BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011838
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q74E53|RLMN_GEOSL Dual-specificity RNA methyltransferase RlmN OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=rlmN PE=3 SV=1
Length = 360
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 159/339 (46%), Positives = 210/339 (61%), Gaps = 13/339 (3%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 172
+KG+S EL++++ +A ++K LY G +A TD L K+ ++ L E A
Sbjct: 7 IKGLSIDELERFLLGKGKERYRARQIFKWLYQRGATSFAEMTD----LAKELRRDLEETA 62
Query: 173 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 232
LS + + S DGTRK LF LDDG +E+V+IP R T+C+SSQVGCAM C+FC
Sbjct: 63 RISTLSPEALEISRDGTRKYLFRLDDGCSVESVLIP-EEDRNTLCISSQVGCAMACEFCL 121
Query: 233 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 292
TG L R+LT AEIV Q +R + + N+VFMGMGEPL N++NVI+A IM+H
Sbjct: 122 TGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQIMLH 176
Query: 293 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 352
+ GL FS R++TVST+GLVP++++ LAVSLNATTDE+R+ IMPINRKY L +L
Sbjct: 177 DDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVL 236
Query: 353 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 412
++ R K+ EYV+L GVND+ DDAKRL+ L+ IP KINLI FN H G F
Sbjct: 237 LDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSF 295
Query: 413 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
+ + + F L TV R SRG D AACGQL
Sbjct: 296 RSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334
>sp|Q3A2Z4|RLMN_PELCD Dual-specificity RNA methyltransferase RlmN OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rlmN PE=3
SV=1
Length = 371
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 18/363 (4%)
Query: 103 INVLPKKGSRVLLKGMSFTELQQWVR---SHAFRPGQALM-LWKRLYGDDIWAHCTDELE 158
++V + +R+ LK + EL +++ FR GQ + ++ RL D D +
Sbjct: 1 MDVSMDQDTRIDLKNFTLEELTEFLAGMGKERFRAGQVMRWMYHRLVDD------FDAMS 54
Query: 159 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 218
L+K + L + A L+ + S DGTRK LF L+DG IE+V IP + R T+C+
Sbjct: 55 DLSKVLRAELHQRARISRLTPEATEDSRDGTRKYLFRLEDGETIESVRIPMDDNRATLCI 114
Query: 219 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH 278
S+QVGCAM C FC+TG GL R+LT EIV Q A L+ G + N+V MGMGEPLH
Sbjct: 115 STQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAA---LAD--GPVNNIVLMGMGEPLH 169
Query: 279 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 338
N++NV+KA I+ QGL +SPRKVT+ST+GLVPQ+++ LAVSLNATTDEVRN
Sbjct: 170 NLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRN 229
Query: 339 WIMPINRKYKLGLLIETLRE-ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397
+MP+N++Y L L+ R+ LH K ++ FEY+++ VNDS DA+RL+ L+ GI
Sbjct: 230 RLMPVNQRYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKA 287
Query: 398 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 457
K+N+I FN H S+F T+E++ F+ L G R S+G D AACGQL +
Sbjct: 288 KVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLKGKLTV 347
Query: 458 QAP 460
P
Sbjct: 348 SPP 350
>sp|Q39S71|RLMN_GEOMG Dual-specificity RNA methyltransferase RlmN OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=rlmN PE=3 SV=1
Length = 346
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 207/340 (60%), Gaps = 9/340 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 171
++ +K ++ +L ++ +A ++K LY D A E+ L KD ++ L E
Sbjct: 5 KIDIKNLTLDDLIAFLAGKGKERYRARQIFKWLYQKD--ARSFAEMTDLAKDLRRDLEET 62
Query: 172 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 231
A L + + S DGTRK LF L+DG +E+V+IP RTT+C+SSQVGCAM C+FC
Sbjct: 63 AVISDLEPEAMEVSRDGTRKYLFRLEDGNTVESVLIP-EEDRTTLCISSQVGCAMACEFC 121
Query: 232 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291
TG L R+LTA EIV Q RR + + N+VFMGMGEPL N++NV+KA I++
Sbjct: 122 LTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKIIL 176
Query: 292 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 351
H+ GL FS R+VTVSTSGLVP++++ E LAVSLNATTDEVR+ IMP+NR+Y L L
Sbjct: 177 HDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRL 236
Query: 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 411
L++ R K+ EYVM+ G+NDS +DAKRL+ L+ I KINLI FN H G
Sbjct: 237 LLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCS 295
Query: 412 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
F + F + L TV R SRG D AACGQL
Sbjct: 296 FKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQL 335
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1
Length = 342
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 217/341 (63%), Gaps = 9/341 (2%)
Query: 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI--WAHCTDELEGLNKDFKKMLSE 170
V +K + EL++WV+ R +A L++ +YG + W+ C+D L++ F+ L
Sbjct: 4 VCVKDFTLPELEEWVQGIGERSFRARQLFRHVYGRGVRSWSECSD----LSRMFRVQLEH 59
Query: 171 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 230
E ALS+ + DGT K LF L DG IE V+IP + R+T+CVSSQVGCA+ C+F
Sbjct: 60 GVELDALSVLKKEQADDGTSKYLFGLRDGHSIEAVLIP-DLPRSTLCVSSQVGCALGCKF 118
Query: 231 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 290
C TG +G KR+L+AAEIV+Q +R L S ITN+VFMGMGEPL N+++V++A ++
Sbjct: 119 CLTGSLGFKRNLSAAEIVDQVCQVQRDLGSR-SRITNIVFMGMGEPLANLDSVLRAIRVI 177
Query: 291 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 350
G+ FS R++T+ST+GLVPQL++ ES LAVSL+A +E+R +MP+NR Y L
Sbjct: 178 AEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSLHAAENELRAELMPVNRTYPLE 237
Query: 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 410
+L+ R E ++ FEY++L G+ND AK+L+ L+ GI K+NL+ FNPH GS
Sbjct: 238 VLMAACR-EYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNLMPFNPHPGS 296
Query: 411 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
F ++++++ F+ L A T +R SRG + AACGQL
Sbjct: 297 VFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACGQL 337
>sp|A5GEC2|RLMN_GEOUR Dual-specificity RNA methyltransferase RlmN OS=Geobacter
uraniireducens (strain Rf4) GN=rlmN PE=3 SV=1
Length = 343
Score = 276 bits (705), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 203/340 (59%), Gaps = 9/340 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 171
+V +K + EL+ ++ +A ++K LY D A ++ L+KDF++ L +
Sbjct: 3 KVDIKNFTLQELEAYIAGQGKERFRAKQIFKWLYQQD--AREFADMTNLSKDFRQELEKT 60
Query: 172 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 231
A L + + S+DGT+K LF L DG +E+V+IP + RTT+C+SSQVGCAM C+FC
Sbjct: 61 AWISNLDAEAVEASADGTKKYLFRLADGNAVESVLIP-DEDRTTLCISSQVGCAMGCEFC 119
Query: 232 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291
TG L R+LT AEIV Q +R + N+VFMGMGEPL N++NV+ A I+
Sbjct: 120 LTGTFKLTRNLTTAEIVNQVCAVKRQ-----EPVRNIVFMGMGEPLANLKNVVGALKILT 174
Query: 292 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 351
G FS RKVTVSTSGLVP++ + LAVSLNATTDEVR+ IMPINR+Y L
Sbjct: 175 DPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVRDRIMPINRRYPLKE 234
Query: 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 411
L+ + + + EYVM+ GVNDS DDAKRL+ L+ IP K+NLI FN H G
Sbjct: 235 LLAACK-AFPLPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT 293
Query: 412 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
F T + + +F L TV R SRG D AACGQL
Sbjct: 294 FQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQL 333
>sp|A1AL40|RLMN_PELPD Dual-specificity RNA methyltransferase RlmN OS=Pelobacter
propionicus (strain DSM 2379) GN=rlmN PE=3 SV=1
Length = 347
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/348 (45%), Positives = 206/348 (59%), Gaps = 11/348 (3%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 174
LK ++ L+Q++R +A ++K +Y D A E+ ++KD + L A
