Query 011838
Match_columns 476
No_of_seqs 336 out of 2669
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 6.2E-94 1.3E-98 733.0 40.3 342 110-455 5-365 (371)
2 COG0820 Predicted Fe-S-cluster 100.0 1.8E-87 3.8E-92 677.3 36.9 341 112-456 1-344 (349)
3 PRK14459 ribosomal RNA large s 100.0 1.7E-86 3.7E-91 683.7 42.1 338 113-454 22-371 (373)
4 PRK14465 ribosomal RNA large s 100.0 9.2E-87 2E-91 679.9 39.3 337 111-454 3-341 (342)
5 PRK14466 ribosomal RNA large s 100.0 4.9E-86 1.1E-90 673.5 39.0 338 111-457 3-340 (345)
6 PRK11194 ribosomal RNA large s 100.0 1.7E-84 3.7E-89 670.3 40.7 340 111-455 4-350 (372)
7 PRK14462 ribosomal RNA large s 100.0 3.8E-84 8.2E-89 663.8 39.6 340 111-457 1-353 (356)
8 TIGR00048 radical SAM enzyme, 100.0 8.3E-84 1.8E-88 663.9 41.7 344 109-456 3-347 (355)
9 PRK14467 ribosomal RNA large s 100.0 7E-84 1.5E-88 661.4 39.1 335 113-454 2-341 (348)
10 PRK14457 ribosomal RNA large s 100.0 5.3E-83 1.1E-87 654.7 40.5 334 113-455 2-343 (345)
11 PRK14454 ribosomal RNA large s 100.0 2.4E-82 5.3E-87 649.7 39.7 336 113-455 2-339 (342)
12 PRK14455 ribosomal RNA large s 100.0 5.1E-82 1.1E-86 650.8 40.7 342 111-456 9-351 (356)
13 PRK14460 ribosomal RNA large s 100.0 1E-81 2.2E-86 647.8 41.0 341 113-456 2-346 (354)
14 PRK14463 ribosomal RNA large s 100.0 1.7E-81 3.6E-86 645.1 40.6 341 111-460 3-343 (349)
15 PRK14456 ribosomal RNA large s 100.0 2.4E-81 5.2E-86 647.0 41.5 340 111-454 16-365 (368)
16 PRK14470 ribosomal RNA large s 100.0 1.6E-81 3.4E-86 641.7 39.1 330 116-454 2-334 (336)
17 PRK14464 ribosomal RNA large s 100.0 1.8E-80 4E-85 633.0 33.7 333 118-464 1-339 (344)
18 PRK14468 ribosomal RNA large s 100.0 1.9E-79 4.2E-84 628.9 40.5 332 113-455 2-334 (343)
19 PRK14453 chloramphenicol/florf 100.0 1.4E-79 3.1E-84 629.7 39.5 331 117-456 4-344 (347)
20 PRK14469 ribosomal RNA large s 100.0 8.6E-79 1.9E-83 625.1 40.2 336 113-456 2-339 (343)
21 PRK11145 pflA pyruvate formate 100.0 1.8E-29 3.8E-34 247.6 23.6 212 194-435 13-245 (246)
22 TIGR01290 nifB nitrogenase cof 99.9 3.5E-26 7.7E-31 242.3 24.2 204 212-430 24-258 (442)
23 PRK00164 moaA molybdenum cofac 99.9 5E-25 1.1E-29 225.2 23.5 232 214-464 17-280 (331)
24 TIGR02493 PFLA pyruvate format 99.9 1.2E-23 2.7E-28 204.5 25.4 193 221-430 22-235 (235)
25 COG1180 PflA Pyruvate-formate 99.9 3.7E-24 8.1E-29 212.5 22.2 205 220-441 41-252 (260)
26 TIGR03821 AblA_like_1 lysine-2 99.9 1.7E-24 3.8E-29 221.0 15.8 253 158-441 51-314 (321)
27 PRK10076 pyruvate formate lyas 99.9 3.9E-23 8.5E-28 199.6 22.2 181 239-436 16-211 (213)
28 PLN02951 Molybderin biosynthes 99.9 7.1E-23 1.5E-27 213.1 24.8 245 200-464 43-321 (373)
29 TIGR02494 PFLE_PFLC glycyl-rad 99.9 1.3E-23 2.8E-28 211.4 18.6 174 241-431 105-295 (295)
30 PRK13762 tRNA-modifying enzyme 99.9 2E-22 4.3E-27 205.9 23.2 252 157-433 4-294 (322)
31 COG2896 MoaA Molybdenum cofact 99.9 4E-22 8.6E-27 201.5 22.1 230 214-463 11-271 (322)
32 TIGR02668 moaA_archaeal probab 99.9 7.2E-22 1.6E-26 199.4 23.5 231 214-464 10-268 (302)
33 PRK13361 molybdenum cofactor b 99.9 2.2E-21 4.9E-26 198.6 24.5 230 215-463 15-275 (329)
34 TIGR02666 moaA molybdenum cofa 99.9 3.1E-21 6.6E-26 197.6 24.2 232 215-464 11-279 (334)
35 TIGR02495 NrdG2 anaerobic ribo 99.8 1.1E-19 2.3E-24 171.4 21.1 162 221-403 23-189 (191)
36 COG0731 Fe-S oxidoreductases [ 99.8 1.8E-19 3.9E-24 180.2 20.8 205 222-434 32-248 (296)
37 PRK05301 pyrroloquinoline quin 99.8 1.4E-17 3E-22 173.4 25.1 193 214-427 16-218 (378)
38 TIGR03470 HpnH hopanoid biosyn 99.8 1.9E-17 4.1E-22 169.1 24.6 232 215-472 29-286 (318)
39 TIGR03278 methan_mark_10 putat 99.8 2E-17 4.4E-22 173.4 24.0 180 239-435 51-248 (404)
40 TIGR02109 PQQ_syn_pqqE coenzym 99.8 3.1E-17 6.6E-22 169.5 23.6 192 214-426 7-208 (358)
41 COG2100 Predicted Fe-S oxidore 99.8 2.2E-17 4.8E-22 164.4 19.5 172 211-396 104-284 (414)
42 TIGR03822 AblA_like_2 lysine-2 99.8 4.3E-17 9.3E-22 166.7 22.3 216 199-441 76-308 (321)
43 smart00729 Elp3 Elongator prot 99.8 8E-17 1.7E-21 150.3 19.8 188 215-411 2-196 (216)
44 TIGR00238 KamA family protein. 99.7 5.3E-16 1.1E-20 159.3 20.8 217 199-441 101-331 (331)
45 PRK13758 anaerobic sulfatase-m 99.7 1.6E-15 3.4E-20 157.4 24.0 194 221-427 12-221 (370)
46 TIGR03365 Bsubt_queE 7-cyano-7 99.7 2.9E-15 6.3E-20 147.2 22.3 152 177-376 3-161 (238)
47 TIGR03820 lys_2_3_AblA lysine- 99.7 7.2E-15 1.6E-19 154.2 24.7 213 199-440 96-325 (417)
48 PRK13745 anaerobic sulfatase-m 99.7 6.3E-15 1.4E-19 155.5 23.9 180 214-406 13-205 (412)
49 COG1313 PflX Uncharacterized F 99.7 7.3E-15 1.6E-19 144.8 19.4 217 193-434 95-331 (335)
50 COG0641 AslB Arylsulfatase reg 99.6 1.2E-14 2.6E-19 151.4 21.3 172 224-408 18-196 (378)
51 PF04055 Radical_SAM: Radical 99.6 1.2E-14 2.7E-19 130.1 17.9 155 219-392 2-166 (166)
52 cd01335 Radical_SAM Radical SA 99.6 3.1E-14 6.7E-19 130.8 19.1 176 220-413 3-187 (204)
53 COG1509 KamA Lysine 2,3-aminom 99.6 4.5E-15 9.8E-20 150.6 14.1 218 200-442 100-331 (369)
54 COG0535 Predicted Fe-S oxidore 99.6 2.9E-13 6.3E-18 137.4 23.5 177 213-408 18-199 (347)
55 PRK07094 biotin synthase; Prov 99.6 7.7E-13 1.7E-17 135.0 23.6 190 220-428 45-244 (323)
56 COG5014 Predicted Fe-S oxidore 99.5 2.7E-13 5.8E-18 124.9 14.9 156 221-396 48-213 (228)
57 PRK09240 thiH thiamine biosynt 99.5 2.4E-12 5.1E-17 134.4 22.8 192 220-428 80-286 (371)
58 TIGR00433 bioB biotin syntheta 99.5 2.2E-11 4.9E-16 122.4 25.1 189 221-429 36-237 (296)
59 TIGR02491 NrdG anaerobic ribon 99.4 1.2E-12 2.6E-17 120.4 10.2 120 195-343 9-145 (154)
60 PRK06256 biotin synthase; Vali 99.4 5.4E-11 1.2E-15 122.2 23.5 202 221-442 65-279 (336)
61 TIGR01125 MiaB-like tRNA modif 99.4 8.7E-11 1.9E-15 124.8 23.0 183 214-411 135-331 (430)
62 PF13353 Fer4_12: 4Fe-4S singl 99.3 5.5E-12 1.2E-16 112.5 9.9 92 221-324 12-114 (139)
63 PRK08508 biotin synthase; Prov 99.3 2.2E-10 4.8E-15 115.2 22.1 204 220-443 13-229 (279)
64 TIGR02351 thiH thiazole biosyn 99.3 1.1E-10 2.5E-15 121.6 20.6 192 220-428 79-285 (366)
65 PRK14338 (dimethylallyl)adenos 99.3 3.5E-10 7.6E-15 121.2 23.6 185 212-411 153-351 (459)
66 PRK14862 rimO ribosomal protei 99.3 1.7E-10 3.7E-15 123.0 20.8 182 213-411 138-342 (440)
67 TIGR03471 HpnJ hopanoid biosyn 99.3 1.2E-09 2.6E-14 117.4 24.6 178 215-410 197-381 (472)
68 TIGR00539 hemN_rel putative ox 99.2 2E-09 4.3E-14 111.8 24.0 200 222-433 8-227 (360)
69 PRK05481 lipoyl synthase; Prov 99.2 2.4E-09 5.1E-14 108.4 23.7 195 220-433 59-265 (289)
70 PRK05660 HemN family oxidoredu 99.2 2.7E-09 5.9E-14 111.7 24.8 202 222-433 14-234 (378)
71 KOG2876 Molybdenum cofactor bi 99.2 1.3E-11 2.7E-16 120.7 6.2 226 214-457 11-265 (323)
72 TIGR02026 BchE magnesium-proto 99.2 1.3E-09 2.7E-14 118.1 22.4 179 216-410 195-381 (497)
73 TIGR01579 MiaB-like-C MiaB-lik 99.2 2.4E-09 5.3E-14 113.2 24.1 181 213-411 137-334 (414)
74 PF13394 Fer4_14: 4Fe-4S singl 99.2 2.2E-11 4.8E-16 106.1 7.0 83 221-312 5-92 (119)
75 TIGR03551 F420_cofH 7,8-dideme 99.2 6.5E-10 1.4E-14 114.9 19.0 190 219-427 44-264 (343)
76 PRK08446 coproporphyrinogen II 99.2 2.9E-09 6.2E-14 110.4 23.8 198 223-433 9-222 (350)
77 PRK09249 coproporphyrinogen II 99.2 3.5E-09 7.7E-14 113.3 25.0 202 223-434 58-282 (453)
78 PRK15108 biotin synthase; Prov 99.2 3.2E-09 6.9E-14 110.0 23.8 185 221-426 50-249 (345)
79 TIGR00089 RNA modification enz 99.2 1.5E-09 3.3E-14 115.3 21.5 184 213-411 138-335 (429)
80 PLN02389 biotin synthase 99.2 3.9E-09 8.5E-14 110.5 23.4 186 221-428 90-293 (379)
81 PRK05799 coproporphyrinogen II 99.2 6.6E-09 1.4E-13 108.4 24.8 197 222-433 11-230 (374)
82 PRK08599 coproporphyrinogen II 99.2 1.4E-08 3.1E-13 106.0 26.0 199 223-433 10-231 (377)
83 PRK14334 (dimethylallyl)adenos 99.2 6.9E-09 1.5E-13 110.7 23.9 183 212-411 136-333 (440)
84 PRK13347 coproporphyrinogen II 99.2 1.9E-08 4E-13 107.8 27.3 200 224-433 60-282 (453)
85 TIGR00538 hemN oxygen-independ 99.2 1.2E-08 2.6E-13 109.3 25.7 202 222-433 57-281 (455)
86 PRK05628 coproporphyrinogen II 99.1 1.7E-08 3.6E-13 105.5 25.8 202 223-433 11-239 (375)
87 PRK14332 (dimethylallyl)adenos 99.1 7.4E-09 1.6E-13 110.8 23.5 182 214-411 154-347 (449)
88 PRK06245 cofG FO synthase subu 99.1 2.3E-09 5E-14 110.3 18.9 192 218-428 16-236 (336)
89 PRK12928 lipoyl synthase; Prov 99.1 1E-08 2.2E-13 103.9 22.8 195 221-433 67-273 (290)
90 COG0602 NrdG Organic radical a 99.1 1.5E-10 3.2E-15 112.1 9.1 85 212-312 21-111 (212)
91 TIGR00423 radical SAM domain p 99.1 5.1E-09 1.1E-13 106.7 20.5 193 218-427 9-229 (309)
92 PRK14331 (dimethylallyl)adenos 99.1 6.9E-09 1.5E-13 110.6 22.3 181 213-411 145-341 (437)
93 PRK14330 (dimethylallyl)adenos 99.1 9.6E-09 2.1E-13 109.4 23.2 182 213-411 139-336 (434)
94 PRK14326 (dimethylallyl)adenos 99.1 1E-08 2.3E-13 111.1 23.7 184 213-411 156-353 (502)
95 TIGR02826 RNR_activ_nrdG3 anae 99.1 7E-10 1.5E-14 101.6 11.9 96 211-323 13-112 (147)
96 TIGR03699 mena_SCO4550 menaqui 99.1 7.1E-09 1.5E-13 106.8 20.3 196 220-428 47-263 (340)
97 TIGR00510 lipA lipoate synthas 99.1 1.7E-08 3.8E-13 102.6 22.7 196 220-433 69-276 (302)
98 PRK14336 (dimethylallyl)adenos 99.1 1.6E-08 3.5E-13 107.3 23.4 182 212-411 122-320 (418)
99 PRK08207 coproporphyrinogen II 99.1 4.9E-08 1.1E-12 105.5 27.2 204 222-434 171-399 (488)
100 PRK14340 (dimethylallyl)adenos 99.1 1.2E-08 2.7E-13 109.0 22.4 182 212-411 147-344 (445)
101 PRK06267 hypothetical protein; 99.1 2E-08 4.3E-13 104.3 23.3 187 221-429 34-232 (350)
102 COG0621 MiaB 2-methylthioadeni 99.1 8.7E-09 1.9E-13 109.1 20.4 186 211-411 141-341 (437)
103 PRK14328 (dimethylallyl)adenos 99.1 1.4E-08 3E-13 108.4 22.1 183 213-411 146-343 (439)
104 TIGR01578 MiaB-like-B MiaB-lik 99.1 1.3E-08 2.8E-13 108.0 21.3 182 213-411 132-329 (420)
105 PRK14325 (dimethylallyl)adenos 99.1 1.6E-08 3.4E-13 108.0 22.2 181 213-411 146-345 (444)
106 TIGR01574 miaB-methiolase tRNA 99.1 1.9E-08 4E-13 107.4 22.5 184 212-411 143-343 (438)
107 PRK14337 (dimethylallyl)adenos 99.1 2.4E-08 5.2E-13 106.8 23.4 184 213-411 147-345 (446)
108 PRK14335 (dimethylallyl)adenos 99.1 4.3E-08 9.2E-13 105.2 24.5 181 213-411 151-354 (455)
109 PRK14327 (dimethylallyl)adenos 99.0 3.6E-08 7.7E-13 107.0 23.6 182 212-411 210-408 (509)
110 PRK14339 (dimethylallyl)adenos 99.0 3.2E-08 6.9E-13 105.1 22.8 184 212-411 125-326 (420)
111 TIGR01212 radical SAM protein, 99.0 6.9E-08 1.5E-12 98.3 23.7 195 227-435 39-256 (302)
112 PRK08208 coproporphyrinogen II 99.0 6.3E-08 1.4E-12 103.1 24.3 202 222-433 47-266 (430)
113 PRK07379 coproporphyrinogen II 99.0 1.2E-07 2.6E-12 100.2 25.7 209 215-433 12-246 (400)
114 PRK11121 nrdG anaerobic ribonu 99.0 2.8E-09 6E-14 98.3 11.6 103 196-322 11-124 (154)
115 PRK14329 (dimethylallyl)adenos 99.0 9.2E-08 2E-12 102.9 23.2 184 213-411 167-369 (467)
116 TIGR01210 conserved hypothetic 99.0 6.2E-07 1.3E-11 91.8 27.5 207 218-435 19-250 (313)
117 PRK14333 (dimethylallyl)adenos 99.0 8.2E-08 1.8E-12 102.8 21.8 183 214-411 148-351 (448)
118 PLN02428 lipoic acid synthase 98.9 2.6E-07 5.6E-12 95.6 23.5 197 221-433 109-316 (349)
119 PRK05904 coproporphyrinogen II 98.9 3.5E-07 7.6E-12 95.1 23.4 197 224-434 16-230 (353)
120 COG2108 Uncharacterized conser 98.9 2.6E-08 5.7E-13 100.3 13.7 153 221-403 35-200 (353)
121 PRK08898 coproporphyrinogen II 98.9 8.5E-07 1.8E-11 93.5 25.3 201 222-433 27-248 (394)
122 PRK06582 coproporphyrinogen II 98.9 1.5E-06 3.2E-11 91.6 27.0 200 222-433 19-241 (390)
123 TIGR03700 mena_SCO4494 putativ 98.9 2.2E-07 4.8E-12 96.4 20.5 168 220-405 54-243 (351)
124 PRK09058 coproporphyrinogen II 98.9 7.6E-07 1.7E-11 95.4 25.1 201 224-433 71-295 (449)
125 PRK09057 coproporphyrinogen II 98.8 8.1E-07 1.8E-11 93.2 23.7 201 222-434 12-235 (380)
126 PRK06294 coproporphyrinogen II 98.8 5.6E-07 1.2E-11 94.1 22.2 196 222-433 14-234 (370)
127 PRK08445 hypothetical protein; 98.8 2.9E-07 6.4E-12 95.5 18.8 159 221-397 49-225 (348)
128 TIGR03550 F420_cofG 7,8-dideme 98.8 2E-07 4.3E-12 95.7 16.9 192 218-426 8-230 (322)
129 COG0502 BioB Biotin synthase a 98.7 1.6E-06 3.4E-11 89.0 21.2 202 221-443 58-273 (335)
130 PRK09613 thiH thiamine biosynt 98.7 2.3E-06 5.1E-11 92.0 23.5 204 221-439 91-320 (469)
131 COG1964 Predicted Fe-S oxidore 98.7 2.6E-07 5.7E-12 96.7 15.3 152 231-404 78-240 (475)
132 PRK07360 FO synthase subunit 2 98.7 5.4E-07 1.2E-11 94.3 17.9 167 221-405 67-256 (371)
133 COG1625 Fe-S oxidoreductase, r 98.7 5.6E-07 1.2E-11 93.7 15.3 162 267-436 81-255 (414)
134 PRK08629 coproporphyrinogen II 98.6 5.8E-06 1.3E-10 88.3 23.5 195 224-433 62-273 (433)
135 PRK08444 hypothetical protein; 98.6 2.2E-06 4.8E-11 89.2 19.5 190 220-427 55-270 (353)
136 PRK00955 hypothetical protein; 98.6 2.4E-06 5.3E-11 94.1 18.9 184 213-410 291-522 (620)
137 COG1032 Fe-S oxidoreductase [E 98.6 2.6E-06 5.5E-11 90.5 18.1 189 215-412 199-401 (490)
138 COG1533 SplB DNA repair photol 98.6 4.8E-06 1E-10 84.7 18.6 166 218-397 33-213 (297)
139 TIGR03279 cyano_FeS_chp putati 98.5 6.5E-06 1.4E-10 87.1 20.1 86 303-395 121-206 (433)
140 PRK05927 hypothetical protein; 98.4 9.1E-06 2E-10 84.5 17.6 194 221-427 52-268 (350)
141 PRK01254 hypothetical protein; 98.4 1.8E-05 3.9E-10 87.3 20.2 184 214-408 372-599 (707)
142 PTZ00413 lipoate synthase; Pro 98.4 9.5E-05 2.1E-09 77.1 23.3 197 221-433 156-364 (398)
143 PRK05926 hypothetical protein; 98.3 2.7E-05 5.9E-10 81.6 17.5 158 221-397 75-250 (370)
144 PRK09234 fbiC FO synthase; Rev 98.2 0.00015 3.3E-09 83.2 21.4 190 219-426 531-750 (843)
145 COG0635 HemN Coproporphyrinoge 98.2 0.00055 1.2E-08 72.9 23.7 202 222-433 42-267 (416)
146 TIGR01211 ELP3 histone acetylt 98.1 0.0007 1.5E-08 74.0 24.5 196 222-429 76-331 (522)
147 PRK09234 fbiC FO synthase; Rev 98.0 0.0003 6.5E-09 80.8 19.5 187 221-428 78-301 (843)
148 COG1856 Uncharacterized homolo 97.9 0.0013 2.8E-08 63.8 18.0 192 216-430 12-217 (275)
149 COG1243 ELP3 Histone acetyltra 97.8 0.002 4.4E-08 68.3 19.0 117 303-426 187-320 (515)
150 COG1244 Predicted Fe-S oxidore 97.7 0.014 2.9E-07 59.8 23.0 200 221-432 54-282 (358)
151 COG1060 ThiH Thiamine biosynth 97.6 0.0025 5.5E-08 66.8 17.6 190 221-427 66-282 (370)
152 COG2516 Biotin synthase-relate 97.5 0.0029 6.4E-08 64.3 15.6 195 222-432 39-256 (339)
153 COG1242 Predicted Fe-S oxidore 97.4 0.021 4.5E-07 57.4 18.9 114 317-437 138-263 (312)
154 KOG1160 Fe-S oxidoreductase [E 97.2 0.025 5.4E-07 59.8 17.8 244 160-431 233-515 (601)
155 COG0320 LipA Lipoate synthase 97.1 0.023 5E-07 56.9 15.4 195 221-433 77-282 (306)
156 COG1031 Uncharacterized Fe-S o 96.8 0.23 5.1E-06 53.1 21.0 204 214-428 182-434 (560)
157 cd03174 DRE_TIM_metallolyase D 96.1 0.26 5.6E-06 48.5 16.0 179 239-441 13-202 (265)
158 COG4277 Predicted DNA-binding 95.4 0.61 1.3E-05 47.6 15.1 241 198-451 38-313 (404)
159 KOG2900 Biotin synthase [Coenz 94.4 0.19 4.2E-06 49.9 8.4 161 221-405 91-265 (380)
160 KOG2672 Lipoate synthase [Coen 94.1 1.4 3E-05 44.6 13.8 191 222-434 119-326 (360)
161 KOG4355 Predicted Fe-S oxidore 88.8 20 0.00043 38.1 15.8 173 217-411 190-384 (547)
162 KOG2492 CDK5 activator-binding 77.3 1.3 2.8E-05 47.0 1.7 56 212-273 218-274 (552)
163 cd01966 Nitrogenase_NifN_1 Nit 73.2 36 0.00077 36.4 11.4 114 270-403 62-191 (417)
164 cd01973 Nitrogenase_VFe_beta_l 72.6 30 0.00066 37.5 10.8 30 373-403 166-195 (454)
165 TIGR02932 vnfK_nitrog V-contai 69.1 36 0.00078 36.9 10.4 30 373-403 170-199 (457)
166 KOG2535 RNA polymerase II elon 63.0 1.9E+02 0.0041 30.6 13.4 85 303-394 225-314 (554)
167 PF14824 Sirohm_synth_M: Siroh 62.4 9.4 0.0002 25.8 2.7 19 301-319 5-23 (30)
168 TIGR02931 anfK_nitrog Fe-only 61.1 61 0.0013 35.2 10.4 29 374-403 174-202 (461)
169 cd01965 Nitrogenase_MoFe_beta_ 59.3 1.1E+02 0.0023 32.7 11.7 117 268-403 61-189 (428)
170 PRK14477 bifunctional nitrogen 58.3 99 0.0021 36.7 12.1 115 270-403 552-678 (917)
171 COG0296 GlgB 1,4-alpha-glucan 57.1 26 0.00056 39.6 6.7 74 381-454 163-252 (628)
172 PRK14476 nitrogenase molybdenu 57.0 68 0.0015 34.8 9.8 115 268-403 72-202 (455)
173 PRK08091 ribulose-phosphate 3- 56.3 2.1E+02 0.0046 28.3 15.3 109 303-436 73-182 (228)
174 TIGR01286 nifK nitrogenase mol 54.9 93 0.002 34.4 10.5 114 270-403 123-254 (515)
175 PF08902 DUF1848: Domain of un 54.1 1.6E+02 0.0035 29.8 11.2 87 348-435 94-199 (266)
176 cd03466 Nitrogenase_NifN_2 Nit 49.7 2.5E+02 0.0055 30.0 12.7 112 271-403 66-188 (429)
177 cd01974 Nitrogenase_MoFe_beta 49.1 1.7E+02 0.0036 31.5 11.2 114 270-403 66-194 (435)
178 cd05015 SIS_PGI_1 Phosphogluco 47.8 1.5E+02 0.0034 27.0 9.4 68 264-337 19-90 (158)
179 PF11823 DUF3343: Protein of u 47.0 30 0.00066 27.5 4.0 33 418-451 12-44 (73)
180 TIGR01285 nifN nitrogenase mol 44.3 2E+02 0.0043 31.0 10.8 114 270-403 72-201 (432)
181 smart00642 Aamy Alpha-amylase 40.8 1.2E+02 0.0027 28.1 7.6 21 416-436 68-88 (166)
182 cd01967 Nitrogenase_MoFe_alpha 40.8 3E+02 0.0066 28.8 11.5 28 374-402 165-192 (406)
183 PF03830 PTSIIB_sorb: PTS syst 40.6 1.7E+02 0.0037 26.9 8.3 84 348-442 60-147 (151)
184 TIGR00854 pts-sorbose PTS syst 39.2 2.5E+02 0.0054 25.8 9.2 59 381-442 84-147 (151)
185 COG0160 GabT 4-aminobutyrate a 39.2 74 0.0016 34.6 6.5 50 398-452 222-272 (447)
186 PRK11858 aksA trans-homoaconit 38.0 5.1E+02 0.011 27.3 19.2 178 239-441 20-200 (378)
187 cd04885 ACT_ThrD-I Tandem C-te 36.6 1E+02 0.0022 23.8 5.4 54 380-434 7-66 (68)
188 PF06415 iPGM_N: BPG-independe 36.4 2.9E+02 0.0063 27.3 9.6 79 350-432 14-95 (223)
189 cd04908 ACT_Bt0572_1 N-termina 36.1 54 0.0012 25.1 3.8 55 380-435 10-65 (66)
190 COG1509 KamA Lysine 2,3-aminom 34.8 1.3E+02 0.0028 31.9 7.2 114 347-468 141-266 (369)
191 cd01971 Nitrogenase_VnfN_like 33.6 4.5E+02 0.0098 28.1 11.5 114 268-403 66-193 (427)
192 cd00001 PTS_IIB_man PTS_IIB, P 33.4 3.6E+02 0.0079 24.7 9.3 59 381-442 83-146 (151)
193 PF05853 DUF849: Prokaryotic p 33.2 5.2E+02 0.011 26.0 17.0 163 241-429 22-196 (272)
194 PF00834 Ribul_P_3_epim: Ribul 32.6 3.5E+02 0.0075 26.1 9.4 137 266-436 29-169 (201)
195 cd06831 PLPDE_III_ODC_like_AZI 32.6 6.2E+02 0.014 26.8 15.9 166 264-453 79-260 (394)
196 PRK14057 epimerase; Provisiona 32.4 5.4E+02 0.012 25.9 15.6 100 312-436 89-196 (254)
197 PF00070 Pyr_redox: Pyridine n 31.2 1.7E+02 0.0038 23.0 6.1 49 385-436 11-59 (80)
198 COG0276 HemH Protoheme ferro-l 31.0 4.7E+02 0.01 27.3 10.6 102 274-394 202-316 (320)
199 TIGR02631 xylA_Arthro xylose i 30.8 6.7E+02 0.015 26.6 15.3 46 242-297 32-83 (382)
200 PRK07328 histidinol-phosphatas 29.9 5.6E+02 0.012 25.3 17.1 78 242-333 18-117 (269)
201 cd07945 DRE_TIM_CMS Leptospira 29.8 4.4E+02 0.0095 26.6 10.1 85 241-330 107-199 (280)
202 PF06463 Mob_synth_C: Molybden 29.6 1.1E+02 0.0023 27.3 5.0 30 434-463 61-92 (128)
203 cd01320 ADA Adenosine deaminas 29.3 6E+02 0.013 25.6 11.6 82 351-438 112-193 (325)
204 COG4822 CbiK Cobalamin biosynt 29.3 2.3E+02 0.005 28.1 7.4 53 384-436 180-234 (265)
205 PRK14706 glycogen branching en 28.5 1.4E+02 0.0031 33.9 6.9 54 383-436 168-235 (639)
206 cd04906 ACT_ThrD-I_1 First of 28.3 2.1E+02 0.0045 23.2 6.2 55 380-436 10-71 (85)
207 cd01972 Nitrogenase_VnfE_like 28.3 3.8E+02 0.0083 28.6 9.9 22 382-403 178-199 (426)
208 PRK12677 xylose isomerase; Pro 27.9 7.5E+02 0.016 26.2 17.5 48 240-297 29-82 (384)
209 cd01968 Nitrogenase_NifE_I Nit 27.6 5.7E+02 0.012 27.0 11.0 27 374-401 163-189 (410)
210 cd03413 CbiK_C Anaerobic cobal 27.1 2.7E+02 0.0058 23.8 6.9 55 384-438 43-99 (103)
211 TIGR02090 LEU1_arch isopropylm 27.0 7.5E+02 0.016 25.9 20.7 178 239-441 16-196 (363)
212 PRK14705 glycogen branching en 26.9 1.5E+02 0.0033 36.3 7.1 55 383-437 766-834 (1224)
213 PF10096 DUF2334: Uncharacteri 26.2 4.3E+02 0.0093 26.1 9.1 64 373-436 4-73 (243)
214 TIGR01430 aden_deam adenosine 24.6 7.4E+02 0.016 25.0 11.3 86 347-438 103-192 (324)
215 COG3444 Phosphotransferase sys 24.3 6E+02 0.013 23.8 10.1 107 325-442 31-148 (159)
216 PRK14478 nitrogenase molybdenu 24.1 5.8E+02 0.013 27.8 10.4 68 373-441 195-272 (475)
217 PRK07428 nicotinate-nucleotide 24.1 4.8E+02 0.011 26.6 9.2 80 283-389 182-261 (288)
218 cd01977 Nitrogenase_VFe_alpha 24.0 6.5E+02 0.014 26.7 10.6 61 374-435 167-237 (415)
219 cd07940 DRE_TIM_IPMS 2-isoprop 23.8 7.2E+02 0.016 24.6 17.6 165 240-429 15-183 (268)
220 KOG0781 Signal recognition par 23.7 5.8E+02 0.013 28.4 9.9 88 352-442 365-477 (587)
221 COG0813 DeoD Purine-nucleoside 23.7 7.4E+02 0.016 24.7 13.1 102 266-383 58-166 (236)
222 TIGR01861 ANFD nitrogenase iro 23.4 3.2E+02 0.0068 30.3 8.3 67 374-441 207-283 (513)
223 COG0148 Eno Enolase [Carbohydr 23.4 9.6E+02 0.021 25.9 12.4 122 325-454 236-387 (423)
224 PRK00035 hemH ferrochelatase; 23.0 8.2E+02 0.018 25.0 15.1 111 266-394 190-321 (333)
225 PF07587 PSD1: Protein of unkn 22.5 1.4E+02 0.0031 29.9 5.0 52 120-172 3-62 (266)
226 TIGR02079 THD1 threonine dehyd 22.4 9.6E+02 0.021 25.5 14.9 133 281-438 257-399 (409)
227 TIGR01515 branching_enzym alph 22.3 2E+02 0.0044 32.4 6.7 52 385-436 159-224 (613)
228 COG0685 MetF 5,10-methylenetet 22.3 2E+02 0.0044 29.3 6.1 30 240-276 87-116 (291)
229 PRK08639 threonine dehydratase 21.8 7.4E+02 0.016 26.4 10.6 131 281-437 268-409 (420)
230 COG0826 Collagenase and relate 21.8 5.2E+02 0.011 27.2 9.1 85 303-396 8-92 (347)
231 PRK15063 isocitrate lyase; Pro 21.6 3.9E+02 0.0085 29.0 8.2 81 348-436 263-344 (428)
232 PRK00035 hemH ferrochelatase; 21.4 3.9E+02 0.0085 27.4 8.1 25 266-291 6-30 (333)
233 PRK12313 glycogen branching en 21.3 2.5E+02 0.0054 31.7 7.2 52 385-436 173-238 (633)
234 cd03174 DRE_TIM_metallolyase D 21.3 4.7E+02 0.01 25.3 8.3 86 242-334 108-200 (265)
235 PRK05402 glycogen branching en 21.1 2.6E+02 0.0055 32.3 7.2 54 383-436 266-333 (726)
236 PRK01076 L-rhamnose isomerase; 21.0 5E+02 0.011 28.0 8.7 120 240-381 68-193 (419)
237 PRK15088 PTS system mannose-sp 21.0 5.9E+02 0.013 26.4 9.2 115 316-442 182-310 (322)
238 PRK09389 (R)-citramalate synth 20.8 3.6E+02 0.0077 29.7 8.0 87 241-334 106-196 (488)
239 PRK11858 aksA trans-homoaconit 20.8 6.6E+02 0.014 26.5 9.8 84 241-333 108-197 (378)
240 PF07002 Copine: Copine; Inte 20.4 3.7E+02 0.0081 24.5 6.8 54 242-311 64-120 (146)
241 PF06627 DUF1153: Protein of u 20.3 60 0.0013 27.5 1.4 30 113-142 56-88 (90)
242 PF00148 Oxidored_nitro: Nitro 20.2 1.9E+02 0.0041 30.2 5.6 108 281-403 60-178 (398)
243 TIGR00426 competence protein C 20.2 3.4E+02 0.0074 21.0 5.8 60 109-171 4-66 (69)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.2e-94 Score=733.04 Aligned_cols=342 Identities=36% Similarity=0.588 Sum_probs=326.5
Q ss_pred CCCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCC-
Q 011838 110 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG- 188 (476)
Q Consensus 110 ~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg- 188 (476)
..+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.|.||
T Consensus 5 ~~~~~l~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~--~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~ 82 (371)
T PRK14461 5 MEQRNLYDLNLAELTELLTAWGQPAFRARQLYRHLYVNL--ADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGL 82 (371)
T ss_pred cCCcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCC
Confidence 457789999999999999999999999999999999999 67999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccC------
Q 011838 189 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------ 262 (476)
Q Consensus 189 t~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~------ 262 (476)
|+||||+++||..||+|+||+ ++|.|+|||||+||+|+|.||+||++|+.|||+++||++|+..+.+.+...+
T Consensus 83 T~K~L~~l~DG~~IEtVli~~-~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~ 161 (371)
T PRK14461 83 TRKALFRLPDGAVVETVLMIY-PDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKR 161 (371)
