKT-- 180 (476)
Q Consensus 107 ~g~ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g---~~e~~-~~~~~qt~e~l~~~~~-- 180 (476)
+..|+-.....+...+..+.+|||+|++.|.+.+....+.++++|+|+|.++- ..|.. .+........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 44455556667778889999999999999999999999999999999998720 00000 0000112222222222
Q ss_pred --cCCceEEEEEEccCCCCc------------Ccc-HHHHHHHHHHHHHHH------HhccCCcC-----------CCee
Q 011837 181 --LGVTKLLLVVNKMDDHTV------------NWS-KERYDEIESKMTPFL------KASGYNVK-----------KDVQ 228 (476)
Q Consensus 181 --l~i~~iIvviNK~Dl~~~------------~~~-~~~~~~~~~~l~~~l------~~~~~~~~-----------~~~~ 228 (476)
.++| +|++.||+|+... +|. ...+++..+.+...+ ..+..... ..+.
T Consensus 225 ~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred ccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 2566 8999999998320 000 001334444444433 22221111 2477
Q ss_pred EEeeecccccccccccc
Q 011837 229 FLPISGLMGLNMKTRVD 245 (476)
Q Consensus 229 ~ipvSa~~g~~i~~~~~ 245 (476)
+..+||+++.|+...+.
T Consensus 304 ~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFM 320 (340)
T ss_dssp EEEECTTCHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHH
Confidence 88999999999988643
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=8.3e-09 Score=106.52 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCcC----cHHHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~----f~~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.+.||||||... +...+... +..+|.+++|+|+..+. ...+.+..+... +|-.++++||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 678899999999753 33333222 23789999999998863 233333333321 441267999999
Q ss_pred CC
Q 011837 195 DH 196 (476)
Q Consensus 195 l~ 196 (476)
..
T Consensus 252 ~~ 253 (504)
T 2j37_W 252 GH 253 (504)
T ss_dssp SC
T ss_pred cc
Confidence 84
No 208
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.80 E-value=3.7e-08 Score=97.43 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=47.7
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCC-------CccccccCCCCchHHHHHHHHH----cCCceEEEEE
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAKT----LGVTKLLLVV 190 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~-------g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvvi 190 (476)
...+.+|||+|+++|.+.+....+.++++|+|+|.+. ......+ ......+..+.. .++| +|++.
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~~~i~~~~~~~~~p-iiLvg 257 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELFDWVLKQPCFEKTS-FMLFL 257 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHHHHHHTCGGGSSCE-EEEEE
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHHHHHHhccccCCCe-EEEEE
Confidence 4679999999999999999999999999999999861 1000000 122222222221 2566 99999
Q ss_pred EccCC
Q 011837 191 NKMDD 195 (476)
Q Consensus 191 NK~Dl 195 (476)
||+|+
T Consensus 258 NK~DL 262 (354)
T 2xtz_A 258 NKFDI 262 (354)
T ss_dssp ECHHH
T ss_pred ECcch
Confidence 99998
No 209
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.78 E-value=5.5e-08 Score=97.45 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=57.3
Q ss_pred EEeeeeEEEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCC---ccccc-cCCCCchHHHHHHHHH----c
Q 011837 110 TVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETG-FEKGGQTREHVMLAKT----L 181 (476)
Q Consensus 110 ti~~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g---~~e~~-~~~~~qt~e~l~~~~~----l 181 (476)
|+......|..++..+.+|||+|++.|.+.+....+.++++|+|+|.+.- ..|.. .+........+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 44444456777889999999999999999999999999999999998861 00000 0000112222222222 2
Q ss_pred CCceEEEEEEccCC
Q 011837 182 GVTKLLLVVNKMDD 195 (476)
Q Consensus 182 ~i~~iIvviNK~Dl 195 (476)
++| +|++.||+|+
T Consensus 284 ~~p-iiLvgNK~DL 296 (402)
T 1azs_C 284 TIS-VILFLNKQDL 296 (402)
T ss_dssp SCC-EEEEEECHHH
T ss_pred CCe-EEEEEEChhh
Confidence 466 8999999998
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.63 E-value=1e-07 Score=96.00 Aligned_cols=139 Identities=13% Similarity=0.184 Sum_probs=71.3
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 121 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~ 121 (476)
.-..++++++|+.|+|||||++.|+... +.... +.. ...+.+.......+...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~--------------------~~~-----~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEP--------------------ATH-----TQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCc--------------------CCC-----CCccceEeeEEEEeecC
Confidence 3345679999999999999999985321 11000 000 01122222222222222
Q ss_pred C--eEEEEEeCCCCcCcH-------------HH----Hhh---hc-------ccc--C-EEEEEEECCCCccccccCCCC
Q 011837 122 T--TRFTILDAPGHKSYV-------------PN----MIS---GA-------SQA--D-IGVLVISARKGEFETGFEKGG 169 (476)
Q Consensus 122 ~--~~~~liDtPGh~~f~-------------~~----~~~---~~-------~~a--D-~avlVVda~~g~~e~~~~~~~ 169 (476)
+ ..++++|+||..... .. ++. ++ ..+ | ++++|+|+.++.. .
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~-------~ 164 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK-------S 164 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C-------H
T ss_pred ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC-------H
Confidence 2 368999999964321 11 111 11 112 2 4666778877652 2
Q ss_pred chHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 170 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 170 qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
...+.+..+. .+++ +|+|+||+|... .......++.+...++..|
T Consensus 165 ~Dieilk~L~-~~~~-vI~Vi~KtD~Lt----~~E~~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 165 LDLVTMKKLD-SKVN-IIPIIAKADAIS----KSELTKFKIKITSELVSNG 209 (427)
T ss_dssp HHHHHHHHTC-SCSE-EEEEESCGGGSC----HHHHHHHHHHHHHHHBTTB
T ss_pred HHHHHHHHHh-hCCC-EEEEEcchhccc----hHHHHHHHHHHHHHHHHcC
Confidence 3333333333 4565 999999999843 4456666677766555544
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.57 E-value=3.7e-09 Score=105.62 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=83.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeE
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 124 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~ 124 (476)
..+|+++|.+|+|||||+|+|+..... . .+........|.|.+.....+ . ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~--------------~-----------~~~~~~~~~~gtT~~~~~~~~--~-~~ 213 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATG--------------K-----------GNVITTSYFPGTTLDMIEIPL--E-SG 213 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHH--------------T-----------TCCCEEEECTTSSCEEEEEEC--S-TT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccC--------------C-----------ccceeecCCCCeEEeeEEEEe--C-CC
Confidence 358999999999999999999643100 0 000111223455555443322 2 24
Q ss_pred EEEEeCCCCcCc-------HHHHhhhc---cccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 125 FTILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 125 ~~liDtPGh~~f-------~~~~~~~~---~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
+.++||||..+. ....+..+ ...|..++++++....+..++.. +..+...++| +++++||+|
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCce-EEEEecCCc
Confidence 899999994321 11112222 57899999999976544322221 2223334666 899999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 242 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~ 242 (476)
..... ..+...+.+++. +| ..+.|.++....++.+
T Consensus 286 ~~~~~----~~~~~~~~~~~~---~g------~~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 286 TVHRT----KLEKADSLYANQ---LG------ELLSPPSKRYAAEFPP 320 (369)
T ss_dssp CEEEE----EGGGHHHHHHHH---BT------TTBCSSCGGGTTTCCC
T ss_pred ccccc----cHHHHHHHHHHh---cC------CccCCCCchhhhhccC
Confidence 84332 122233333332 22 2466777666555544
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.55 E-value=4.1e-07 Score=86.69 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=44.2
Q ss_pred ccCEEEEEEECC-CCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccC
Q 011837 146 QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 221 (476)
Q Consensus 146 ~aD~avlVVda~-~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~ 221 (476)
.++++++++|.. +|.. +...+.+..+... ++ +|+++||+|.. ..+.....++.+...++..+.
T Consensus 111 Ral~~lllldep~~gL~-------~lD~~~l~~L~~~-~~-vI~Vi~K~D~l----t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLR-------PLDLEFMKHLSKV-VN-IIPVIAKADTM----TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp SCCEEEEEECCCSSSCC-------HHHHHHHHHHHTT-SE-EEEEETTGGGS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeeEEEecCCCcCC-------HHHHHHHHHHHhc-Cc-EEEEEeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 468899999955 5542 4556666666655 65 99999999984 345566777777777776654
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.55 E-value=1.3e-08 Score=101.53 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=82.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCCeEE
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 125 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~ 125 (476)
.+|+++|.+|+|||||+|+|+..... +. .+........|.|.+.....+ . ..+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~-----------------~~-------~~~~~~~~~~gtT~~~~~~~~--~-~~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSD-----------------ET-------ENVITTSHFPGTTLDLIDIPL--D-EES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTT-----------------SC-------SSCCEEECCC----CEEEEES--S-SSC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcc-----------------cc-------ccceecCCCCCeecceEEEEe--c-CCe
Confidence 68999999999999999999753210 00 000111234556655544332 2 238
Q ss_pred EEEeCCCCcCc-------HHHHhhh---ccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 126 TILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 126 ~liDtPGh~~f-------~~~~~~~---~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.++||||..+. ....+.. ....+..++++++....+..++.. +..+...++| +++++||+|.