Sbjct: 7 LKNLTLPALEQFLRGQGKERFRATQVFKWIYQHD--ARSFQEMTNISKDLRAELEAKAYI 64
Query: 175 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 234
L + + DGTRK LF L+DG +E+V+IP + GR T+C+SSQVGCAM C FC TG
Sbjct: 65 SNLEPEAVEVGGDGTRKYLFGLEDGNSVESVLIP-DEGRNTLCISSQVGCAMGCAFCLTG 123
Query: 235 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 294
L R+LT AEIV Q + RR + I N+V MGMGEPLHN++NVI A +IM+
Sbjct: 124 TFRLTRNLTTAEIVNQIMAVRRDVE-----IRNIVMMGMGEPLHNLDNVIPAIHIMIDGN 178
Query: 295 GLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 353
GL S R+VTVST GL P++++ E N LAVSLNATTDE+R+ IMPINR+Y L L+
Sbjct: 179 GLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLKELL 238
Query: 354 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 413
RE KV FEYVML G+ND+ +DAKRL+ L IP K+NLI FN G +F
Sbjct: 239 SACRE-FPLPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGCEFR 297
Query: 414 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGAIQAP 460
T + F L TV R SRG D AACGQL G A + P
Sbjct: 298 SPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAACGQLKGKLDAARQP 345
>sp|B9KQP1|RLMN_RHOSK Dual-specificity RNA methyltransferase RlmN OS=Rhodobacter
sphaeroides (strain KD131 / KCTC 12085) GN=rlmN PE=3
SV=1
Length = 392
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 31/372 (8%)
Query: 102 NINVLPKK---GSRVLLKGMSFTELQQWV-------RSHAFRPGQALMLWKRLYGDDIWA 151
++ LP+K G V + G++ EL + R R GQ W +G +A
Sbjct: 10 DVMTLPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQ-WVYHWGVRDFA 68
Query: 152 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP 208
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 69 QMTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP 121
Query: 209 CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------- 259
GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L
Sbjct: 122 -EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPK 180
Query: 260 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 319
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ +
Sbjct: 181 DETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAE 240
Query: 320 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 379
E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVN
Sbjct: 241 EIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVN 300
Query: 380 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 439
D+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R
Sbjct: 301 DTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTP 360
Query: 440 RGDDQMAACGQL 451
RG+D MAACGQL
Sbjct: 361 RGEDIMAACGQL 372
>sp|Q3IY22|RLMN_RHOS4 Dual-specificity RNA methyltransferase RlmN OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=rlmN1 PE=3 SV=1
Length = 392
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 31/372 (8%)
Query: 102 NINVLPKK---GSRVLLKGMSFTELQQWV-------RSHAFRPGQALMLWKRLYGDDIWA 151
++ LP+K G V + G++ EL + R R GQ W +G +A
Sbjct: 10 DVMTLPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQ-WVYHWGVRDFA 68
Query: 152 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP 208
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 69 QMTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP 121
Query: 209 CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------- 259
GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L
Sbjct: 122 -EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPK 180
Query: 260 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 319
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ +
Sbjct: 181 DETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAE 240
Query: 320 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 379
E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVN
Sbjct: 241 EIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVN 300
Query: 380 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 439
D+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R
Sbjct: 301 DTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTP 360
Query: 440 RGDDQMAACGQL 451
RG+D MAACGQL
Sbjct: 361 RGEDIMAACGQL 372
>sp|A3PFQ4|RLMN_RHOS1 Dual-specificity RNA methyltransferase RlmN OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmN PE=3
SV=1
Length = 392
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 31/372 (8%)
Query: 102 NINVLPKK---GSRVLLKGMSFTELQQWV-------RSHAFRPGQALMLWKRLYGDDIWA 151
++ LP+K G V + G++ EL + R R GQ W +G +A
Sbjct: 10 DVMTLPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQ-WVYHWGVRDFA 68
Query: 152 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP 208
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 69 QMTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP 121
Query: 209 CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------- 259
GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L
Sbjct: 122 -EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPK 180
Query: 260 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 319
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ +
Sbjct: 181 DETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAE 240
Query: 320 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 379
E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVN
Sbjct: 241 EIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVN 300
Query: 380 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 439
D+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R
Sbjct: 301 DTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTP 360
Query: 440 RGDDQMAACGQL 451
RG+D MAACGQL
Sbjct: 361 RGEDIMAACGQL 372
>sp|A4WNI9|RLMN_RHOS5 Dual-specificity RNA methyltransferase RlmN OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmN PE=3
SV=1
Length = 392
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 226/371 (60%), Gaps = 29/371 (7%)
Query: 102 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAH 152
++ LP+K G + + G++ EL + + QA M +W+ +Y G +A
Sbjct: 10 DVMTLPRKLPEGGPLNIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQ 69
Query: 153 CTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPC 209
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 70 MTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP- 121
Query: 210 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------- 260
GR T+CVSSQVGC + C FC+TG L R+LTA EIV Q + R L
Sbjct: 122 EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWPERGAPKD 181
Query: 261 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 320
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ + E
Sbjct: 182 ETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEE 241
Query: 321 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 380
C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML G+ND
Sbjct: 242 IGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGIND 301
Query: 381 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 440
S DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R R
Sbjct: 302 SDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPR 361
Query: 441 GDDQMAACGQL 451
G+D MAACGQL
Sbjct: 362 GEDIMAACGQL 372
>sp|Q1D6I6|RLMN2_MYXXD Dual-specificity RNA methyltransferase RlmN 2 OS=Myxococcus xanthus
(strain DK 1622) GN=rlmN2 PE=3 SV=1
Length = 378
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 210/362 (58%), Gaps = 16/362 (4%)
Query: 107 PKKGSRVLLKGMSFTELQQWVRSH----AFRPGQALMLWKRLYGDDIWAHCTDELEGLNK 162
P V + +S L ++V AFR Q + W G A DE+ L+K
Sbjct: 18 PAPAKLVDVASLSLEALSRFVTEELGERAFRAPQ-IYRWLHQRG----ATSFDEMTDLSK 72