T ss_pred eEEEEEEcCCCCEEEEEEEec-CCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccc
Confidence 999999999999999999998 6899999999999999999999999999999999999999998876553211
Q ss_pred -----CCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHH
Q 011838 263 -----GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEV 336 (476)
Q Consensus 263 -----~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~ 336 (476)
..++|||||||||||+|||+|+++++++.++.|++||+|+|||||+|++|.|++|+++. +++|+|||||++++.
T Consensus 162 ~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~ 241 (371)
T PRK14461 162 HAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDAL 241 (371)
T ss_pred cccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHH
Confidence 45999999999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred HhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC------CCeEEEEeccCCCCC
Q 011838 337 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI------PCKINLISFNPHCGS 410 (476)
Q Consensus 337 r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l------~~~VnLIp~nP~~~~ 410 (476)
|++|||++++|+++++++++++| ..+++++|+|||+||+|+||+++++++|+++++++ +++||||||||+++.
T Consensus 242 R~~lmPin~~ypl~eLl~a~~~y-~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~ 320 (371)
T PRK14461 242 RSELMPVNRRYPIADLMAATRDY-IAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGT 320 (371)
T ss_pred HHHhcCcccCCCHHHHHHHHHHH-HHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCC
Confidence 99999999999999999999995 78999999999999999999999999999999999 799999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCCccccccccccccC
Q 011838 411 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 455 (476)
Q Consensus 411 ~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~~ 455 (476)
.|++|+.+++++|+++|+++|+.|++|.++|+||+||||||+.+.
T Consensus 321 ~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~~ 365 (371)
T PRK14461 321 PLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGRH 365 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccCC
Confidence 999999999999999999999999999999999999999998754
No 2
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=1.8e-87 Score=677.33 Aligned_cols=341 Identities=45% Similarity=0.738 Sum_probs=327.2
Q ss_pred CcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCeE
Q 011838 112 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191 (476)
Q Consensus 112 ~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K 191 (476)
|.++.+|+.+|+++|+.++|+++|||+|||+|+|+++ +.||++|+||||++|++|+++|.+..+++...+.|.|||+|
T Consensus 1 ~~~l~~l~~~~~~~~~~~~g~~~fra~Qi~~W~y~~~--~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dGT~K 78 (349)
T COG0820 1 KRNLLDLTRAELAEWLAELGLKKFRAKQLFKWIYQKG--VDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGTIK 78 (349)
T ss_pred CcchhhcCHHHHHHHHHhcCccchHHHHHHHHHHHHh--ccCHHHhccccHHHHHHHHHhhccccceEEEEEEcCCCCEE
Confidence 4689999999999999999999999999999999999 57999999999999999999999999999999999999999
Q ss_pred EEEE-ecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhccc-CCCeEEEE
Q 011838 192 ILFM-LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-VGSITNVV 269 (476)
Q Consensus 192 ~l~~-l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~-~~~i~nIv 269 (476)
|||+ +.||..||||+||+ .+|.|+|||||+||+++|+||+||+.|+.|||+++||++|++.+.+.++.. .+.++|||
T Consensus 79 ~l~~~l~dg~~iEtV~ip~-~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV 157 (349)
T COG0820 79 WLFEVLPDGTMIETVLIPE-KDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVV 157 (349)
T ss_pred EEEEEcCCCCEEEEEEEEe-cCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEE
Confidence 9999 99999999999998 688999999999999999999999999999999999999999988776553 35799999
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhc-CCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~-~~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
||||||||+|+|+|.++++++.++.|+++++|+|||+|+|+.|+|.++++. .++.|+|||||+++++|++|+|+|++|+
T Consensus 158 ~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~ 237 (349)
T COG0820 158 FMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYP 237 (349)
T ss_pred EecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCC
Confidence 999999999999999999999999999999999999999999999999964 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~ 428 (476)
++++++++++ |...++++|++||+|++||||+.+++++|++++++++++||||||||+++..|..|+.+++.+|.+.|.
T Consensus 238 ~e~l~~a~r~-Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 238 IEELLEAIRY-YPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred HHHHHHHHHh-hhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 9999999998 578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEccCCCCccccccccccccCC
Q 011838 429 GAGCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 429 ~~Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
++|+.|+||.++|+||+||||||+.+..
T Consensus 317 ~~gv~~tvR~~~g~DIdaACGQL~~~~~ 344 (349)
T COG0820 317 KAGVLVTVRKTRGDDIDAACGQLRGKRI 344 (349)
T ss_pred hCCeeEEeccccccccccccchhhhhhc
Confidence 9999999999999999999999987753
No 3
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-86 Score=683.69 Aligned_cols=338 Identities=36% Similarity=0.532 Sum_probs=320.8
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCC-CeE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG-TRK 191 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg-t~K 191 (476)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|.|| |+|
T Consensus 22 ~~l~~l~~~el~~~~~~~g~~~~ra~Qi~~wiy~~~--~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~t~K 99 (373)
T PRK14459 22 RHLADLTPAERREAVAELGLPAFRAKQLARHYFGRL--TADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGTTRK 99 (373)
T ss_pred cCcccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcC--CCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCCEEE
Confidence 589999999999999999999999999999999999 67999999999999999999999999999999999999 999
Q ss_pred EEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhccc-----CCCeE
Q 011838 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-----VGSIT 266 (476)
Q Consensus 192 ~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~-----~~~i~ 266 (476)
|||+++||..||+|+||+ .+|.|+|||||+||+|+|.||+++.+|+.|+++++||++|+..+.+++... +.+++
T Consensus 100 ~l~~l~Dg~~iEtV~i~~-~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~ 178 (373)
T PRK14459 100 TLWRLHDGTLVESVLMRY-PDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLS 178 (373)
T ss_pred EEEEcCCCCEEEEEEEEE-cCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCcee
Confidence 999999999999999998 678999999999999999999999999999999999999999887765432 23599
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHH--hcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCC
Q 011838 267 NVVFMGMGEPLHNVENVIKAANIMVH--EQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPI 343 (476)
Q Consensus 267 nIvf~GmGEPLLn~d~V~~ai~~l~~--~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~ 343 (476)
|||||||||||+|+|+|+++++.+.+ +.|++|+.++|||+|+|+.+.+.+|++++ ++.|+||||+++++.|++|||+
T Consensus 179 nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~ 258 (373)
T PRK14459 179 NVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPV 258 (373)
T ss_pred EEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCc
Confidence 99999999999999999999999887 57899999999999999999999999987 7889999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CCeEEEEeccCCCCCCCCCCcHHHH
Q 011838 344 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI---PCKINLISFNPHCGSQFTPTTDEKM 420 (476)
Q Consensus 344 ~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l---~~~VnLIp~nP~~~~~~~~ps~e~i 420 (476)
+++|+++++++++++ |..++|++|+|||+||+|+||+++++++|+++++++ .++||||||||.++..|++|+.+.+
T Consensus 259 n~~~~l~~ll~a~~~-~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~ 337 (373)
T PRK14459 259 NTRWKVDEVLDAARY-YADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVE 337 (373)
T ss_pred ccCCCHHHHHHHHHH-HHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHH
Confidence 999999999999998 477899999999999999999999999999999998 6899999999999989999999999
Q ss_pred HHHHHHHHhCCCeEEEccCCCCcccccccccccc
Q 011838 421 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 454 (476)
Q Consensus 421 ~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~ 454 (476)
++|+++|+++|+.|++|.++|+||+||||||+.+
T Consensus 338 ~~F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 338 REFVRRLRAAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HHHHHHHHHCCCeEEeeCCCCcCHhhcCCccccc
Confidence 9999999999999999999999999999999874
No 4
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=9.2e-87 Score=679.89 Aligned_cols=337 Identities=34% Similarity=0.593 Sum_probs=319.6
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.+++.+..+++...+.|.|||+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~fra~Qi~~wiy~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 80 (342)
T PRK14465 3 EKIPLKGRTLKELSEIMVSLGEKKFRAKQIYHGLYVNR--YETWDQFTTFSKEVKEKLEELCSLTELEVVKDLKSVDGTQ 80 (342)
T ss_pred CccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcccccCCccEEEEEEcCCCcE
Confidence 46789999999999999999999999999999999999 5799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccC-CCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEE
Q 011838 191 KILFMLDDGLVIETVVIPCN-RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVV 269 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~-~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIv 269 (476)
||||+++||..||+|+||+. .+|.|+|||||+||||+|.||+++++|+.|+++++||++|+..+.+.+. .+++|||
T Consensus 81 K~l~~l~Dg~~iEtV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~---~~~~niV 157 (342)
T PRK14465 81 KFTFYSGEGKEFEAVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVG---DRATNVV 157 (342)
T ss_pred EEEEEcCCCCEEEEEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcC---CCceEEE
Confidence 99999999999999999984 3589999999999999999999999999999999999999998765542 4699999
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
||||||||+|+|+|+++++++.++.|++++.++|+|+|||+++.+.+|++.. ++.|+|||||++++.|.+|||++++|+
T Consensus 158 FmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~ 237 (342)
T PRK14465 158 FMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFP 237 (342)
T ss_pred EEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCC
Confidence 9999999999999999999998888999999999999999999999999754 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~ 428 (476)
++++++++++ |.+++++++++||+|++|+||+++++++|++++++++++||+|||||. +..|++|+.+++++|+++|+
T Consensus 238 le~ll~al~~-~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~-~~~~~~ps~e~i~~F~~~L~ 315 (342)
T PRK14465 238 LEELLQAAKD-FTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE-FFGWRRPTDDEVAEFIMLLE 315 (342)
T ss_pred HHHHHHHHHH-HHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC-CCCCCCCCHHHHHHHHHHHH
Confidence 9999999998 477889999999999999999999999999999999999999999996 57899999999999999999
Q ss_pred hCCCeEEEccCCCCcccccccccccc
Q 011838 429 GAGCTVFLRLSRGDDQMAACGQLGNP 454 (476)
Q Consensus 429 ~~Gi~v~vR~~~G~di~aaCGqL~~~ 454 (476)
++|+.|++|.++|+||+||||||+.+
T Consensus 316 ~~Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 316 PAGVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred HCCCeEEEeCCCCcChhhcCCccccC
Confidence 99999999999999999999999875
No 5
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.9e-86 Score=673.52 Aligned_cols=338 Identities=38% Similarity=0.638 Sum_probs=321.8
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
.+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+
T Consensus 3 ~~~~l~~l~~~el~~~~~~~g~~~fra~Qi~~wi~~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 80 (345)
T PRK14466 3 PKYPLLGMTLEELQSVAKRLGMPAFAAKQIASWLYDKK--VTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDGTI 80 (345)
T ss_pred CCcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCCeE
Confidence 45689999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEE
Q 011838 191 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 270 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf 270 (476)
||||++.||..||+|+||+ ..|.|+|||||+|||++|.||++++.|+.++++++||++|+..+.+. .+++||||
T Consensus 81 K~l~~l~dg~~iEsVlip~-~~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~-----~~i~nIvf 154 (345)
T PRK14466 81 KYLFPVGEGHFVESVYIPE-EDRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER-----DKLTNLVF 154 (345)
T ss_pred EEEEEcCCCCEEEEEEEec-CCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc-----CCCCeEEE
Confidence 9999999999999999998 57999999999999999999999999999999999999999876321 36999999
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011838 271 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 350 (476)
Q Consensus 271 ~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le 350 (476)
|||||||+|+++|+++++.+.++.|+++++++|+|+|||+.|.+.++++..++.|++||||++++.|++|+|++++|+++
T Consensus 155 mGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~ 234 (345)
T PRK14466 155 MGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIK 234 (345)
T ss_pred eeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHH
Confidence 99999999999999999999888999999999999999999999999987788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 351 ~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
++++++++| ..+++++|++||+||+|+||+++|+.+|++++++++++||||||||.++..|++|+.+.+++|+++|+++
T Consensus 235 ~l~~al~~y-~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~ 313 (345)
T PRK14466 235 EIIDLLKNY-DFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSH 313 (345)
T ss_pred HHHHHHHHH-HHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHC
Confidence 999999984 7889999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCeEEEccCCCCccccccccccccCCC
Q 011838 431 GCTVFLRLSRGDDQMAACGQLGNPGAI 457 (476)
Q Consensus 431 Gi~v~vR~~~G~di~aaCGqL~~~~~~ 457 (476)
|+.|++|.++|+||+||||||+.+..+
T Consensus 314 gi~~tvR~s~G~dI~aACGQL~~~~~~ 340 (345)
T PRK14466 314 GVFTTIRASRGEDIFAACGMLSTAKQE 340 (345)
T ss_pred CCcEEEeCCCCCchhhcCccchhhhhh
Confidence 999999999999999999999886544
No 6
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-84 Score=670.28 Aligned_cols=340 Identities=40% Similarity=0.627 Sum_probs=323.2
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
.+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.|.|||+
T Consensus 4 ~~~~l~~~~~~el~~~~~~~g~~~~ra~qi~~w~y~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 81 (372)
T PRK11194 4 KKINLLDLNRQQMREFFAELGEKPFRADQVMKWIYHYG--CDDFDEMTNINKVLREKLKEVAEIRAPEVAEEQRSSDGTI 81 (372)
T ss_pred cccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhcccccCCcccceEEEcCCCeE
Confidence 46789999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhccc----CCCeE
Q 011838 191 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSIT 266 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~----~~~i~ 266 (476)
||||+++| ..||+|+||+ ++|.|+|||||+||+++|.||+|+.+|+.|+++++||++|+..+..++... +.+++
T Consensus 82 K~l~~l~D-~~iEsV~~~~-~~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~ 159 (372)
T PRK11194 82 KWAIAVGD-QRVETVYIPE-DDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPIT 159 (372)
T ss_pred EEEEEcCC-CeEEEEEEEc-CCCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccc
Confidence 99999999 9999999998 578999999999999999999999999999999999999999988777542 23599
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011838 267 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 346 (476)
Q Consensus 267 nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~ 346 (476)
|||||||||||+|+|+|.++++.+.++.|+++++++|+|+|+|+.|.+.++++..++.|++|||+++++.|++|||++++
T Consensus 160 nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~ 239 (372)
T PRK11194 160 NVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDEIVPINKK 239 (372)
T ss_pred eEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhccCeEEEeeccCCCHHHHHHhcCCccc
Confidence 99999999999999999999999998999999999999999999999999999888999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhCC---CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHH
Q 011838 347 YKLGLLIETLREELHFKNN---YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 423 (476)
Q Consensus 347 ~~le~vleal~~~l~~~~g---~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f 423 (476)
|+++++++++++| ..+++ ++|++||+||||+||+++++++|++++++++++||||||||.++..|++|+.+++++|
T Consensus 240 ~~l~~ll~a~~~y-~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~~~~~~~ps~e~v~~f 318 (372)
T PRK11194 240 YNIETFLAAVRRY-LEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 318 (372)
T ss_pred ccHHHHHHHHHHH-HHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999985 56664 7999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHhCCCeEEEccCCCCccccccccccccC
Q 011838 424 RNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 455 (476)
Q Consensus 424 ~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~~ 455 (476)
+++|+++|++|++|.++|.||.||||||+.+.
T Consensus 319 ~~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~~ 350 (372)
T PRK11194 319 SKVLMEYGFTVIVRKTRGDDIDAACGQLAGDV 350 (372)
T ss_pred HHHHHHCCCeEEEecCCCCcchhcCcCcHhhh
Confidence 99999999999999999999999999998876
No 7
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.8e-84 Score=663.78 Aligned_cols=340 Identities=37% Similarity=0.635 Sum_probs=318.2
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
.|.+|++|+++||++++ .|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.|.|||+
T Consensus 1 ~~~~l~~~~~~el~~~~----~~~~ra~qi~~~~~~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 74 (356)
T PRK14462 1 MKKNIYDFTLEELSELL----KPSFRAKQIYQWLYAKY--ATSFDDMKNLPKDLREYLAQEFTLDPLKIVKVEQSKDGSK 74 (356)
T ss_pred CCCccccCCHHHHHHHh----ccchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCcceEEEEEcCCCeE
Confidence 36789999999999999 39999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccC------------CCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHh
Q 011838 191 KILFMLDDGLVIETVVIPCN------------RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL 258 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~------------~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l 258 (476)
||||+++||..||+|+||+. .+|.|+|||||+||+++|.||+++++|+.|+++++||++|+..+.+++
T Consensus 75 K~l~~l~Dg~~iEtV~i~~~~~~~~~~~~~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~ 154 (356)
T PRK14462 75 KYLFKLRDGHTVEAVLLKMKDEKIDEEGKILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDN 154 (356)
T ss_pred EEEEEcCCCCEEEEEEeeccccccccccccccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhh
Confidence 99999999999999999963 258999999999999999999999999999999999999999887665
Q ss_pred cccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHH
Q 011838 259 SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVR 337 (476)
Q Consensus 259 ~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r 337 (476)
......+.+||||||||||+|+|+|.++++.++++.|+++|+|+|+|+|+|+.+.+.+|++.. .+.|++|||+++++.|
T Consensus 155 ~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r 234 (356)
T PRK14462 155 NIPYEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELR 234 (356)
T ss_pred hccccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHH
Confidence 322234789999999999999999999999887778999999999999999999999998875 5889999999999999
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcH
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 417 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~ 417 (476)
+++||++++|+++++++++++| ..+++++|+|||+||+|+||+++++++|++++++++++||||||||.++..|++|+.
T Consensus 235 ~~l~pv~~~~~l~~ll~~l~~y-~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~ 313 (356)
T PRK14462 235 SELMPINKAYNIESIIDAVRKF-PIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSL 313 (356)
T ss_pred HHhCCCCccCCHHHHHHHHHHH-HHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCH
Confidence 9999999999999999999984 678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCCCccccccccccccCCC
Q 011838 418 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 457 (476)
Q Consensus 418 e~i~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~~~~ 457 (476)
+.+++|+++|+++|+.|+||.++|+||.||||||+.+...
T Consensus 314 e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~~~ 353 (356)
T PRK14462 314 EDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKKLS 353 (356)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhhcc
Confidence 9999999999999999999999999999999999876543
No 8
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=8.3e-84 Score=663.86 Aligned_cols=344 Identities=41% Similarity=0.687 Sum_probs=324.7
Q ss_pred CCCCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCC
Q 011838 109 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 188 (476)
Q Consensus 109 ~~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg 188 (476)
++.+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.|.||
T Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg 80 (355)
T TIGR00048 3 KSPKPSLYDLTLQELRQWLKDLGEKPFRAKQIYKWLYHKG--KDSFDDMTNLSKDLREKLNRVFEIRTPEIAHEQRSVDG 80 (355)
T ss_pred CCCCCCcccCCHHHHHHHHHHcCCCchhHHHHHHHHHHcC--CCCHHHccccCHHHHHHHhhcEEeCCcceeEEEEcCCC
Confidence 3466789999999999999999999999999999999999 67999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEE
Q 011838 189 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNV 268 (476)
Q Consensus 189 t~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nI 268 (476)
|+||||+++||..||+|+||+ .+|.|+|||+|+|||++|.||+++..|+.++++++||++|+..+..++...+.+++||
T Consensus 81 t~K~l~~~~dg~~iE~V~i~~-~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nV 159 (355)
T TIGR00048 81 TIKYLFKLGDGQTIETVLIPE-KDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNV 159 (355)
T ss_pred eEEEEEEcCCCCEEEEEEEEe-CCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEE
Confidence 999999999999999999998 6799999999999999999999999999999999999999998877665444579999
Q ss_pred EEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011838 269 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKY 347 (476)
Q Consensus 269 vf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~ 347 (476)
|||||||||+|++++.++++.+.+..|++|+.++++|+|||+.+.+.+++++. ++.|++|||+++++.|++|+|++++|
T Consensus 160 vfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~ 239 (355)
T TIGR00048 160 VFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKY 239 (355)
T ss_pred EEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCC
Confidence 99999999999999999999887778999999999999999999999999966 78899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L 427 (476)
+++++++++++| ..+++++|++||++|+|+||+++++++|++++++++++||+|||||+++..|++|+.+++++|+++|
T Consensus 240 ~l~~ll~~l~~~-~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 318 (355)
T TIGR00048 240 NIETLLAAVRRY-LNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTL 318 (355)
T ss_pred CHHHHHHHHHHH-HHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999984 6788999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HhCCCeEEEccCCCCccccccccccccCC
Q 011838 428 AGAGCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 428 ~~~Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
.++|+.|++|.++|.||+||||||+.+..