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d~ 285 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRLT 285 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTSC
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCccc
Confidence 99999994321 1122222 357899999999976554333221 1222334666 8999999998
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 196 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
... ...+...+.+++. +| ..+.|.++....++.++
T Consensus 286 ~~~----~~~~~~~~~~~~~---~g------~~l~p~~~~~~~~~~~l 320 (368)
T 3h2y_A 286 IHR----TKLEKADELYKNH---AG------DLLSPPTPEELENMPEL 320 (368)
T ss_dssp EEE----EEHHHHHHHHHHH---BT------TTBCSSCHHHHHTSCCE
T ss_pred ccc----ccHHHHHHHHHHH---hC------CccCCCchhhHhhccCc
Confidence 433 2233333333332 33 24567776665555543
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.52 E-value=8.2e-08 Score=95.86 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=49.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeC-
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 121 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~- 121 (476)
....+|+++|.+|+|||||+++|....- ......+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-------------------------------~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-------------------------------SAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCCccccCceeEEEEECC
Confidence 3457899999999999999999852110 00011233333333332222
Q ss_pred ----------------CeEEEEEeCCCCcCcHH-------HHhhhccccCEEEEEEECCC
Q 011837 122 ----------------TTRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 ----------------~~~~~liDtPGh~~f~~-------~~~~~~~~aD~avlVVda~~ 158 (476)
...+.|+||||...+.. .....++.+|++++|+|+.+
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999877543 45566789999999999975
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.48 E-value=1.2e-06 Score=88.28 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=83.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
....++++|+.|||||||++.|+. .+... .|. ...+..+..+ .+. .+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G---l~~p~-----------~Gs------I~~~g~~~t~-~~~-------v~q~~~~ 119 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG---IGNEE-----------EGA------AKTGVVEVTM-ERH-------PYKHPNI 119 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT---CCTTS-----------TTS------CCCCC----C-CCE-------EEECSSC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC---CCCcc-----------Cce------EEECCeecce-eEE-------ecccccc
Confidence 345899999999999999999853 22110 010 0011100001 111 122222
Q ss_pred eEEEEEeCCCCc---CcHHHHhh--hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q 011837 123 TRFTILDAPGHK---SYVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 197 (476)
Q Consensus 123 ~~~~liDtPGh~---~f~~~~~~--~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~ 197 (476)
..++++|+||.. .-....+. ++...|..++ ++...+. .|....+..+...+.| +++|+||.|+.-
T Consensus 120 ~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~--------kqrv~la~aL~~~~~p-~~lV~tkpdlll 189 (413)
T 1tq4_A 120 PNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK--------KNDIDIAKAISMMKKE-FYFVRTKVDSDI 189 (413)
T ss_dssp TTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC--------HHHHHHHHHHHHTTCE-EEEEECCHHHHH
T ss_pred CCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc--------HHHHHHHHHHHhcCCC-eEEEEecCcccc
Confidence 368999999942 11223332 3444465554 7765432 3444455556667887 889999999731
Q ss_pred c-----CccHHHHHHHHHHHHHHH----HhccCCcCCCeeEEeeec--ccccccccc
Q 011837 198 V-----NWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTR 243 (476)
Q Consensus 198 ~-----~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~ipvSa--~~g~~i~~~ 243 (476)
. ..+....+++.+.+..+. +..|.+ ...+|++|+ ..+.|++++
T Consensus 190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHH
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHH
Confidence 0 001111223333444432 333322 236899999 666678774
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=1.6e-06 Score=87.66 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCeEEEEEeCCCCcCc----HHHH--hhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~--~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.+.|+||||.... ...+ +..+..+|.++||+||..|. .....+..... .++-..|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4578999999994332 2222 12234689999999998762 33333333332 2232457999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.... ... +..+.... ..|+.+++. |++++++
T Consensus 251 ~~~~------gG~----~ls~~~~~------g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 251 GSAK------GGG----ALSAVAAT------GAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp SCSS------HHH----HHHHHHTT------CCCEEEEEC--SSSTTCE
T ss_pred Cccc------ccH----HHHHHHHH------CCCEEEEEc--CCChHHh
Confidence 8321 111 11222222 346777774 9998775
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.45 E-value=1.1e-06 Score=89.17 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=41.7
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhh--hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC-ceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~--~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i-~~iIvviNK~ 193 (476)
.++.+.|+||||.... ...+.. .+..+|.+++|+|+..|. .....+.... .++ +...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 5678999999996653 222222 233699999999998762 2222222222 234 4367899999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 249 D~ 250 (432)
T 2v3c_C 249 DG 250 (432)
T ss_dssp SS
T ss_pred CC
Confidence 98
No 218
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.37 E-value=5.1e-07 Score=87.52 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=69.1
Q ss_pred EEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHH
Q 011837 124 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 203 (476)
Q Consensus 124 ~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~ 203 (476)
.+.+||+ |++|.......++.+|++|+|+|++...+ .+ ....+.+..+...++| +|+|+||+|+.. +.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL~~----~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDLYD----ED 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGGCC----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHcCC----ch
Confidence 7899999 89988777778899999999999987531 01 1223333444556787 889999999932 11
Q ss_pred HHHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 204 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 204 ~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.. +++..+++.++- . .+++++||++|.|++++.
T Consensus 132 ~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHH
T ss_pred hH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHH
Confidence 22 223333333320 1 479999999999998853
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.36 E-value=1.6e-06 Score=87.67 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCCcC------cHHHHhh--hccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEE
Q 011837 121 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 191 (476)
Q Consensus 121 ~~~~~~liDtPGh~~------f~~~~~~--~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviN 191 (476)
.++.+.|+||||... +...+.. .+..+|.++||+|+..|. .....+.... .+++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999644 3333322 223579999999998763 3334443333 3444 457999
Q ss_pred ccCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 192 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 192 K~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
|+|... +....... .... ..|+..++. |++++++
T Consensus 247 KlD~~a------~~G~als~----~~~~------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGTA------KGGGALSA----VVAT------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGCS------CHHHHHHH----HHHH------TCEEEEEEC--CSSSSCE
T ss_pred cccccc------cchHHHHH----HHHH------CCCEEEEEC--CCChHhC
Confidence 999732 11122221 1122 357777775 8888654
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.27 E-value=2.7e-06 Score=82.11 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCeEEEEEeCCCCcC--cHHHHh------hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEc
Q 011837 121 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 192 (476)
Q Consensus 121 ~~~~~~liDtPGh~~--f~~~~~------~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK 192 (476)
.++.+.|+||||... ....+. ..+..+|.+++|+|+..+. +..+.+..... .++-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---------KAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---------HHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999766 322222 2445799999999997642 34444433333 34435579999
Q ss_pred cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 193 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 193 ~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+|... +...+ ..+.... ..|+..++ .|++++++
T Consensus 249 ~D~~~------~~g~~----~~~~~~~------~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 249 MDGTA------KGGGA----LSAVAAT------GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGGCT------THHHH----HHHHHTT------TCCEEEEE--CSSSTTCE
T ss_pred CCCCc------chHHH----HHHHHHH------CcCEEEEe--CCCChhhc
Confidence 99721 11111 1233333 34666665 58888664
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=2.1e-06 Score=85.89 Aligned_cols=85 Identities=19% Similarity=0.118 Sum_probs=55.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEEeCC-
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 122 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~- 122 (476)
+..+|+++|++|+|||||+++|....-.. .....+.|++.....+...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~------------------------------~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGN------------------------------PANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTS------------------------------TTCCSSCCCCTTEEEEEECCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccc------------------------------ccCCCceeecceeeeeeeCCc
Confidence 45789999999999999999995321100 01122334433333333332
Q ss_pred ----------------eEEEEEeCCCCcC-------cHHHHhhhccccCEEEEEEECCC
Q 011837 123 ----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 123 ----------------~~~~liDtPGh~~-------f~~~~~~~~~~aD~avlVVda~~ 158 (476)
..+.++|+||... +.......++.+|.+++|+|+..
T Consensus 69 r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 69 RFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred chhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999433 34456667789999999999864
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=3.6e-06 Score=80.59 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred EEeCCCCc-CcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH-cCCceEEEEEEccCCCCcCccHHH
Q 011837 127 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 127 liDtPGh~-~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
+-+.|||. +..+++...+..+|+++.|+||..+.. ... ..+ .+. .+.| .++|+||+|+.+ .+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~-~~l--~~~l~~kp-~ilVlNK~DL~~----~~~ 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRN-PMI--EDILKNKP-RIMLLNKADKAD----AAV 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSC-HHH--HHHCSSSC-EEEEEECGGGSC----HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCC-HHH--HHHHCCCC-EEEEEECcccCC----HHH
Confidence 45689997 567788889999999999999998652 111 112 222 3455 789999999942 222
Q ss_pred HHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
. +...++++..| .+++++||.+|.|+.++.