Query: 163 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 222
++ L AE L L S+DGT K + DG IE+V +P R T+CVS+QV
Sbjct: 73 VLREKLRARAEIVPLVKDCELRSTDGTIKYRWKTRDGRYIESVYMPTE-DRRTLCVSTQV 131
Query: 223 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPL 277
GCAM C FC TG MGLKR+LT +EIV Q R + G ++N+VFMGMGEPL
Sbjct: 132 GCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETLRPLSNLVFMGMGEPL 191
Query: 278 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 337
HN EN+ A +I+ E G +FS R +TVST GLVP +++F E++ LA+SLNA+TDE R
Sbjct: 192 HNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQR 251
Query: 338 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397
+ MP+NRK+ + L++ R + + ++ FEYV++ G ND+ +DA RLI L++GIP
Sbjct: 252 SKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPV 310
Query: 398 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 457
K+NLI +N + G F T +E+ EFR ILA ++R +RG D ACGQL N G
Sbjct: 311 KVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLANRGET 370
Query: 458 QA 459
QA
Sbjct: 371 QA 372
>sp|A1B4Z8|RLMN_PARDP Dual-specificity RNA methyltransferase RlmN OS=Paracoccus
denitrificans (strain Pd 1222) GN=rlmN PE=3 SV=1
Length = 391
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 222/364 (60%), Gaps = 27/364 (7%)
Query: 106 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEG 159
LP+ R L+ G++ +L + + QA M +W+ +Y G +A T+
Sbjct: 17 LPETAGRNLV-GLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTN---- 71
Query: 160 LNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 216
L KD++ +L+E+ E ++L +I+T S+DGTRK L + G +ETV IP R T+
Sbjct: 72 LAKDYRALLAENFE---IALPEIVTRQISADGTRKYLLRISGGHEVETVYIP-EENRGTL 127
Query: 217 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGSITN 267
C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L E ++N
Sbjct: 128 CISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKPGAPKDETRLVSN 187
Query: 268 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 327
VV MGMGEPL+N +NV A +++ +G+ S R++T+STSG+VP++ + E C LAV
Sbjct: 188 VVLMGMGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAV 247
Query: 328 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 387
S +ATTDE R+ ++P+NRK+ + L+ LRE N+ ++ FEYVML GVNDS +DA+R
Sbjct: 248 SFHATTDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARR 307
Query: 388 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 447
L+ L++GIP K+NLI FN GS + + E++ F +I+ AG +R RG+D MAA
Sbjct: 308 LVRLIRGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAA 367
Query: 448 CGQL 451
CGQL
Sbjct: 368 CGQL 371
>sp|B6J7Q9|RLMN_COXB1 Dual-specificity RNA methyltransferase RlmN OS=Coxiella burnetii
(strain CbuK_Q154) GN=rlmN PE=3 SV=1
Length = 370
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 207/344 (60%), Gaps = 10/344 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
++ L +S TELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSETELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 288
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 289 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 408
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 409 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>sp|B6IZM7|RLMN_COXB2 Dual-specificity RNA methyltransferase RlmN OS=Coxiella burnetii
(strain CbuG_Q212) GN=rlmN PE=3 SV=1
Length = 370
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 288
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 289 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 408
L LI R+ + V FEYVM+ G+ND DAKRLI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIRLLADVPCKINLIPFNSFQ 296
Query: 409 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>sp|A0LBZ1|RLMN_MAGSM Dual-specificity RNA methyltransferase RlmN OS=Magnetococcus sp.
(strain MC-1) GN=rlmN PE=3 SV=1
Length = 356
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 204/334 (61%), Gaps = 8/334 (2%)
Query: 133 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 192
+P +A LW L+ A DE+ L+ DF++ LS + + S DGT K
Sbjct: 27 KPFRARQLWSWLHVK--LAQHLDEMSDLSIDFRRKLSALSTPLRPEVSTHQISRDGTEKW 84
Query: 193 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAV 252
L L DG IETV IP + R T+C+SSQVGC ++C FC+TG G R+LT +EIV+Q +
Sbjct: 85 LLRLSDGQQIETVYIPEDE-RGTLCISSQVGCTLSCPFCHTGAQGFARNLTPSEIVQQVL 143
Query: 253 FARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 312
FARR L++ +TN+V MGMGEPL+N E V A I++ + GL F RKVT+ST+GL+P
Sbjct: 144 FARRTLAARDKRVTNIVLMGMGEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLP 203
Query: 313 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL-GLLIETLREELHFKNNYKVLFE 371
+++Q E LA+SL+A D +R+ ++P+N+KY L L TLR L K+ +V +E
Sbjct: 204 KMEQAGRELGVNLAISLHAVRDTLRDELVPLNKKYNLQALRAATLRYPL--KSGRRVTWE 261
Query: 372 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 431
YVML GVNDS DDA+ + ++ IP KINLI FNP G + ++ ++ F+ IL AG
Sbjct: 262 YVMLHGVNDSEDDARLFVSFLKDIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAG 321
Query: 432 CTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVP 465
+R RG+D AACGQL GA+Q R P
Sbjct: 322 FVTVIRDRRGEDIDAACGQL--KGAVQGARPRPP 353
>sp|Q83C77|RLMN_COXBU Dual-specificity RNA methyltransferase RlmN OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=rlmN PE=3 SV=1
Length = 370
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 288
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 289 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 408
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 409 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>sp|A9NDW2|RLMN_COXBR Dual-specificity RNA methyltransferase RlmN OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=rlmN PE=3 SV=1
Length = 370
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 288
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 289 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 408
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 409 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>sp|A9KFV0|RLMN_COXBN Dual-specificity RNA methyltransferase RlmN OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=rlmN PE=3 SV=1
Length = 370
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 112 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 288
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 289 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 408
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 409 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>sp|Q16DM2|RLMN_ROSDO Dual-specificity RNA methyltransferase RlmN OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=rlmN PE=3
SV=1
Length = 394
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 218/366 (59%), Gaps = 20/366 (5%)
Query: 102 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 154
+++ +P+K V L G++ ++ + + QA M +W+ +Y W
Sbjct: 10 DVHTIPRKLPDGPVNLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 155 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 214
D + L+K ++ L E + S DGTRK L + G +E V IP + GR
Sbjct: 67 DLMTNLSKAYRAQLKEKFVVEVPEVVTRQVSEDGTRKYLVRIAGGHEVEVVYIP-DEGRG 125
Query: 215 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------I 265
T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E+G+ +
Sbjct: 126 TLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPEIGAPKDETRLL 185
Query: 266 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 325
+N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQL 245
Query: 326 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 385