T Consensus 319 ~~~gi~v~iR~~~G~di~aaCGqL~~~~~ 347 (355)
T TIGR00048 319 MSYGFTVTIRKSRGDDIDAACGQLRAKDV 347 (355)
T ss_pred HHCCCeEEEeCCCCcchhhcCCcchhhhc
Confidence 99999999999999999999999987653
No 9
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7e-84 Score=661.43 Aligned_cols=335 Identities=40% Similarity=0.630 Sum_probs=315.8
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCeEE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 192 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~ 192 (476)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.|.+..+++. .+.+.|||+||
T Consensus 2 ~~l~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~-~~~~~dgt~K~ 78 (348)
T PRK14467 2 ENIKNYNLEELEEFVVELGWEKYRAKQIAKWVYKKK--VTDFDEMTDLSKEDRQLLKENFEFHTLELL-DRVEADDSVKY 78 (348)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhcCcccCCceee-EEEcCCCeEEE
Confidence 578999999999999999999999999999999998 679999999999999999999999999988 56668999999
Q ss_pred EEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec
Q 011838 193 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 272 (476)
Q Consensus 193 l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G 272 (476)
||+++||..||+|+||+ .+|.|+|||||+||+++|.||++++.|+.|+++++||++|+..+..++.. .++.+|||||
T Consensus 79 l~~~~dg~~vE~V~i~~-~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~--~~v~~VvfmG 155 (348)
T PRK14467 79 LFKTKDGHTIETVLIKE-RDHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGE--NRIRNVVFMG 155 (348)
T ss_pred EEEcCCCCEEEEEEEEe-CCCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcc--CCCCeEEEEc
Confidence 99999999999999998 67899999999999999999999999999999999999999988776532 3689999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011838 273 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKL 349 (476)
Q Consensus 273 mGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~l 349 (476)
|||||+|+|+|.++++.++++.|+++++|+++|+|||+.+.+.+++.+. .+.|++|||+++++.|++|+|+++++++
T Consensus 156 mGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l 235 (348)
T PRK14467 156 MGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTL 235 (348)
T ss_pred cChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCH
Confidence 9999999999999999988889999999999999999999999888653 6789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeccCCCCCCCCCCcHHHHHHHHHHH
Q 011838 350 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 350 e~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~--~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L 427 (476)
+++++++++| ..+++++|++||+||||+||+++++++|++++++++ ++||||||||.++..|++|+.+++++|+++|
T Consensus 236 ~~l~~~~~~~-~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 314 (348)
T PRK14467 236 EELMEVLKQY-PLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKIL 314 (348)
T ss_pred HHHHHHHHHH-HHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999984 678999999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HhCCCeEEEccCCCCcccccccccccc
Q 011838 428 AGAGCTVFLRLSRGDDQMAACGQLGNP 454 (476)
Q Consensus 428 ~~~Gi~v~vR~~~G~di~aaCGqL~~~ 454 (476)
+++|+.|++|.++|+||+||||||+.+
T Consensus 315 ~~~gi~v~vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 315 WDNGISTFVRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred HHCCCcEEEeCCCCcchhhcccchhHh
Confidence 999999999999999999999999864
No 10
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.3e-83 Score=654.66 Aligned_cols=334 Identities=37% Similarity=0.597 Sum_probs=315.0
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHH-HhccccceEeEEEecCCCCeE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE-HAEFRALSLKDILTSSDGTRK 191 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~-~~~~~~~~~~~~~~s~Dgt~K 191 (476)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++ +|.+..+++...+.|.|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~w~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 79 (345)
T PRK14457 2 KPLLGRSLAELEDWAVAQGQPAFRGRQLHDWLYNKG--VRSLDEISVLPKAWRESLKDDGVPIGRLTIVERSVAPDGTLK 79 (345)
T ss_pred CccccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHcCccCHHHHHHHhhcCccccCceEEEEEEcCCCcEE
Confidence 479999999999999999999999999999999999 67999999999999999999 699999999999999999999
Q ss_pred EEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe
Q 011838 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 271 (476)
Q Consensus 192 ~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~ 271 (476)
|||+++||..||+|+||+ .+|.|+|||||+|||++|.||+++..|+.++++++||++|+..+.+++. .++++||||
T Consensus 80 ~l~~l~dg~~iE~v~~~~-~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~---~~~~~Ivfm 155 (345)
T PRK14457 80 LLLSTEDGEIIETVGIPT-EKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ---RRVSHVVFM 155 (345)
T ss_pred EEEEcCCCCEEEEEEEEc-CCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 999999999999999998 6799999999999999999999999999999999999999998876552 368999999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-------CeEEEEeeCCCCHHHHhhHcCCC
Q 011838 272 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-------NCALAVSLNATTDEVRNWIMPIN 344 (476)
Q Consensus 272 GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-------~~~LaISLda~~de~r~~I~p~~ 344 (476)
||||||+|+++|+++++.+.++ ++++.++|+|+|+|+.+.+.+|++.. ++.|++|||+++++.|++|+|++
T Consensus 156 GmGEPlln~~~v~~~i~~l~~~--~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~ 233 (345)
T PRK14457 156 GMGEPLLNIDEVLAAIRCLNQD--LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSA 233 (345)
T ss_pred ecCccccCHHHHHHHHHHHhcc--cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCc
Confidence 9999999999999999988665 45788999999999999999998765 67899999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHH
Q 011838 345 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 424 (476)
Q Consensus 345 ~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~ 424 (476)
++|+++++++++++| ..+++++|++||+||||+||+++++++|++++++++++||||||||.++..|++|+.+++++|+
T Consensus 234 ~~~~l~~l~~~~~~y-~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~ 312 (345)
T PRK14457 234 KNYPIENLLEDCRHY-VAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQ 312 (345)
T ss_pred cCCCHHHHHHHHHHH-HHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 999999999999985 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEccCCCCccccccccccccC
Q 011838 425 NILAGAGCTVFLRLSRGDDQMAACGQLGNPG 455 (476)
Q Consensus 425 ~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~~ 455 (476)
++|+++|+.|++|.++|.||+||||||+.+.
T Consensus 313 ~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~ 343 (345)
T PRK14457 313 RVLEQRGVAVSVRASRGLDANAACGQLRRNA 343 (345)
T ss_pred HHHHHCCCeEEEeCCCCCchhhccccchhcc
Confidence 9999999999999999999999999998753
No 11
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.4e-82 Score=649.74 Aligned_cols=336 Identities=37% Similarity=0.606 Sum_probs=318.3
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEec-CCCCeE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTS-SDGTRK 191 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s-~Dgt~K 191 (476)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.| .|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~~dgt~k 79 (342)
T PRK14454 2 KNILDFTLEELKEWMKENGEKKFRAKQIFDWIYKKG--VTDFDEMTNIPKNLREKLKENFYIGIPKIVKKLVSKIDGTVK 79 (342)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHHhceecCCccEEEEEEecCCCeEE
Confidence 578999999999999999999999999999999999 67999999999999999999999999999999887 499999
Q ss_pred EEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe
Q 011838 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 271 (476)
Q Consensus 192 ~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~ 271 (476)
|||+++||..||+|+||+ ..|.|+|||||+||+|+|.||+++..|+.|++|++||++|+.....++. ..+.+||||
T Consensus 80 ~l~~~~dg~~iE~V~i~~-~~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~---~~~~gvV~m 155 (342)
T PRK14454 80 FLFELEDGNIIESVVMKY-KHGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIG---ERISNIVLM 155 (342)
T ss_pred EEEEcCCCCEEEEEEEEE-cCCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhc---CCCCCEEEE
Confidence 999999999999999998 5789999999999999999999999999999999999999999877663 257899999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011838 272 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLG 350 (476)
Q Consensus 272 GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le 350 (476)
||||||+|+|+|.++++.+.++.|+++|+|+++|+|+|+.|.+.++++.. .+.|++|||+++++.|++++|++++|+++
T Consensus 156 ggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~ 235 (342)
T PRK14454 156 GSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIE 235 (342)
T ss_pred CCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHH
Confidence 99999999999999999887678999999999999999999999999875 67789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 351 ~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
++++++++| ...+++++++||+||||+||+++++++|+++++++.++|||+||||.++..|++|+.+++++|+++|+++
T Consensus 236 ~l~~~~~~~-~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~ 314 (342)
T PRK14454 236 ELIEACKYY-INKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKN 314 (342)
T ss_pred HHHHHHHHH-HHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999985 6789999999999999999999999999999999989999999999998899999999999999999999
Q ss_pred CCeEEEccCCCCccccccccccccC
Q 011838 431 GCTVFLRLSRGDDQMAACGQLGNPG 455 (476)
Q Consensus 431 Gi~v~vR~~~G~di~aaCGqL~~~~ 455 (476)
|+.|++|.++|+||+||||||+.+.
T Consensus 315 gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 315 GIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred CCcEEEeCCCCCchhhcCcccchhh
Confidence 9999999999999999999998754
No 12
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.1e-82 Score=650.80 Aligned_cols=342 Identities=36% Similarity=0.634 Sum_probs=323.7
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+||+|+|||+++|+.|.++|.+..+++...+.|.|||+
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~ 86 (356)
T PRK14455 9 MKPSIYSLTLDELQEWLVEQGEKKFRATQIWDWLYRKR--VQSFEEMTNLSKDLREKLNDNFVVTTLKTRVKQESKDGTI 86 (356)
T ss_pred cCcccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhcccCHHHHHHHhcccccCCccEEEEEEcCCCcE
Confidence 56689999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEE
Q 011838 191 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 270 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf 270 (476)
||||+++||..||+|+||+ .+|.|+|||||+|||++|.||+++..++.++++++||++|+..+..++...++++++|||
T Consensus 87 K~l~~~~dg~~ie~V~~~~-~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~ 165 (356)
T PRK14455 87 KFLFELPDGYLIETVLMRH-EYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVV 165 (356)
T ss_pred EEEEEcCCCCEEEEEEEEe-cCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEE
Confidence 9999999999999999998 678999999999999999999999999999999999999999877666544567999999
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011838 271 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKL 349 (476)
Q Consensus 271 ~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~l 349 (476)
|||||||+|++++.++++.+.+..|+++|.++++|+|||+.+.+.++++.. +++|++|||+++++.|++++|+++++++
T Consensus 166 ~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l 245 (356)
T PRK14455 166 MGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPL 245 (356)
T ss_pred eccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCH
Confidence 999999999999999999887778999999999999999999999999876 7889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh
Q 011838 350 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 350 e~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~ 429 (476)
++++++++. +....+++|+++|+||+|+||+++++++|++++++++++|||+||||.++..|.+|+.+.+.+|+++|.+
T Consensus 246 ~~Il~~l~~-~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 246 EKLMEAIEY-YIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred HHHHHHHHH-HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999998 4667889999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCeEEEccCCCCccccccccccccCC
Q 011838 430 AGCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 430 ~Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
+|+.|++|.++|.||+||||||+.+..
T Consensus 325 ~gi~v~ir~~~g~di~aaCGqL~~~~~ 351 (356)
T PRK14455 325 NGVNCTIRREHGTDIDAACGQLRAKER 351 (356)
T ss_pred CCCcEEEeCCCCcchhhcCccchhhhh
Confidence 999999999999999999999988654
No 13
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1e-81 Score=647.80 Aligned_cols=341 Identities=38% Similarity=0.653 Sum_probs=320.3
Q ss_pred cccCCCCHHHHHHHHH-HCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCeE
Q 011838 113 VLLKGMSFTELQQWVR-SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 191 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~-~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K 191 (476)
.+|++|+++||++++. ++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|.++|.+..+++...+.|.|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K 79 (354)
T PRK14460 2 TNILNLTYPELEAFITAELGEPRFRARQIWQWLWQKG--ARDFDSMTNVSKALRARLAEKAVINWPEVETVQTSSDGTVK 79 (354)
T ss_pred CCcccCCHHHHHHHHHHhcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcceecCCcceeEEEEcCCCcEE
Confidence 5799999999999999 99999999999999999999 57999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCC--C-eEEE
Q 011838 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--S-ITNV 268 (476)
Q Consensus 192 ~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~--~-i~nI 268 (476)
|||+++||..||+|+||+..+|.|+|+|+|+|||++|.||++|.+++.|+++++||++|+..+..++...+. . ++||
T Consensus 80 ~l~~~~dg~~iE~V~~p~~~~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nI 159 (354)
T PRK14460 80 FLLRLADGALVETVLIPSKSRRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNL 159 (354)
T ss_pred EEEEcCCCCEEEEEEeEcCCCceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEE
Confidence 999999999999999998544999999999999999999999999999999999999999887766643322 2 8999
Q ss_pred EEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 269 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 269 vf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
+||||||||+|+++|+++++.+.++.|++++.++++|+|||+.+.+++|.+.+.+.|+||||+++++.|++|+|.+++|+
T Consensus 160 vfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~ 239 (354)
T PRK14460 160 VFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWP 239 (354)
T ss_pred EEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCC
Confidence 99999999999999999999887778999999999999999988899988877678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~ 428 (476)
++++++++++| ..+++++|++||+||+|+||+++++++|++++++++++||||||||..+..|++|+.+++++|+++|+
T Consensus 240 l~~ll~al~~~-~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~ 318 (354)
T PRK14460 240 LDDLIAALKSY-PLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLW 318 (354)
T ss_pred HHHHHHHHHHH-HHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999984 67888999999999999999999999999999999999999999999998999999999999999999
Q ss_pred hCCCeEEEccCCCCccccccccccccCC
Q 011838 429 GAGCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 429 ~~Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
++|+.|++|.++|.||+||||||+.+..
T Consensus 319 ~~Gi~vtir~~~G~di~aaCGqL~~~~~ 346 (354)
T PRK14460 319 SKGITAIIRKSKGQDIKAACGQLKAEEL 346 (354)
T ss_pred HCCCeEEEeCCCCCchHhccccchhhhh
Confidence 9999999999999999999999987643
No 14
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-81 Score=645.13 Aligned_cols=341 Identities=46% Similarity=0.721 Sum_probs=322.9
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCe
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 190 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 190 (476)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~ 80 (349)
T PRK14463 3 EKTDIKNLTLQELEAFLAGQGKERFRAKQIFKWLYQRD--ARSFAEMTNLSKDLRAELEETARISNLEPEAVEVSRDGTR 80 (349)
T ss_pred cccccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHhC--CCCHHHhcccCHHHHHhhcCCeeecCcceeEEEEcCCCcE
Confidence 35689999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEE
Q 011838 191 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 270 (476)
Q Consensus 191 K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf 270 (476)
||||+++||..||+|+||+ ++|.|+|||+|+|||++|.||+++..++.++++++||++|+..+.+. .++++|+|
T Consensus 81 k~l~~~~dg~~iE~V~~~~-~~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~-----~~i~~Ivf 154 (349)
T PRK14463 81 KYLFRLEDGNAVESVLIPD-EDRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRD-----VPVRNIVF 154 (349)
T ss_pred EEEEEcCCCCeEEEEEEEe-cCCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCccEEEE
Confidence 9999999999999999998 67899999999999999999999988889999999999999876532 36899999
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011838 271 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 350 (476)
Q Consensus 271 ~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le 350 (476)
|||||||+|+++++++++.+.+..|++++.++++|+|||+++.+.++++..+++|+||||+++++.|++|+|++++++++
T Consensus 155 mG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~ 234 (349)
T PRK14463 155 MGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLA 234 (349)
T ss_pred ecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHH
Confidence 99999999999999999988777899999999999999999999999887778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 351 ~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
++++++++ +...++++|++||+|++|+||+++++++|++++++++++||||||||.++..|++|+.+++++|+++|+++
T Consensus 235 ~l~~a~~~-~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~~ 313 (349)
T PRK14463 235 ELLAACKA-FPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDK 313 (349)
T ss_pred HHHHHHHH-HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 99999998 46778899999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCeEEEccCCCCccccccccccccCCCCCC
Q 011838 431 GCTVFLRLSRGDDQMAACGQLGNPGAIQAP 460 (476)
Q Consensus 431 Gi~v~vR~~~G~di~aaCGqL~~~~~~~~~ 460 (476)
|+.|++|.++|.||+||||||+.+.+..||
T Consensus 314 gi~v~vR~~~G~di~aaCGqL~~~~~~~~~ 343 (349)
T PRK14463 314 HVTVITRSSRGSDISAACGQLKGKLDKAPP 343 (349)
T ss_pred CceEEEeCCCCcchhhccCcccccccCCCC
Confidence 999999999999999999999998877665
No 15
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.4e-81 Score=646.95 Aligned_cols=340 Identities=35% Similarity=0.540 Sum_probs=318.2
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEec-----
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTS----- 185 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s----- 185 (476)
.+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|
T Consensus 16 ~~~~~~~~~~~el~~~~~~~g~~~~r~~qi~~w~y~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~~~ 93 (368)
T PRK14456 16 ELQNIRNLRRQELTELLARLGEPAWRAAQLHQWLFSHR--ALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEGSP 93 (368)
T ss_pred CCCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccCCC
Confidence 45689999999999999999999999999999999999 67999999999999999999999999999988887
Q ss_pred CCCCeEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcc--cCC
Q 011838 186 SDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVG 263 (476)
Q Consensus 186 ~Dgt~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~--~~~ 263 (476)
.|||+||||+++||..||+|+||. .+|.|+|||+|+|||++|.||+++.+++.|+++++||++|+..+.+.+.. ...
T Consensus 94 ~dgt~K~l~~l~dg~~iEtV~i~~-~~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~ 172 (368)
T PRK14456 94 AGPTEKLLIKLPDGELVETVLIPG-PERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRER 172 (368)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEec-CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccC
Confidence 577999999999999999999997 68999999999999999999999999999999999999999776544322 124
Q ss_pred CeEEEEEecCCcccCCHHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHc
Q 011838 264 SITNVVFMGMGEPLHNVENVIKAANIMVHE-QGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIM 341 (476)
Q Consensus 264 ~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~-~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~ 341 (476)
+++||+||||||||+|+|+|.++++++.+. .+++++.++|+++|||+.+.+.+|++.+ ++.|+||||+++++.|++|+
T Consensus 173 ~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~ 252 (368)
T PRK14456 173 GITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLM 252 (368)
T ss_pred CccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhc
Confidence 699999999999999999999999988774 7888999999999999999999999988 67899999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHH
Q 011838 342 PINR-KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 420 (476)
Q Consensus 342 p~~~-~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i 420 (476)
|+++ +|+++++++++++| ..+++.+|+++|+|++|+||+++++++|++++++++++||+|||||.++.+|.+|+.+.+
T Consensus 253 P~~~~~~~l~~l~~~i~~~-~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i 331 (368)
T PRK14456 253 PQAARDYPLDELREALIGY-ASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTR 331 (368)
T ss_pred cccCCCCCHHHHHHHHHHH-HHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHH
Confidence 9985 89999999999984 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEccCCCCcccccccccccc
Q 011838 421 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 454 (476)
Q Consensus 421 ~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~ 454 (476)
++|+++|+++|+.|+||.++|+||+||||||+.+
T Consensus 332 ~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 332 ERFRDRLLDAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred HHHHHHHHHCCCcEEeeCCCCcchhhcCCcchhc
Confidence 9999999999999999999999999999999875
No 16
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.6e-81 Score=641.69 Aligned_cols=330 Identities=35% Similarity=0.544 Sum_probs=310.7
Q ss_pred CCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCeEEEEE
Q 011838 116 KGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 195 (476)
Q Consensus 116 ~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~l~~ 195 (476)
++|+++||++++.++|+|+|||+|||+|+|+++ +. |++|+|||+++|+.|.+.+.+..+++.+.+.|.|||+||||+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~--~~-~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~t~k~l~~ 78 (336)
T PRK14470 2 LHLSGQDSRALARPAGISLEDARRITGAVIGRG--AP-LRSARNVRRSVLDEVDALATPGELRLVERVDAKDGFRKYLFE 78 (336)
T ss_pred CCCCHHHHHHHHHHcCCCcHHHHHHHHHHHhCC--CC-HHHhccCCHHHHHHHhcccccCCceEEEEEEcCCCcEEEEEE
Confidence 689999999999999999999999999999998 56 999999999999999999999999999999999999999999
Q ss_pred ecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc
Q 011838 196 LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE 275 (476)
Q Consensus 196 l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE 275 (476)
++||..||+|+||+..+|.|+|||+|+|||++|.||+++++++.|+++++||++|+..+.+.. ...+++||||||||
T Consensus 79 l~dg~~iE~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~---~~~i~nIvfmGmGE 155 (336)
T PRK14470 79 LPDGLRVEAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADS---ERPITGVVFMGQGE 155 (336)
T ss_pred cCCCCEEEEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhc---CCCCCEEEEEecCc
Confidence 999999999999964578999999999999999999999999999999999999998765433 24689999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHH
Q 011838 276 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 354 (476)
Q Consensus 276 PLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vle 354 (476)
||+|++++.++++.+.+..|++++.++|+|+|||+.|.+.++++++ ++.|+|||||++++.|++|+|++++++++++++
T Consensus 156 PllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ 235 (336)
T PRK14470 156 PFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVE 235 (336)
T ss_pred cccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHH
Confidence 9999999999999998888999999999999999999999999887 488999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHH--HhCCC
Q 011838 355 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNIL--AGAGC 432 (476)
Q Consensus 355 al~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L--~~~Gi 432 (476)
++++| .+. +++++++|++|+|+||+++++++|++++++++++||+|||||.++ .|++|+.+++++|+++| +++|+
T Consensus 236 ai~~~-~~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~-~~~~p~~~~i~~f~~~l~~~~~g~ 312 (336)
T PRK14470 236 AIREH-AAL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATG-RYRPPDEDEWNAFRDALARELPGT 312 (336)
T ss_pred HHHHH-HHh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCC-CccCCCHHHHHHHHHHHHHccCCe
Confidence 99984 555 889999999999999999999999999999999999999999766 89999999999999999 48899
Q ss_pred eEEEccCCCCcccccccccccc
Q 011838 433 TVFLRLSRGDDQMAACGQLGNP 454 (476)
Q Consensus 433 ~v~vR~~~G~di~aaCGqL~~~ 454 (476)
.|++|.++|+||+||||||+.+
T Consensus 313 ~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 313 PVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred EEEEECCCCCChHhccCccccc
Confidence 9999999999999999999864
No 17
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.8e-80 Score=632.98 Aligned_cols=333 Identities=32% Similarity=0.506 Sum_probs=310.9
Q ss_pred CCHHHHHHHHHHCCCCcchHHHHH-HHHhcCCCccCC--chhhcCCCHHHHHHHHHH-hccccceEeEEEe-cCCCCeEE
Q 011838 118 MSFTELQQWVRSHAFRPGQALMLW-KRLYGDDIWAHC--TDELEGLNKDFKKMLSEH-AEFRALSLKDILT-SSDGTRKI 192 (476)
Q Consensus 118 l~~~el~~~~~~~g~~~~ra~qi~-~~l~~~~~~~~~--~~~~~~l~~~~r~~L~~~-~~~~~~~~~~~~~-s~Dgt~K~ 192 (476)
|+++||++++.++|+|+|||+||| +|+|+++ +.+ |++|+|||+++|+.|.+. |.+..+++...+. |.|||+||
T Consensus 1 ~~~~el~~~~~~~g~~~~ra~Qi~~~w~~~~~--~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dgt~K~ 78 (344)
T PRK14464 1 MRIQDLRQRLRALGAKPCHEGRILRAWLQGLP--LDTRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDGSARL 78 (344)
T ss_pred CCHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--CCccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCCcEEE
Confidence 678999999999999999999999 5999999 568 799999999999999999 8998898777766 68999999
Q ss_pred EEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec
Q 011838 193 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 272 (476)
Q Consensus 193 l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G 272 (476)
||+++||..||+|+||. .|+|||||+||+++|.||++|.+|+.|+++++||++|+..+.+. .+++||||||
T Consensus 79 l~~l~Dg~~iEtV~i~~----~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~-----~~i~nIVfmG 149 (344)
T PRK14464 79 LVELADGQMVESVLLPR----DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR-----RAVKKVVFMG 149 (344)
T ss_pred EEEcCCCCEEEEEEecC----CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCCEEEEec
Confidence 99999999999999984 59999999999999999999999999999999999999987542 4699999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 273 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 273 mGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
|||||+|+|+++++++.+.+. .+|+.++++|||.|.++.+.+|.++. .+.|++|||+++++.|++|+|++++|++++
T Consensus 150 mGEPl~N~d~vl~ai~~l~~~--~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~e 227 (344)
T PRK14464 150 MGEPAHNLDNVLEAIDLLGTE--GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEE 227 (344)
T ss_pred cCcccCCHHHHHHHHHHhhch--hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHH
Confidence 999999999999999988766 36789999999999999999999854 678899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCC
Q 011838 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 431 (476)
Q Consensus 352 vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~G 431 (476)
+++++++| .+.+|++|++||+|++|+||+++++++|++++++++++||+|||||+++..|.+|+.+++++|++.|+++|
T Consensus 228 l~~a~~~~-~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~~g 306 (344)
T PRK14464 228 LVELGEAY-ARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHRRG 306 (344)
T ss_pred HHHHHHHH-HHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHHCC
Confidence 99999984 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCccccccccccccCCCCCCCCCC
Q 011838 432 CTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRV 464 (476)
Q Consensus 432 i~v~vR~~~G~di~aaCGqL~~~~~~~~~~~~~ 464 (476)
+.|++|.++|+||+||||||+.+..+.+|.-|.