T Consensus 68 ~----~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 68 T----QQWKEHFENQG------IRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp H----HHHHHHHHTTT------CCEEECCTTTCTTGGGHH
T ss_pred H----HHHHHHHHhcC------CcEEEEECCCcccHHHHH
Confidence 2 22333444333 468999999999999853
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.05 E-value=5.7e-06 Score=83.96 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCcCcHHHHhh------hccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~------~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.||||||...+...+.. .+..+|.+++|+|+..|. .....+.... .+++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 4678999999997655333322 234789999999998652 2333332222 34443 3589999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=3.3e-05 Score=75.44 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=55.2
Q ss_pred CeEEEEEeCCCCcC----cHHHHhh--hccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEccC
Q 011837 122 TTRFTILDAPGHKS----YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 194 (476)
Q Consensus 122 ~~~~~liDtPGh~~----f~~~~~~--~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~D 194 (476)
++.+.++||+|... +...+.. .+-.+|-.++++|+..+ .+..+.+..+. ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 45677899999643 2322211 12358999999998876 24455554444 46775 46899999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 195 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 195 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.... -. .+. ..+... ..|+..++ +|++++++
T Consensus 280 ~~a~--~G----~~l----~~~~~~------~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 280 ADAR--GG----AAL----SISYVI------DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GCSC--CH----HHH----HHHHHH------TCCEEEEE--CSSSTTCE
T ss_pred Cccc--hh----HHH----HHHHHH------CCCEEEEe--CCCCcccc
Confidence 6221 11 111 222333 34677777 78888764
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.00 E-value=6.4e-06 Score=79.74 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=62.2
Q ss_pred CcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHH
Q 011837 133 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 212 (476)
Q Consensus 133 h~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l 212 (476)
|++|.......++.+|.+++|+|+++..+. + ....+.+..+...++| +|+|+||+|+. + +..++ ..++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~--~--~~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDLL--N--EEEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGGC--C--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccCC--C--ccccH-HHHHH
Confidence 555544444568899999999999875421 1 1223445556667888 78999999993 2 21111 12334
Q ss_pred HHHHHhccCCcCCCeeEEeeecccccccccccc
Q 011837 213 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 245 (476)
Q Consensus 213 ~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~~ 245 (476)
..+++..| .+++++||++|.|++++.+
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 44455544 3799999999999998643
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.93 E-value=4.9e-06 Score=87.29 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.8
Q ss_pred ccceeEEEEEecCCCChHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..+..+|+|+|.+|+|||||+|+|+
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~ 59 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLA 59 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHT
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHc
Confidence 5677899999999999999999995
No 227
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.87 E-value=2.7e-05 Score=70.15 Aligned_cols=178 Identities=10% Similarity=0.049 Sum_probs=83.1
Q ss_pred ccceeEEEEEec-CCCChHHHHHHHHHHhCCcc-----hHHHHHHHH--HHhhcCccchhhhhhcCCchhhhccccEEee
Q 011837 42 NKRHLNVVFIGH-VDAGKSTTGGQILFLSGQVD-----DRTIQKYEK--EAKDKSRESWYMAYIMDTNEEERIKGKTVEV 113 (476)
Q Consensus 42 ~~~~~~i~ivG~-~d~GKSTLi~~Ll~~~g~i~-----~~~~~~~~~--~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~ 113 (476)
.+..+++|+.|+ -..=+.+|+.+|++..-... .+++.-.-. ...-.+...|..-++...+..||++...-+.
T Consensus 13 ~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~ 92 (227)
T 3l82_B 13 IQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHT 92 (227)
T ss_dssp CCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------------
T ss_pred cCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhh
Confidence 456789999998 34556689999986332221 111000000 0000001122333333444444443222111
Q ss_pred eeEEEEeCCeEEEEEeCC------CCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHH----HH-H--
Q 011837 114 GRAHFETETTRFTILDAP------GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AK-T-- 180 (476)
Q Consensus 114 ~~~~~~~~~~~~~liDtP------Gh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~----~~-~-- 180 (476)
+. ..++..-.+| |+..+...+..+...+|++|+|||+++... ...++.+.. +. .
T Consensus 93 ~~------~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~ 159 (227)
T 3l82_B 93 SA------VNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFG 159 (227)
T ss_dssp ------------------------------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSS
T ss_pred hh------hhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhh
Confidence 11 1223334444 788888888889999999999999987532 125544321 11 1
Q ss_pred -cCCceEEEEEEcc-CCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 181 -LGVTKLLLVVNKM-DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 181 -l~i~~iIvviNK~-Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
.++| ++|+.||. |++.+- +. .++.+.+. |..+ . ....+.+|||++|+|+.+-
T Consensus 160 L~gap-LLVlANKqqDlp~Am-s~---~EI~e~L~--L~~l--~--R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 160 SSGRP-LLVLSCISQGDVKRM-PC---FYLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp CSCSC-EEEEEEESSTTSCBC-CH---HHHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred hCCCe-EEEEeCCCcCccCCC-CH---HHHHHHcC--CcCC--C--CCEEEEEeECCCCcCHHHH
Confidence 3677 88899995 775442 22 23333221 2222 1 3678999999999999873
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.77 E-value=5.5e-05 Score=71.53 Aligned_cols=87 Identities=16% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCcCc-HHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHH
Q 011837 130 APGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 208 (476)
Q Consensus 130 tPGh~~f-~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~ 208 (476)
-|||... .+++...+..+|++++|+||..+..... .... + + +.| .++|+||+|+.+ .+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l~--l--l---~k~-~iivlNK~DL~~----~~~~--- 64 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGVD--F--S---RKE-TIILLNKVDIAD----EKTT--- 64 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTSC--C--T---TSE-EEEEEECGGGSC----HHHH---
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHHH--h--c---CCC-cEEEEECccCCC----HHHH---
Confidence 3898765 4577778899999999999998753211 1111 1 1 776 778999999942 2222
Q ss_pred HHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 209 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 209 ~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+....+++..| .++ ++||.+|.|+.++
T Consensus 65 -~~~~~~~~~~g------~~v-~iSa~~~~gi~~L 91 (262)
T 3cnl_A 65 -KKWVEFFKKQG------KRV-ITTHKGEPRKVLL 91 (262)
T ss_dssp -HHHHHHHHHTT------CCE-EECCTTSCHHHHH
T ss_pred -HHHHHHHHHcC------CeE-EEECCCCcCHHHH
Confidence 22333444444 356 9999999998874
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.75 E-value=2.4e-05 Score=74.83 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
...++++++|.+|+|||||+|+|+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 456899999999999999999995
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.74 E-value=2.8e-05 Score=77.42 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=63.6
Q ss_pred EEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHH
Q 011837 125 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 204 (476)
Q Consensus 125 ~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~ 204 (476)
+.-+++| +++|.+........+|++++|+|+.+... .+. ....+.+ .+.| +++|+||+|+.+.+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~--~~l~~~l-----~~~p-iilV~NK~DLl~~~~~--- 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SFI--PGLPRFA-----ADNP-ILLVGNKADLLPRSVK--- 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCC--SSHHHHC-----TTSC-EEEEEECGGGSCTTCC---
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--chh--hHHHHHh-----CCCC-EEEEEEChhcCCCccC---
Confidence 4445554 78888877777788999999999987441 111 2222221 2556 8899999999543222
Q ss_pred HHHHHHHHHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 205 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 205 ~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
.+.+.+.+..+++..|+. ..+++++||++|.|+.++.
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 153 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVM 153 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHH
Confidence 233444555566776663 2368999999999998853
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.73 E-value=2.8e-05 Score=77.36 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHH
Q 011837 132 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESK 211 (476)
Q Consensus 132 Gh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~ 211 (476)
..++|.+.+....+.+|++++|+|+.+.. ..+. ....+++ .+.| +++|+||+|+.+.+.. .+++.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~--~~l~~~~-----~~~p-~ilV~NK~DL~~~~~~---~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWL--PGLHRFV-----GNNK-VLLVGNKADLIPKSVK---HDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCC--TTHHHHS-----SSSC-EEEEEECGGGSCTTSC---HHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHH--HHHHHHh-----CCCc-EEEEEEChhcCCcccC---HHHHHHH
Confidence 45778877777777889999999998632 1111 2222221 2566 8899999999543222 2334444
Q ss_pred HHHHHHhccCCcCCCeeEEeeeccccccccccc
Q 011837 212 MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 212 l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+..+++..|+. ..+++++||++|.|+.++.
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~ 151 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELA 151 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHH
Confidence 55556666653 2368999999999998853
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=6.7e-05 Score=72.41 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=56.8
Q ss_pred hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 143 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 143 ~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
.+..+|.+++|+|+..+.+. . ....+.+..+...+++ .++|+||+|+.+. ....+..+.+..+++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~----~-~~i~r~L~~~~~~~~~-~vivlnK~DL~~~----~~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS----T-ALLDRFLVLVEANDIQ-PIICITKMDLIED----QDTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC----H-HHHHHHHHHHHTTTCE-EEEEEECGGGCCC----HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCC----H-HHHHHHHHHHHHCCCC-EEEEEECCccCch----hhhHHHHHHHHHHHHhCCC-
Confidence 57899999999999987642 1 1223334444557888 6789999999432 1111122334445555554
Q ss_pred cCCCeeEEeeeccccccccccc
Q 011837 223 VKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 223 ~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+++++||.+|.|++++.