AVS +ATTD+VR+ ++PIN+++ + +L+E LR N+ ++ FEYVML GVNDS +DA
Sbjct: 246 AVSFHATTDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDA 305
Query: 386 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 445
+RL+ L+ GIP KINLI FN G+ + +++ ++ F +I+ AG +R RG+D M
Sbjct: 306 RRLVKLIDGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIM 365
Query: 446 AACGQL 451
AACGQL
Sbjct: 366 AACGQL 371
>sp|Q6ALW1|RLMN_DESPS Dual-specificity RNA methyltransferase RlmN OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=rlmN PE=3
SV=1
Length = 362
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 215/352 (61%), Gaps = 17/352 (4%)
Query: 111 SRVLLKGMSFTELQQWVR---SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 167
++ LK +S +L ++ AFR G+ +M W LY ++ +++ L K F+K+
Sbjct: 10 EKIDLKNLSQDQLVEFAEKLGQPAFR-GRQIMSW--LYRPEVRDF--EQMTDLAKVFRKL 64
Query: 168 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 227
L+E++ F I + DG K F L DG VIETV+IP R T+C+SSQVGCAM
Sbjct: 65 LAENSFFSHFDDPIIERAKDGCVKFGFRLHDGHVIETVLIP-EPDRNTLCISSQVGCAMK 123
Query: 228 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHNV 280
C FC TG MG R+LT +EIV Q AR L++E +TNVV+MGMGEPL+N+
Sbjct: 124 CTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPADKLIGPDRVTNVVYMGMGEPLNNL 183
Query: 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 340
ENV+ + +I+ ++GL + R++TVST G+V + + E+ LA+SL+A D+ R+ +
Sbjct: 184 ENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAISLHAVDDKTRDML 243
Query: 341 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 400
MP+N +Y L L+E R K +++FEY+MLAG+NDS +A+ L +Q IPCKIN
Sbjct: 244 MPVNNRYPLDELLEACRTYPMGKRR-RIMFEYIMLAGINDSDTEARTLARKLQEIPCKIN 302
Query: 401 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
LI +N G + ++++ F+NIL A +VF+R SRG+D AACGQL
Sbjct: 303 LIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAACGQLA 354
>sp|Q6G1C0|RLMN_BARQU Dual-specificity RNA methyltransferase RlmN OS=Bartonella quintana
(strain Toulouse) GN=rlmN PE=3 SV=1
Length = 409
Score = 254 bits (650), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 211/371 (56%), Gaps = 26/371 (7%)
Query: 104 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 159
NV+ KK S+ L G+S E+ + +++ Q M LW LY + DE+
Sbjct: 20 NVVVKKRSKRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGV--SNFDEILN 77
Query: 160 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML---DDG--LVIETVVIPCNRGRT 214
++K ++ML H + S DGTRK L +DG + IETV IP GR
Sbjct: 78 ISKPIREMLKNHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIP-EEGRG 136
Query: 215 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 260
T+C+SSQVGC + C FCYTG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPV 196
Query: 261 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 320
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEE 256
Query: 321 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 380
LAVSL+A D +R+ ++PIN+KY L LLI+ R N ++ FEYVML G+ND
Sbjct: 257 IGVMLAVSLHAVHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGIND 316
Query: 381 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 440
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 441 GDDQMAACGQL 451
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>sp|Q2RP22|RLMN_RHORT Dual-specificity RNA methyltransferase RlmN OS=Rhodospirillum
rubrum (strain ATCC 11170 / NCIB 8255) GN=rlmN PE=3 SV=1
Length = 428
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 204/354 (57%), Gaps = 13/354 (3%)
Query: 106 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKD 163
+P+ + V L G+S E+ +R +P +A LW +Y G+ ++ T L
Sbjct: 41 IPQNPAPVNLVGLSREEIAALLRDMGEKPFRAKQLWHWVYHRGETDFSAMTT----LGTP 96
Query: 164 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 223
+ L+E + S DGTRK L DG ETV IP + R +CVSSQVG
Sbjct: 97 LRAKLAETCVVARPHVVREQRSEDGTRKWLLRFPDGNEAETVYIPED-DRGALCVSSQVG 155
Query: 224 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGSITNVVFMGMGEPL 277
C + C+FC+TG L R+LTA EIV Q + AR + E ++N+V MGMGEPL
Sbjct: 156 CTLTCRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTDESRQLSNIVLMGMGEPL 215
Query: 278 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 337
+N +NV KA I++ +G+ S R++T+STSG+VP +++ E LAVSL+A DE+R
Sbjct: 216 YNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAARDEIR 275
Query: 338 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397
+ IMPINRKY L L+ RE N ++ FEYVML GVNDS DA+ LI LV+G+PC
Sbjct: 276 DEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLVEGVPC 335
Query: 398 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
K NLI FNP GS F + F NIL AG T +R+ RG D +AACGQL
Sbjct: 336 KFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQL 389
>sp|B4RCA4|RLMN_PHEZH Dual-specificity RNA methyltransferase RlmN OS=Phenylobacterium
zucineum (strain HLK1) GN=rlmN PE=3 SV=1
Length = 385
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 107 PKKGSRVLLKGMSFTELQQ-WVRSHAFRPGQALMLWKRLYGDDIWAH--CTDELEGLNKD 163
P SR L GM+ EL V RP +A M +L+ W H + E +
Sbjct: 14 PLAPSRPNLSGMTRAELAACLVELGVVRPEKAKMRASQLWR---WMHHYGVTDFEKMTDV 70
Query: 164 FKKMLSEHAEFRALSLKDIL---TSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVS 219
K+ + AE A+S ++ S DGTRK L + G+ +ETV IP + GR +CVS
Sbjct: 71 AKETRAALAEVCAISRPQVVERQVSKDGTRKWLIRMAPGIEVETVYIP-DVGRAGALCVS 129
Query: 220 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 274
SQVGC +NC FC+TG L R+LTAAEIV Q AR L E ++N+VFMGMG
Sbjct: 130 SQVGCTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPSPKEDRRLSNIVFMGMG 189
Query: 275 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 334
EPL+N++NV A +I+ +G+ S R++TVSTSG+VP+L + LA+SL+AT D
Sbjct: 190 EPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAISLHATND 249
Query: 335 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 394
E+R ++P+NRKY + L+ +R N+ +V FEYVML GVNDS +AK L+ L++G
Sbjct: 250 ELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKALVNLLKG 309
Query: 395 IPCKINLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 451
+P KINLI FNP GSQ+ +D IE F +L AG +R RG D +AACGQL
Sbjct: 310 VPAKINLIPFNPWPGSQYE-CSDWGTIERFAAVLNRAGYASPIRTPRGRDILAACGQL 366
>sp|Q9JZ42|RLMN_NEIMB Dual-specificity RNA methyltransferase RlmN OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmN PE=3 SV=1
Length = 364
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|A9LZN6|RLMN_NEIM0 Dual-specificity RNA methyltransferase RlmN OS=Neisseria
meningitidis serogroup C (strain 053442) GN=rlmN PE=3
SV=1
Length = 364
Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|Q7NS85|RLMN_CHRVO Dual-specificity RNA methyltransferase RlmN OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rlmN PE=3 SV=1
Length = 364
Score = 251 bits (642), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 146/330 (44%), Positives = 194/330 (58%), Gaps = 11/330 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q + ++ DD D + L K + L E AE R SL SSDGTRK
Sbjct: 25 FRAKQVMRWMHQMAEDDF-----DAMTDLAKSLRAKLHERAEVRVPSLMTGQASSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP + R T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + ++NVV MGMGEPL N +NV+ A IM+ + G S R+VT+STS
Sbjct: 139 WWANKAMGVTPKNERVVSNVVMMGMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
GLVPQ+ + E ALAVSL+A D +R+ I+PIN+KY L L+ R L +
Sbjct: 199 GLVPQMDRLREECPVALAVSLHAPNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML GVND + A++L+ LV+ +PCK NLI FNP S + +++ + FR IL
Sbjct: 259 TFEYVMLDGVNDRPEHARQLLELVRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 458
G V +R +RGDD AACGQL G +Q
Sbjct: 319 EQGYVVTVRKTRGDDIDAACGQLA--GQVQ 346