T Consensus 307 i~~tiR~~~G~di~aACGqL~~~~~~~~~~~~~ 339 (344)
T PRK14464 307 VLTKVRNSAGQDVDGGCGQLRARAAKAAAVRRI 339 (344)
T ss_pred ceEEEECCCCCchhhcCcchhhhhccccccccc
Confidence 999999999999999999999988888887664
No 18
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.9e-79 Score=628.85 Aligned_cols=332 Identities=38% Similarity=0.583 Sum_probs=310.1
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCCeEE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 192 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~ 192 (476)
..|.+++++|| |+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+||
T Consensus 2 ~~~~~~~~~~~-------~~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~ 72 (343)
T PRK14468 2 QPLLELHPDAL-------PGEGYRRAQLAEWLYAQG--ARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDGSVKY 72 (343)
T ss_pred cccccCCHHHc-------CCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCceEEEEEEcCCCcEEE
Confidence 35789999998 999999999999999999 679999999999999999999999999999999999999999
Q ss_pred EEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec
Q 011838 193 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 272 (476)
Q Consensus 193 l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G 272 (476)
||+++||..||+|+||+ .+|.|+|||+|+|||++|.||+++..++.++++++||++|+..+....+....++++|||||
T Consensus 73 l~~~~dg~~iE~V~i~~-~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~G 151 (343)
T PRK14468 73 LFTLLDGKQTEAVYMPY-LDRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMG 151 (343)
T ss_pred EEECCCCCEEEEEEEEe-cCCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEec
Confidence 99999999999999998 68999999999999999999999999999999999999999876543211124589999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 273 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 273 mGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
|||||+|+++|+++++.+.++.|+++++++++++|||+.+.++++++.. ++.|++|||+++++.|++|+|.++++++++
T Consensus 152 mGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ 231 (343)
T PRK14468 152 MGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAE 231 (343)
T ss_pred cCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHH
Confidence 9999999999999999887888999999999999999999999999876 678999999999999999999998999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCC
Q 011838 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 431 (476)
Q Consensus 352 vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~G 431 (476)
+++++++| ..+++++|++||+|++|+||+++++++|+++++++.++||+|||||+.+..+++|+.+++++|+++|.++|
T Consensus 232 ll~~l~~~-~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~G 310 (343)
T PRK14468 232 IMAAVRHY-QAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLERRG 310 (343)
T ss_pred HHHHHHHH-HHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999984 67888999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CeEEEccCCCCccccccccccccC
Q 011838 432 CTVFLRLSRGDDQMAACGQLGNPG 455 (476)
Q Consensus 432 i~v~vR~~~G~di~aaCGqL~~~~ 455 (476)
+.|++|.++|.||+||||||+.+.
T Consensus 311 i~vtiR~~~g~di~aaCGqL~~~~ 334 (343)
T PRK14468 311 VPVSVRWSRGRDVGAACGQLALKR 334 (343)
T ss_pred CeEEEeCCCCcchhhcCCccccCC
Confidence 999999999999999999998754
No 19
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=1.4e-79 Score=629.73 Aligned_cols=331 Identities=30% Similarity=0.493 Sum_probs=306.0
Q ss_pred CCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHh--ccccceEeEEEecCCCCeEEEE
Q 011838 117 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA--EFRALSLKDILTSSDGTRKILF 194 (476)
Q Consensus 117 ~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~--~~~~~~~~~~~~s~Dgt~K~l~ 194 (476)
.++++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.| .+..+++...+.| |||+||||
T Consensus 4 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~~s-dgt~K~l~ 80 (347)
T PRK14453 4 KTKYGKMKQILSNLKLPDYRYEQITKAIFKQR--IDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDS-KQVTKVLF 80 (347)
T ss_pred cCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcC--CCCHHHhccCCHHHHHHHHHHHhhccCCceeEEEEec-CCeEEEEE
Confidence 47899999999999999999999999999999 5799999999999999999998 6777888888877 89999999
Q ss_pred EecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC
Q 011838 195 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 274 (476)
Q Consensus 195 ~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG 274 (476)
+++||..||+|+||++.+|.|+|||||+||||+|.||+++.+|+.|+|+++||++|+..+.. .+.++++|+|||||
T Consensus 81 ~l~dg~~iE~V~i~~~~~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~----~~~~i~~IvfmGmG 156 (347)
T PRK14453 81 ELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYL----NGHRLDSISFMGMG 156 (347)
T ss_pred EcCCCCEEEEEEEeecCCceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHh----cCCCcceEEEeecC
Confidence 99999999999999854469999999999999999999999999999999999999986532 12469999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHH
Q 011838 275 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLI 353 (476)
Q Consensus 275 EPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vl 353 (476)
|||+|+ ++.++++.+.+..+++++.++++|+|+|+.|.++++.+.. .+.|++|||+++++.|++++|+++++++++++
T Consensus 157 EPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll 235 (347)
T PRK14453 157 EALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVM 235 (347)
T ss_pred CccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHH
Confidence 999996 5899999998888999999999999999999999998875 67889999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CCeEEEEeccCCCCC--CCCCCcHHHHHHHHHH
Q 011838 354 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI-----PCKINLISFNPHCGS--QFTPTTDEKMIEFRNI 426 (476)
Q Consensus 354 eal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l-----~~~VnLIp~nP~~~~--~~~~ps~e~i~~f~~~ 426 (476)
+++++| ..+++.+|++||+||||+||+++++++|+++++++ .++||||||||.++. .+++|+.+++++|+++
T Consensus 236 ~~~~~~-l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~ 314 (347)
T PRK14453 236 KTLDEH-IRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCST 314 (347)
T ss_pred HHHHHH-HHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 999995 67788999999999999999999999999999987 479999999999765 4999999999999999
Q ss_pred HHhCCCeEEEccCCCCccccccccccccCC
Q 011838 427 LAGAGCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 427 L~~~Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
|+++|+.|++|.++|+||+||||||+.+..
T Consensus 315 L~~~Gi~vtiR~~~G~di~aaCGqL~~~~~ 344 (347)
T PRK14453 315 LKSAGISVTVRTQFGSDISAACGQLYGNYE 344 (347)
T ss_pred HHHCCCcEEEeCCCCCchhhccccchhhhc
Confidence 999999999999999999999999987543
No 20
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=8.6e-79 Score=625.06 Aligned_cols=336 Identities=35% Similarity=0.570 Sum_probs=315.1
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecC-CCCeE
Q 011838 113 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRK 191 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~-Dgt~K 191 (476)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|. |||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~t~k 79 (343)
T PRK14469 2 KNILDLSYEELVSEITELGLEKYRADQILDWIYKKK--VFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDGTTK 79 (343)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCCeEE
Confidence 478999999999999999999999999999999999 679999999999999999999999999999998885 99999
Q ss_pred EEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe
Q 011838 192 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 271 (476)
Q Consensus 192 ~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~ 271 (476)
|||++.||..||+|+||+ ++|.|+|||+|+|||++|.||+++..++.|+++++||++|+..+.+.. ..++++|+||
T Consensus 80 ~l~~~~dg~~ie~v~~~~-~~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~---~~~v~~Vvf~ 155 (343)
T PRK14469 80 FLWELEDGNTIESVMLFH-PDRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEE---KKKVGNVVYM 155 (343)
T ss_pred EEEEcCCCCEEEEEEEec-CCCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhc---cCCcCeEEEE
Confidence 999999999999999998 689999999999999999999999988999999999999998765443 2468999999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011838 272 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLG 350 (476)
Q Consensus 272 GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le 350 (476)
||||||+|+++|.++++++.+..|.+++.++|+++|||+.+.+++|++.+ ++.|+||||+++++.|++++|++++++++
T Consensus 156 GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~ 235 (343)
T PRK14469 156 GMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIE 235 (343)
T ss_pred ccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHH
Confidence 99999999999999999988888888888999999999988999999987 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 351 ~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
++++++++ +...++.+++++|++++|+||+.+++++|++++++++++||++||||..+ .+++|+.+++++|+++|+++
T Consensus 236 ~Il~~l~~-~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~-~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 236 EIINAVKI-YQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVP-GLEKPSRERIERFKEILLKN 313 (343)
T ss_pred HHHHHHHH-HHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCc-cCCCCCHHHHHHHHHHHHHC
Confidence 99999998 46777889999999999999999999999999999999999999999866 68999999999999999999
Q ss_pred CCeEEEccCCCCccccccccccccCC
Q 011838 431 GCTVFLRLSRGDDQMAACGQLGNPGA 456 (476)
Q Consensus 431 Gi~v~vR~~~G~di~aaCGqL~~~~~ 456 (476)
|+.|++|.++|.||+||||||+.+..
T Consensus 314 gi~vtvr~~~g~di~aaCGqL~~~~~ 339 (343)
T PRK14469 314 GIEAEIRREKGSDIEAACGQLRRRNL 339 (343)
T ss_pred CCeEEEeCCCCcchhhcCccchhhhh
Confidence 99999999999999999999987643
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.97 E-value=1.8e-29 Score=247.62 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=170.9
Q ss_pred EEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEE
Q 011838 194 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 270 (476)
Q Consensus 194 ~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf 270 (476)
|.+.||+++.++++ ..|||++|.||+++.. ...+.++++|+++++.....++.. ....|+|
T Consensus 13 ~~~~dg~g~~~~~f-------------~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~---~~~~V~~ 76 (246)
T PRK11145 13 CGTVDGPGIRFITF-------------FQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNA---SGGGVTA 76 (246)
T ss_pred EeeECCCCeEEEEE-------------ECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhc---CCCeEEE
Confidence 45677877777665 6899999999998652 335679999999999876543321 2346889
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch----HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011838 271 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 346 (476)
Q Consensus 271 ~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~----p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~ 346 (476)
+| ||||+|++.+.++++.+ ++.|++ ++++|||+. +.++++++..+ .+.||||+.+++.|+++++.+
T Consensus 77 sG-GEPll~~~~~~~l~~~~-k~~g~~-----i~l~TNG~~~~~~~~~~~ll~~~d-~v~islk~~~~e~~~~~~g~~-- 146 (246)
T PRK11145 77 SG-GEAILQAEFVRDWFRAC-KKEGIH-----TCLDTNGFVRRYDPVIDELLDVTD-LVMLDLKQMNDEIHQNLVGVS-- 146 (246)
T ss_pred eC-ccHhcCHHHHHHHHHHH-HHcCCC-----EEEECCCCCCcchHHHHHHHHhCC-EEEECCCcCChhhcccccCCC--
Confidence 99 99999999888998966 467885 999999985 34556665555 356999999999999998853
Q ss_pred CcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeccCCCCC------------CC
Q 011838 347 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGS------------QF 412 (476)
Q Consensus 347 ~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~--~~VnLIp~nP~~~~------------~~ 412 (476)
.+.++++++. +.+.+.+++++++++||+||++++++++++++++++ .+++++||+|.+.. .+
T Consensus 147 --~~~~l~~i~~--l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 222 (246)
T PRK11145 147 --NHRTLEFARY--LAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGV 222 (246)
T ss_pred --hHHHHHHHHH--HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCC
Confidence 3678888885 467788999999999999999999999999999875 48999999987532 46
Q ss_pred CCCcHHHHHHHHHHHHhCCCeEE
Q 011838 413 TPTTDEKMIEFRNILAGAGCTVF 435 (476)
Q Consensus 413 ~~ps~e~i~~f~~~L~~~Gi~v~ 435 (476)
++|+.+++++|+++++++|++++
T Consensus 223 ~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 223 KPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCHHHHHHHHHHHHHcCCccc
Confidence 78999999999999999998864
No 22
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.95 E-value=3.5e-26 Score=242.34 Aligned_cols=204 Identities=18% Similarity=0.361 Sum_probs=163.9
Q ss_pred CceEEEEEecCCCCCCCCCCCCCC-------CCC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGR-------MGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENV 283 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~-------~g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V 283 (476)
+|.. +..+.|||++|.||.+.. .+. .+.||++|+++++..+.+.+ .++..|+|+|+||||+|++++
T Consensus 24 ~r~~--~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~----~~~~~V~iaG~GEPLl~~e~~ 97 (442)
T TIGR01290 24 ARMH--LAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEI----PQLSVVGIAGPGDPLANIGKT 97 (442)
T ss_pred CEEE--EecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhc----CCCCEEEEecCCCcccCcccc
Confidence 4444 444899999999999752 232 46799999999998876543 357889999999999999989
Q ss_pred HHHHHHHHHhc-CCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC----CCCCc--------
Q 011838 284 IKAANIMVHEQ-GLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPI----NRKYK-------- 348 (476)
Q Consensus 284 ~~ai~~l~~~~-Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~----~~~~~-------- 348 (476)
++.++.+.+.. |+ +++|+|||+. +.+++|++.+-..+.||||+.+++.|++|+|. +++|+
T Consensus 98 ~~~l~~~~~~~~~i-----~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il 172 (442)
T TIGR01290 98 FQTLELVARQLPDV-----KLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLL 172 (442)
T ss_pred HHHHHHHHHhcCCC-----eEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHH
Confidence 99888776553 55 4999999984 56788888763367899999999999998763 22232
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCC--CCCC-----CCCcHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHC--GSQF-----TPTTDEKM 420 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~--~~~~-----~~ps~e~i 420 (476)
++.++++++. +.+.|..++++++++||+|| +++.+++++++++++ .+|++||+|.+ +..| ++|+.+++
T Consensus 173 ~e~~l~~l~~--l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l 248 (442)
T TIGR01290 173 IERQLEGLEK--LTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDEL 248 (442)
T ss_pred HHHHHHHHHH--HHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHH
Confidence 5677899996 46678899999999999998 699999999999875 68999999876 5444 88999999
Q ss_pred HHHHHHHHhC
Q 011838 421 IEFRNILAGA 430 (476)
Q Consensus 421 ~~f~~~L~~~ 430 (476)
+++++.+++.
T Consensus 249 ~~~~~~~~~~ 258 (442)
T TIGR01290 249 AALRDRLEMG 258 (442)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 23
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.94 E-value=5e-25 Score=225.17 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=177.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC----CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM----GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~----g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
..++++.|.+||++|.||+.+.. ...+.++++|+.+.+..+.+ .+++.|.|+| ||||++.+ +.++++.
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~gi~~I~~tG-GEPll~~~-l~~li~~ 88 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA------LGVRKVRLTG-GEPLLRKD-LEDIIAA 88 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEEC-CCCcCccC-HHHHHHH
Confidence 37888999999999999998652 34567999999998876543 2688999999 99999964 7788887
Q ss_pred HHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY- 366 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~- 366 (476)
+.+..|. ..++++|||+. +.+.+|.+.+...|.||||+.+++.++++++. ..+++++++++. ..+.+.
T Consensus 89 i~~~~~~----~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~---~~~~~vl~~i~~--~~~~g~~ 159 (331)
T PRK00164 89 LAALPGI----RDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGR---DRLDQVLAGIDA--ALAAGLT 159 (331)
T ss_pred HHhcCCC----ceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCC---CCHHHHHHHHHH--HHHCCCC
Confidence 6543333 36999999974 45667777775578899999999999987653 579999999997 356676
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHhCCCeEEEc--------
Q 011838 367 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QFTPTTDEKMIEFRNILAGAGCTVFLR-------- 437 (476)
Q Consensus 367 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-~~~~ps~e~i~~f~~~L~~~Gi~v~vR-------- 437 (476)
++.+++++++|+|| +++.+++++++++++.+++++|+|.+.. .+........+++.+.|.+.|+.++.+
T Consensus 160 ~v~i~~vv~~g~n~--~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (331)
T PRK00164 160 PVKVNAVLMKGVND--DEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQ 237 (331)
T ss_pred cEEEEEEEECCCCH--HHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCE
Confidence 89999999999987 6899999999999999999999987643 343333344556666776664433222
Q ss_pred --------------cCCCCccccccccccccCCC--CCCCCCC
Q 011838 438 --------------LSRGDDQMAACGQLGNPGAI--QAPLLRV 464 (476)
Q Consensus 438 --------------~~~G~di~aaCGqL~~~~~~--~~~~~~~ 464 (476)
.+.....|+.|..++.++++ .|||...
T Consensus 238 ~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l~~Cl~~~ 280 (331)
T PRK00164 238 YFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGKLHLCLFAE 280 (331)
T ss_pred EEEECCCCeEEEEEeCCCCcccccCCeEEEcCCCcEEEcCCCC
Confidence 11123578899999999988 7888763
No 24
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.93 E-value=1.2e-23 Score=204.45 Aligned_cols=193 Identities=20% Similarity=0.359 Sum_probs=155.2
Q ss_pred cCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCC
Q 011838 221 QVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~ 297 (476)
+.|||++|.||+++.. ...+.++++++++++.....++.. ....|+|+| ||||++++.+.++++.+ ++.|+.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~---~~~~I~~~G-GEPll~~~~~~~li~~~-~~~g~~ 96 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKA---SGGGVTFSG-GEPLLQPEFLSELFKAC-KELGIH 96 (235)
T ss_pred ECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhc---CCCeEEEeC-cccccCHHHHHHHHHHH-HHCCCC
Confidence 5799999999997642 223568999999998876554321 124689999 99999998888888865 456775
Q ss_pred CCCCeEEEEeCCc----hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 298 FSPRKVTVSTSGL----VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 298 i~~r~ItVsTNG~----~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
+.+.|||+ .+.+.++++..+. +.||+++.+++.|+++++. ++++++++++. +.+.+.++.++++
T Consensus 97 -----~~i~TNG~~~~~~~~~~~ll~~~d~-v~isl~~~~~~~~~~~~g~----~~~~v~~~i~~--l~~~g~~~~v~~v 164 (235)
T TIGR02493 97 -----TCLDTSGFLGGCTEAADELLEYTDL-VLLDIKHFNPEKYKKLTGV----SLQPTLDFAKY--LAKRNKPIWIRYV 164 (235)
T ss_pred -----EEEEcCCCCCccHHHHHHHHHhCCE-EEEeCCCCCHHHHHHHHCC----CcHHHHHHHHH--HHhCCCcEEEEEe
Confidence 89999995 3566777776553 5799999999999998764 46899999986 4677888999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCC--eEEEEeccCCC------------CCCCCCCcHHHHHHHHHHHHhC
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPC--KINLISFNPHC------------GSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~--~VnLIp~nP~~------------~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
+++|+||+.+++++++++++.++. .+.++||+|.+ ...+++|+.+++++++++++++
T Consensus 165 v~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T TIGR02493 165 LVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKEY 235 (235)
T ss_pred eeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999998873 78999999753 2356889999999999998764
No 25
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-24 Score=212.53 Aligned_cols=205 Identities=23% Similarity=0.405 Sum_probs=160.8
Q ss_pred ecCCCCCCCCCCCCCCCCC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCC
Q 011838 220 SQVGCAMNCQFCYTGRMGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 298 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i 298 (476)
++.|||++|.||+++.... .+..+.+++..++........ .....|+|+| |||+++++++.+.++. .++.|+.
T Consensus 41 f~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~---~~~~gvt~SG-GEP~~q~e~~~~~~~~-ake~Gl~- 114 (260)
T COG1180 41 FLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYS---ESGGGVTFSG-GEPTLQAEFALDLLRA-AKERGLH- 114 (260)
T ss_pred EeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhc---CCCCEEEEEC-CcchhhHHHHHHHHHH-HHHCCCc-
Confidence 3799999999999997654 355666666555544333321 3577899999 9999999999999984 5677986
Q ss_pred CCCeEEEEeCCch-H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeC
Q 011838 299 SPRKVTVSTSGLV-P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 376 (476)
Q Consensus 299 ~~r~ItVsTNG~~-p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~ 376 (476)
+++.|||+. + .++++++..|.. .++||+.+++.|+++++.. .+.++++++. +.+.|..++++++++|
T Consensus 115 ----~~l~TnG~~~~~~~~~l~~~~D~v-~~DlK~~~~~~y~~~tg~~----~~~vl~~~~~--l~~~g~~ve~r~lviP 183 (260)
T COG1180 115 ----VALDTNGFLPPEALEELLPLLDAV-LLDLKAFDDELYRKLTGAD----NEPVLENLEL--LADLGVHVEIRTLVIP 183 (260)
T ss_pred ----EEEEcCCCCCHHHHHHHHhhcCeE-EEeeccCChHHHHHHhCCC----cHHHHHHHHH--HHcCCCeEEEEEEEEC
Confidence 999999985 3 456777776654 5999999999999999764 3889999996 4668999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCC--CeEEEEeccCCCCCCCCC-CcHHHHHHHHHHHHhCCCe-EEEccCCC
Q 011838 377 GVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFTP-TTDEKMIEFRNILAGAGCT-VFLRLSRG 441 (476)
Q Consensus 377 GvNDs~ed~~~La~ll~~l~--~~VnLIp~nP~~~~~~~~-ps~e~i~~f~~~L~~~Gi~-v~vR~~~G 441 (476)
|+||+++++++++++++.+. ..+.+.||+|.....+.+ +..+.++++.+..++.|.. +.+-...|
T Consensus 184 g~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~~~v~~~~~~~ 252 (260)
T COG1180 184 GYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEEGLKFVYIGNVPG 252 (260)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhhhHHHHHHhHhhhcccC
Confidence 99999999999999999764 378999999987666644 4567788888888877665 44444444
No 26
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.92 E-value=1.7e-24 Score=220.97 Aligned_cols=253 Identities=18% Similarity=0.238 Sum_probs=169.5
Q ss_pred cCCCHHHHHHHHHHhccccceEeEEEecCCCCeEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCC
Q 011838 158 EGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG 237 (476)
Q Consensus 158 ~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g 237 (476)
.|..+++|.+.-... ....+.||+.|++++..|+..||+|+++| ++| ++|+ +|.|||++|.||++...+
T Consensus 51 ~~~~dpi~~q~~p~~--------~e~~~~~~~~~d~~~~~~~~~v~gl~hkY-~~r-~l~~-~t~~Cn~~Cr~C~~~~~~ 119 (321)
T TIGR03821 51 GDPDDPLLRQVLPLH--------AEFEQHPGYSADPLDEQDANPVPGLLHKY-HGR-VLLI-VTGGCAINCRYCFRRHFP 119 (321)
T ss_pred CCCCCchhhhcCCCH--------HHhccCCCcCCCchhhcCCCcCCeeeeec-CCE-EEEE-eCCCcCCcCcCCCCCCcC
Confidence 345567776653322 12235689999999999999999999998 566 6776 799999999999998765
Q ss_pred CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHH-HHHHHHHHHH---hcCCCCCCCeEEEEeCCchHH
Q 011838 238 LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVEN-VIKAANIMVH---EQGLHFSPRKVTVSTSGLVPQ 313 (476)
Q Consensus 238 ~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~-V~~ai~~l~~---~~Gl~i~~r~ItVsTNG~~p~ 313 (476)
..++....+.++++....+ . ..++.+|+||| ||||++.|. +.++++.+.. -..++|+.|-..+.||-+.++
T Consensus 120 ~~~~~~~~~~~~~~i~~i~---~-~~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~e 194 (321)
T TIGR03821 120 YQENQPNKAQWKEALEYIA---Q-HPEINEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSG 194 (321)
T ss_pred CCCCCCCHHHHHHHHHHHH---h-cCCCCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHH
Confidence 5554333344555433222 1 14789999999 999998765 4455544432 122222222223444534455
Q ss_pred HHHHHh-cC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHH
Q 011838 314 LKQFLN-ES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 391 (476)
Q Consensus 314 i~~L~~-~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~l 391 (476)
+.+.+. .+ ...+.+|+|++. |++ +++.++++. +.+.|..+.+++++++|+||+.+++.+|.+.
T Consensus 195 l~~~L~~~~~~~~~~~h~dh~~-Ei~------------d~~~~ai~~--L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~ 259 (321)
T TIGR03821 195 LCDLLANSRLQTVLVVHINHAN-EID------------AEVADALAK--LRNAGITLLNQSVLLRGVNDNADTLAALSER 259 (321)
T ss_pred HHHHHHhcCCcEEEEeeCCChH-hCc------------HHHHHHHHH--HHHcCCEEEecceeeCCCCCCHHHHHHHHHH
Confidence 554444 34 455557999994 554 346778886 4778999999999999999999999999999
Q ss_pred HhcCCC-eEEEEeccCCCCCCCCCCcHHHHHHHHHHHH----hCCCeEEEccCCC
Q 011838 392 VQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILA----GAGCTVFLRLSRG 441 (476)
Q Consensus 392 l~~l~~-~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~----~~Gi~v~vR~~~G 441 (476)
+..+++ .+.+..+.|.++......+.++..++.+.++ ...++.+|+.-.|
T Consensus 260 l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG~~~P~~v~d~pg 314 (321)
T TIGR03821 260 LFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPGYLVPRLVREIPG 314 (321)
T ss_pred HHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCCCccceeEEEcCC
Confidence 998876 4556666777764433444555555544444 4456678877655
No 27
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.91 E-value=3.9e-23 Score=199.56 Aligned_cols=181 Identities=17% Similarity=0.256 Sum_probs=154.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHH
Q 011838 239 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQ 316 (476)
Q Consensus 239 ~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~ 316 (476)
++.+|++|+++++.+.+.++..++++ |+|+| |||+++++++.++++.+ ++.|++ +++.|||+. +.+.+
T Consensus 16 g~~~t~eel~~~~~~~~~f~~~sggG---Vt~SG-GEPllq~~fl~~l~~~~-k~~gi~-----~~leTnG~~~~~~~~~ 85 (213)
T PRK10076 16 GRDITLDALEREVMKDDIFFRTSGGG---VTLSG-GEVLMQAEFATRFLQRL-RLWGVS-----CAIETAGDAPASKLLP 85 (213)
T ss_pred CcccCHHHHHHHHHhhhHhhcCCCCE---EEEeC-chHHcCHHHHHHHHHHH-HHcCCC-----EEEECCCCCCHHHHHH
Confidence 46799999999999887777544444 56999 99999999999999954 678986 999999986 46777
Q ss_pred HHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 011838 317 FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 396 (476)
Q Consensus 317 L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~ 396 (476)
+++..|..+ +++++.|++.|.++++.+ .+.++++++. +.+.+.++++++++|||+||++++++++++++++++
T Consensus 86 l~~~~D~~l-~DiK~~d~~~~~~~tG~~----~~~il~nl~~--l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 86 LAKLCDEVL-FDLKIMDATQARDVVKMN----LPRVLENLRL--LVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHhcCEEE-EeeccCCHHHHHHHHCCC----HHHHHHHHHH--HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 887777654 999999999999999864 6899999996 467889999999999999999999999999999876
Q ss_pred C-eEEEEeccCCCC------------CCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 011838 397 C-KINLISFNPHCG------------SQFTPTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 397 ~-~VnLIp~nP~~~------------~~~~~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
. .++|+||+|.+. ...++++.+.++++++++++.|+++++
T Consensus 159 ~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 159 IKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 4 799999999532 235678899999999999999999876
No 28
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.91 E-value=7.1e-23 Score=213.14 Aligned_cols=245 Identities=19% Similarity=0.311 Sum_probs=176.6
Q ss_pred CeeEEEEeccCCCc--eEEEEEecCCCCCCCCCCCCCCCC----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC
Q 011838 200 LVIETVVIPCNRGR--TTVCVSSQVGCAMNCQFCYTGRMG----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 273 (476)
Q Consensus 200 ~~IEsVlip~~~~r--~tlCVSsq~GCnl~C~FC~tg~~g----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm 273 (476)
+.|++.+... .|| ..++++.|.+||++|.||+.+... ....++.+|+.+.+..+.+ .++..|.|+|
T Consensus 43 ~~~~~~l~D~-~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~Gv~~I~~tG- 114 (373)
T PLN02951 43 NPVSDMLVDS-FGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA------AGVDKIRLTG- 114 (373)
T ss_pred CCCCcccccC-CCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEEC-
Confidence 3556655532 344 469999999999999999875321 1245899999887765432 3788999999
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 274 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 274 GEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
||||++++ +.++++.+.+..|+. .++++|||+. +.+.+|.+.+...+.||||+.+++.++++++.. .+++
T Consensus 115 GEPllr~d-l~eli~~l~~~~gi~----~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~---~~~~ 186 (373)
T PLN02951 115 GEPTLRKD-IEDICLQLSSLKGLK----TLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRK---GHDR 186 (373)
T ss_pred CCCcchhh-HHHHHHHHHhcCCCc----eEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCC---CHHH
Confidence 99999975 778888664434653 5899999974 567788887755678999999999999998532 4799
Q ss_pred HHHHHHHHHHhhCCC-eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCC----CcHHHHHHHHHH
Q 011838 352 LIETLREELHFKNNY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP----TTDEKMIEFRNI 426 (476)
Q Consensus 352 vleal~~~l~~~~g~-~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~----ps~e~i~~f~~~ 426 (476)
++++++. +.+.|. ++.+++++++|+|| +++.++++++++.+..+.++.|.|.++..+.. +..+.++.+.+.