T Consensus 152 -----~v~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADII 168 (307)
T ss_dssp -----CEEECCHHHHTTCTTTG
T ss_pred -----eEEEEecCCCCCHHHHH
Confidence 58999999999988753
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.62 E-value=0.0001 Score=75.29 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcCcHHH-------Hhhhc-----cccCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcCCceEE
Q 011837 121 ETTRFTILDAPGHKSYVPN-------MISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLL 187 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~-------~~~~~-----~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~~l~i~~iI 187 (476)
.++.+.|+||+|....... +...+ ..++-.+||+|+..|. .....+... ..+++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it-g- 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT-G- 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS-E-
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC-E-
Confidence 3566889999996433222 11111 1367899999998762 222333333 356776 3
Q ss_pred EEEEccCC
Q 011837 188 LVVNKMDD 195 (476)
Q Consensus 188 vviNK~Dl 195 (476)
+++||+|-
T Consensus 443 vIlTKLD~ 450 (503)
T 2yhs_A 443 ITLTKLDG 450 (503)
T ss_dssp EEEECGGG
T ss_pred EEEEcCCC
Confidence 68999996
No 234
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.57 E-value=5.5e-05 Score=59.11 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=66.0
Q ss_pred EEEEEEE--ccCCeEEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCceeee
Q 011837 277 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 351 (476)
Q Consensus 277 ~~v~~~~--~~~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 351 (476)
..|.++| +..|+++..+|.+|.++.+..+++..++. ..++.|+.++..++.++.+|.-|+|.|.+. .|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 3445556 35699999999999999999999999884 458999999999999999999999999866 4799999
Q ss_pred EEec
Q 011837 352 VLSS 355 (476)
Q Consensus 352 vl~~ 355 (476)
+|-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 235
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.53 E-value=0.00024 Score=57.45 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=67.4
Q ss_pred EEEEEEEEc--cCCe---EEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeecCCCCeEEEEEeccCccCc
Q 011837 276 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 347 (476)
Q Consensus 276 ~~~v~~~~~--~~G~---v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~~~~i 347 (476)
+..|.++|+ ..|. ++..+|..|.|+.+..+++..++. ..++.|+.++.+++.++..|.-|+|.|.+.+ .|+
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~fn-iDi 90 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEK-VEF 90 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTT-SCC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccCC-CCC
Confidence 566777773 4577 899999999999999999999884 4578899999999999999999999998653 169
Q ss_pred eeeeEEecC
Q 011837 348 LSGFVLSSV 356 (476)
Q Consensus 348 ~~G~vl~~~ 356 (476)
+.||+|-.-
T Consensus 91 k~GDiIE~y 99 (120)
T 2crv_A 91 KPGDQVICY 99 (120)
T ss_dssp CTTEEEEEE
T ss_pred CCCCEEEEE
Confidence 999998543
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=0.0002 Score=69.15 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCcCcHHHHhh-----------h-ccccCEEEEEEECCCCccccccCCCCchHHHHHHH-HHcCCceEEE
Q 011837 122 TTRFTILDAPGHKSYVPNMIS-----------G-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 188 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~-----------~-~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~-~~l~i~~iIv 188 (476)
+..+.++||+|.......... + +..++.++|++|+..+. +..+.+..+ ...++. ++
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---------~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---------NGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---------HHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---------HHHHHHHHHHHHcCCc--EE
Confidence 345679999995433222111 1 13588899999998763 344444433 345775 46
Q ss_pred EEEccCCC
Q 011837 189 VVNKMDDH 196 (476)
Q Consensus 189 viNK~Dl~ 196 (476)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 89999973
No 237
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00032 Score=66.33 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=88.6
Q ss_pred cCccceeEEEEEecC-CCChHHHHHHHHHHhCC-----cchHHHHHHHH--HHhhcCccchhhhhhcCCchhhhccccEE
Q 011837 40 GNNKRHLNVVFIGHV-DAGKSTTGGQILFLSGQ-----VDDRTIQKYEK--EAKDKSRESWYMAYIMDTNEEERIKGKTV 111 (476)
Q Consensus 40 ~~~~~~~~i~ivG~~-d~GKSTLi~~Ll~~~g~-----i~~~~~~~~~~--~~~~~g~~s~~~~~~~d~~~~e~~~g~ti 111 (476)
.-.+..+++|+.|+- ..=..+|+.+|++.... +..+++.-.-. ...-.+...|..-.+.-.+..||+|....
T Consensus 96 l~~~~~pr~amFGpGlE~~~~~lv~~lm~~~e~~p~~g~~~r~~~giGsGv~~~~~~~~~fni~tLYs~tr~ER~r~~~e 175 (312)
T 3l2o_B 96 LIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREE 175 (312)
T ss_dssp CCCCCCCEEEEECTHHHHSSSCHHHHHTTCGGGCCEECCSTTTCSSSCCCEEEEETTTEEEEEEECSCCCC---------
T ss_pred hhcCCCceEEEECCCcccccHHHHHHHHcCCCccccccccCCCcCccccceEEEECCceeEEEEEeccccHHHHhhhhhh
Confidence 445778999999972 12234688888753221 11111000000 00000011233334445555566554333
Q ss_pred eeeeE--EEEeCCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHH----HHH-H--H-c
Q 011837 112 EVGRA--HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLA-K--T-L 181 (476)
Q Consensus 112 ~~~~~--~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l----~~~-~--~-l 181 (476)
+.+.. -|...+. .==|..|+..+......+...+|++|+|||+++..- -..++.+ .++ . . .
T Consensus 176 ~~~~~~k~f~~~~~--~~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-------leak~EL~eL~~mL~e~~~l~ 246 (312)
T 3l2o_B 176 HTSAVNKMFSRHNE--GDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSS 246 (312)
T ss_dssp -----------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCC-------CCHHHHHHHHHHHHCHHHHCT
T ss_pred hhhhhhhhccccCC--CCcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-------HHHHHHHHHHHHHhcchhhcC
Confidence 22221 1111100 001245789999999999999999999999987542 1233322 222 1 1 4
Q ss_pred CCceEEEEEEc-cCCCCcCccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 182 GVTKLLLVVNK-MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 182 ~i~~iIvviNK-~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
++| ++|+.|| .|++.+- +. .++.+.+. |..+ . ....+.++||++|+|+.+-
T Consensus 247 ~ap-LLVfANKkQDlp~Am-s~---~EI~e~L~--L~~l--~--r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 247 GRP-LLVLSCISQGDVKRM-PC---FYLAHELH--LNLL--N--HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp TCC-EEEEEEESSTTSCBC-CH---HHHHHHTT--GGGG--C--SCEEEEEEETTTCTTHHHH
T ss_pred CCe-EEEEeCCcccccCCC-CH---HHHHHHcC--CccC--C--CcEEEEecccCCCcCHHHH
Confidence 788 8888997 5886542 22 22333221 2222 2 3678999999999999884
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.36 E-value=0.00046 Score=73.17 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.+.++++|+.|||||||++.|.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCChHHHHHHHHh
Confidence 3459999999999999999985
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.35 E-value=0.00022 Score=69.30 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=21.7
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++...|+++|..|+||||++..|..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557889999999999999998854
No 240
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.29 E-value=9.9e-05 Score=69.75 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.+++++|.+|+|||||+++|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 699999999999999999995
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.27 E-value=0.0003 Score=67.63 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCcCcHHH----Hhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSYVPN----MISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~----~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~D 194 (476)
.++.+.|+||||....... +...+. .+|..++|+|+..+.. ...+.......+++. -+++||+|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~--------~~~~~~~~~~~l~~~--giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE--------DMKHIVKRFSSVPVN--QYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH--------HHHHHTTTTSSSCCC--EEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH--------HHHHHHHHHhcCCCC--EEEEeCCC
Confidence 5678999999996544322 222222 4678899999987531 122222222223444 35679999
Q ss_pred CC
Q 011837 195 DH 196 (476)
Q Consensus 195 l~ 196 (476)
..
T Consensus 251 ~~ 252 (296)
T 2px0_A 251 ET 252 (296)
T ss_dssp TC
T ss_pred cc
Confidence 73
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.26 E-value=0.00066 Score=68.41 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.3
Q ss_pred CCeEEEEEeCCCCcCc----HHHHh--hhccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMI--SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~--~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.|+||||.... ...+. ..+..+|.++||+|+..+. .....+.... .+++. -|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHhcCCce--EEEEeCc
Confidence 5678999999996543 22221 2223689999999997642 2333332222 34443 4689999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 96
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.25 E-value=0.00077 Score=65.01 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
++...|+++|+.|+||||++..|..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 4456789999999999999998854
No 244
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.19 E-value=0.0012 Score=59.19 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC-----CceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~-----i~~iIvviNK~Dl 195 (476)
.+.+.++|+|+.. ...+...+..+|.+++++.++... . .+...+..+...+ ++ +.+++|++|.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-F-------SAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-H-------HHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-H-------HHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 5789999999976 334556677899999999886542 1 3444455555443 44 5789999995
No 245
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.04 E-value=0.0016 Score=67.11 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred HhhccCCCCCCCCCCeEEEEEEEEc--cCCeEEEEEEEEeeEecCCEEEEecCC---ceEEEEEEEECCeeeeecCCCCe
Q 011837 260 ALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGEN 334 (476)
Q Consensus 260 ~l~~i~~~~~~~~~p~~~~v~~~~~--~~G~v~~g~v~sG~l~~gd~v~~~p~~---~~~~V~si~~~~~~v~~a~aG~~ 334 (476)
++..+-.|.....---...|..+|+ ..|.++..+|..|.++.|..+++...+ ...++.||++++++++++..|+-
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~e 473 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGME 473 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCC
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCE
Confidence 3443333443333334555667884 459999999999999999999998777 36799999999999999999999
Q ss_pred EEEEEeccCccCceeeeEEecC
Q 011837 335 LRIRLSGIEEEDILSGFVLSSV 356 (476)
Q Consensus 335 v~l~l~~~~~~~i~~G~vl~~~ 356 (476)
|++.+.+.. +++.||+|-.-
T Consensus 474 cgi~~~~~~--~~~~gd~~~~~ 493 (501)
T 1zo1_I 474 CGIGVKNYN--DVRTGDVIEVF 493 (501)
T ss_dssp EEEEBCCCT--TCCTTCEEEEC
T ss_pred EEEEEcCcC--CCCCCCEEEEE
Confidence 999998764 79999998643
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.96 E-value=0.0019 Score=63.57 Aligned_cols=84 Identities=26% Similarity=0.215 Sum_probs=52.2
Q ss_pred hccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhccCC
Q 011837 143 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 222 (476)
Q Consensus 143 ~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~~~ 222 (476)
.+..+|.+++| +|....+ +. ....+.+..+...+++ .++|+||+|+.+ .+..+. .+.....+...|+
T Consensus 127 i~anvD~v~iv-~a~~P~~----~~-~~i~r~L~~a~~~~~~-~iivlNK~DL~~----~~~~~~-~~~~~~~y~~~G~- 193 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPEL----SL-NIIDRYLVGCETLQVE-PLIVLNKIDLLD----DEGMDF-VNEQMDIYRNIGY- 193 (358)
T ss_dssp EEECCCEEEEE-EESTTTC----CH-HHHHHHHHHHHHHTCE-EEEEEECGGGCC----HHHHHH-HHHHHHHHHTTTC-
T ss_pred HHhcCCEEEEE-EeCCCCC----CH-HHHHHHHHHHHhcCCC-EEEEEECccCCC----chhHHH-HHHHHHHHHhCCC-
Confidence 36789999976 5544432 11 1233344555668998 678999999943 222111 2233344555554
Q ss_pred cCCCeeEEeeeccccccccccc
Q 011837 223 VKKDVQFLPISGLMGLNMKTRV 244 (476)
Q Consensus 223 ~~~~~~~ipvSa~~g~~i~~~~ 244 (476)
+++++|+.+|.|+.++.