>sp|A1KUD6|RLMN_NEIMF Dual-specificity RNA methyltransferase RlmN OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=rlmN PE=3 SV=1
Length = 364
Score = 251 bits (642), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|A8LNF0|RLMN_DINSH Dual-specificity RNA methyltransferase RlmN OS=Dinoroseobacter
shibae (strain DFL 12) GN=rlmN PE=3 SV=2
Length = 394
Score = 251 bits (642), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 140 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 199
+W+ LY + +++ L K ++ +L++ E + S DGTRK L + G
Sbjct: 55 IWQWLYERGV--RDFNDMTNLAKPYRALLADQFEIAVPEVVSRHVSEDGTRKYLVRIAGG 112
Query: 200 LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL- 258
+E V IP R T+CVSSQVGC + C FC+TG L R+LTA EIV Q + AR L
Sbjct: 113 HEVEVVYIP-EEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLG 171
Query: 259 ---------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 309
+E ++N+V MGMGEPL+N E V A I + +G+ S R++T+STSG
Sbjct: 172 EWPLPGRNPKNETRLLSNIVLMGMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSG 231
Query: 310 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369
+VP++ + E C LAVS +ATTDEVR+ ++PIN+++ + L++ LR+ N+ ++
Sbjct: 232 VVPEIARTAEEIGCMLAVSFHATTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERIT 291
Query: 370 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 429
FEYVML GVNDS +DA+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+
Sbjct: 292 FEYVMLKGVNDSDEDARRLVELIKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYK 351
Query: 430 AGCTVFLRLSRGDDQMAACGQL 451
AG +R RG+D MAACGQL
Sbjct: 352 AGYASPIRTPRGEDIMAACGQL 373
>sp|A1ISB3|RLMN_NEIMA Dual-specificity RNA methyltransferase RlmN OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmN PE=3 SV=1
Length = 364
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|A5WGQ4|RLMN_PSYWF Dual-specificity RNA methyltransferase RlmN OS=Psychrobacter sp.
(strain PRwf-1) GN=rlmN PE=3 SV=1
Length = 403
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 215/360 (59%), Gaps = 19/360 (5%)
Query: 107 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDF 164
P ++ + GM+ +L + + +P +A + K +Y + TD ++ L+K
Sbjct: 18 PNAPTKTNILGMNQEQLGAYFKHIGEKPFRATQVMKWIYQHGV----TDFAQMTNLSKGL 73
Query: 165 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN----RGRTTVCVSS 220
++ LSE A + S DGTRK +F + G ++ETV+IP + GR T+C+SS
Sbjct: 74 REKLSEQACIELPEVMHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISS 133
Query: 221 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ-----AVFARRLLSSE-VGSITNVVFMGMG 274
QVGCA++C FC TG+ G +R LTAAEI+ Q A + + S+E ++TNVV MGMG
Sbjct: 134 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYMEGVDSTEWQNNVTNVVMMGMG 193
Query: 275 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 334
EPL N V+ + +M+ + S R+VT+STSG+VP++ + + + ALA+SL+A D
Sbjct: 194 EPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALAISLHAPND 253
Query: 335 EVRNWIMPINRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGL 391
E+RN ++PIN+KY L LI + +H N V EYVMLAGVNDS + A++L+ L
Sbjct: 254 ELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQLVAL 313
Query: 392 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
+ G+P KINLI FNP + + +++ ++ F NIL AG +R +RGDD AACGQL
Sbjct: 314 LDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQL 373
>sp|A7HCD6|RLMN_ANADF Dual-specificity RNA methyltransferase RlmN OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=rlmN PE=3 SV=1
Length = 377
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/365 (42%), Positives = 211/365 (57%), Gaps = 20/365 (5%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 172
L+ + L++ V + RP +A L W + G A DEL + + + L+E
Sbjct: 16 LRSLPLDRLERLVAALGERPFRARQLHRWLQQKG----AASLDELTDVPRALRAALAEAT 71
Query: 173 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 232
L S DGT K + DG ++E+V +P R T+CVSSQVGCA+ C FC
Sbjct: 72 TLTTLERATEQRSVDGTIKWTWRTHDGKLVESVYMP-EPDRRTLCVSSQVGCAVGCTFCL 130
Query: 233 TGRMGLKRHLTAAEIVEQAVFA-RRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 287
TG MGL R+LT EIVEQ A RR++ G +TN+VFMGMGEPL N ++ A
Sbjct: 131 TGTMGLARNLTPGEIVEQVHRANRRIVELGEGQGPRPLTNLVFMGMGEPLANYRSLKVAL 190
Query: 288 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 347
++++ E G +FS R VTVSTSGLVP +++ E+ LA+SLNATTD R+ +MPINR+Y
Sbjct: 191 DLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRY 250
Query: 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 407
L L+E R +N ++ FEYV+L GVNDS +DA RL LV+GIP K+NLI +N +
Sbjct: 251 PLAQLLEACR-SFPIRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNAN 309
Query: 408 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL---GNPG----AIQAP 460
G + E+++EF+ LA T +R +RG D AACGQL G PG P
Sbjct: 310 PGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAEGGPGDPRRPAPPP 369
Query: 461 LLRVP 465
L R+P
Sbjct: 370 LTRLP 374
>sp|B4RMG2|RLMN_NEIG2 Dual-specificity RNA methyltransferase RlmN OS=Neisseria
gonorrhoeae (strain NCCP11945) GN=rlmN PE=3 SV=1
Length = 364
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 200/341 (58%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML GVND A LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
A V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAEFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|Q5F911|RLMN_NEIG1 Dual-specificity RNA methyltransferase RlmN OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rlmN PE=3
SV=1
Length = 364
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 200/341 (58%), Gaps = 12/341 (3%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 252 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 309 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428
FEYVML GVND A LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQ 318
Query: 429 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 469
A V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAEFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>sp|Q0BWY9|RLMN_HYPNA Dual-specificity RNA methyltransferase RlmN OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rlmN PE=3 SV=1
Length = 387
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 200/348 (57%), Gaps = 15/348 (4%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALML------WKRLYGDDIWAHCTDELEGLNKDFKKML 168
L G+S L+ + + P A M W +G +A TD + KD + L
Sbjct: 20 LTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTD----IAKDLRAQL 75
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
+E E + D S DGT+K L G+ E+V IP +CVSSQVGC +NC
Sbjct: 76 AEKFEVERPEIADHQVSRDGTQKWLTRYGPGIEGESVYIPDVGKAGALCVSSQVGCTLNC 135
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI-----TNVVFMGMGEPLHNVENV 283
FC+TG L R+LTAAEIV+Q + AR LS SI TN+VFMGMGEPL+N++NV
Sbjct: 136 TFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSSIEERRLTNIVFMGMGEPLYNLDNV 195
Query: 284 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 343
+A + + G+ R++TVST+G+ P++ + + LA+SL+AT +++RN ++P+
Sbjct: 196 AEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLHATNNDLRNELVPL 255
Query: 344 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403
NRKY + L + +R N +V FEYVML G+ND+ +A+ L+ L++G+P KINLI
Sbjct: 256 NRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVKLMKGVPSKINLIP 315
Query: 404 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
FNP GS + + E + EF +L AG +R RG D +AACGQL
Sbjct: 316 FNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQL 363
>sp|Q28VS6|RLMN_JANSC Dual-specificity RNA methyltransferase RlmN OS=Jannaschia sp.