T Consensus 187 vl~~I~~--a~~~G~~~vkin~vv~~g~N~--~Ei~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 187 VLESIDT--AIELGYNPVKVNCVVMRGFND--DEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred HHHHHHH--HHHcCCCcEEEEEEecCCCCH--HHHHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 9999997 355664 79999999999987 47999999999998889999999987654321 223333333322
Q ss_pred ---HHh-----CCCeEEEc-----------cCCCCccccccccccccCCC--CCCCCCC
Q 011838 427 ---LAG-----AGCTVFLR-----------LSRGDDQMAACGQLGNPGAI--QAPLLRV 464 (476)
Q Consensus 427 ---L~~-----~Gi~v~vR-----------~~~G~di~aaCGqL~~~~~~--~~~~~~~ 464 (476)
+.. .|...+.+ .......|+.|-.++.++++ ++||...
T Consensus 263 ~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~l~~CL~~~ 321 (373)
T PLN02951 263 FPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLKVCLFGP 321 (373)
T ss_pred cCcccccCCCCCCCceEEEECCCCeEEEEEcCCcccccccCCeEEEccCCcEEecCCCC
Confidence 111 12222221 22225689999999999988 7888763
No 29
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.91 E-value=1.3e-23 Score=211.41 Aligned_cols=174 Identities=20% Similarity=0.359 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFL 318 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~ 318 (476)
.++.+++++.+.....++.. ....|+|+| ||||++++.+.++++.+ ++.|+. +++.|||+. +.+.+++
T Consensus 105 ~~t~eel~~~i~~~~~~~~~---~~~~V~~sG-GEPll~~~~l~~l~~~~-k~~g~~-----~~i~TnG~~~~~~~~~ll 174 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRN---SGGGVTLSG-GEPLLQPEFALALLQAC-HERGIH-----TAVETSGFTPWETIEKVL 174 (295)
T ss_pred CCcHHHHHHHHHHHHHhccc---CCCcEEeeC-cchhchHHHHHHHHHHH-HHcCCc-----EeeeCCCCCCHHHHHHHH
Confidence 35778888777654433321 234688999 99999998888999965 566875 999999985 4677777
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--
Q 011838 319 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP-- 396 (476)
Q Consensus 319 ~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~-- 396 (476)
+..+. +.||+|+.+++.|+++++. +++.++++++. +.+.+.++.+++++++|+||+.++++++++++++++
T Consensus 175 ~~~d~-~~isl~~~~~~~~~~~~g~----~~~~vl~~i~~--l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~ 247 (295)
T TIGR02494 175 PYVDL-FLFDIKHLDDERHKEVTGV----DNEPILENLEA--LAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPG 247 (295)
T ss_pred hhCCE-EEEeeccCChHHHHHHhCC----ChHHHHHHHHH--HHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccC
Confidence 66564 4599999999999999875 36889999996 466788999999999999999999999999999886
Q ss_pred -CeEEEEeccCCCCC------------CCCCCcHHHHHHHHHHHHhCC
Q 011838 397 -CKINLISFNPHCGS------------QFTPTTDEKMIEFRNILAGAG 431 (476)
Q Consensus 397 -~~VnLIp~nP~~~~------------~~~~ps~e~i~~f~~~L~~~G 431 (476)
..++++||+|.+.. .++.|+.+++++|++.+++.|
T Consensus 248 v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 248 VDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred CceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 38999999997543 235799999999999998765
No 30
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.90 E-value=2e-22 Score=205.95 Aligned_cols=252 Identities=20% Similarity=0.224 Sum_probs=181.0
Q ss_pred hcCCCHHHHHHHHHH-hccc----cceEeEEEe----cCCCCeEEEE-EecCCCeeEEEEeccCCCceEEEEEecCCCCC
Q 011838 157 LEGLNKDFKKMLSEH-AEFR----ALSLKDILT----SSDGTRKILF-MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 226 (476)
Q Consensus 157 ~~~l~~~~r~~L~~~-~~~~----~~~~~~~~~----s~Dgt~K~l~-~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl 226 (476)
...+++..++.|... |.+. ..+++.+.. ...+..|..| +....+.++ | --+..|||+
T Consensus 4 ~~~~~~~~~~~~~~~~y~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~q---~----------~P~~~~C~~ 70 (322)
T PRK13762 4 RIMIPSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSCYKSKFYGIESHRCVQ---M----------TPVVAWCNQ 70 (322)
T ss_pred ccccCHHHHHHHHhCCCEEeccccceeechhhHHHhcCCCcccccccccccchheec---c----------CchhHHHhc
Confidence 344677888888763 5433 245555542 3345666654 222222221 1 113578999
Q ss_pred CCCCCCCCCCC-------CccCCCHHHHHHHHHHHHH-Hhcc-------------cCCCeEEEEEecCCcccCCHHHHHH
Q 011838 227 NCQFCYTGRMG-------LKRHLTAAEIVEQAVFARR-LLSS-------------EVGSITNVVFMGMGEPLHNVENVIK 285 (476)
Q Consensus 227 ~C~FC~tg~~g-------~~r~lt~~EIveqv~~~~~-~l~~-------------~~~~i~nIvf~GmGEPLLn~d~V~~ 285 (476)
+|.||+++... ..+..+++||++++..... .+.. ....++++.|+|.||||+++ .+.+
T Consensus 71 rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p-~l~e 149 (322)
T PRK13762 71 RCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLYP-YLPE 149 (322)
T ss_pred cCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccchh-hHHH
Confidence 99999986432 2357899999999987632 2210 01236789999889999986 6889
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCchHH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhC
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTSGLVPQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 364 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTNG~~p~-i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~ 364 (476)
+++.+ ++.|+. +.|.|||+.+. +++| ......+.||||+++++.|+++++......++.++++++. +.+.
T Consensus 150 li~~~-k~~Gi~-----~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~--l~~~ 220 (322)
T PRK13762 150 LIEEF-HKRGFT-----TFLVTNGTRPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL--LPSK 220 (322)
T ss_pred HHHHH-HHcCCC-----EEEECCCCCHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH--HHhC
Confidence 99865 567876 99999998764 4555 4444567899999999999999864234578999999996 4667
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC-----CCCcHHHHHHHHHHHHhC-CCe
Q 011838 365 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKMIEFRNILAGA-GCT 433 (476)
Q Consensus 365 g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~-----~~ps~e~i~~f~~~L~~~-Gi~ 433 (476)
+.++++++++++|+||++++ +++++++.+++ .|++.||++.+...+ ..|+.+++.+|.+.+.+. |+.
T Consensus 221 ~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~~ 294 (322)
T PRK13762 221 KTRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGYE 294 (322)
T ss_pred CCCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCCe
Confidence 88999999999999998655 89999988764 899999998865433 358899999999999886 554
No 31
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.90 E-value=4e-22 Score=201.51 Aligned_cols=230 Identities=17% Similarity=0.287 Sum_probs=171.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCC-CCCc---cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGR-MGLK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~-~g~~---r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
..+-+|.+..||++|.||+... ..+. ..|+++||...+..+.+ .|+..|-++| ||||+..| +.++++.
T Consensus 11 ~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~------~Gv~kvRlTG-GEPllR~d-l~eIi~~ 82 (322)
T COG2896 11 RYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE------LGVEKVRLTG-GEPLLRKD-LDEIIAR 82 (322)
T ss_pred ceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH------cCcceEEEeC-CCchhhcC-HHHHHHH
Confidence 5678999999999999999754 4433 26899999988877654 3789999999 99999964 7788887
Q ss_pred HHHhcCCCCCCCeEEEEeCCch-H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLV-P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY- 366 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~-p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~- 366 (476)
+++. ++ ..++++|||+. + ..++|.+.+--.+.||||+.+++.+.+|++.+ .+++++++++. +...|.
T Consensus 83 l~~~-~~----~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~---~~~~Vl~GI~~--A~~~Gl~ 152 (322)
T COG2896 83 LARL-GI----RDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRD---RLDRVLEGIDA--AVEAGLT 152 (322)
T ss_pred Hhhc-cc----ceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCC---cHHHHHHHHHH--HHHcCCC
Confidence 7654 55 47999999984 4 56777777766678999999999999999654 38999999997 466775
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCC---CC-CCcHHHHH-HHHHH--H---H--hCCC--
Q 011838 367 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ---FT-PTTDEKMI-EFRNI--L---A--GAGC-- 432 (476)
Q Consensus 367 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~---~~-~ps~e~i~-~f~~~--L---~--~~Gi-- 432 (476)
+|.++.|+++|+||. ++..+++|+++.+..+.+|-|.|..... +. --+.+++. .+.+. + + ..+-
T Consensus 153 pVKlN~Vv~kgvNd~--ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~ 230 (322)
T COG2896 153 PVKLNTVLMKGVNDD--EIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAK 230 (322)
T ss_pred ceEEEEEEecCCCHH--HHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCce
Confidence 699999999999975 7999999999999888888888876321 11 11222222 22211 1 0 1111
Q ss_pred --------eEEEccCCCCccccccccccccCCC--CCCCCC
Q 011838 433 --------TVFLRLSRGDDQMAACGQLGNPGAI--QAPLLR 463 (476)
Q Consensus 433 --------~v~vR~~~G~di~aaCGqL~~~~~~--~~~~~~ 463 (476)
.+.+-.+...+.|+.|-.++.+.++ ++||++
T Consensus 231 ~~~~~~~~~ig~I~p~~~~FC~~CnR~Rlt~dGkl~~CL~~ 271 (322)
T COG2896 231 YFIHPDGGEIGFIAPVSNPFCATCNRLRLTADGKLKPCLFR 271 (322)
T ss_pred EEEeCCCcEEEEEcCCCchhhhhcceeeeccCCeEEeccCC
Confidence 2333344556789999999999888 677766
No 32
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.89 E-value=7.2e-22 Score=199.38 Aligned_cols=231 Identities=20% Similarity=0.269 Sum_probs=165.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRMGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
.++.++.+.+||++|.||+.+.... .+.++.+|+...+..+.+ .++..|.|+| ||||++.+ +.++++.+.
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~------~gi~~I~~tG-GEPll~~~-l~~iv~~l~ 81 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE------FGVRKVKITG-GEPLLRKD-LIEIIRRIK 81 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH------cCCCEEEEEC-cccccccC-HHHHHHHHH
Confidence 3677888999999999999865332 356899998776654432 3688899999 99999975 678888664
Q ss_pred HhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-E
Q 011838 292 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-V 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V 368 (476)
..|+. .++++|||+. +.+.++.+.+...+.||||+.+++.++++++ +..+++++++++. ..+.|.. +
T Consensus 82 -~~g~~----~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~--~~~~G~~~v 151 (302)
T TIGR02668 82 -DYGIK----DVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIES--AVDAGLTPV 151 (302)
T ss_pred -hCCCc----eEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHH--HHHcCCCcE
Confidence 45662 5999999974 3456666666557789999999999998876 3469999999997 3566764 9
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHhC----------CCe----
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QFTPTTDEKMIEFRNILAGA----------GCT---- 433 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-~~~~ps~e~i~~f~~~L~~~----------Gi~---- 433 (476)
.+++++++|.|+ +++.++++++++.+..++++++.|.... .+..........+.+.+++. |-.
T Consensus 152 ~i~~v~~~g~n~--~ei~~~~~~~~~~g~~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 229 (302)
T TIGR02668 152 KLNMVVLKGIND--NEIPDMVEFAAEGGAILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFI 229 (302)
T ss_pred EEEEEEeCCCCH--HHHHHHHHHHHhcCCEEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEe
Confidence 999999999875 5799999999999999999999887532 11111111222333333321 111
Q ss_pred -----EEEccCCCC-ccccccccccccCCC--CCCCCCC
Q 011838 434 -----VFLRLSRGD-DQMAACGQLGNPGAI--QAPLLRV 464 (476)
Q Consensus 434 -----v~vR~~~G~-di~aaCGqL~~~~~~--~~~~~~~ 464 (476)
+-+-.+... ..|+.|..++.++++ .||++..
T Consensus 230 ~~~~~~g~i~~~~~~~fC~~c~r~r~t~dG~l~~Cl~~~ 268 (302)
T TIGR02668 230 PGGVEVEVVKPMDNPVFCAHCTRLRLTSDGKLKTCLLRD 268 (302)
T ss_pred CCCeEEEEECccCCCCccccCCeEEEcCCCCEEECCCCC
Confidence 111122334 488999999999888 7888775
No 33
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.89 E-value=2.2e-21 Score=198.64 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=166.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
.+-++.+.+||++|.||+..... ....++.+|+...+..+.+ .++..|.|+| ||||++.+ +.++++.+.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~------~Gv~~I~~tG-GEPllr~d-l~~li~~i~ 86 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE------LGVRKIRLTG-GEPLVRRG-CDQLVARLG 86 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH------CCCCEEEEEC-cCCCcccc-HHHHHHHHH
Confidence 34566799999999999975432 2346999998887765533 3788999999 99999964 778888765
Q ss_pred HhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-eE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~-~V 368 (476)
+..++ ..+++.|||+. +.+.+|.+.+...+.||||+.+++.++++++. ..+++++++++. +.+.|. ++
T Consensus 87 ~~~~l----~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~---g~~~~vl~~i~~--~~~~Gi~~v 157 (329)
T PRK13361 87 KLPGL----EELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRN---GRLERVIAGIDA--AKAAGFERI 157 (329)
T ss_pred hCCCC----ceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCC---CCHHHHHHHHHH--HHHcCCCce
Confidence 44344 25899999974 45567777765567899999999999998863 468999999996 466777 89
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-CC---CCCcHHHHH-HHHHHHH------h-CCCeEE-
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QF---TPTTDEKMI-EFRNILA------G-AGCTVF- 435 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-~~---~~ps~e~i~-~f~~~L~------~-~Gi~v~- 435 (476)
.+++|+++|.|+ +++.++++++++++..+.++.|.|.+.. .+ ...+.+++. .+.+... . .|-..+
T Consensus 158 ~in~v~~~g~N~--~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 158 KLNAVILRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEEECCCCH--HHHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 999999999885 6899999999999988888888887542 21 223444443 3333210 0 121111
Q ss_pred ----------EccCCCCccccccccccccCCC--CCCCCC
Q 011838 436 ----------LRLSRGDDQMAACGQLGNPGAI--QAPLLR 463 (476)
Q Consensus 436 ----------vR~~~G~di~aaCGqL~~~~~~--~~~~~~ 463 (476)
+..+.....|+.|..++.++++ ++||..
T Consensus 236 ~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~G~l~~Cl~~ 275 (329)
T PRK13361 236 TMADSPIHIGFISPHSHNFCHECNRVRVTAEGQLLLCLGN 275 (329)
T ss_pred EECCCCeEEEEEcCCCccccccCCeEEEccCCcEEecCCC
Confidence 1233446789999999999887 777765
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.88 E-value=3.1e-21 Score=197.64 Aligned_cols=232 Identities=19% Similarity=0.268 Sum_probs=166.6
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC-----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g-----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
.+-++.+.+||++|.||+....+ ..+.++.+|+.+.+..+.+ .++..|.|+| ||||++.+ +.++++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~gv~~V~ltG-GEPll~~~-l~~li~~ 82 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG------LGVRKVRLTG-GEPLLRKD-LVELVAR 82 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH------CCCCEEEEEC-ccccccCC-HHHHHHH
Confidence 44566789999999999986521 2356899998887765543 3688999999 99999965 6788887
Q ss_pred HHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 367 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~ 367 (476)
+.+..|+. .++++|||+. +.+++|.+.+...+.||+|+.+++.++++++. ..++++++++++. +.+.|..
T Consensus 83 i~~~~gi~----~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i~~--l~~~G~~ 154 (334)
T TIGR02666 83 LAALPGIE----DIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGIDA--ALAAGLE 154 (334)
T ss_pred HHhcCCCC----eEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC--CCCHHHHHHHHHH--HHHcCCC
Confidence 65545662 5999999984 45667777765567899999999999988742 3468999999997 4667775
Q ss_pred -EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-CCC----CCcHHHHHHHHHHH---Hh------CCC
Q 011838 368 -VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QFT----PTTDEKMIEFRNIL---AG------AGC 432 (476)
Q Consensus 368 -V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-~~~----~ps~e~i~~f~~~L---~~------~Gi 432 (476)
+.+++++++|.|+ +++.++++++++++..+.++.|.|..+. .+. .+..+.++.+.+.. .. .|-
T Consensus 155 ~v~in~vv~~g~n~--~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~ 232 (334)
T TIGR02666 155 PVKLNTVVMRGVND--DEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGP 232 (334)
T ss_pred cEEEEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCC
Confidence 9999999999886 5799999999999988999998887543 221 12233333333322 10 111
Q ss_pred -eEEE---c---------cCCCCccccccccccccCCC--CCCCCCC
Q 011838 433 -TVFL---R---------LSRGDDQMAACGQLGNPGAI--QAPLLRV 464 (476)
Q Consensus 433 -~v~v---R---------~~~G~di~aaCGqL~~~~~~--~~~~~~~ 464 (476)
..+. . .......|+.|..++.++++ .+|+..+
T Consensus 233 ~~~~~~~~~~~~~~ig~i~~~s~~fC~~cnr~r~t~dG~l~~Cl~~~ 279 (334)
T TIGR02666 233 APAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLTADGKLRLCLFAD 279 (334)
T ss_pred ceeeeeecCCCCeEEEEEccCCcccccccCEEEEccCCCEEEccCCC
Confidence 1221 1 11224689999999998877 7777663
No 35
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.85 E-value=1.1e-19 Score=171.42 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=125.0
Q ss_pred cCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCC
Q 011838 221 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~ 297 (476)
+.|||++|.||+.+... ....++++++++.+.... ..+..|.|+| ||||++++ +.++++.+. +.|+.
T Consensus 23 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-------~~~~~i~~sG-GEPll~~~-l~~li~~~~-~~g~~ 92 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-------GLIDGVVITG-GEPTLQAG-LPDFLRKVR-ELGFE 92 (191)
T ss_pred cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-------CCCCeEEEEC-CcccCcHh-HHHHHHHHH-HCCCe
Confidence 78999999999997432 134689999999887531 2367889999 99999987 888888664 56764
Q ss_pred CCCCeEEEEeCCchH-HHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEe
Q 011838 298 FSPRKVTVSTSGLVP-QLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 375 (476)
Q Consensus 298 i~~r~ItVsTNG~~p-~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI 375 (476)
+.+.|||+.+ .+.++++.+ ...+.+|++++ ++.+..+++..+.+. ++++++++. +.+.+.++.++++++
T Consensus 93 -----v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~~~~~-~~~~~~i~~--l~~~gi~~~i~~~v~ 163 (191)
T TIGR02495 93 -----VKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLEKNGS-NNILKSLEI--LLRSGIPFELRTTVH 163 (191)
T ss_pred -----EEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCCCchH-HHHHHHHHH--HHHcCCCEEEEEEEe
Confidence 9999999865 466777765 24578999996 567777876543321 489999986 467888999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 376 AGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 376 ~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
+|.|+ .+++++++++++..+ .+.+.|
T Consensus 164 ~~~~~-~~ei~~~~~~l~~~~-~~~~~~ 189 (191)
T TIGR02495 164 RGFLD-EEDLAEIATRIKENG-TYVLQP 189 (191)
T ss_pred CCCCC-HHHHHHHHHHhccCC-cEEeec
Confidence 99998 789999999999887 444444
No 36
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.84 E-value=1.8e-19 Score=180.20 Aligned_cols=205 Identities=20% Similarity=0.323 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCCCCCC-----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g-----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl 296 (476)
.-|+++|.||+.|... .......++|.+++.....+.+..+..+++|.|+|-|||+|++ ++-++|+.+ ++.|.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~-~L~elI~~~-k~~g~ 109 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYP-NLGELIEEI-KKRGK 109 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccccc-CHHHHHHHH-HhcCC
Confidence 3799999999997543 2235677888888877655432112479999999999999985 577777755 55662
Q ss_pred CCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeC
Q 011838 297 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 376 (476)
Q Consensus 297 ~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~ 376 (476)
..+.|.|||+.|.+.+-+...+ .|.+||||++++++++|.....+-.+++++++++. +......+.++++++++
T Consensus 110 ----~~tflvTNgslpdv~~~L~~~d-ql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~-~~~~~~~~~vir~tlvk 183 (296)
T COG0731 110 ----KTTFLVTNGSLPDVLEELKLPD-QLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI-FRSEYKGRTVIRTTLVK 183 (296)
T ss_pred ----ceEEEEeCCChHHHHHHhccCC-EEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH-hhhcCCCcEEEEEEEec
Confidence 1499999999987766555443 46799999999999999755455679999999997 44332678999999999
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCeEEEEeccCCCCCCCC-----CCcHHHHHHHHHHHHhC-CCeE
Q 011838 377 GVNDSFDDAKRLIGLVQGI-PCKINLISFNPHCGSQFT-----PTTDEKMIEFRNILAGA-GCTV 434 (476)
Q Consensus 377 GvNDs~ed~~~La~ll~~l-~~~VnLIp~nP~~~~~~~-----~ps~e~i~~f~~~L~~~-Gi~v 434 (476)
|+||+.+++++++++++.. +..|.+..|.-.+...+. .|..+++..|.+.|.+. |+.+
T Consensus 184 g~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 184 GINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred cccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 9999999999999999977 458888776544444443 67788999999999876 5443
No 37
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.80 E-value=1.4e-17 Score=173.43 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=143.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM--GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~--g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
..+.+..+.+||++|.||+.... ...+.++.+++.+.+..+.+ .++..|.|+| ||||++++ +.++++.+
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~------~g~~~v~~~G-GEPll~~~-~~~il~~~- 86 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA------LGALQLHFSG-GEPLLRKD-LEELVAHA- 86 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH------cCCcEEEEEC-CccCCchh-HHHHHHHH-
Confidence 56777779999999999997532 23457899888777766533 2577899999 99999976 77888865
Q ss_pred HhcCCCCCCCeEEEEeCCch--H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV--P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~--p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
++.|+. +.+.|||+. + .+++|.+.+...+.||||+.+++.++++++.. .++++++++++. +.+.+.++
T Consensus 87 ~~~g~~-----~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~--g~f~~~~~~i~~--l~~~g~~v 157 (378)
T PRK05301 87 RELGLY-----TNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTK--GAFAKKLAVARL--VKAHGYPL 157 (378)
T ss_pred HHcCCc-----EEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCC--chHHHHHHHHHH--HHHCCCce
Confidence 456775 899999973 3 55666666544678999999999999988653 368999999986 57788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCC----CCCCCCcHHHHHHHHHHH
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG----SQFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~----~~~~~ps~e~i~~f~~~L 427 (476)
.+.+++.+ .+.+++.++++++.++++ .+.+.++.+... .....++.++++++.+.+
T Consensus 158 ~i~~vv~~---~N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 158 TLNAVIHR---HNIDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred EEEEEeec---CCHHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 99988765 356789999999998886 566665544421 112346667776655443
No 38
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.79 E-value=1.9e-17 Score=169.11 Aligned_cols=232 Identities=17% Similarity=0.227 Sum_probs=157.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
++.+..+.+||++|.||...... ..+.++.+++++.+.. .++..|.|+| ||||++++ +.++++.+
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e---------~g~~~V~i~G-GEPLL~pd-l~eiv~~~- 96 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE---------CGAPVVSIPG-GEPLLHPE-IDEIVRGL- 96 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH---------cCCCEEEEeC-cccccccc-HHHHHHHH-
Confidence 45556689999999999976432 2356899988876643 2466799999 99999976 78888865
Q ss_pred HhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
+..|+ ++.+.|||++ +.+.++.+.+...+.||||+.. +.|++++. ++..++.++++++. +.+.|.++.
T Consensus 97 ~~~g~-----~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~-e~hd~~~~--~~g~f~~~l~~I~~--l~~~G~~v~ 166 (318)
T TIGR03470 97 VARKK-----FVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVC--REGVFDRAVEAIRE--AKARGFRVT 166 (318)
T ss_pred HHcCC-----eEEEecCceehHHHHHHHHhCCCcEEEEEEecCc-hhhchhhc--CCCcHHHHHHHHHH--HHHCCCcEE
Confidence 45565 4999999984 4667777766567889999975 67777653 34579999999997 467888999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC---CCCCCcHHHH-HHHHHHHH---hCCCeE-----EE
Q 011838 370 FEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---QFTPTTDEKM-IEFRNILA---GAGCTV-----FL 436 (476)
Q Consensus 370 ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~---~~~~ps~e~i-~~f~~~L~---~~Gi~v-----~v 436 (476)
+.++++.+ ++.+++.++++++.++++ .+.+.|..|.... ... .+.++. +.|.+.++ +.++.. ++
T Consensus 167 v~~tv~~~--~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~-l~~~e~~~~~~~~~~~~~~~~~~~~~s~~~l 243 (318)
T TIGR03470 167 TNTTLFND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHF-LGRRQTKKLFREVLSNGNGKRWRFNHSPLFL 243 (318)
T ss_pred EEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccc-cCHHHHHHHHHHHHhhccCCCCcccCCHHHH
Confidence 99988876 457899999999999987 7888886654321 111 233443 33444443 222221 11
Q ss_pred ccCCCCccccccc---cccc--cCCCCCCCCC---ChhhHHHHh
Q 011838 437 RLSRGDDQMAACG---QLGN--PGAIQAPLLR---VPEKFQTAI 472 (476)
Q Consensus 437 R~~~G~di~aaCG---qL~~--~~~~~~~~~~---~~~~~~~~~ 472 (476)
.--.|. ..-.|| .... .+..+||.|. ...+|+.-+
T Consensus 244 ~~l~g~-~~~~C~~~~~~~~~~~G~~~pC~~~~~~~~~~~~~~~ 286 (318)
T TIGR03470 244 DFLAGN-QQYECTPWGNPTRNVFGWQKPCYLLNDGYVPTFRELM 286 (318)
T ss_pred HHHcCC-CCccccCCCCcccCccccccCceecCCcchhhHHHHH
Confidence 101232 234564 4433 3566999888 367777443
No 39
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.78 E-value=2e-17 Score=173.36 Aligned_cols=180 Identities=16% Similarity=0.138 Sum_probs=137.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEE-eCCc---h-HH
Q 011838 239 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS-TSGL---V-PQ 313 (476)
Q Consensus 239 ~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVs-TNG~---~-p~ 313 (476)
++.++++|+++++.....++.. ....|.|+|.|||+.+ +++.++++.+ ++.|++ +.+. |||. . +.
T Consensus 51 g~~~t~~evl~ev~~d~~~~~~---~~ggVtisGGGepl~~-~~l~eLl~~l-k~~gi~-----taI~~TnG~~l~~~e~ 120 (404)
T TIGR03278 51 GDFIPPQVVLGEVQTSLGFRTG---RDTKVTISGGGDVSCY-PELEELTKGL-SDLGLP-----IHLGYTSGKGFDDPEI 120 (404)
T ss_pred CCcCCHHHHHHHHHHHHHHhcC---CCCEEEEECCcccccC-HHHHHHHHHH-HhCCCC-----EEEeCCCCcccCCHHH
Confidence 3578999999999988776532 2346779995666666 6789999965 566875 8886 9974 2 45
Q ss_pred HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 011838 314 LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 393 (476)
Q Consensus 314 i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~ 393 (476)
+.++++.+...+.+|+|+.+++.|+++++..+ .+.+++++++ +. + +..+.++.+++||+||+++. .++++++.