T Consensus 194 -----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 -----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp -----CEEECBTTTTBTHHHHH
T ss_pred -----cEEEEecCCCcCHHHHH
Confidence 58999999999988753
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.87 E-value=0.0033 Score=60.47 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.+.-.++++|+.|||||||+..|..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3446889999999999999998864
No 248
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.81 E-value=0.0031 Score=63.84 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=24.6
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
...+..-|+|+|..++|||||+|+|+..
T Consensus 63 ~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3567889999999999999999999754
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.74 E-value=0.0044 Score=60.99 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
++.-.++++|+.|||||||++.|..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3456889999999999999998864
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.60 E-value=0.0054 Score=58.75 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=38.2
Q ss_pred CCeEEEEEeCCCCcCc----HHHHhhh--ccccCEEEEEEECCCCccccccCCCCchHHHHHHHH-HcCCceEEEEEEcc
Q 011837 121 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 193 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f----~~~~~~~--~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~-~l~i~~iIvviNK~ 193 (476)
.++.+.|+||||.... ...+... ...+|.+++|+|+..+. ...+.+.... .+++. -+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~---------~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH---------HHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999985432 2222111 12589999999987541 2333333222 34443 3589999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 251
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.48 E-value=0.013 Score=61.55 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred CCeEEEEE--EEEc-cCCeEEEEEEEEeeEecCCEEEEecCC-ceEEEEEEEECCeeeeecCCCCeEEEEEeccC-ccCc
Q 011837 273 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDI 347 (476)
Q Consensus 273 ~p~~~~v~--~~~~-~~G~v~~g~v~sG~l~~gd~v~~~p~~-~~~~V~si~~~~~~v~~a~aG~~v~l~l~~~~-~~~i 347 (476)
.|..+.|. .+|+ ..|.++..+|..|.|+.|..+.+ +.+ ...+|.||++++++++++..|+-|++.+.+.. ..++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 45566555 5773 45889999999999999999998 555 56799999999999999999999999998742 2579
Q ss_pred eeeeEEecC
Q 011837 348 LSGFVLSSV 356 (476)
Q Consensus 348 ~~G~vl~~~ 356 (476)
+.||+|-..
T Consensus 541 ~~~d~~~~~ 549 (594)
T 1g7s_A 541 HEGDTLYVD 549 (594)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEE
Confidence 999998653
No 252
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.47 E-value=0.0056 Score=63.52 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=76.4
Q ss_pred HHHhhccCCCCCCCCCCeEEEEEEEEc---c--CCeEEEEEEEEeeEecCCEEEEecCCc---eEEEEEEEECCeeeeec
Q 011837 258 FEALDRIEITPRDPNGPFRMPIIDKFK---D--MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHA 329 (476)
Q Consensus 258 ~~~l~~i~~~~~~~~~p~~~~v~~~~~---~--~G~v~~g~v~sG~l~~gd~v~~~p~~~---~~~V~si~~~~~~v~~a 329 (476)
.+.+..+-.|.....-.-+..|..+|+ + .|.++.++|..|.++.|..+++...+. ..++.||+++.+++.++
T Consensus 431 ~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev 510 (537)
T 3izy_P 431 QEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVV 510 (537)
T ss_dssp HHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEE
T ss_pred HHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceE
Confidence 334444444555444556888889884 1 578999999999999999999998874 56888999999999999
Q ss_pred CCCCeEEEEEec-cCccCceeeeEEe
Q 011837 330 GPGENLRIRLSG-IEEEDILSGFVLS 354 (476)
Q Consensus 330 ~aG~~v~l~l~~-~~~~~i~~G~vl~ 354 (476)
..|.-|++.+.+ . .+++.||+|-
T Consensus 511 ~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 511 KTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp ETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred cCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 999999999997 5 4799999874
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.37 E-value=0.016 Score=52.31 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCCC-cCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc-CCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh-~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-~i~~iIvviNK~Dl 195 (476)
..+.+.++|||+. ... .+...+..+|.+|+++.++.... ..+...+..+... +.+ +.+++|++|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4578999999997 443 33456678999999998876432 3455556666664 566 7789999996
No 254
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.14 E-value=0.075 Score=49.59 Aligned_cols=65 Identities=9% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~--i~~iIvviNK~Dl 195 (476)
..+.+.|+|+|+.... .....+..+|.+|+++.++.... ..+...+..+..++ ++ +.+++|+++.
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 3577999999996543 34556677999999999876432 23444455555554 44 6789999964
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.01 E-value=0.019 Score=55.04 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~----l~i~~iIvviNK~Dl 195 (476)
..+.+.|+|||+..... .+...+..+|.+|+|+.+..... ..+...+..+.. .+++.+-+|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999864432 22345678999999998765322 234444555554 345433389999995
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.51 E-value=0.0047 Score=59.40 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 488999999999999999984
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.16 E-value=0.018 Score=55.30 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 258
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.15 E-value=0.011 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
+++++|+.|+|||||+..|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999886443
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.01 E-value=0.011 Score=51.98 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
..++++|++|||||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998653
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.97 E-value=0.0098 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
..++++|++|||||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998653
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.75 E-value=0.023 Score=49.30 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
-..|+++|++|||||||...|....|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 457999999999999999998665554
No 262
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.60 E-value=0.073 Score=53.63 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=69.3
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCc-cchhhhhhcCCchhhhccccEEeeeeEEEE
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 119 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 119 (476)
..++...|+|+|...+|||+|+|.|+...+..+.. .-.|. ....-.|-......-..+|+-+-.......
T Consensus 63 ~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~---------~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~ 133 (457)
T 4ido_A 63 RDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESV---------DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLIN 133 (457)
T ss_dssp TTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCT---------TTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEE
T ss_pred CCCceEEEEEECCCCCchhHHHHHHHHHhhccccc---------ccccccccCCCCceeCCCCCCcCceEEEecCccccc
Confidence 46688899999999999999999876432100000 00000 000001111112222355665544433333
Q ss_pred e---CCeEEEEEeCCCCcCcH-----HHHhhhcc--ccCEEEEEEECCCCccccccCCCCchHHHHHHHHHc--------
Q 011837 120 T---ETTRFTILDAPGHKSYV-----PNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-------- 181 (476)
Q Consensus 120 ~---~~~~~~liDtPGh~~f~-----~~~~~~~~--~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l-------- 181 (476)
. .+..+.|+||.|..+-- ...+.+++ .+++.|+=+... +- .+..++|.+.-.+
T Consensus 134 ~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~--i~-------~~~L~~L~~~tel~~~i~~~~ 204 (457)
T 4ido_A 134 KPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQN--VQ-------EDDLQHLQLFTEYGRLAMEET 204 (457)
T ss_dssp CTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESS--CC-------HHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccccc--CC-------HHHHHHHHHHHHHHHHHhhhc
Confidence 3 23568999999954331 23444444 466666555432 21 3555565443322
Q ss_pred ---CCceEEEEEEccCC
Q 011837 182 ---GVTKLLLVVNKMDD 195 (476)
Q Consensus 182 ---~i~~iIvviNK~Dl 195 (476)
-.|+++.++--.-+
T Consensus 205 ~~~~Fp~f~wlvRDf~l 221 (457)
T 4ido_A 205 FLKPFQSLIFLVRDWSF 221 (457)
T ss_dssp SSCSEEEEEEEEETCCC
T ss_pred ccccCCceEEEEecCCc
Confidence 14567777754443
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.56 E-value=0.016 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++++|+.|||||||++.|+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999864
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.56 E-value=0.019 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=21.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
++...|+|+|++|||||||+..|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988643
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.55 E-value=0.022 Score=51.13 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
+...|+++|+.|||||||++.|....+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999998865433
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.50 E-value=0.018 Score=51.41 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
..++++|+.|||||||+..|...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999998654
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.47 E-value=0.024 Score=50.66 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i 72 (476)
+...|+++|.+|||||||+..|....|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34579999999999999999987666653
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.38 E-value=0.022 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|++|||||||+..|..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998853
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.37 E-value=0.019 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
-.++++|+.|||||||++.|...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998643
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.31 E-value=0.022 Score=49.27 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..|+++|++|||||||...|....|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999998766564
No 271
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.30 E-value=0.042 Score=50.46 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
..+.+.|||||+.... .+...+..+|.+++|+.++.... ..+...+..+..++++.+.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4678999999986544 33455688999999999875432 244555566777888778899999994
No 272
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.29 E-value=0.02 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999753
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.21 E-value=0.022 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+--.++++|+.|||||||++.|...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3356899999999999999998643
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.15 E-value=0.031 Score=48.15 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.|+++|.+||||||+...|....|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999876555
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.13 E-value=0.026 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
..++++|+.|||||||++.|+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999998654
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.13 E-value=0.032 Score=51.59 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~i 72 (476)
...|+++|++|||||||+..|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3589999999999999999997666754
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.05 E-value=0.032 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999998 66664
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.03 E-value=0.029 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
+...|+++|++|+|||||++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999997543
No 279
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.98 E-value=0.064 Score=48.92 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.7
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.++|+|+... ..+...+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++||+|.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 47799999998654 445567789999999998875432 245556666777787767789999996
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.95 E-value=0.031 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+|||||||...|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999998766554
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.90 E-value=0.03 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
...|+++|++|||||||+..|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999986543
No 282
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.84 E-value=0.096 Score=48.79 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+.+.+..++..+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56789999999965432222223346899999998876542 245556666777788744389999984
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.82 E-value=0.035 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+--.++++|+.|||||||+..|...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3357899999999999999988543
No 284
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.75 E-value=0.03 Score=51.55 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999873
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.72 E-value=0.034 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.142 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.70 E-value=0.039 Score=49.99 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=24.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC--CcchHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG--QVDDRTI 77 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g--~i~~~~~ 77 (476)
..|+++|++||||||+...|....| .++.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 4799999999999999998876566 3444443
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.69 E-value=0.033 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..|+++|++|||||||+..|..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998853
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.58 E-value=0.046 Score=47.82 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999998766664
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.56 E-value=0.035 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++++|++|||||||+..|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3579999999999999999864
No 290
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.55 E-value=0.044 Score=50.62 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=23.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.+...|+|+|+.|||||||+..|....|.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34467999999999999999998765564
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.53 E-value=0.035 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|++|+|||||++.|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 378999999999999999985
No 292
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.51 E-value=0.078 Score=49.26 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=48.2
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++|++|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 57899999998654 445566788999999998765432 245555666666687767789999996
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.51 E-value=0.054 Score=47.35 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999998765564
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.49 E-value=0.055 Score=47.52 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357899999999999999998765554
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.48 E-value=0.041 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHHHh
Q 011837 48 VVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
|+|+|++|+|||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997543
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.44 E-value=0.05 Score=48.42 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+-.+|+++|.+||||||+...|....|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999766654
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.43 E-value=0.047 Score=47.79 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...++++|+.|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.42 E-value=0.047 Score=47.50 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...++++|+.|||||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.38 E-value=0.05 Score=48.20 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.|++.|.+||||||+...|....|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999998765554
No 300
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.37 E-value=0.044 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
..|+++|++|||||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999986544
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.35 E-value=0.054 Score=47.53 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999998766663
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.33 E-value=0.053 Score=48.78 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998766664
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.29 E-value=0.053 Score=49.02 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+..+|+++|.+||||||+...|....|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4468999999999999999998766664
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.27 E-value=0.032 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=16.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+-..++++|+.|||||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999886
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.26 E-value=0.046 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..|+++|++||||||+...|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 4799999999999999998854 553
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.26 E-value=0.042 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.+--.++|+|++|+|||||+..|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34458999999999999999988643
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.26 E-value=0.04 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||+..|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998853
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.23 E-value=0.042 Score=50.68 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred eEEEEEecCCCChHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~L 65 (476)
-.++++|+.|||||||++.|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 309
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.22 E-value=0.061 Score=51.95 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=23.4
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.+....|+|+|++|||||||+..|....