(strain CCS1) GN=rlmN PE=3 SV=2
Length = 392
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 202/335 (60%), Gaps = 18/335 (5%)
Query: 128 RSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSD 187
+ R GQ +W+ LY + + + L+KD++ ML+E + S+D
Sbjct: 45 KQAKMRTGQ---IWQWLYQKGVRDFAS--MTNLSKDYRAMLAETFVADVPEVVSRQVSAD 99
Query: 188 GTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 246
GTRK L + G +E V IP +RG T+C+SSQVGC + C FC+TG L R+LTA E
Sbjct: 100 GTRKYLVRIAGGHEVEVVYIPEVDRG--TLCISSQVGCTLTCSFCHTGTQKLVRNLTAGE 157
Query: 247 IVEQAVFARRLLSSEV----GS------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 296
I+ Q + AR L V GS ++N+V MGMGEPL+N ENV A I + +G+
Sbjct: 158 IIGQVMLARDDLDEWVPTGEGSDAKPRLVSNIVLMGMGEPLYNFENVRDAMKIAMDPEGI 217
Query: 297 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 356
S R++T+STSG+VP++ + E C LAVS +ATTD+VR+ ++PIN+++ + L++ L
Sbjct: 218 SLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHATTDDVRDKLVPINKRWPIADLLDAL 277
Query: 357 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 416
R+ N+ ++ FEYVML VNDS DA+RL+ L++GIP KINLI FN G+ + +
Sbjct: 278 RDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLIKGIPAKINLIPFNEWPGAPYERSD 337
Query: 417 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
++ F +I+ AG +R RG+D MAACGQL
Sbjct: 338 WARIEAFADIIYKAGYASPIRTPRGEDIMAACGQL 372
>sp|A1TZP7|RLMN_MARAV Dual-specificity RNA methyltransferase RlmN OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rlmN
PE=3 SV=1
Length = 369
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 204/349 (58%), Gaps = 13/349 (3%)
Query: 110 GSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 166
+V L GM +L+ + + FR Q L W G D + D++ ++K ++
Sbjct: 5 AEKVNLLGMPKAKLEAFFETLGEKRFRAQQVLQ-WMHQRGVDDF----DQMTNMSKSLRE 59
Query: 167 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 226
L E AE R + TS DGTRK + +D+G +ETV+IP + R T+CVSSQ+GC++
Sbjct: 60 QLKEVAEIRGPEVVYDETSKDGTRKWVMRMDNGNSVETVLIP-DGERGTLCVSSQIGCSL 118
Query: 227 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---SSEVGSITNVVFMGMGEPLHNVENV 283
+C FC TG+ G R+LTAAEI+ Q ARR ITNVV MGMGEPL N ENV
Sbjct: 119 DCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPNDRPITNVVMMGMGEPLLNFENV 178
Query: 284 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 343
+ A N+M+ + S R+VT+STSG+VP L + ++ +LA+SL+A DE+RN ++P+
Sbjct: 179 VDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLHAPNDELRNQLVPL 238
Query: 344 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 402
N+KY + L+ R L + K EY ++ GVND + A+ L+ L++G+PCKINLI
Sbjct: 239 NKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLKGLPCKINLI 298
Query: 403 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
FNP S F + F+ +L AG +R +RGDD AACGQL
Sbjct: 299 PFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACGQL 347
>sp|Q0ATR3|RLMN_MARMM Dual-specificity RNA methyltransferase RlmN OS=Maricaulis maris
(strain MCS10) GN=rlmN PE=3 SV=1
Length = 396
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 212/359 (59%), Gaps = 12/359 (3%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 170
L GM+ EL+ +A M LW+ +Y + + DE+ ++KD + ++++
Sbjct: 28 LAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSF--DEMTNISKDLRAVIAD 85
Query: 171 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 230
L D S DGTRK L L G+ ETV IP +CVSSQVGC +NC F
Sbjct: 86 KYALHRPKLIDRQVSVDGTRKYLIELAPGVECETVFIPDVARSGALCVSSQVGCTLNCTF 145
Query: 231 CYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHNVENVIK 285
C+TG L R+LTAAEIV Q + AR L S+E ITN+VFMGMGEPL+N+++V
Sbjct: 146 CHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNENRKITNIVFMGMGEPLYNLDHVAT 205
Query: 286 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 345
+ +I+ +G+ S R+ TVSTSG+VP++++ + LA+SL+AT D +R+ ++P+N+
Sbjct: 206 SIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHATNDTLRDELVPLNK 265
Query: 346 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 405
KY L L+ +R N+ +V FEYVML GVNDS +AK L+ L++GIP KINLI FN
Sbjct: 266 KYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLLKGIPAKINLIPFN 325
Query: 406 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGAIQAPLLR 463
P S + + +++ F +++ AG +R RG D AACGQL ++A +LR
Sbjct: 326 PWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQLRSESQKVKASVLR 384
>sp|Q2W897|RLMN_MAGSA Dual-specificity RNA methyltransferase RlmN OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=rlmN PE=3
SV=2
Length = 456
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 206/350 (58%), Gaps = 13/350 (3%)
Query: 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKML 168
S+ L G+S +L + S +P +A LW +Y G+ +A T ++K L
Sbjct: 85 SKTNLIGLSRDQLIAEMASIGEKPFRAKQLWHWMYNRGETDFAKMTS----ISKSMHGAL 140
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMN 227
+E R + L S+D TRK L DDG ETV IP + R VC+S+QVGC +
Sbjct: 141 AERYVVRRPGVTKELISADTTRKWLLKFDDGHEAETVYIPDADEERGAVCISTQVGCTLT 200
Query: 228 CQFCYTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVGS--ITNVVFMGMGEPLHNVE 281
C+FC+TG L R+L+AAEIV Q + AR + + G ++N+V MGMGEPL+N E
Sbjct: 201 CRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFE 260
Query: 282 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 341
NV A I + +G+ S R++T+STSG+VP +K+ LAVSL+A TDE+R+ IM
Sbjct: 261 NVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSLHAVTDEIRDRIM 320
Query: 342 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 401
PIN+KY L L++ RE N ++ FEY+ML G+NDS DA+ L+ LV+G+P K NL
Sbjct: 321 PINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALLKLVKGLPAKFNL 380
Query: 402 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
I FNP GS+F + F +IL AG + +R+ RG D +AACGQL
Sbjct: 381 IPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACGQL 430
>sp|Q5WWH4|RLMN_LEGPL Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Lens) GN=rlmN PE=3 SV=1
Length = 382
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 207/351 (58%), Gaps = 19/351 (5%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 169
+V L ++ +L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYLQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 170 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 225
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 226 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 281
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKKITNVVMMGMGEPLLNFD 175
Query: 282 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 341
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 342 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 401
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 402 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>sp|Q5FUA9|RLMN_GLUOX Dual-specificity RNA methyltransferase RlmN OS=Gluconobacter
oxydans (strain 621H) GN=rlmN PE=3 SV=1
Length = 407
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 203/348 (58%), Gaps = 16/348 (4%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY---GDDIWAHCTDELEGLNKDFKKMLSEH 171
L G+S EL + +P +A LW +Y D A T + K + L+EH
Sbjct: 50 LVGLSREELAALMTEIGEKPFRAKQLWHWIYHQGATDFSAMTT-----IAKPMQAKLAEH 104