T Consensus 121 ~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~---a~~ILe~L~~-L~-e-~~~v~~~ivlIPGiND~eel-~~ti~~L~ 193 (404)
T TIGR03278 121 AEFLIDNGVREVSFTVFATDPELRREWMKDPT---PEASLQCLRR-FC-E-SCEVHAASVIIPGVNDGDVL-WKTCADLE 193 (404)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHhCCCC---HHHHHHHHHH-HH-h-cCCEEEEEEEeCCccCcHHH-HHHHHHHH
Confidence 78888875334569999999999999998542 3899999997 44 4 46899999999999998654 59999999
Q ss_pred cCCC-eEEEEeccCCCCC-----------CCCCCcHHHHHHH-HHHHHhCCCeEE
Q 011838 394 GIPC-KINLISFNPHCGS-----------QFTPTTDEKMIEF-RNILAGAGCTVF 435 (476)
Q Consensus 394 ~l~~-~VnLIp~nP~~~~-----------~~~~ps~e~i~~f-~~~L~~~Gi~v~ 435 (476)
+++. .|.|.||++.... .+.+++.+++.++ +++.++.|++++
T Consensus 194 ~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~ 248 (404)
T TIGR03278 194 SWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVT 248 (404)
T ss_pred HCCCCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 9875 7999999854311 2567788888777 677777886653
No 40
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.78 E-value=3.1e-17 Score=169.47 Aligned_cols=192 Identities=17% Similarity=0.232 Sum_probs=139.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM--GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~--g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
..+.+..+.+||++|.||+.+.. .....|+.+++.+.+.++.+ .++..|.|+| ||||++++ +.++++.+
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~------~g~~~v~~~G-GEPll~~~-~~~ii~~~- 77 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE------LGVLQLHFSG-GEPLARPD-LVELVAHA- 77 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh------cCCcEEEEeC-cccccccc-HHHHHHHH-
Confidence 45677779999999999997532 12356898887776665433 2577899999 99999975 77888865
Q ss_pred HhcCCCCCCCeEEEEeCCch--H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV--P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~--p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
++.|+. +.+.|||+. + .+++|.+.+...+.||||+.+++.++++++. +..++.++++++. +.+.+.++
T Consensus 78 ~~~g~~-----~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i~~--l~~~g~~v 148 (358)
T TIGR02109 78 RRLGLY-----TNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMARA--VKAAGLPL 148 (358)
T ss_pred HHcCCe-----EEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHHHH--HHhCCCce
Confidence 456764 899999973 4 4566666654467899999999999998764 3368999999996 46788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC----CCCCCcHHHHHHHHHH
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIEFRNI 426 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~ 426 (476)
.+.+++.+ ++.+++.++++++.++++ .+.+.+..+.+.. ....|+.++++++.+.
T Consensus 149 ~v~~vv~~---~N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 208 (358)
T TIGR02109 149 TLNFVIHR---HNIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRI 208 (358)
T ss_pred EEEEEecc---CCHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHH
Confidence 99988765 357789999999998875 4555443332211 1234666666655444
No 41
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=164.39 Aligned_cols=172 Identities=20% Similarity=0.356 Sum_probs=139.7
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCCCCcc------CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHH
Q 011838 211 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR------HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVI 284 (476)
Q Consensus 211 ~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r------~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~ 284 (476)
.|++.+-|--..|||++|.||.-....+.| ..+++.+++.+..+.++- +.++ ...+-|+|||++++ ++.
T Consensus 104 RGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~K---gkgl-EaHlDGqGEP~lYP-~l~ 178 (414)
T COG2100 104 RGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFK---GKGL-EAHLDGQGEPLLYP-HLV 178 (414)
T ss_pred cCceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhh---CCCe-EEEecCCCCCccch-hHH
Confidence 577777777789999999999975543332 357888888888776543 3455 47789999999986 678
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011838 285 KAANIMVHEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 361 (476)
Q Consensus 285 ~ai~~l~~~~Gl~i~~r~ItVsTNG~~---p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~ 361 (476)
++++.++.-.|.. .++++|||+. +.+++|.+.+...+.+|+||.|+++-+.+++. +.|+++.+++.++. .
T Consensus 179 ~lVqalk~~~~v~----vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~aE~--i 251 (414)
T COG2100 179 DLVQALKEHKGVE----VVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVAEY--I 251 (414)
T ss_pred HHHHHHhcCCCce----EEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHHHHH--H
Confidence 8888776667776 5999999974 46788888886677899999999999999886 58999999999995 4
Q ss_pred hhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 011838 362 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 396 (476)
Q Consensus 362 ~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~ 396 (476)
.+++..+.+.-+++||+||. ++.++++|+.+++
T Consensus 252 ~~a~idvlIaPv~lPG~ND~--E~~~iIe~A~~iG 284 (414)
T COG2100 252 ANAGIDVLIAPVWLPGVNDD--EMPKIIEWAREIG 284 (414)
T ss_pred HhCCCCEEEeeeecCCcChH--HHHHHHHHHHHhC
Confidence 66999999999999999985 7999999998775
No 42
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.77 E-value=4.3e-17 Score=166.72 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=148.3
Q ss_pred CCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCC-C--CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc
Q 011838 199 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE 275 (476)
Q Consensus 199 G~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~-g--~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE 275 (476)
+..++.++.+| ++|..+.+ +.+||++|.||+.... + ....++.+++.+.+..+.. ..++..|+|+| ||
T Consensus 76 ~~~~~gl~hky-p~rvll~v--T~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~-----~~~I~~VilSG-GD 146 (321)
T TIGR03822 76 HSPVPGIVHRY-PDRVLLKP--VHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIAD-----HPEIWEVILTG-GD 146 (321)
T ss_pred CCCCCCcccCC-CCEEEEEe--cCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHh-----CCCccEEEEeC-CC
Confidence 45677777777 56555554 8999999999998653 2 1234566666655554332 14688999999 99
Q ss_pred ccCC-HHHHHHHHHHHHHhcCCCCCCCeEEEEeCC-----c--hHHHHHHH-hcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011838 276 PLHN-VENVIKAANIMVHEQGLHFSPRKVTVSTSG-----L--VPQLKQFL-NESNCALAVSLNATTDEVRNWIMPINRK 346 (476)
Q Consensus 276 PLLn-~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG-----~--~p~i~~L~-~~~~~~LaISLda~~de~r~~I~p~~~~ 346 (476)
||+. .+.+.++++.+.+...+ ..+.+.|++ . .+++.+.+ +.+ ..+.|++|+.++.. +
T Consensus 147 Pl~~~~~~L~~ll~~l~~i~~v----~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~v~i~l~~~h~~e---l------ 212 (321)
T TIGR03822 147 PLVLSPRRLGDIMARLAAIDHV----KIVRFHTRVPVADPARVTPALIAALKTSG-KTVYVALHANHARE---L------ 212 (321)
T ss_pred cccCCHHHHHHHHHHHHhCCCc----cEEEEeCCCcccChhhcCHHHHHHHHHcC-CcEEEEecCCChhh---c------
Confidence 9985 35677778776532122 246777744 2 34544444 444 44568888875421 2
Q ss_pred CcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCCCCCcHHHHHHHHH
Q 011838 347 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRN 425 (476)
Q Consensus 347 ~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~~~ps~e~i~~f~~ 425 (476)
.++++++++. +.+.|..+.++.++++|+||+.+++.+|.+++..+++ .+.+..+.|.++......+.++..++.+
T Consensus 213 --~~~~~~ai~~--L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 213 --TAEARAACAR--LIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVR 288 (321)
T ss_pred --CHHHHHHHHH--HHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHH
Confidence 2688999996 5788999999999999999999999999999998886 5667778888776544566666666666
Q ss_pred HHHhC--C--CeEEEccCCC
Q 011838 426 ILAGA--G--CTVFLRLSRG 441 (476)
Q Consensus 426 ~L~~~--G--i~v~vR~~~G 441 (476)
.+++. | ++..++...|
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHhCCCCcceeEEEeCCC
Confidence 66542 4 4556655444
No 43
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.75 E-value=8e-17 Score=150.25 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=138.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC-CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHH-HHHHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMG-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-NVIKAANIMVH 292 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g-~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d-~V~~ai~~l~~ 292 (476)
++++..+.|||++|.||+.+... ..+..+++++.+++..+.+..... ..+..+.|.| |||+++.+ .+.++++.+.+
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~-~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~ 79 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKE-ILVGTVFIGG-GTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCC-cceeEEEECC-CCCCCCCHHHHHHHHHHHHH
Confidence 35666789999999999986532 145677888888887764321111 1367788888 99999875 37777776655
Q ss_pred hcCCCCCCCeEEEEeCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 293 EQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 293 ~~Gl~i~~r~ItVsTNG~~---p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
..+.+ ....+.+.|||.. ..+++|.+.+...+.+|+++.+++.++++.+ ..++++++++++. ..+.|. +.
T Consensus 80 ~~~~~-~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~---~~~~~~~~~~i~~--~~~~g~-~~ 152 (216)
T smart00729 80 ILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR---GHTVEDVLEAVEK--LREAGP-IK 152 (216)
T ss_pred hCCCC-CCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC---CCCHHHHHHHHHH--HHHhCC-cc
Confidence 44321 1245899999752 4567777776447889999999999988654 3568999999997 456664 56
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 370 FEYVMLAGVN-DSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 370 ieyvLI~GvN-Ds~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+.+.++.|++ ++.+++.++++++.+.++ .|.+.+|.|.+++.
T Consensus 153 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~ 196 (216)
T smart00729 153 VSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTP 196 (216)
T ss_pred eEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCCh
Confidence 6777788876 889999999999998887 59999999988764
No 44
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.71 E-value=5.3e-16 Score=159.34 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=135.9
Q ss_pred CCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCC-HHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc
Q 011838 199 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLT-AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL 277 (476)
Q Consensus 199 G~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt-~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL 277 (476)
...++.++.+| ++|.. +..+.|||++|+||+........... .+++.+.+..+. . ..++.+|+|+| ||||
T Consensus 101 ~~~~~gl~hky-~~rvl--l~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~----~-~~~i~eV~lsG-GDPL 171 (331)
T TIGR00238 101 TSPVPGLTHRY-VNRAL--FLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIA----E-HPEIIEILISG-GDPL 171 (331)
T ss_pred CCcCCCceeec-CCcEE--EEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHH----h-CCCcCEEEEEC-Cccc
Confidence 44677777777 45544 44589999999999986533222222 344443333322 1 24789999999 9999
Q ss_pred CCHH-HHHHHHHHHHHhcCCCCCCCeEEEEeCCc-----hHHHHHHHhc-C-CeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011838 278 HNVE-NVIKAANIMVHEQGLHFSPRKVTVSTSGL-----VPQLKQFLNE-S-NCALAVSLNATTDEVRNWIMPINRKYKL 349 (476)
Q Consensus 278 Ln~d-~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~-----~p~i~~L~~~-~-~~~LaISLda~~de~r~~I~p~~~~~~l 349 (476)
+..+ .+.++++.+.+-.++. .-++...|+|+ .+++.+++.. + ... .++.....+|..
T Consensus 172 l~~d~~L~~ll~~L~~i~~~~--~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~-~vsh~nh~~Ei~------------ 236 (331)
T TIGR00238 172 MAKDHELEWLLKRLEEIPHLV--RLRIGTRLPVVIPQRITDELCELLASFELQLM-LVTHINHCNEIT------------ 236 (331)
T ss_pred cCCHHHHHHHHHHHHhcCCcc--EEEeecCCCccCchhcCHHHHHHHHhcCCcEE-EEccCCChHhCC------------
Confidence 9865 3666676664322221 11344445554 3556566655 3 333 344332223321
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 011838 350 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILA 428 (476)
Q Consensus 350 e~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~ 428 (476)
+++.++++. +.+.|..+.+++|+++|+||+.+++.+|.+.+..+++ .+.+..+.|..+......+.++..++.+.++
T Consensus 237 ~~~~~ai~~--L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~~~~~~~i~~~l~ 314 (331)
T TIGR00238 237 EEFAEAMKK--LRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVPDAEAAQIVKELA 314 (331)
T ss_pred HHHHHHHHH--HHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCCHHHHHHHHHHHH
Confidence 567888886 4788999999999999999999999999999988775 4556666777665433444555555555554
Q ss_pred h----CCCeEEEccCCC
Q 011838 429 G----AGCTVFLRLSRG 441 (476)
Q Consensus 429 ~----~Gi~v~vR~~~G 441 (476)
+ ..++.+++...|
T Consensus 315 ~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 315 RLTSGYLVPKFAVEIMG 331 (331)
T ss_pred hcCCCCcceeEEecCCC
Confidence 4 345567765443
No 45
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.71 E-value=1.6e-15 Score=157.37 Aligned_cols=194 Identities=14% Similarity=0.204 Sum_probs=125.5
Q ss_pred cCCCCCCCCCCCCCCCCCc------cCCCHHHHHHHHH-HHHHHhcccCCCeEEEEEecCCcccCCH-HHHHHHHHHHHH
Q 011838 221 QVGCAMNCQFCYTGRMGLK------RHLTAAEIVEQAV-FARRLLSSEVGSITNVVFMGMGEPLHNV-ENVIKAANIMVH 292 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~------r~lt~~EIveqv~-~~~~~l~~~~~~i~nIvf~GmGEPLLn~-d~V~~ai~~l~~ 292 (476)
+.+||++|.||+.+..... ..++. |.++.+. .+.+.. .+..+|+|+| ||||+++ +.+.++++.+ +
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~-~~~~~~i~~~~~~~----~~~~~i~~~G-GEPll~~~~~~~~~~~~~-~ 84 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRD-EVLESMVKRVLNEA----EGHCSFAFQG-GEPTLAGLEFFEELMELQ-R 84 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCH-HHHHHHHHHHHhcc----CCceEEEEEC-CccccCChHHHHHHHHHH-H
Confidence 5899999999998753211 12454 4444443 232221 2456899999 9999994 5566777754 4
Q ss_pred hcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC-CCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 293 EQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPI-NRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 293 ~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~-~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
+.|+.--...+++.|||+. +++.+.+.+..+.+.||||++ ++.++.+++. +++.+++.++++++. +.+.+.++.
T Consensus 85 ~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~--l~~~~~~~~ 161 (370)
T PRK13758 85 KHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAEL--FKKYKVEFN 161 (370)
T ss_pred HhccCCCeEEEEEEecCEecCHHHHHHHHHcCceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHH--HHHhCCCce
Confidence 4443100013689999974 666665555545789999998 5788887754 245689999999997 356677888
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEe-ccCCCCC---CCCCCcHHHHHHHHHHH
Q 011838 370 FEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLIS-FNPHCGS---QFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 370 ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp-~nP~~~~---~~~~ps~e~i~~f~~~L 427 (476)
+.+++.+. +.+++.++++++.+++. .+.+++ +.|.... .-...+++++.+|.+.+
T Consensus 162 i~~~v~~~---n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l 221 (370)
T PRK13758 162 ILCVVTSN---TARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNL 221 (370)
T ss_pred EEEEeccc---cccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHH
Confidence 88888773 35678889999988875 455555 4554321 11124455555554443
No 46
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.69 E-value=2.9e-15 Score=147.16 Aligned_cols=152 Identities=17% Similarity=0.287 Sum_probs=108.7
Q ss_pred ceEeEEEe-cCCCCeEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCC---CC---ccCCCHHHHHH
Q 011838 177 LSLKDILT-SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM---GL---KRHLTAAEIVE 249 (476)
Q Consensus 177 ~~~~~~~~-s~Dgt~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~---g~---~r~lt~~EIve 249 (476)
+.+.+++. |.+|..++. +..+|+++ +.|||++|.||++... +. .+.++.+|+++
T Consensus 3 ~~v~EiF~~SiQGEG~~~-------G~~~~FvR------------~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~ 63 (238)
T TIGR03365 3 IPVLEIFGPTIQGEGMVI-------GQKTMFVR------------TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQ 63 (238)
T ss_pred cceeeeecCccccCcccc-------CCeEEEEE------------eCCcCCcCcCCCCccccCcccCCccccCCHHHHHH
Confidence 35778886 888876654 46778886 6899999999998652 11 12489999999
Q ss_pred HHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEee
Q 011838 250 QAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 329 (476)
Q Consensus 250 qv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISL 329 (476)
.+.... ..++..|+|+| ||||++. .+.++++.+ ++.|+. +.|.|||+.+. ++++..+ .+++|+
T Consensus 64 ~i~~~~------~~~~~~V~lTG-GEPll~~-~l~~li~~l-~~~g~~-----v~leTNGtl~~--~~l~~~d-~v~vs~ 126 (238)
T TIGR03365 64 ELKALG------GGTPLHVSLSG-GNPALQK-PLGELIDLG-KAKGYR-----FALETQGSVWQ--DWFRDLD-DLTLSP 126 (238)
T ss_pred HHHHHh------CCCCCeEEEeC-CchhhhH-hHHHHHHHH-HHCCCC-----EEEECCCCCcH--HHHhhCC-EEEEeC
Confidence 887642 13578899999 9999995 688888876 466876 99999998642 1233344 568999
Q ss_pred CCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeC
Q 011838 330 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 376 (476)
Q Consensus 330 da~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~ 376 (476)
|+++... . ..++...++++. + .+ +.++.+.+|+..
T Consensus 127 K~~~sg~-------~--~~~~~~~~~ik~-l-~~-~~~~~vK~Vv~~ 161 (238)
T TIGR03365 127 KPPSSGM-------E--TDWQALDDCIER-L-DD-GPQTSLKVVVFD 161 (238)
T ss_pred CCCCCCC-------C--CcHHHHHHHHHH-h-hh-cCceEEEEEECC
Confidence 9987521 1 136777777775 3 33 468888888763
No 47
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.68 E-value=7.2e-15 Score=154.17 Aligned_cols=213 Identities=20% Similarity=0.244 Sum_probs=144.8
Q ss_pred CCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCC-C-CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc
Q 011838 199 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM-G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 276 (476)
Q Consensus 199 G~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~-g-~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP 276 (476)
...++.+..+| ++|..+-+ +.+||++|.||+..+. + ....++.+++.+.+..+.+ ..++..|.|+| |||
T Consensus 96 ~spvpGl~HrY-p~rvLl~v--T~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~-----~p~I~~VlLSG-GDP 166 (417)
T TIGR03820 96 DSPVPGITHRY-PDRVLFLV--SNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRN-----TPQIRDVLLSG-GDP 166 (417)
T ss_pred cCCCCCceecc-CCEEEEEE--cCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHh-----cCCCCEEEEeC-Ccc
Confidence 45678888888 67666665 7999999999998652 1 2245677766665554432 14789999999 999
Q ss_pred cCCHHHHHH-HHHHHHHhcCCCCCCCeEEEEeC-----Cc--hHHHHHHHhc-CCeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011838 277 LHNVENVIK-AANIMVHEQGLHFSPRKVTVSTS-----GL--VPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKY 347 (476)
Q Consensus 277 LLn~d~V~~-ai~~l~~~~Gl~i~~r~ItVsTN-----G~--~p~i~~L~~~-~~~~LaISLda~~de~r~~I~p~~~~~ 347 (476)
|+..+..++ +++.+.+-.++ +.|.+.|+ +. .+++.++++. ..+++.++++++. |+
T Consensus 167 Lll~d~~L~~iL~~L~~IphV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~-Ei----------- 230 (417)
T TIGR03820 167 LLLSDDYLDWILTELRAIPHV----EVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR-EI----------- 230 (417)
T ss_pred ccCChHHHHHHHHHHhhcCCC----ceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH-hC-----------
Confidence 997664444 35655442233 35788888 42 3566555544 4678889999984 32
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC-CCCCcHHHHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ-FTPTTDEKMIEFRN 425 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~-~~~ps~e~i~~f~~ 425 (476)
.+++++++++ +.++|..+..+.|+++||||+.+-+.+|.+-+-.+++ -..|....+..|.. |+.|- ++..++.+
T Consensus 231 -t~~a~~Al~~--L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~-~~g~~I~~ 306 (417)
T TIGR03820 231 -TASSKKALAK--LADAGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPV-GKGIEIIE 306 (417)
T ss_pred -hHHHHHHHHH--HHHcCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcH-HHHHHHHH
Confidence 3678999997 4789999999999999999999999999887776664 23333445666654 55554 44444444
Q ss_pred HHHh----CCCeEEEccCC
Q 011838 426 ILAG----AGCTVFLRLSR 440 (476)
Q Consensus 426 ~L~~----~Gi~v~vR~~~ 440 (476)
.|+. ..++.+|+...
T Consensus 307 ~lr~~~sG~~vP~~v~d~p 325 (417)
T TIGR03820 307 SLIGHTSGFAVPTYVVDAP 325 (417)
T ss_pred HHHHhCCCCCceEEEEecC
Confidence 4443 44555665543
No 48
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.68 E-value=6.3e-15 Score=155.54 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=122.7
Q ss_pred eEEEEEec-CCCCCCCCCCCCCCCC-----C-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHH-HHHH
Q 011838 214 TTVCVSSQ-VGCAMNCQFCYTGRMG-----L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-NVIK 285 (476)
Q Consensus 214 ~tlCVSsq-~GCnl~C~FC~tg~~g-----~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d-~V~~ 285 (476)
.++.+-.+ ..||++|.||+..... . ...|+.+++...|.++.+. .+.+...|.|.| ||||++.+ .+.+
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~---~~~~~v~i~f~G-GEPlL~~~~~~~~ 88 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINS---QTMPQVLFTWHG-GETLMRPLSFYKK 88 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHc---CCCCeEEEEEEc-cccCCCcHHHHHH
Confidence 34444434 6899999999974321 1 1347876666555544321 112344578899 99999965 4444
Q ss_pred HHHHHHH-hcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC-CCCcHHHHHHHHHHHHH
Q 011838 286 AANIMVH-EQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN-RKYKLGLLIETLREELH 361 (476)
Q Consensus 286 ai~~l~~-~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~-~~~~le~vleal~~~l~ 361 (476)
+++++.+ ..+.+ ..++|.|||++ +++.+++.+..+.+.||||++ ++.|+..++.. ++.++++++++++. +
T Consensus 89 ~~~~~~~~~~~~~---i~~~i~TNG~ll~~e~~~~l~~~~~~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~--l 162 (412)
T PRK13745 89 ALELQKKYARGRQ---IDNCIQTNGTLLTDEWCEFFRENNFLVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINL--L 162 (412)
T ss_pred HHHHHHHHcCCCc---eEEEEeecCEeCCHHHHHHHHHcCeEEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHH--H
Confidence 5553321 12222 24889999974 677777766667889999998 57888887642 35689999999996 4
Q ss_pred hhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccC
Q 011838 362 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNP 406 (476)
Q Consensus 362 ~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP 406 (476)
.+.|..+.+.+|+.+. +.+++.++.++++++++ .++++|+.|
T Consensus 163 ~~~gi~~~i~~vv~~~---n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 163 KKHGVEWNAMAVVNDF---NADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HHcCCCEEEEEEEcCC---ccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 6678888887777663 34577888999998887 688888766
No 49
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.65 E-value=7.3e-15 Score=144.84 Aligned_cols=217 Identities=16% Similarity=0.285 Sum_probs=164.9
Q ss_pred EEEecCCCeeEEEEeccCC-----CceEEEEEecCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCC
Q 011838 193 LFMLDDGLVIETVVIPCNR-----GRTTVCVSSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGS 264 (476)
Q Consensus 193 l~~l~DG~~IEsVlip~~~-----~r~tlCVSsq~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~ 264 (476)
..++.+-..|-+.+..++. +..|+. ..|||++|.||++|.. +.+...+++++.+.+...++ .|
T Consensus 95 ~C~v~~~~~vas~flH~GEE~~LvpSgTVF---FsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~------~G 165 (335)
T COG1313 95 FCRVKEKPYVASEFLHFGEEPPLVPSGTVF---FSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR------HG 165 (335)
T ss_pred ccccCceeeeeccccccCcCCcccCCceEE---ecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH------hc
Confidence 5566666666666654421 234655 4899999999999974 34678999999988877654 37
Q ss_pred eEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-HHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcC
Q 011838 265 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNES-NCALAVSLNATTDEVRNWIMP 342 (476)
Q Consensus 265 i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-p~i~~L~~~~-~~~LaISLda~~de~r~~I~p 342 (476)
..||.|.| |||+.|...|+++++++... +. +..+|||+. ++..++++.. |+.| -+++-.|++--.++..
T Consensus 166 akNvN~Vg-g~Ptp~lp~Ile~l~~~~~~--iP-----vvwNSnmY~s~E~l~lL~gvVDiyL-~DfKYgNdeca~kySk 236 (335)
T COG1313 166 AKNVNFVG-GDPTPHLPFILEALRYASEN--IP-----VVWNSNMYMSEETLKLLDGVVDIYL-PDFKYGNDECAEKYSK 236 (335)
T ss_pred CcceeecC-CCCCCchHHHHHHHHHHhcC--CC-----EEEecCCccCHHHHHHhhccceeee-cccccCCHHHHHHhhc
Confidence 88999999 99999999999999976433 54 899999985 7888888865 8888 8999999998888877
Q ss_pred CCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHH-HHHHHHHHhcC-C--CeEEEEe-ccCCCCC-C----C
Q 011838 343 INRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD-AKRLIGLVQGI-P--CKINLIS-FNPHCGS-Q----F 412 (476)
Q Consensus 343 ~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed-~~~La~ll~~l-~--~~VnLIp-~nP~~~~-~----~ 412 (476)
+. .| ++-+.+++.. .......+.++..++||. .++ -+.+.+|+... + ..||++. |.|.... . -
T Consensus 237 vp-~Y-~eVv~rn~~~--~~~~~g~~iiRHLVlPgh---lecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~ 309 (335)
T COG1313 237 VP-NY-WEVVTRNILE--AKEQVGGLIIRHLVLPGH---LECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEIN 309 (335)
T ss_pred CC-ch-HHHHHHHHHH--HHHhcCceEEEEEecCCc---hhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhc
Confidence 64 34 6777788875 334444789999999983 333 56677887753 3 4788886 8887432 2 3
Q ss_pred CCCcHHHHHHHHHHHHhCCCeE
Q 011838 413 TPTTDEKMIEFRNILAGAGCTV 434 (476)
Q Consensus 413 ~~ps~e~i~~f~~~L~~~Gi~v 434 (476)
++.+.++++++.++.++.|+.-
T Consensus 310 R~lt~eE~e~a~~~a~~~gl~~ 331 (335)
T COG1313 310 RRLTREEYEKALEYAEKLGLTN 331 (335)
T ss_pred ccCCHHHHHHHHHHHHHcCCce
Confidence 6788999999999999999864
No 50
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=151.44 Aligned_cols=172 Identities=13% Similarity=0.197 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCCCCCcc-CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhc--CCCCCC
Q 011838 224 CAMNCQFCYTGRMGLKR-HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ--GLHFSP 300 (476)
Q Consensus 224 Cnl~C~FC~tg~~g~~r-~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~--Gl~i~~ 300 (476)
||++|.||+........ .|+.+.+-+.+..+.+... ... -.|+|.| |||||+.+.+.+.+..+..+. |..