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556789999999999999999886554
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.21 E-value=0.042 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999873
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.18 E-value=0.043 Score=50.29 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 312
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.15 E-value=0.044 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.238 Sum_probs=19.2
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 3468999999999999999874
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.14 E-value=0.044 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999873
No 314
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.11 E-value=0.057 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.+|+++|.+||||||+...|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3699999999999999998865 55
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.09 E-value=0.048 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+--.++++|+.|||||||+..|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998853
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.08 E-value=0.026 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..++|+|++|||||||+..|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.06 E-value=0.053 Score=52.19 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.++...|+|+|++|||||||++.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345578999999999999999988653
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.06 E-value=0.051 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 319
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.05 E-value=0.068 Score=49.37 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
++..+|++.|.+||||||+...|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35678999999999999999999766664
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.04 E-value=0.046 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999873
No 321
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.04 E-value=0.058 Score=48.52 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|+++|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998766664
No 322
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.04 E-value=0.046 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.246 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999873
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.04 E-value=0.072 Score=47.34 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.....|++.|.+||||||+...|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34468999999999999999998766664
No 324
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.02 E-value=0.047 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999873
No 325
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.01 E-value=0.047 Score=51.19 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999873
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.99 E-value=0.065 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998766664
No 327
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.97 E-value=0.045 Score=49.62 Aligned_cols=20 Identities=35% Similarity=0.257 Sum_probs=18.1
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||++.|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999873
No 328
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.95 E-value=0.049 Score=50.32 Aligned_cols=21 Identities=43% Similarity=0.414 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 329
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.94 E-value=0.034 Score=56.83 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+....|.++|.+|+||||+..+|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999853
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.93 E-value=0.055 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++++|+.|+|||||+..|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 479999999999999998854
No 331
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.91 E-value=0.062 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|.++|.+||||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999865544
No 332
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.86 E-value=0.05 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999884
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.86 E-value=0.065 Score=49.81 Aligned_cols=29 Identities=17% Similarity=-0.043 Sum_probs=24.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCCc
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQV 72 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i 72 (476)
+...|+|+|+.|||||||+..|....|..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34689999999999999999987666653
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.85 E-value=0.06 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|++.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999865544
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.85 E-value=0.058 Score=48.02 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=21.6
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.+...|+++|.+|||||||...|...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988543
No 336
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.85 E-value=0.054 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999874
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.82 E-value=0.051 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.254 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 468999999999999999873
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.78 E-value=0.064 Score=47.95 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+...|+++|.+|||||||+..|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988543
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.76 E-value=0.066 Score=47.43 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+...|+|+|.+||||||+...|... |.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 4568999999999999999988654 53
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.75 E-value=0.076 Score=47.31 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|++.|.+||||||+...|....+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 367999999999999999998765553
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.75 E-value=0.07 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
++...|+++|.+||||||+...|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 342
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.72 E-value=0.055 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999873
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.71 E-value=0.078 Score=47.13 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.2
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
......|+++|.+||||||+...|....|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334468999999999999999998765554
No 344
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.70 E-value=0.093 Score=45.88 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|++.|.+||||||+...|....|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999998766663
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.69 E-value=0.074 Score=49.32 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.....|+|.|.+||||||+...|....|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999998866566
No 346
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.68 E-value=0.055 Score=50.48 Aligned_cols=21 Identities=38% Similarity=0.222 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 347
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.67 E-value=0.065 Score=51.00 Aligned_cols=26 Identities=42% Similarity=0.386 Sum_probs=22.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHH
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.++...|+|+|++|||||||+..|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998754
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.59 E-value=0.059 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|++.|.+||||||+...|....|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999876554
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.59 E-value=0.074 Score=46.35 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..+|+|+.|+|||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999976554
No 350
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.58 E-value=0.058 Score=50.83 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999873
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.57 E-value=0.082 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH-hC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFL-SG 70 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~-~g 70 (476)
..+|+++|.+||||||+...|... .|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999988655 35
No 352
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.57 E-value=0.07 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+++|.+||||||+...|....|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998766664
No 353
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.54 E-value=0.059 Score=50.61 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999873
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.53 E-value=0.058 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999886
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.52 E-value=0.063 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999874
No 356
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.48 E-value=0.071 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+...++|+|..|||||||+++|+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 356789999999999999999874
No 357
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.48 E-value=0.06 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999873
No 358
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.44 E-value=0.062 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999873
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.37 E-value=0.071 Score=46.23 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|+++|.+||||||+...|....|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999998766663
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.34 E-value=0.082 Score=47.21 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+...|++.|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998643
No 361
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.34 E-value=0.075 Score=46.25 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+|+||||+...|....|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999998655553
No 362
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.31 E-value=0.064 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..++++|++|+|||||++.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999984
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.31 E-value=0.073 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|||||||+..|..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.28 E-value=0.097 Score=50.19 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.+...|+|+|+.|||||||+..|....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999887643
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.23 E-value=0.082 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+...|+++|..|||||||+..|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 366
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.20 E-value=0.095 Score=47.14 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998766664
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.12 E-value=0.089 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...|....|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 67999999999999999998766664
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.08 E-value=0.097 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999988665553
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.00 E-value=0.083 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
...|++.|.+||||||+...|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998643
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.98 E-value=0.12 Score=45.87 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..+..|+++|.+||||||+...|....|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45689999999999999999988655464
No 371
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.97 E-value=0.28 Score=46.43 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.|||||....... ....+..+|.+|+|+.+..... ....+.+..+...+++.+-+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 36699999999754432 2334567999999999886543 356667777888888767789999996
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.95 E-value=0.08 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
...|++.|.+||||||+...|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999986543
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.95 E-value=0.077 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||++.|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999873
No 374
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.92 E-value=0.082 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999873
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.92 E-value=0.11 Score=44.66 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
-+|++.|.+||||||+...|....|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999988655554
No 376
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.81 E-value=0.084 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...++++|++|+|||||+..+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998853
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.80 E-value=0.073 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+--+++++|+.|||||||++.|+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 33589999999999999999985
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.73 E-value=0.078 Score=46.12 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=17.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|.+.|.+||||||+...|....|
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999865544
No 379
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.71 E-value=0.053 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+--.++|+|+.|||||||++.|+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHH
Confidence 33478999999999999998774
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.67 E-value=0.15 Score=46.18 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+...|.++|++||||+|....|....|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3456788999999999999999877775
No 381
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.66 E-value=0.098 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++|+|+.|||||||+..|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999998854
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.66 E-value=0.078 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.129 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 468999999999999999874
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.65 E-value=0.13 Score=48.84 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
....|.++|++|||||||...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999997654
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.65 E-value=0.095 Score=48.62 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.5
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.+....|.++|.+||||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34457899999999999999999865544
No 385
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.56 E-value=0.1 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+...++++|++|+|||||+..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.52 E-value=0.13 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
+|.++|++||||+|....|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999877775
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.50 E-value=0.11 Score=46.88 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
...|+|.|.+||||||+...|.. .|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 36899999999999999998754 553
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.50 E-value=0.1 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..|+++|.+||||||+...|....|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999998776664
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.43 E-value=0.072 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.6
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
--+++++|+.|||||||++.|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999885
No 390
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.37 E-value=0.092 Score=51.46 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHc-CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 169 GQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~l-~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
+|-++. .+++++ .-|++++ +|-|....+.....++.+.+..+.+..|
T Consensus 142 Gq~QRV-alArAL~~~P~lLL----LDEPts~LD~~~r~~l~~~l~~~~~~~g 189 (359)
T 3fvq_A 142 GQQQRA-ALARALAPDPELIL----LDEPFSALDEQLRRQIREDMIAALRANG 189 (359)
T ss_dssp HHHHHH-HHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 444443 4566655 7887777777777777777777766654
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.36 E-value=0.12 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.|++.|.+||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999986544
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.36 E-value=0.093 Score=47.91 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.0
Q ss_pred CccceeEEEEEecCCCChHHHHHHHHHH
Q 011837 41 NNKRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 41 ~~~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
..++-..|+|.|..|||||||++.|...