Query: 172 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQF 230
+ TS D TRK LF DG ETV IP R R VC+SSQVGC ++C F
Sbjct: 105 FVVSRPTTATEQTSVDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTF 164
Query: 231 CYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGS-ITNVVFMGMGEPLHNVENV 283
C+TG L R+L AEIV Q + AR S+++ ++ +V MGMGEPL+N ENV
Sbjct: 165 CHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSADMPRYLSTIVLMGMGEPLYNYENV 224
Query: 284 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 343
KA I++ +G+ S R++T+STSG+VP + + +E LA+SL+A T+E+R+ I+P+
Sbjct: 225 AKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVPL 284
Query: 344 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403
NRKY + LI R N+ ++ FEY+ML GVNDS DA+ L+ L++ +P K+NLI
Sbjct: 285 NRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIRDLPAKVNLIP 344
Query: 404 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
FNP GS F P+T +++ +F NI+ AG +R RG D +AACGQL
Sbjct: 345 FNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACGQL 392
>sp|B1M1U6|RLMN_METRJ Dual-specificity RNA methyltransferase RlmN OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rlmN PE=3 SV=2
Length = 424
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 206/369 (55%), Gaps = 34/369 (9%)
Query: 106 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 165
L + + L GM E R R GQ + W G +A T+ + K K
Sbjct: 37 LTRDALKAQLIGMGVPE-----RESRMRAGQ-VWHWVNFRGASDFAEMTN----VGKALK 86
Query: 166 KMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVIPCNRGRTTVC 217
L+EH + S DGTRK L + + G IE V IP R T+C
Sbjct: 87 AQLAEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIP-GPDRGTLC 145
Query: 218 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVG 263
VSSQVGC + C FC+TG L R+L+AAEIV+Q V AR L S EVG
Sbjct: 146 VSSQVGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVG 205
Query: 264 S-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 322
+TN+VFMGMGEPL+N++ V+ A +M ++GL S R++TVSTSG+VPQ+ + ++N
Sbjct: 206 RLVTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQAN 265
Query: 323 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 382
LA+SL+A D++R+ ++P+NRKY + L+ R N ++ FEYVML GVNDS
Sbjct: 266 AMLAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSD 325
Query: 383 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442
DA+ L+ L++GIP KINLI FNP GS++ + +++ F I+ AG +R RG
Sbjct: 326 ADARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGR 385
Query: 443 DQMAACGQL 451
D +AACGQL
Sbjct: 386 DILAACGQL 394
>sp|Q5ZV93|RLMN_LEGPH Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=rlmN PE=3 SV=2
Length = 382
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 169
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 170 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 225
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 226 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 281
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFD 175
Query: 282 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 341
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 342 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 401
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 402 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>sp|A7HSW7|RLMN_PARL1 Dual-specificity RNA methyltransferase RlmN OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rlmN PE=3 SV=1
Length = 399
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 196/334 (58%), Gaps = 20/334 (5%)
Query: 132 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191
R GQ +W LY + + L+K+ + L++ + L + S DGTRK
Sbjct: 48 MRAGQ---IWNGLYNRGFTDF--ERMTTLSKELRGKLADAFDISRLEIVTEQKSVDGTRK 102
Query: 192 ILFMLDDGL------VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 245
L L G+ +ETV IP GR T+CVSSQVGC + C FC+TG L R+LTA
Sbjct: 103 WLLRLPSGIPGVPGPEVETVYIP-EEGRGTLCVSSQVGCTLTCTFCHTGTQKLVRNLTAG 161
Query: 246 EIVEQAVFARRLL--------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 297
EIV Q + AR L +SE ITN+V MGMGEPL+N ENV A ++ +GL
Sbjct: 162 EIVGQILLARDALGEWPDGGRNSEDRLITNIVMMGMGEPLYNFENVRDALEVVSDGEGLS 221
Query: 298 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 357
S R++T+STSG+VP +++ E C LA+SL+A DE RN ++P+N+KY + L+E R
Sbjct: 222 LSKRRITLSTSGVVPMIERAGEEIGCMLAISLHAVDDETRNRLVPLNKKYPIAELLEACR 281
Query: 358 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 417
N ++ FEYVML GVNDS +DAK L+ L++ IP KINLI FNP GS + +
Sbjct: 282 NYPGVSNARRITFEYVMLKGVNDSLEDAKALVRLLKHIPAKINLIPFNPWPGSPYECSDW 341
Query: 418 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
E++ +F +++ AG +R RG D MAACGQL
Sbjct: 342 EQIEKFADVVNRAGYASPVRTPRGRDIMAACGQL 375
>sp|B1ZG98|RLMN_METPB Dual-specificity RNA methyltransferase RlmN OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=rlmN PE=3 SV=1
Length = 425
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 194/332 (58%), Gaps = 23/332 (6%)
Query: 140 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 196
+W LY A E+ + K K L+EH + S DGTRK L +
Sbjct: 67 IWHWLYVRG--AREFSEMTNVGKGLKAQLAEHFTLDRPEVVTEQVSRDGTRKWLLRMAPT 124
Query: 197 -----DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 251
+ G IE V IP + R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q
Sbjct: 125 GAHDHNRGAEIECVYIPGD-DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVSQL 183
Query: 252 VFARRLLSS-----------EVGS-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 299
V AR L EVG +TN+VFMGMGEPL+N++ VI A +M ++GL S
Sbjct: 184 VVARDALGDFTGQMPGKDGGEVGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDQEGLALS 243
Query: 300 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359
R++TVSTSG+VPQ+++ E+N LA+SL+A DE+R+ ++P+NRKY + L+E R
Sbjct: 244 RRRITVSTSGVVPQIERLGLEANAMLAISLHAVRDELRDELVPLNRKYPIAQLLEACRNY 303
Query: 360 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 419
N ++ FEYVML GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E+
Sbjct: 304 PGLSNARRITFEYVMLKGVNDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWER 363
Query: 420 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
+ F + AG +R RG D +AACGQL
Sbjct: 364 IERFSEFVFNAGYASPVRTPRGRDILAACGQL 395
>sp|Q3SL73|RLMN_THIDA Dual-specificity RNA methyltransferase RlmN OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=rlmN PE=3 SV=1
Length = 372
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 190/346 (54%), Gaps = 21/346 (6%)
Query: 123 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLK 180
L W +P +A + W G +A TD + K ++ L A +A ++
Sbjct: 13 LTAWFGERGEKPFRARQVFHWIHQAGVTDFAQMTD----IAKSLREKLQNEAVVQAPAIN 68
Query: 181 DILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 240
S+DGTRK LF + G IETV IP + R T+CVSSQVGCA+ C FC TGR G R
Sbjct: 69 FAHLSADGTRKWLFDVGVGNGIETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFNR 127
Query: 241 HLTAAEIVEQAVFARRLLSSE---------VGSI-----TNVVFMGMGEPLHNVENVIKA 286
+LT AEIV Q A+ L E G I TNVV MGMGEPL N ENV+ A
Sbjct: 128 NLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFENVVTA 187
Query: 287 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 346