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~--~~~-v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~~~~--- 90 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASN--GDK-VTFTWQG-GEPLLAGLDFYRKAVALQQKYANGKT--- 90 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCC--CCe-eEEEEEC-CccccchHHHHHHHHHHHHHHhcCCe---
Confidence 99999999987644322 3554433333333332211 123 3499999 999999666666555444332 332
Q ss_pred CeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC-CCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC
Q 011838 301 RKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPI-NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 377 (476)
Q Consensus 301 r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~-~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~G 377 (476)
-.-+++|||++ +++.+++.+.++.+.||||+| +++|++.++. +++.+++.++++++. +++.+..+.+-+|+-+
T Consensus 91 i~~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~--L~~~~v~~~~~~vv~~- 166 (378)
T COG0641 91 ISNALQTNGTLLNDEWAEFLAEHDFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLEL--LQAHGVDFNTLTVVNR- 166 (378)
T ss_pred eEEEEEEcccccCHHHHHHHHhcCceEEEeccCc-hHhccccccCCCCCccHHHHHHHHHH--HHHcCCcEEEEEEEch-
Confidence 23459999985 899999998888999999999 7899988864 567889999999996 4667777777777444
Q ss_pred CCCCHHHHHHHHHHHhcCC-CeEEEEeccCCC
Q 011838 378 VNDSFDDAKRLIGLVQGIP-CKINLISFNPHC 408 (476)
Q Consensus 378 vNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~ 408 (476)
++.++..++.+++...+ ..+.++|..+..
T Consensus 167 --~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 167 --QNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred --hHhhCHHHHHHHHHHcccceEEEEecccCC
Confidence 45677888889987766 367778865543
No 51
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.64 E-value=1.2e-14 Score=130.15 Aligned_cols=155 Identities=23% Similarity=0.418 Sum_probs=114.4
Q ss_pred EecCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHh--
Q 011838 219 SSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE-- 293 (476)
Q Consensus 219 Ssq~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~-- 293 (476)
..+.|||++|.||..+.. ...+.++++++++.+...... .++..|.|.| |||+++++. .+.+..+.+.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~-----~~~~~i~~~~-gep~~~~~~-~~~~~~~~~~~~ 74 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQD-----KGVKEIFFGG-GEPTLHPDF-IELLELLRKIKK 74 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHH-----TTHEEEEEES-STGGGSCHH-HHHHHHHHHCTC
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHh-----cCCcEEEEee-cCCCcchhH-HHHHHHHHHhhc
Confidence 457999999999999863 345678999999999876411 2477777777 999999764 4444444444
Q ss_pred cCCCCCCCeEEEEeCCch--H-HHHHHHhcCCeEEEEeeCCCCHH-HHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-E
Q 011838 294 QGLHFSPRKVTVSTSGLV--P-QLKQFLNESNCALAVSLNATTDE-VRNWIMPINRKYKLGLLIETLREELHFKNNYK-V 368 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~--p-~i~~L~~~~~~~LaISLda~~de-~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V 368 (476)
.++ ++.+.|||.. + .++.+.+.+...+.+++++.+++ .++.+. +..++++++++++. +.+.|.+ +
T Consensus 75 ~~~-----~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l~~--l~~~g~~~~ 144 (166)
T PF04055_consen 75 RGI-----RISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN---RGKSFERVLEALER--LKEAGIPRV 144 (166)
T ss_dssp TTE-----EEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHHHH--HHHTTSETE
T ss_pred ccc-----ceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc---CCCCHHHHHHHHHH--HHHcCCCcE
Confidence 244 5999999985 3 56667776656778999999999 665543 34578999999997 4677777 7
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHH
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLV 392 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll 392 (476)
...++++||.| .++++++++|+
T Consensus 145 ~~~i~~~~~~~--~~e~~~~~~~i 166 (166)
T PF04055_consen 145 IIFIVGLPGEN--DEEIEETIRFI 166 (166)
T ss_dssp EEEEEEBTTTS--HHHHHHHHHHH
T ss_pred EEEEEEeCCCC--HHHHHHHhCcC
Confidence 88888889865 57888888875
No 52
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.62 E-value=3.1e-14 Score=130.80 Aligned_cols=176 Identities=21% Similarity=0.331 Sum_probs=125.3
Q ss_pred ecCCCCCCCCCCCCCCCCCccCCCHH---HHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHh-cC
Q 011838 220 SQVGCAMNCQFCYTGRMGLKRHLTAA---EIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE-QG 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g~~r~lt~~---EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~-~G 295 (476)
++.|||++|.||+.+........... ++.+.+.... ..++..+.|+| |||+++. .+.++++.+.+. .+
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~~~ 74 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAK------ERGVEVVILTG-GEPLLYP-ELAELLRRLKKELPG 74 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHH------hcCceEEEEeC-CcCCccH-hHHHHHHHHHhhCCC
Confidence 46899999999998765433222222 3333333221 13577788887 9999997 678888866543 24
Q ss_pred CCCCCCeEEEEeCCch--H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEE
Q 011838 296 LHFSPRKVTVSTSGLV--P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 372 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~--p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~iey 372 (476)
+ .+.+.|||.. + .++++.+.+...+.+|+++.+++.++.+. ++...+++++++++. +.+.+..+.+.+
T Consensus 75 ~-----~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~--~~~~~~~~~~~~ 145 (204)
T cd01335 75 F-----EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKE--LREAGLGLSTTL 145 (204)
T ss_pred c-----eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHH--HHHcCCCceEEE
Confidence 4 4999999975 4 56777776656678999999999998886 345679999999997 356688888888
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeccCCCCCCCC
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFT 413 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~--~~VnLIp~nP~~~~~~~ 413 (476)
++..+.++ .++..+..+++.... ..+++.+|.|.+++.+.
T Consensus 146 i~g~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 146 LVGLGDED-EEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred EEecCCCh-hHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 87777665 456666666666553 46888899999887654
No 53
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.62 E-value=4.5e-15 Score=150.61 Aligned_cols=218 Identities=18% Similarity=0.236 Sum_probs=143.8
Q ss_pred CeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccC--CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc
Q 011838 200 LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH--LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL 277 (476)
Q Consensus 200 ~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~--lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL 277 (476)
..|..++.+| ++|..+-+ +.+|++.|.||+...+....+ ++.+++-..+. |+..+ ..|.+|.|+| |+||
T Consensus 100 s~Vpgl~HrY-~drvLll~--t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~----YIa~h-PeI~eVllSG-GDPL 170 (369)
T COG1509 100 SPVPGLTHRY-PDRVLLLV--TGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALD----YIAAH-PEIREVLLSG-GDPL 170 (369)
T ss_pred CCCCCceeec-CCeEEEEe--cCcccceeeecccccccccccccCCHHHHHHHHH----HHHcC-chhheEEecC-CCcc
Confidence 4677788888 67776666 799999999999876543322 34444433333 34333 6799999999 9999
Q ss_pred CCH----HHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhc--CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 278 HNV----ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE--SNCALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 278 Ln~----d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~--~~~~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
+-. +.+++.|+.+.|-..+.|+.|-..+..--+.+.+.+++.. ..+++...++++++ |+ ++
T Consensus 171 ~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E-----it--------~e 237 (369)
T COG1509 171 SLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE-----IT--------PE 237 (369)
T ss_pred ccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh-----cC--------HH
Confidence 943 3444444444445555555555555555555777777776 37787788888864 33 35
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe-EEEEeccCCCCC-CCCCCcHHHHHHHHHH---
Q 011838 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK-INLISFNPHCGS-QFTPTTDEKMIEFRNI--- 426 (476)
Q Consensus 352 vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~-VnLIp~nP~~~~-~~~~ps~e~i~~f~~~--- 426 (476)
..++++. +...|..+.-+.||++||||+++-+.+|.+-|...++. ..+-...+..|. .|+.+. ++..++.+.
T Consensus 238 ~~~A~~~--L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i-~~~~~i~~~lr~ 314 (369)
T COG1509 238 AREACAK--LRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPI-AEGLQIVEELRG 314 (369)
T ss_pred HHHHHHH--HHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccH-HHHHHHHHHHHH
Confidence 6778876 46789999999999999999999999999888766542 222233455555 455554 333334444
Q ss_pred -HHhCCCeEEEccCCCC
Q 011838 427 -LAGAGCTVFLRLSRGD 442 (476)
Q Consensus 427 -L~~~Gi~v~vR~~~G~ 442 (476)
+..+.+++.++.-.|.
T Consensus 315 ~~SG~~~P~~v~d~pgg 331 (369)
T COG1509 315 RTSGYAVPTLVVDIPGG 331 (369)
T ss_pred hCCCcccceeEEecCCC
Confidence 4445566777765553
No 54
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.58 E-value=2.9e-13 Score=137.43 Aligned_cols=177 Identities=19% Similarity=0.322 Sum_probs=129.2
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCCCC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRMGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
+..+-+..+..||++|.||+...... ...++.++....+..+.+. +. +..+.|.| |||+++ ..+.++++...
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~----g~-~~~v~~~g-GEPll~-~d~~ei~~~~~ 90 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL----GE-IPVVIFTG-GEPLLR-PDLLEIVEYAR 90 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc----CC-eeEEEEeC-CCcccc-ccHHHHHHHHh
Confidence 34566667999999999998766543 5678888888555554332 12 77788888 999999 56788888665
Q ss_pred HhcCCCCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 292 HEQGLHFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
+..++ +++++|||+ . ..++++.+.+...+.||+|+.+++.|+.+++. +..++.++++++. ..+.|..+
T Consensus 91 ~~~~~-----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~--~g~~~~~~~~i~~--~~~~g~~~ 161 (347)
T COG0535 91 KKGGI-----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGV--KGVFKRAVEAIKN--LKEAGILV 161 (347)
T ss_pred hcCCe-----EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCC--CcHHHHHHHHHHH--HHHcCCee
Confidence 44465 499999994 3 34566666665567899999999999888875 3468999999997 35677665
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCC
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHC 408 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~ 408 (476)
.+.+++ .+.| .+++.++++++..+++ .+++.++.|..
T Consensus 162 ~~~~~v-~~~n--~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 162 VINTTV-TKIN--YDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred eEEEEE-ecCc--HHHHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 555554 4444 4688999999988884 56777777664
No 55
>PRK07094 biotin synthase; Provisional
Probab=99.56 E-value=7.7e-13 Score=135.02 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=139.1
Q ss_pred ecCCCCCCCCCCCCCCCC--Ccc-CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCHHHHHHHHHHHHHhcC
Q 011838 220 SQVGCAMNCQFCYTGRMG--LKR-HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQG 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g--~~r-~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~d~V~~ai~~l~~~~G 295 (476)
.+.||+++|.||..+... ..+ .++++++++.+..+.+ .+++.|.|.| |+ |..+.+.+.++++.+.+..+
T Consensus 45 ~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~------~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~ 117 (323)
T PRK07094 45 FSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE------LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELD 117 (323)
T ss_pred ECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCC
Confidence 379999999999976431 122 3699999999876543 3788899998 86 66777889999987765445
Q ss_pred CCCCCCeEEEEeCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEE
Q 011838 296 LHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 374 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvL 374 (476)
+. +++++.... +.++.|.+.+-..+.+++++.+++.++++.+ +.++++.+++++. ..+.|..+...+++
T Consensus 118 l~-----i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i~~--l~~~Gi~v~~~~ii 187 (323)
T PRK07094 118 VA-----ITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHP---GMSFENRIACLKD--LKELGYEVGSGFMV 187 (323)
T ss_pred ce-----EEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCeecceEEE
Confidence 53 666543333 4567777777445679999999999999876 3578999999996 46778765544333
Q ss_pred eCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHH
Q 011838 375 LAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILA 428 (476)
Q Consensus 375 I~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~ 428 (476)
|. .++.+++.+.++++++++. .+.+.+|.|.+++++ .+++.++..++...++
T Consensus 188 --Glpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 188 --GLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred --ECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 33 4678999999999999875 678889999988764 4466666666655554
No 56
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=124.89 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=117.7
Q ss_pred cCCCCCCCCCCCCCCCC-----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcC
Q 011838 221 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQG 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g-----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~G 295 (476)
++|||+.|.||+++... ....++++|+++.+.++.+. .+-+-|.++| |||++-.+.+++.|+.+.
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~-----~g~d~vRiSG-~EP~l~~EHvlevIeLl~---- 117 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKK-----RGCDLVRISG-AEPILGREHVLEVIELLV---- 117 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHh-----cCCcEEEeeC-CCccccHHHHHHHHHhcc----
Confidence 69999999999986422 23568999999999877543 4667788999 999999999999999542
Q ss_pred CCCCCCeEEEEeCCch----HH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEE
Q 011838 296 LHFSPRKVTVSTSGLV----PQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 370 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~----p~-i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~i 370 (476)
.+...+.|||+. +. +++|.....+.+.+|+++++++.+.+|++.+..| +.-.+++++. +...|.+++.
T Consensus 118 ----~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr~--L~~~g~rf~p 190 (228)
T COG5014 118 ----NNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKALRH--LHGKGHRFWP 190 (228)
T ss_pred ----CceEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHHH--HHhcCceeee
Confidence 245899999973 33 4556555677889999999999999999988777 8889999995 4566766665
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCC
Q 011838 371 EYVMLAGVNDSFDDAKRLIGLVQGIP 396 (476)
Q Consensus 371 eyvLI~GvNDs~ed~~~La~ll~~l~ 396 (476)
..+. ++- .++..++|++.+.+++
T Consensus 191 A~~~--~f~-~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 191 AVVY--DFF-REDGLKELAKRLGEHP 213 (228)
T ss_pred hhhh--ccc-hhhhHHHHHHHhccCC
Confidence 4332 221 2334455888887654
No 57
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.51 E-value=2.4e-12 Score=134.36 Aligned_cols=192 Identities=14% Similarity=0.163 Sum_probs=144.1
Q ss_pred ecCCCCCCCCCCCCCCC-C-CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC--CHHHHHHHHHHHHHhcC
Q 011838 220 SQVGCAMNCQFCYTGRM-G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH--NVENVIKAANIMVHEQG 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~-g-~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL--n~d~V~~ai~~l~~~~G 295 (476)
.+.+|+.+|.||.-... + ..+.++++||++.+..+.+ .+++.|.++| |||.. ..+.+.++++.+.+..
T Consensus 80 ~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~------~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~- 151 (371)
T PRK09240 80 LSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK------LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF- 151 (371)
T ss_pred EcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh------CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-
Confidence 47999999999986432 1 1256899999999887643 3799999999 99776 4678888888775432
Q ss_pred CCCCCCeEEEEeCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEE
Q 011838 296 LHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 374 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvL 374 (476)
. .++++++.+. +.+++|.+.+-..+.+++++.+++.+.+|.+.+++.++++.+++++. ..+.|.+ .+...+
T Consensus 152 -p----~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~--a~~aG~~-~v~~g~ 223 (371)
T PRK09240 152 -S----SVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPER--AGRAGIR-KIGLGA 223 (371)
T ss_pred -C----CceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHH--HHHcCCC-eeceEE
Confidence 1 3666666654 67888888885577899999999999999976667789999999997 4667765 567788
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-------eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHH
Q 011838 375 LAGVNDSFDDAKRLIGLVQGIPC-------KINLISFNPHCGSQF---TPTTDEKMIEFRNILA 428 (476)
Q Consensus 375 I~GvNDs~ed~~~La~ll~~l~~-------~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~ 428 (476)
|-|++++.+|..+++..++.+.. .|.++.++|.++ ++ .+.+.+++.+....++
T Consensus 224 i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~R 286 (371)
T PRK09240 224 LLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFR 286 (371)
T ss_pred EecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999998887665532 455556888877 43 3456666666555544
No 58
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.46 E-value=2.2e-11 Score=122.40 Aligned_cols=189 Identities=19% Similarity=0.257 Sum_probs=128.3
Q ss_pred cCCCCCCCCCCCCCCCC-----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEE-ecCCcccCCH-HHHHHHHHHHHHh
Q 011838 221 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF-MGMGEPLHNV-ENVIKAANIMVHE 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g-----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf-~GmGEPLLn~-d~V~~ai~~l~~~ 293 (476)
+.||+++|.||...... ..+.++++|+++++..+.+ .+++.+.+ +|.++|.... ...++.+..+.++
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 109 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA------AGATRFCLVASGRGPKDREFMEYVEAMVQIVEE 109 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH------CCCCEEEEEEecCCCChHHHHHHHHHHHHHHHh
Confidence 79999999999975431 2356889999998876543 25555433 3326766532 2233333334445
Q ss_pred cCCCCCCCeEEEEeCCch-H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGLV-P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~-p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.|+. +.+ +.|.. + .++.|.+.+-..+.++++ .+++.++++.+ +.++++.+++++. ..+.|.++...
T Consensus 110 ~~i~-----~~~-~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~--l~~~Gi~v~~~ 177 (296)
T TIGR00433 110 MGLK-----TCA-TLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLEN--AKKAGLKVCSG 177 (296)
T ss_pred CCCe-----EEe-cCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHH--HHHcCCEEEEe
Confidence 5654 544 44653 4 456666667556679999 78999988774 4578999999997 46778776654
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHh
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~---~~~ps~e~i~~f~~~L~~ 429 (476)
+|-|.+++.+++.+++++++.++. .+.+.++.|.+++. +.+++.++..++...++.
T Consensus 178 --~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~ 237 (296)
T TIGR00433 178 --GIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARI 237 (296)
T ss_pred --EEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 455788999999999999998875 47777788887764 466777666666555543
No 59
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.40 E-value=1.2e-12 Score=120.42 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=81.1
Q ss_pred EecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCC---CccCCC---HHHHHHHHHHHHHHhcccCCCeEEE
Q 011838 195 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLT---AAEIVEQAVFARRLLSSEVGSITNV 268 (476)
Q Consensus 195 ~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~lt---~~EIveqv~~~~~~l~~~~~~i~nI 268 (476)
.+.||++++++++ ..|||++|+||+++... ..+.++ .+++++++... ..+..|
T Consensus 9 s~~dG~G~r~~if-------------~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~--------~~~~gV 67 (154)
T TIGR02491 9 DIVNGEGIRVSLF-------------VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN--------PLIDGL 67 (154)
T ss_pred ceecCCCcEEEEE-------------ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc--------CCcCeE
Confidence 4567888887766 48999999999987542 235688 44444444221 135679
Q ss_pred EEecCCcccCCH--HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-HHH------HHHHhcCCeEEEEeeCCCCHHH--H
Q 011838 269 VFMGMGEPLHNV--ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQL------KQFLNESNCALAVSLNATTDEV--R 337 (476)
Q Consensus 269 vf~GmGEPLLn~--d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-p~i------~~L~~~~~~~LaISLda~~de~--r 337 (476)
+|+| ||||+++ +.+.++++.+.+..+++ ..+.|||+. +++ .++++..|+ | ++.+..+++. +
T Consensus 68 t~sG-GEPllq~~~~~l~~ll~~~k~~~~~~-----~~~~~tG~~~~~~~~~~~~~~~l~~~D~-l-iDgk~~~~~~~~~ 139 (154)
T TIGR02491 68 TLSG-GDPLYPRNVEELIELVKKIKAEFPEK-----DIWLWTGYTWEEILEDEKHLEVLKYIDV-L-VDGKFELSKKDLK 139 (154)
T ss_pred EEeC-hhhCCCCCHHHHHHHHHHHHHhCCCC-----CEEEeeCccHHHHhcchhHHHHHhhCCE-E-EechhhhhcccCC
Confidence 9999 9999965 89999999775544654 677799985 333 256766674 4 7887776543 3
Q ss_pred hhHcCC
Q 011838 338 NWIMPI 343 (476)
Q Consensus 338 ~~I~p~ 343 (476)
..+++.
T Consensus 140 ~~~~gs 145 (154)
T TIGR02491 140 LKFRGS 145 (154)
T ss_pred CCCCCC
Confidence 344554
No 60
>PRK06256 biotin synthase; Validated
Probab=99.40 E-value=5.4e-11 Score=122.16 Aligned_cols=202 Identities=15% Similarity=0.165 Sum_probs=138.8
Q ss_pred cCCCCCCCCCCCCCCCC-----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe-cCCcccCC-HHHHHHHHHHHHHh
Q 011838 221 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM-GMGEPLHN-VENVIKAANIMVHE 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g-----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~-GmGEPLLn-~d~V~~ai~~l~~~ 293 (476)
+.||+.+|.||...... ..+.++++||++.+..+.+. ++..+.|. |.++|... .+.+.++++.+.+.
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~ 138 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE------GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE 138 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC------CCCEEEEEecCCCCCchHHHHHHHHHHHHHhc
Confidence 58999999999976431 12458999999999876542 44444443 32456543 35778888877544
Q ss_pred cCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.++. +.+ ++|.. +.+++|.+.+-..+.+++++ +++.++++.+. .++++.+++++. +.+.|.++...
T Consensus 139 ~~i~-----~~~-~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~---~t~~~~i~~i~~--a~~~Gi~v~~~ 206 (336)
T PRK06256 139 TDLE-----ICA-CLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTT---HTYEDRIDTCEM--VKAAGIEPCSG 206 (336)
T ss_pred CCCc-----EEe-cCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCC---CCHHHHHHHHHH--HHHcCCeeccC
Confidence 3432 333 34654 45667777774456789999 99999988653 468999999996 46778765543
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+|-|.+++.++..+++++++.++. .|.+.++.|.+++++ .+++.+++.+....++-.--.+.||-+-|+
T Consensus 207 --~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 207 --GIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred --eEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCch
Confidence 445778999999999999998875 477777888888753 456677777666666543334555555554
No 61
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.36 E-value=8.7e-11 Score=124.81 Aligned_cols=183 Identities=14% Similarity=0.293 Sum_probs=130.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCCHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKAA 287 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn~d~V~~ai 287 (476)
....|.++.|||++|.||..+.. |..|..+++++++++....+ .+...|+|.| +|+|+.+.+.+.+++
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~------~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll 208 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVD------QGVKEIILIAQDTTAYGKDLYRESKLVDLL 208 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHH------CCCcEEEEEeECCCccccCCCCcccHHHHH
Confidence 34567789999999999998653 34577899999999987644 2577888876 688877655677777
Q ss_pred HHHHHhcCCCCCCCeEEEE-e--CCchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011838 288 NIMVHEQGLHFSPRKVTVS-T--SGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 361 (476)
Q Consensus 288 ~~l~~~~Gl~i~~r~ItVs-T--NG~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~ 361 (476)
+.+.+..++. .+.+. + ..+.+++.+++... -..+.+++.+.+++..+.+ ++.++.+++.++++. +
T Consensus 209 ~~i~~~~~i~----~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m---~k~~~~~~~~~~i~~-l- 279 (430)
T TIGR01125 209 EELGKVGGIY----WIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLM---RRPGSGEQQLDFIER-L- 279 (430)
T ss_pred HHHHhcCCcc----EEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhC---CCCCCHHHHHHHHHH-H-
Confidence 7765433332 23332 2 23446665555433 2357799999999987653 466888999999997 3
Q ss_pred hhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 362 FKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 362 ~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++.+..+.+...+|-|. +++++++.++++++++.+. .+++.+|.|.+|+.
T Consensus 280 ~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~ 331 (430)
T TIGR01125 280 REKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTD 331 (430)
T ss_pred HHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCc
Confidence 45544455555555453 5889999999999998874 78888999998874
No 62
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.33 E-value=5.5e-12 Score=112.46 Aligned_cols=92 Identities=23% Similarity=0.548 Sum_probs=56.0
Q ss_pred cCCCCCCCCCCCCCCCCC---ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC--CHHHHHHHHHHHHHhcC
Q 011838 221 QVGCAMNCQFCYTGRMGL---KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH--NVENVIKAANIMVHEQG 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~---~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL--n~d~V~~ai~~l~~~~G 295 (476)
+.|||++|.||+...... ...++ .+.++++..... ..++..|+|+| ||||+ +++.+.++++.+.+. +
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~-----~~~~~~i~l~G-GEPll~~~~~~l~~i~~~~k~~-~ 83 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELK-----NYGIKGIVLTG-GEPLLHENYDELLEILKYIKEK-F 83 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHC-----CCCCCEEEEEC-STGGGHHSHHHHHHHHHHHHHT-T
T ss_pred cCcccccCcCcCCcccCccccccccc-chhhhhhhhHHh-----cCCceEEEEcC-CCeeeeccHhHHHHHHHHHHHh-C
Confidence 688999999999865432 22344 556666544322 14678999999 99999 889999999976544 3
Q ss_pred CCCCCCeEEEEeCCch-HH-----HHHHHhcCCeE
Q 011838 296 LHFSPRKVTVSTSGLV-PQ-----LKQFLNESNCA 324 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~-p~-----i~~L~~~~~~~ 324 (476)
. ..+.+.|||.. .. +.++++..++.
T Consensus 84 ~----~~~~~~tng~~~~~~~~~~~~~~~~~~~vs 114 (139)
T PF13353_consen 84 P----KKIIILTNGYTLDELLDELIEELLDEIDVS 114 (139)
T ss_dssp -----SEEEEEETT--HHHHHHHHHHHHHHTESEE
T ss_pred C----CCeEEEECCCchhHHHhHHHHhccCccEEE
Confidence 3 25899999974 22 33555554543
No 63
>PRK08508 biotin synthase; Provisional
Probab=99.33 E-value=2.2e-10 Score=115.21 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=139.4
Q ss_pred ecCCCCCCCCCCCCCCCC---C--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc--CCHHHHHHHHHHHHH
Q 011838 220 SQVGCAMNCQFCYTGRMG---L--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVH 292 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g---~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL--Ln~d~V~~ai~~l~~ 292 (476)
...||+.+|.||+.+... . .+.++++||++++.++.+ .+++.+++.+.|+-+ ...+.+.++++.+.+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~------~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~ 86 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA------NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKK 86 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH------CCCCEEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 368999999999986521 1 134799999999987654 266778776424422 135678888886653
Q ss_pred hcCCCCCCCeEEE-EeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 293 EQGLHFSPRKVTV-STSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 293 ~~Gl~i~~r~ItV-sTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
.+.+ +.+ .++|.. +.+++|.+.+-..+.+.+++. ++.+.++.+ ..++++.++.++. .++.|. .
T Consensus 87 -~~p~-----l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~---~~~~~~~l~~i~~--a~~~Gi--~ 152 (279)
T PRK08508 87 -EVPG-----LHLIACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICT---THTWEERFQTCEN--AKEAGL--G 152 (279)
T ss_pred -hCCC-----cEEEecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCC---CCCHHHHHHHHHH--HHHcCC--e
Confidence 3333 333 478874 567888888754566788885 566655543 3568999999986 466664 4
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCe-EEEEeccCCCCCCC--CCCcHHHHHHHHHHHHhCCCeEEEccCCCCc
Q 011838 370 FEYVMLAGVNDSFDDAKRLIGLVQGIPCK-INLISFNPHCGSQF--TPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 443 (476)
Q Consensus 370 ieyvLI~GvNDs~ed~~~La~ll~~l~~~-VnLIp~nP~~~~~~--~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~d 443 (476)
+...+|.|.+++.++..+++.++++++.. |-+..++|.++.++ .+.+.++..+....++-.--+..||-.-|++
T Consensus 153 v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~ 229 (279)
T PRK08508 153 LCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGRE 229 (279)
T ss_pred ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChh
Confidence 55678889999999999999999998754 44444667666543 3456777777766665543356777777764
No 64
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.32 E-value=1.1e-10 Score=121.57 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=134.7
Q ss_pred ecCCCCCCCCCCCCCCC-CC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc--CCHHHHHHHHHHHHHhcC
Q 011838 220 SQVGCAMNCQFCYTGRM-GL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVHEQG 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~-g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL--Ln~d~V~~ai~~l~~~~G 295 (476)
.+.+|+.+|.||.-... .. ...++.+||.+.+..+.+ .+++.|.+.| ||+. ...+.+.++++.+.+...