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3345578999999999999999988654
No 393
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.33 E-value=0.14 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.+|+++|.+||||||+...|....|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 57999999999999999998766664
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.32 E-value=0.093 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHh
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.-+++|+|+.|||||||+..|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999886543
No 395
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.31 E-value=0.1 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+.-.++++|+.|||||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999853
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.29 E-value=0.052 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.|+|.|.+||||||++..|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 397
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.25 E-value=0.14 Score=44.77 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999886543
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.24 E-value=0.13 Score=47.27 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
....|+|.|++||||||+...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999998766664
No 399
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.17 E-value=0.15 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.|+|+|++|||||||...|....|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999865554
No 400
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.14 E-value=0.6 Score=43.09 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 194 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~D 194 (476)
..+.+.|||||+..... ...++..+|.+|+++.+..... ..+...+..+.. .+++.+-+++|+.|
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~ 180 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLRLLGILVTMYD 180 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCEEEEEEEESBC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCceEEEEEEEeEC
Confidence 56789999999975543 3455678999999999876432 122333333332 14552237999998
Q ss_pred C
Q 011837 195 D 195 (476)
Q Consensus 195 l 195 (476)
.
T Consensus 181 ~ 181 (257)
T 1wcv_1 181 G 181 (257)
T ss_dssp T
T ss_pred C
Confidence 6
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.12 E-value=0.12 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...|+++|.+||||||+...|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998843
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.07 E-value=0.13 Score=44.21 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.|++.|.+||||||+...|....|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998765564
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.05 E-value=0.11 Score=48.13 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
-.+|+++|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999998766664
No 404
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.02 E-value=0.14 Score=44.61 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.+|+++|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999988665554
No 405
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.01 E-value=0.18 Score=46.08 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcC--CceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~--i~~iIvviNK~Dl 195 (476)
.+.+.|+|+|+.... .....+..+|.+++++.+..... ..+...+..+...+ .+.+-+++|+.|.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 477999999996543 34456778999999998875432 34555666666666 4457789999996
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.98 E-value=0.14 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998765553
No 407
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.85 E-value=0.1 Score=51.02 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=29.7
Q ss_pred CchHHHHHHHHH-cCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 169 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
+|-++. .++++ ..-|++++ +|-|....+...-+++.+.+.++.+..|
T Consensus 149 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 149 GQQQRV-ALARALAPRPQVLL----FDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHH-HHHHHHTTCCSEEE----EESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 454444 34444 35566665 7888777777777777777777665544
No 408
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.82 E-value=0.11 Score=51.10 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred CchHHHHHHHHH-cCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 169 GQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~-l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
+|-++. .++++ ..-|++++ +|-|....+....+++.+.+.++.+..|
T Consensus 137 Gq~QRv-alArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 137 GQQQRV-ALARALVKQPKVLL----FDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHHHH-HHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHcCCCEEE----EECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 454444 34444 34565665 7988777777777777777777665544
No 409
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.75 E-value=0.49 Score=45.03 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.|||||+...... ....+..+|.+|+|+.+..... .+..+.+..+...+++.+-+|+|++|.
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 36699999999755432 2233467999999999877543 467777778888887745478999996
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.66 E-value=0.11 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.0
Q ss_pred CceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 183 VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 183 i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
-|++++ +|-|....+.....++.+.+.++.++.|
T Consensus 151 ~P~lLL----LDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 151 EPSVFL----LDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp CCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEE----EECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 455655 7988777777777777777777766654
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.62 E-value=0.1 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..+++|+|+.|||||||++.|+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999985
No 412
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.57 E-value=0.33 Score=45.51 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
.+.+.|||||+...... ....+..+|.+|+|+.+..... ....+.+..+...+++.+=+|+|++|.
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 36799999999654322 2223457899999999876543 355556666777788744489999997
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.53 E-value=0.13 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 467999999999999999873
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.52 E-value=0.13 Score=43.50 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
-.+|+|+.|+|||||+.+|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999987644
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.52 E-value=0.12 Score=51.09 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 169 GQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
+|-++.........-|++++ +|-+....+....+++.+.+.++.+..|
T Consensus 143 Gq~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 190 (372)
T 1g29_1 143 GQRQRVALGRAIVRKPQVFL----MDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (372)
T ss_dssp HHHHHHHHHHHHHTCCSEEE----EECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEEE----ECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 45444333222234555665 7888777777777777777777665544
No 416
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.48 E-value=0.12 Score=51.02 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=31.3
Q ss_pred CCchHHHHHHHHHcCCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 168 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 168 ~~qt~e~l~~~~~l~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
++|-++.........-|++++ +|-+....+....+++.+.+.++.+..|
T Consensus 144 GGq~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLL----MDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEE----EcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 356555443333345566665 7988777787777777777777665544
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.40 E-value=0.17 Score=46.12 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
..+|+++|.+||||||+...|....|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999998766664
No 418
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.39 E-value=0.15 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.155 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+.-.++|+|+.|||||||+..|+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999998643
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.38 E-value=0.17 Score=47.87 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.2
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.....|+|.|.+||||||+...|. ..|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 345789999999999999999886 5553
No 420
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.27 E-value=0.18 Score=46.04 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=26.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhCC--cchHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ--VDDRTI 77 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~--i~~~~~ 77 (476)
.+...|+++|.+||||||+...|....|. ++.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 34468999999999999999988766663 444433
No 421
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.98 E-value=0.17 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..|+++|.+||||||+...|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 422
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.79 E-value=0.17 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 468999999999999998874
No 423
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.70 E-value=0.19 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.++++|++|+|||||+..|....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 499999999999999999865544
No 424
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.55 E-value=0.22 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhCC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.|+|.|.+||||||+...|....|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7999999999999999998765663
No 425
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.53 E-value=0.1 Score=51.00 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHc-CCceEEEEEEccCCCCcCccHHHHHHHHHHHHHHHHhcc
Q 011837 169 GQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 220 (476)
Q Consensus 169 ~qt~e~l~~~~~l-~i~~iIvviNK~Dl~~~~~~~~~~~~~~~~l~~~l~~~~ 220 (476)
+|-++ +.+++++ .-|++++ +|-+....+....+++.+.+.++.++.|
T Consensus 131 Gq~QR-valAraL~~~P~lLL----LDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 131 GEQQR-VALARALVTNPKILL----LDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHHHH-HHHHHHTTSCCSEEE----EESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 44444 3445554 4565655 7888777777777777777777665544
No 426
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.52 E-value=0.21 Score=45.00 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3678999999999999998863
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.44 E-value=0.2 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...|+++|.+||||||+...|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998843
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.44 E-value=0.11 Score=49.28 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
+.+.|+|.|.+||||||+...|....|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999875444
No 429
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.35 E-value=0.77 Score=43.28 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=43.0
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHH------cCCceEEEEEEccCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 195 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~------l~i~~iIvviNK~Dl 195 (476)
.+.+.|||||+..... ...++..+|.+|+++.+..... ..+...+..+.. .+++.+-+++|+.|.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 4779999999976543 3345567999999999876442 233333333333 256544589999996
No 430
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.30 E-value=0.25 Score=45.11 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=23.0
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhCC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 71 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g~ 71 (476)
.+.+++++|.+||||||+...|....|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999998766663
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.14 E-value=0.28 Score=44.75 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.6
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
+-..|++.|.+||||||++..|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999865543
No 432
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.07 E-value=0.27 Score=45.27 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=44.0
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCC--------ceEEEEEEcc
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 193 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i--------~~iIvviNK~ 193 (476)
.+.+.++|+|+... ......+..+|.+|+|+++..... ..+...+..+...+. ..+-+++|++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 68899999998654 345566778999999998875432 233344444443331 3477899999
Q ss_pred CC
Q 011837 194 DD 195 (476)
Q Consensus 194 Dl 195 (476)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 85
No 433
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.03 E-value=0.2 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
+--.++|+|+.|||||||+..|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999998853
No 434
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.92 E-value=1.1 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCC
Q 011837 122 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 158 (476)
Q Consensus 122 ~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~ 158 (476)
.+.+.|||+|+.. ...+...+..+|.+|+++.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999975 3455667889999999999864
No 435
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.69 E-value=0.25 Score=45.57 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
..+.++|++|+|||||+..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999986543
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.60 E-value=0.26 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
-+++++|+.|+|||||++.|...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988643
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.54 E-value=0.11 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999873
No 438
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.51 E-value=0.25 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3688999999999999998753
No 439
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.49 E-value=0.24 Score=48.69 Aligned_cols=21 Identities=38% Similarity=0.324 Sum_probs=18.4
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 011837 48 VVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
++|+|+.|||||||++++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 559999999999999998654
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.27 E-value=0.83 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=17.3
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
.-+.+.|++|+||||++-.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 467789999999999876664
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.23 E-value=0.34 Score=48.48 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.....|.++|.+||||||+..+|....|
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456788999999999999999864433
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.99 E-value=0.24 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|+.|||||||+..|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999998864
No 443
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.95 E-value=0.27 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999998854
No 444
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.79 E-value=0.26 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999874
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.62 E-value=0.26 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999874
No 446
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.61 E-value=0.35 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.+...++++|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34458899999999999999988643
No 447
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.55 E-value=0.32 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.++++|++|+|||||+..|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999986543
No 448
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=87.49 E-value=0.29 Score=47.40 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.-.++++|++|+|||||+..+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35689999999999999999866543
No 449
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.43 E-value=0.36 Score=41.52 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
....+.+.|++|+|||||+..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998853
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.42 E-value=0.27 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999999874
No 451
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.32 E-value=0.33 Score=44.05 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+..|..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998854
No 452
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.27 E-value=0.38 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
...+.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998543
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.22 E-value=0.32 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.09 E-value=0.29 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
-.+|+|+.|+|||||+.++.+..+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999876554
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.01 E-value=0.29 Score=50.72 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.92 E-value=0.37 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-+++++|+.|+|||||++.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998854
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.84 E-value=0.26 Score=51.80 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999874
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.82 E-value=0.23 Score=46.12 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
++...|+|.|..||||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 455789999999999999999885443
No 459
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.69 E-value=0.28 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+--.++++|+.|||||||++.|+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 34578999999999999999874
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.56 E-value=0.35 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+++|.+||||||+...|....|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999998866556
No 461
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.53 E-value=1.7 Score=42.35 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..+.|.|++|+|||||+.++.