+M+ + S R+VTVSTSGLVP + + ALAVSL+A D +R+ I+PINRK
Sbjct: 188 LGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVPINRK 247
Query: 347 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 406
Y L L+ R L + FEYVMLAGVND + A++LI L + +PCK NLI FNP
Sbjct: 248 YPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRDVPCKFNLIPFNP 307
Query: 407 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
S + E M FR IL AG V R +RGDD AACGQL
Sbjct: 308 FPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLA 353
>sp|Q5X516|RLMN_LEGPA Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Paris) GN=rlmN PE=3 SV=1
Length = 382
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 204/348 (58%), Gaps = 13/348 (3%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 169
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGICDFAQMTN----LGKVLRNKLS 60
Query: 170 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNC 228
+ A + S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA+NC
Sbjct: 61 QLACIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCALNC 118
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVI 284
FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +NV+
Sbjct: 119 SFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVV 178
Query: 285 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 344
A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++PIN
Sbjct: 179 SAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPIN 238
Query: 345 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 404
+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NLI F
Sbjct: 239 KKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPF 298
Query: 405 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
NP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 299 NPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>sp|Q5LN66|RLMN_RUEPO Dual-specificity RNA methyltransferase RlmN OS=Ruegeria pomeroyi
(strain ATCC 700808 / DSM 15171 / DSS-3) GN=rlmN PE=3
SV=1
Length = 393
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 211/368 (57%), Gaps = 22/368 (5%)
Query: 102 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 154
++ +P+K R+ L G++ +++ + H QA M +W+ +Y W
Sbjct: 10 DVVTIPRKLPEGRINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 155 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 214
+ + L K ++ L+EH + L S DGTRK L + G +E V IP R
Sbjct: 67 EAMTNLAKAYRAQLAEHFTIEIPEVITRLVSEDGTRKYLVRIAGGHEVEVVYIP-EEDRG 125
Query: 215 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGSI 265
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E +
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPKDETRLL 185
Query: 266 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 325
+N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLL 245
Query: 326 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 385
A+S +ATTDEVR+ ++PIN+++ + L+ L N+ ++ FEYVML GVNDS DA
Sbjct: 246 AISFHATTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADA 305
Query: 386 KRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 443
RL+ ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RGDD
Sbjct: 306 HRLLDHIRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDD 365
Query: 444 QMAACGQL 451
MAACGQL
Sbjct: 366 IMAACGQL 373
>sp|A1UUF7|RLMN_BARBK Dual-specificity RNA methyltransferase RlmN OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rlmN PE=3
SV=1
Length = 414
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 211/378 (55%), Gaps = 30/378 (7%)
Query: 115 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 170
L G+S E+ Q +RS Q M LW Y + + DE+ ++K ++ML +
Sbjct: 32 LIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSF--DEMFNISKPMREMLKD 89
Query: 171 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 225
+ + + S DGT K L + IETV IP GR T+CVSSQVGC
Sbjct: 90 NFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIP-GEGRGTLCVSSQVGCT 148
Query: 226 MNCQFCYTGRMGLKRHLTAAEIVEQAVFAR-RL-------------LSSEVGSITNVVFM 271
+ C FCYTG L R+LTA EI+ Q +FAR RL LS E ITN+V M
Sbjct: 149 LTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVMM 208
Query: 272 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 331
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + E LAVSL+A
Sbjct: 209 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLHA 268
Query: 332 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 391
D +R+ ++PIN+KY L +L+E R N ++ FEYVML VNDS DDAK+LI L
Sbjct: 269 VCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIKL 328
Query: 392 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG D +AACG L
Sbjct: 329 LKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGNL 388
Query: 452 GNPGAIQAPLLRVPEKFQ 469
+ + LR E+ Q
Sbjct: 389 KS----TSERLRKSERLQ 402
>sp|A5IC42|RLMN_LEGPC Dual-specificity RNA methyltransferase RlmN OS=Legionella
pneumophila (strain Corby) GN=rlmN PE=3 SV=1
Length = 382
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 112 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 169
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 170 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 225
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 226 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 281
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKKITNVVMMGMGEPLLNFD 175
Query: 282 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 341
NV+ A +IM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 342 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 401
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 402 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQLA 346
>sp|Q51385|RLMN_PSEAE Dual-specificity RNA methyltransferase RlmN OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmN PE=3 SV=2
Length = 379
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 112 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 168
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 62
Query: 169 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 228
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 121
Query: 229 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 284
FC TG+ G LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 122 SFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 181
Query: 285 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 344
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 182 AAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPIN 241
Query: 345 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403
+KY LG+L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 242 KKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 301
Query: 404 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 302 FNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,600,667
Number of Sequences: 539616
Number of extensions: 7233707
Number of successful extensions: 22043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 19138
Number of HSP's gapped (non-prelim): 703
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)