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999998885
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.45 E-value=0.47 Score=45.62 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+|+|++++|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999865443
No 463
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.45 E-value=0.4 Score=41.64 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
.-|.+.|++|+|||||.-.|+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.39 E-value=0.46 Score=46.03 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999876554
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.29 E-value=0.33 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 478999999999999999885
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.24 E-value=0.39 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++|+|++|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998853
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.07 E-value=0.35 Score=50.94 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++++|+.|||||||++.|.
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 478999999999999999874
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.06 E-value=0.24 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.5
Q ss_pred ceeEEEEEecCCCChHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
+--.++++|+.|||||||++.|+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHh
Confidence 33478999999999999998774
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.95 E-value=0.36 Score=50.05 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||++.|.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999883
No 470
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.81 E-value=1.1 Score=46.78 Aligned_cols=176 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred ccceeEEEEEecCCCChHHHHHHHHHHhCCcchHHHHHHHHHHhhcCccchhhhhhcCCchhhhccccEEeeeeEEEE--
Q 011837 42 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-- 119 (476)
Q Consensus 42 ~~~~~~i~ivG~~d~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g~ti~~~~~~~~-- 119 (476)
.+....+.+.|..|+||||+.-.|....- +.|+.......-. .......-|...........
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA---------------~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~~ 68 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLA---------------EQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIASV 68 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHH---------------HTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTTS
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHH---------------HCCCcEEEEECCC-CcCHHHHhCCcccCCCceeccc
Q ss_pred ----------------------------------------------------------------eCCeEEEEEeCC----
Q 011837 120 ----------------------------------------------------------------TETTRFTILDAP---- 131 (476)
Q Consensus 120 ----------------------------------------------------------------~~~~~~~liDtP---- 131 (476)
...+.+.++|||
T Consensus 69 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~ 148 (589)
T 1ihu_A 69 PGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGH 148 (589)
T ss_dssp TTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHH
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchh
Q ss_pred -----------------------------CCcCcHHHHhhhcc-ccC----EEEEEEECCCCccccccCCCCchHHHHHH
Q 011837 132 -----------------------------GHKSYVPNMISGAS-QAD----IGVLVISARKGEFETGFEKGGQTREHVML 177 (476)
Q Consensus 132 -----------------------------Gh~~f~~~~~~~~~-~aD----~avlVVda~~g~~e~~~~~~~qt~e~l~~ 177 (476)
|...+...+..... .+| .+++|+.+..... ..+++.+..
T Consensus 149 ~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~-------~~~~~~~~~ 221 (589)
T 1ihu_A 149 TIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTL-------QEVARTHLE 221 (589)
T ss_dssp HHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHH-------HHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHH-------HHHHHHHHH
Q ss_pred HHHcCCceEEEEEEccCCCCc----CccHHHHHHHHHHHHHHHHhccCCcCCCeeEEeeecccccccccc
Q 011837 178 AKTLGVTKLLLVVNKMDDHTV----NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 243 (476)
Q Consensus 178 ~~~l~i~~iIvviNK~Dl~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ipvSa~~g~~i~~~ 243 (476)
+...|++..-+|+|+++-... .|.+.+++...+.+..+-..++-- .+..+|.-...-.|+..+
T Consensus 222 L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~~vPl~~~e~~g~~~l 288 (589)
T 1ihu_A 222 LAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGL---PTDTLFLQPVNMVGVSAL 288 (589)
T ss_dssp HHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTS---CEEEEECCSSCCCSHHHH
T ss_pred HHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCC---CEEEecCCCCCCCCHHHH
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.78 E-value=0.37 Score=49.99 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||+..|.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999884
No 472
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.56 E-value=0.52 Score=41.56 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
..+.+.|++|+|||||+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.49 E-value=0.49 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHHHh
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
..|++.|..||||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999999986554
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.39 E-value=0.37 Score=46.31 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..+|+|+.|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 567999999999999999976554
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.23 E-value=0.51 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
...+|+++|++|+||||+...|...
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999887543
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.22 E-value=0.29 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=19.2
Q ss_pred eeEEEEEecCCCChHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
--.++++|+.|||||||++.|+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3478999999999999998774
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.05 E-value=0.44 Score=50.18 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||+..|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999884
No 478
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.03 E-value=0.47 Score=40.72 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
...++.+.|++|+|||||+..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998853
No 479
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.03 E-value=0.55 Score=42.24 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
....+.+.|++|+|||||+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998853
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.98 E-value=0.56 Score=41.75 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
..|+|+|++++|||||.-.|.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999885
No 481
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.61 E-value=0.69 Score=44.15 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
...|+|+|++++|||||...|....+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35689999999999999999965544
No 482
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=84.43 E-value=0.23 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHhC
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
.++++|+.|||||||++.|....+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 779999999999999999866555
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.20 E-value=0.65 Score=42.10 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
-.++++|++|+|||||+-+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999877753
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.20 E-value=0.64 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+|+|++++|||||...|....+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999865443
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.05 E-value=0.48 Score=49.85 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 011837 47 NVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll 66 (476)
.++++|+.|||||||+..|.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47999999999999999874
No 486
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.00 E-value=2.4 Score=37.75 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcCc--HH--HHhhhccc-cCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCceEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSY--VP--NMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f--~~--~~~~~~~~-aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~~iIvviNK~Dl 195 (476)
..+.+.|||+||.-.. .. ....-+.. .+.+|+|+.+..+.. .++...+..++..+++-.=+++|++|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~-------~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI-------NHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcH-------HHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 3578999999985431 10 01111111 234788887755332 345555566666677744578999996
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.91 E-value=0.093 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHh
Q 011837 47 NVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 47 ~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.++|+|+.|||||||+..|....
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35799999999999999986544
No 488
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.90 E-value=0.54 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.1
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 011837 48 VVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 48 i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
.+|+|+.|+|||||++++.+.
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999998553
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.84 E-value=0.39 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=18.1
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 011837 46 LNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll 66 (476)
-.++|+|+.|||||||++.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 368999999999999997654
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.55 E-value=0.38 Score=55.46 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.5
Q ss_pred cceeEEEEEecCCCChHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQIL 66 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll 66 (476)
++--+|+|+|++|||||||+..|+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHh
Confidence 344589999999999999999874
No 491
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=83.40 E-value=0.95 Score=34.48 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEeeEecCCEEE-EecCC--ceEEEEEEEE-CCeeeeec-CCCCeEEEEEeccCccCceeeeEE
Q 011837 295 ESGSVREGDSLL-VMPNK--AQVKVLAIYC-DDNRVRHA-GPGENLRIRLSGIEEEDILSGFVL 353 (476)
Q Consensus 295 ~sG~l~~gd~v~-~~p~~--~~~~V~si~~-~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl 353 (476)
....+.+||.|. +.|.+ ...+|..|.. .+++++.| .||+.+.|.+. ..+..|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEE
Confidence 367889999998 45665 4467778885 47889998 99999998665 235556654
No 492
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=83.33 E-value=0.76 Score=45.62 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCcCcHHHHhhhccccCEEEEEEECCCCccccccCCCCchHHHHHHHHHcCCc----eEEEEEEccCC
Q 011837 121 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT----KLLLVVNKMDD 195 (476)
Q Consensus 121 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~avlVVda~~g~~e~~~~~~~qt~e~l~~~~~l~i~----~iIvviNK~Dl 195 (476)
..+.+.|||||.... ..+..++..+|.+|+|+.++.-.+.+......+..+.+..++..+.+ -++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 357799999999765 34556777999999999875422110000002344455555555543 24668999984
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.26 E-value=0.83 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+|+|++++|||||...|....+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4689999999999999999865544
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.12 E-value=0.63 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.6
Q ss_pred eeEEEEEecCCCChHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQI 65 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~L 65 (476)
--.++++|++|||||||+..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 357899999999999999985
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.11 E-value=0.66 Score=44.86 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHHHhC
Q 011837 46 LNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 46 ~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
..|+|+|++++|||||.-.|....+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5799999999999999999865443
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.11 E-value=0.54 Score=54.25 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHH
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
++--.++++|++|||||||++.|+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcc
Confidence 3445789999999999999998864
No 497
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=83.01 E-value=0.69 Score=45.06 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHHHH
Q 011837 45 HLNVVFIGHVDAGKSTTGGQILF 67 (476)
Q Consensus 45 ~~~i~ivG~~d~GKSTLi~~Ll~ 67 (476)
--.+.|+|++|+|||||+..|..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.00 E-value=0.84 Score=43.16 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=22.9
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHhC
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLSG 70 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~g 70 (476)
+..+.+.+.|++|+|||+|+.++....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456788889999999999999876554
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.98 E-value=0.46 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHHHHH
Q 011837 44 RHLNVVFIGHVDAGKSTTGGQILFL 68 (476)
Q Consensus 44 ~~~~i~ivG~~d~GKSTLi~~Ll~~ 68 (476)
+--.|+++|.+|||||||...|...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999988543
No 500
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.85 E-value=0.78 Score=42.09 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHHHHHHHh
Q 011837 43 KRHLNVVFIGHVDAGKSTTGGQILFLS 69 (476)
Q Consensus 43 ~~~~~i~ivG~~d~GKSTLi~~Ll~~~ 69 (476)
.....+.+.|++|+|||+|+.++....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999985433
Done!