T Consensus 79 ~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~------~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 79 LSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK------SGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFS 151 (366)
T ss_pred ECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh------CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 47999999999997532 11 245899999999987654 3688898888 7743 457889999998765421
Q ss_pred CCCCCCeEEEEeCCc-hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEE
Q 011838 296 LHFSPRKVTVSTSGL-VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 374 (476)
Q Consensus 296 l~i~~r~ItVsTNG~-~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvL 374 (476)
.+.++.+-+ .+.+++|.+.+-..+.+++++.+++.+.+|.+..++.++++.+++++. +.+.|.+ .+...+
T Consensus 152 ------~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~--a~~aG~~-~v~~g~ 222 (366)
T TIGR02351 152 ------SLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPER--AAKAGMR-KIGIGA 222 (366)
T ss_pred ------ccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHH--HHHcCCC-eeceeE
Confidence 123333323 367888888885577899999999999999977777789999999997 4667765 134477
Q ss_pred eCCCCCCHHHHHHHHHHHhcCC-------CeEEEEeccCCCCCCCC---CCcHHHHHHHHHHHH
Q 011838 375 LAGVNDSFDDAKRLIGLVQGIP-------CKINLISFNPHCGSQFT---PTTDEKMIEFRNILA 428 (476)
Q Consensus 375 I~GvNDs~ed~~~La~ll~~l~-------~~VnLIp~nP~~~~~~~---~ps~e~i~~f~~~L~ 428 (476)
|-|++++.++.-.++..++.+. ..|.++.++|..+ .+. +.++.++.+....++
T Consensus 223 i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R 285 (366)
T TIGR02351 223 LLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYR 285 (366)
T ss_pred EEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHH
Confidence 8899999999888887766543 2344445677766 443 334555544444433
No 65
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.31 E-value=3.5e-10 Score=121.23 Aligned_cols=185 Identities=20% Similarity=0.320 Sum_probs=130.0
Q ss_pred CceEEEEEecCCCCCCCCCCCCCC-CCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCCHHHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIK 285 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn~d~V~~ 285 (476)
++....+..+.|||++|.||..+. .|..+..+++++++++..+.+ .++..|+|+| +|+|+.+.+.+.+
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~------~G~keI~l~g~~~~~yG~d~~~~~~l~~ 226 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAA------RGAKEITLLGQIVDSYGHDLPGRPDLAD 226 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHH------CCCeEEEEeeecCCCcccccCChHHHHH
Confidence 345677778999999999999875 344578899999999987643 3688999998 4787765455777
Q ss_pred HHHHHHHhcCCCCCCCeEEEEe-CC--chHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTVST-SG--LVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsT-NG--~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+..|+. ++.+.| +. +.+++.+++... -..+.+++.+.++++.+.+ ++.++.++++++++.
T Consensus 227 Ll~~l~~~~gi~----~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m---~R~~t~e~~~~~i~~- 298 (459)
T PRK14338 227 LLEAVHEIPGLE----RLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRM---RRGYTVARYRELIAR- 298 (459)
T ss_pred HHHHHHhcCCcc----eEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhc---cCCCCHHHHHHHHHH-
Confidence 777665434542 355443 43 335554444432 2457799999999988764 456789999999997
Q ss_pred HHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++....+.+..-+|-|+ +++.+++.+.+++++.++. .+++.+|.|.+++.
T Consensus 299 l-r~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~ 351 (459)
T PRK14338 299 I-REAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTL 351 (459)
T ss_pred H-HHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCCh
Confidence 3 44433344443333222 3789999999999999875 78889999988763
No 66
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.30 E-value=1.7e-10 Score=122.98 Aligned_cols=182 Identities=13% Similarity=0.276 Sum_probs=127.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC-----------------C
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----------------G 274 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm-----------------G 274 (476)
+....+.++.|||++|.||..+.. |..|..++++|++++....+ .++..|+|.|. |
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~------~g~kei~l~~~d~~~yg~d~~~~~~~~~~ 211 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVK------AGVKELLVISQDTSAYGVDVKYRTGFWNG 211 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHH------CCCceEEEEecChhhhccccccccccccc
Confidence 345566779999999999997753 34578899999999987643 25777887742 3
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCCeE-EEEeCCchHHHHHHHhcCCe--EEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 275 EPLHNVENVIKAANIMVHEQGLHFSPRKV-TVSTSGLVPQLKQFLNESNC--ALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 275 EPLLn~d~V~~ai~~l~~~~Gl~i~~r~I-tVsTNG~~p~i~~L~~~~~~--~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
+|+ .+.+.++++.+.+ .|+. .++ .+.+++..+++.+++..+.+ .+.|++.+.+++..+.+ ++.++.++
T Consensus 212 ~~~--~~~~~~Ll~~l~~-~~~~---~r~~~~~p~~~~dell~~m~~g~~~~~l~IglESgs~~vLk~m---~r~~~~~~ 282 (440)
T PRK14862 212 RPV--KTRMTDLCEALGE-LGAW---VRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQHASPRVLKRM---KRPASVEK 282 (440)
T ss_pred cch--hhHHHHHHHHHHh-cCCE---EEEecCCCCcCCHHHHHHHhcCCCccccccccccCCHHHHHhc---CCCCCHHH
Confidence 344 2467788886654 3541 122 24556666666666555533 67789999999988754 46788899
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 352 LIETLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 352 vleal~~~l~~~~g~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
.+++++. + ++....+.+...+|-| -++++++++++.+|+++++. .+++.+|.|.+++.
T Consensus 283 ~~~~i~~-l-r~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~ 342 (440)
T PRK14862 283 TLERIKK-W-REICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGAT 342 (440)
T ss_pred HHHHHHH-H-HHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCc
Confidence 9999987 3 4443344444444433 24889999999999999875 78888999998864
No 67
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.26 E-value=1.2e-09 Score=117.37 Aligned_cols=178 Identities=16% Similarity=0.253 Sum_probs=129.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCC--C-CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRM--G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~--g-~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
...+.++.||+++|.||..+.. + ..|..+++.+++++....+.+ .++..|.|.+ +.++.+.+.+.++++.+.
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~----~~~~~i~f~D-d~f~~~~~~~~~l~~~l~ 271 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF----PEVREFFFDD-DTFTDDKPRAEEIARKLG 271 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhc----CCCcEEEEeC-CCCCCCHHHHHHHHHHHh
Confidence 3467778999999999986532 2 236679999999998765432 3678888877 778888888888888764
Q ss_pred HhcCCCCCCCeEEEEeCC-chHH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 292 HEQGLHFSPRKVTVSTSG-LVPQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG-~~p~-i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
+.|+. ....+.. +.++ ++.+.+.+-..+.+.+.+.+++..+.+ ++..+.+++.++++. .++.|..+.
T Consensus 272 -~~~i~-----~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~---~K~~~~~~~~~~i~~--~~~~Gi~v~ 340 (472)
T TIGR03471 272 -PLGVT-----WSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNI---KKGLTVEIARRFTRD--CHKLGIKVH 340 (472)
T ss_pred -hcCce-----EEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh---cCCCCHHHHHHHHHH--HHHCCCeEE
Confidence 44553 3333322 3344 455555565567899999999988765 455678999999986 577888777
Q ss_pred EEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q 011838 370 FEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS 410 (476)
Q Consensus 370 ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~ 410 (476)
..+++ +|| ++.+++.+..+++..++. .+.+..+.|.+|+
T Consensus 341 ~~~IiGlPg--et~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 341 GTFILGLPG--ETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EEEEEeCCC--CCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 66554 355 889999999999998864 5666677788776
No 68
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.24 E-value=2e-09 Score=111.84 Aligned_cols=200 Identities=14% Similarity=0.227 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCCCCCCccCCCH----HHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHLTA----AEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~lt~----~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.-|+.+|.||......... -.. +.+..++....+.+. ...+..|.|-| |+|++ ..+.+.++++.+.+...+
T Consensus 8 PFC~~~C~yC~f~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~--~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKS-GPKEEYTQALCQDLKHALSQTD--QEPLESIFIGG-GTPNTLSVEAFERLFESIYQHASL 83 (360)
T ss_pred CCCcCcCCCCCCcccCcCc-cCHHHHHHHHHHHHHHHHHhcC--CCcccEEEeCC-CchhcCCHHHHHHHHHHHHHhCCC
Confidence 3499999999965432111 122 233333332222121 13477787777 99985 567777777766443332
Q ss_pred CCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEE
Q 011838 297 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEY 372 (476)
Q Consensus 297 ~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~iey 372 (476)
. ....+++.||+- . +.++.|.+.+-..+.|++++.+++..+.+ ++.++.++++++++. +++.|.. +.+-.
T Consensus 84 ~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~~~~~~ai~~--l~~~G~~~v~~dl 157 (360)
T TIGR00539 84 S-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSAKNIAPAIET--ALKSGIENISLDL 157 (360)
T ss_pred C-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCHHHHHHHHHH--HHHcCCCeEEEec
Confidence 2 123699999974 2 45666666665678899999999998876 356789999999996 4667763 44443
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC-----CCCcHHHH----HHHHHHHHhCCCe
Q 011838 373 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKM----IEFRNILAGAGCT 433 (476)
Q Consensus 373 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~-----~~ps~e~i----~~f~~~L~~~Gi~ 433 (476)
+. +|| ++.+++.+..+++..++. ++.+.++.|.+++.+ +.|+.++. ....+.|.+.|+.
T Consensus 158 i~GlPg--qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 227 (360)
T TIGR00539 158 MYGLPL--QTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK 227 (360)
T ss_pred cCCCCC--CCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 32 355 678899999999998875 888888888877643 13444433 3345668888876
No 69
>PRK05481 lipoyl synthase; Provisional
Probab=99.23 E-value=2.4e-09 Score=108.37 Aligned_cols=195 Identities=13% Similarity=0.129 Sum_probs=137.6
Q ss_pred ecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc----ccCCHHHHHHHHHHHHHhc-
Q 011838 220 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQ- 294 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE----PLLn~d~V~~ai~~l~~~~- 294 (476)
.+.||+.+|.||..+... .+.+++++|++++..+.+ .|++.|+|.| |+ |-...+.+.++++.+.+..
T Consensus 59 is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~------~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~~~~p 130 (289)
T PRK05481 59 LGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR------MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIRELNP 130 (289)
T ss_pred ecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH------CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHHhhCC
Confidence 489999999999977643 366899999999987654 3789999999 76 3233456777777765432
Q ss_pred CCCCCCCeEEEEeC-Cc--hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 295 GLHFSPRKVTVSTS-GL--VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 295 Gl~i~~r~ItVsTN-G~--~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
++ +|.+.|. .. .+.+.++.+.+.-.+ -.++-+.++.++++.+ +++.++.++.++. ..+.-..+.+.
T Consensus 131 ~i-----rI~~l~~~~~~~~e~L~~l~~ag~~i~-~~~~ets~~vlk~m~r---~~t~e~~le~i~~--ar~~~pgi~~~ 199 (289)
T PRK05481 131 GT-----TIEVLIPDFRGRMDALLTVLDARPDVF-NHNLETVPRLYKRVRP---GADYERSLELLKR--AKELHPGIPTK 199 (289)
T ss_pred Cc-----EEEEEccCCCCCHHHHHHHHhcCccee-eccccChHHHHHHhCC---CCCHHHHHHHHHH--HHHhCCCCeEe
Confidence 33 3665554 22 367778877763332 3334445778776653 5788999999986 34442234555
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHhCCCe
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
..+|-|..++++|..+..+++++++. .+++.+|-|.....+ ....+++.+++.+...+.|+.
T Consensus 200 t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~ 265 (289)
T PRK05481 200 SGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFL 265 (289)
T ss_pred eeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCch
Confidence 66777889999999999999999975 788889887322122 234468888889999999985
No 70
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.23 E-value=2.7e-09 Score=111.70 Aligned_cols=202 Identities=12% Similarity=0.179 Sum_probs=134.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCCHHH----HHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHLTAAE----IVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~lt~~E----Iveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.-|+.+|.||...........+.++ +++++......+ .+.++..|.|-| |+|++ ..+.+.++++.+.+..++
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~--~~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l~~~~~~ 90 (378)
T PRK05660 14 PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLV--QGREVHSIFIGG-GTPSLFSAEAIQRLLDGVRARLPF 90 (378)
T ss_pred CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhc--cCCceeEEEeCC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 3499999999975432222333333 444444322212 124688888877 99998 467788888877665444
Q ss_pred CCCCCeEEEEeCCc-h--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 297 HFSPRKVTVSTSGL-V--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 297 ~i~~r~ItVsTNG~-~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
. ....|+++||+- + +.+..|.+.+-..|.|++++.+++..+.+. +.++.++++++++. +++.|... +.+-
T Consensus 91 ~-~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai~~--~~~~G~~~-v~~d 163 (378)
T PRK05660 91 A-PDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG---RIHGPDEAKRAAKL--AQGLGLRS-FNLD 163 (378)
T ss_pred C-CCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCe-EEEE
Confidence 2 124699999964 2 566777777756788999999999988764 45689999999996 46677542 2333
Q ss_pred EeCCCC-CCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCCC-----CCcHH----HHHHHHHHHHhCCCe
Q 011838 374 MLAGVN-DSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFT-----PTTDE----KMIEFRNILAGAGCT 433 (476)
Q Consensus 374 LI~GvN-Ds~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~~-----~ps~e----~i~~f~~~L~~~Gi~ 433 (476)
+|-|+. ++.+++.+..+++..++. +|.+.++.+.+++.+. .|+.+ .++...+.|.++|+.
T Consensus 164 li~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (378)
T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ 234 (378)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 443322 678899999999888864 8888888877765432 24433 334455778888975
No 71
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.22 E-value=1.3e-11 Score=120.66 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=154.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCC----CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRMG----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~g----~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
..+-+|.+..||++|.||.-.... ..+-++..|++.....+.. .++..+-+.| |||+...| +.+....
T Consensus 11 tyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~------qgv~knrLtg-geptIr~d-i~~i~~g 82 (323)
T KOG2876|consen 11 TYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAP------QGVDKNRLTG-GEPLIRQD-IVPIVAG 82 (323)
T ss_pred hhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhH------hhhhhhhhcC-CCCccccc-ccchhhh
Confidence 456788899999999999965432 2355788888775443322 3677888999 99999854 5565555
Q ss_pred HHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 367 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~ 367 (476)
+.+-.|+. .+.|+|||+. ..+-++-+.+.-.+.+|++....+..+.++. +-.+.++++.++. .......+
T Consensus 83 ~~~l~gLk----s~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r---r~g~v~V~~~iq~-a~~lgy~p 154 (323)
T KOG2876|consen 83 LSSLPGLK----SIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR---RKGFVKVWASIQL-AIELGYNP 154 (323)
T ss_pred hhcccchh----hhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh---hccHHHHHHHHhH-HhhhCCCC
Confidence 66666774 7899999984 3444555556556779999998888888874 3358899999996 23333355
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCc----HHHHHHHH------HHH----------
Q 011838 368 VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT----DEKMIEFR------NIL---------- 427 (476)
Q Consensus 368 V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps----~e~i~~f~------~~L---------- 427 (476)
+.++.++++|+|++ ++-+++.+-+..+..|..|.|.|..+..|...+ .+.+.-.. ..+
T Consensus 155 vkvn~v~~k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka 232 (323)
T KOG2876|consen 155 VKVNCVVMKGLNED--EVFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKA 232 (323)
T ss_pred cceeeEEEeccCCC--cccceeeecCCCCcceEEEEecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccc
Confidence 88999999999986 455666666666778888888888766543222 22222111 011
Q ss_pred -HhCCC--eEEEccCCCCccccccccccccCCC
Q 011838 428 -AGAGC--TVFLRLSRGDDQMAACGQLGNPGAI 457 (476)
Q Consensus 428 -~~~Gi--~v~vR~~~G~di~aaCGqL~~~~~~ 457 (476)
..-|. .|.+-.+.-.+.|++|..|+...++
T Consensus 233 ~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDg 265 (323)
T KOG2876|consen 233 YKIDGFQGQVSFITSMSEHFCGTCNRLRITADG 265 (323)
T ss_pred cccccccceEEeehhhHHHHHhhhhhheEeccC
Confidence 11122 3566677778889999998887665
No 72
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.22 E-value=1.3e-09 Score=118.07 Aligned_cols=179 Identities=11% Similarity=0.169 Sum_probs=130.8
Q ss_pred EEEEecCCCCCCCCCCCCCCCC-CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhc
Q 011838 216 VCVSSQVGCAMNCQFCYTGRMG-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 294 (476)
Q Consensus 216 lCVSsq~GCnl~C~FC~tg~~g-~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~ 294 (476)
..+.+..||+++|.||..+... ..|..+++.+++++....+. .++..+.|.+ .+|+.|.+.+.++++.+.+..
T Consensus 195 ~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~-----~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 195 AVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRT-----HGVGFFILAD-EEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred eeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHH-----cCCCEEEEEe-cccccCHHHHHHHHHHHHhcC
Confidence 3466789999999999987643 23667999999999876543 2688899998 999999888888888775432
Q ss_pred CCCCCCCeEEEEeCC--c--hHHH-HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Q 011838 295 GLHFSPRKVTVSTSG--L--VPQL-KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 369 (476)
Q Consensus 295 Gl~i~~r~ItVsTNG--~--~p~i-~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ 369 (476)
.++ .+..++|.. + .+++ +.+.+.+-..+.+.+.+.+++..+.+ ++..+.+++.++++. .++.|..+.
T Consensus 269 ~l~---i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~---~K~~t~~~~~~ai~~--l~~~Gi~~~ 340 (497)
T TIGR02026 269 PIS---VTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHF---RKGTTTSTNKEAIRL--LRQHNILSE 340 (497)
T ss_pred CCC---eEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHh---cCCCCHHHHHHHHHH--HHHCCCcEE
Confidence 243 123444443 2 2444 44445565577899999999887654 456688999999996 577888776
Q ss_pred EEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q 011838 370 FEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS 410 (476)
Q Consensus 370 ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~ 410 (476)
..+++ +|| ++.+++++..+++..++. .+++..+.|.+|+
T Consensus 341 ~~~I~G~P~--et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 341 AQFITGFEN--ETDETFEETYRQLLDWDPDQANWLMYTPWPFT 381 (497)
T ss_pred EEEEEECCC--CCHHHHHHHHHHHHHcCCCceEEEEecCCCCc
Confidence 65544 244 889999999999998764 6777778888776
No 73
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.22 E-value=2.4e-09 Score=113.15 Aligned_cols=181 Identities=19% Similarity=0.344 Sum_probs=124.7
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC------CHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH------NVENVIK 285 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL------n~d~V~~ 285 (476)
+....|.++.|||++|.||..+.. |..|..++++|++++....+ .+++.|+|.| .+-.. +...+.+
T Consensus 137 ~~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~------~g~~ei~l~~-~~~~~y~~d~~~~~~l~~ 209 (414)
T TIGR01579 137 HTRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA------KGYKEIVLTG-VNLGSYGDDLKNGTSLAK 209 (414)
T ss_pred CeEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH------CCCceEEEee-EccchhccCCCCCCcHHH
Confidence 344556678999999999997653 34578899999999987543 3688999987 33222 1234666
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCC---chHHHHHHHh-cC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLN-ES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTNG---~~p~i~~L~~-~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+..|+. .+.+.+.- +.+++.+++. .+ -..|.+.+.+.+++..+. .+++++.+++.++++.
T Consensus 210 Ll~~l~~~~~~~----~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~---m~R~~~~~~~~~~v~~- 281 (414)
T TIGR01579 210 LLEQILQIPGIK----RIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKR---MRRKYTRDDFLKLVNK- 281 (414)
T ss_pred HHHHHhcCCCCc----EEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHh---cCCCCCHHHHHHHHHH-
Confidence 676665433442 35554321 2355555554 33 235789999999998765 3567889999999997
Q ss_pred HHhh--CCCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFK--NNYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~--~g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++ .+..+...+++ +|| ++++++.+..+++..++. .+++.+|.|.+|+.
T Consensus 282 l-~~~~~gi~i~~~~IvG~Pg--ET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 334 (414)
T TIGR01579 282 L-RSVRPDYAFGTDIIVGFPG--ESEEDFQETLRMVKEIEFSHLHIFPYSARPGTP 334 (414)
T ss_pred H-HHhCCCCeeeeeEEEECCC--CCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCc
Confidence 3 44 45544443332 355 899999999999998864 78889999998874
No 74
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.22 E-value=2.2e-11 Score=106.09 Aligned_cols=83 Identities=29% Similarity=0.546 Sum_probs=45.3
Q ss_pred cCCCCCCCCCCCCCC---CCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc--CCHHHHHHHHHHHHHhcC
Q 011838 221 QVGCAMNCQFCYTGR---MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVHEQG 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~---~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL--Ln~d~V~~ai~~l~~~~G 295 (476)
+.+||++|.||++.. ......++.+++.+.+..... .......|+|+| |||| ++++.+.++++.+. +.+
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~-~~~ 78 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKE----KGFRPSTVVFTG-GEPLLYLNPEDLIELIEYLK-ERG 78 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHH----TT----EEEEES-SSGGGSTTHHHHHHHHCTST-T--
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHh----cCCceEEEEEEC-CCCccccCHHHHHHHHHHHH-hhC
Confidence 689999999999854 223355666666666653322 112346799999 9999 66778888888653 444
Q ss_pred CCCCCCeEEEEeCCchH
Q 011838 296 LHFSPRKVTVSTSGLVP 312 (476)
Q Consensus 296 l~i~~r~ItVsTNG~~p 312 (476)
....+.+.|||+.+
T Consensus 79 ---~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 79 ---PEIKIRIETNGTLP 92 (119)
T ss_dssp ------EEEEEE-STTH
T ss_pred ---CCceEEEEeCCeec
Confidence 11359999999975
No 75
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.21 E-value=6.5e-10 Score=114.86 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=129.0
Q ss_pred EecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCCHHHHHHHHHHHHHhc
Q 011838 219 SSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHNVENVIKAANIMVHEQ 294 (476)
Q Consensus 219 Ssq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn~d~V~~ai~~l~~~~ 294 (476)
..+.+|+.+|.||...... ....++++||++++..+.+ .+++.|.|+| | +|.+..+.+.++++.+.+..
T Consensus 44 ~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~------~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~~ 116 (343)
T TIGR03551 44 NFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK------AGATEVCIQG-GIHPDLDGDFYLDILRAVKEEV 116 (343)
T ss_pred ccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHHC
Confidence 3479999999999965421 1134899999999987654 3688999998 6 78788888899999876542
Q ss_pred -CCCCCCCeEEEE----------eCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 295 -GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 295 -Gl~i~~r~ItVs----------TNG~~--p~i~~L~~~~~~~La-ISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
+++ +... ++|+. +.+++|.+.+-..+. .+.+..+++.++++.|. +.+.++.+++++.
T Consensus 117 ~~i~-----~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~~~~i~~-- 187 (343)
T TIGR03551 117 PGMH-----IHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPD--KLSTAEWIEIIKT-- 187 (343)
T ss_pred CCce-----EEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCC--CCCHHHHHHHHHH--
Confidence 332 4432 56764 467888887722222 34566678888888863 3467888999996
Q ss_pred HhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe----EEEEecc--CCCCCCC-------CCCcHHHHHHHHHHH
Q 011838 361 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK----INLISFN--PHCGSQF-------TPTTDEKMIEFRNIL 427 (476)
Q Consensus 361 ~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~----VnLIp~n--P~~~~~~-------~~ps~e~i~~f~~~L 427 (476)
+.+.|.++.. .+|-|..++.++..+.+.++++++.. -.++|+| |. ++++ ++.+.++..+.....
T Consensus 188 a~~~Gi~v~s--~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~-gT~l~~~~~~~~~~~~~~~lr~iAv~ 264 (343)
T TIGR03551 188 AHKLGIPTTA--TIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHY-NAPLYLKGMARPGPTGREDLKVHAIA 264 (343)
T ss_pred HHHcCCcccc--eEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCC-CCccccccCCCCCCCHHHHHHHHHHH
Confidence 5778876643 44556778999999999999988642 2345654 32 3332 233566655555444
No 76
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.21 E-value=2.9e-09 Score=110.39 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=133.4
Q ss_pred CCCCCCCCCCCCCCCCccC---CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc-CCHHHHHHHHHHHHHhcCCCC
Q 011838 223 GCAMNCQFCYTGRMGLKRH---LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGLHF 298 (476)
Q Consensus 223 GCnl~C~FC~tg~~g~~r~---lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL-Ln~d~V~~ai~~l~~~~Gl~i 298 (476)
=|+.+|.||........+. -..+.+++++....+.+. ..++..|.|-| |+|+ ++.+.+.++++.+.+. +.
T Consensus 9 FC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~--~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~~--~~- 82 (350)
T PRK08446 9 FCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFT--DEKIESVFIGG-GTPSTVSAKFYEPIFEIISPY--LS- 82 (350)
T ss_pred CccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhcc--CCceeEEEECC-CccccCCHHHHHHHHHHHHHh--cC-
Confidence 3999999998654321111 134556666654333221 24687777766 9997 5777777777766443 21
Q ss_pred CCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEEE
Q 011838 299 SPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 374 (476)
Q Consensus 299 ~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyvL 374 (476)
....+++.+|.. . +.++.+.+.+-..|.|++.+.+++..+.+ ++.++.+++.++++. +++.|.. |.+..+.
T Consensus 83 ~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~~~~~~ai~~--lr~~g~~~v~iDli~ 157 (350)
T PRK08446 83 KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQKQIIKAIEN--AKKAGFENISIDLIY 157 (350)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCEEEEEeec
Confidence 113599999974 2 45666666665578899999999887654 456789999999996 4666754 4444333
Q ss_pred -eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC------CCCcHHHHHHHHHHHHhCCCe
Q 011838 375 -LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF------TPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 375 -I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~------~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
+|| ++.+++.+..+++..++. +|.+.++.+.+++.+ .+...+....+.+.|.++|+.
T Consensus 158 GlPg--qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 222 (350)
T PRK08446 158 DTPL--DNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK 222 (350)
T ss_pred CCCC--CCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc
Confidence 366 668899998899888864 888888887776643 123345566778889999985
No 77
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.21 E-value=3.5e-09 Score=113.33 Aligned_cols=202 Identities=10% Similarity=0.155 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCCC-CccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011838 223 GCAMNCQFCYTGRMG-LKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 223 GCnl~C~FC~tg~~g-~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~ 297 (476)
-|+.+|.||...... ..+.. ..+.+++++....+.+. ...++..|.|.| |+|++ +.+.+.++++.+.+..++.
T Consensus 58 FC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-~~~~v~~i~~gG-GtPs~l~~~~l~~ll~~l~~~~~~~ 135 (453)
T PRK09249 58 FCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLG-PGRPVSQLHWGG-GTPTFLSPEQLRRLMALLREHFNFA 135 (453)
T ss_pred CccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhC-CCCceEEEEECC-cccccCCHHHHHHHHHHHHHhCCCC
Confidence 399999999865431 11111 23556666654443332 124688898888 99996 6788888888776554432
Q ss_pred CCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-eEEEEEE
Q 011838 298 FSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVLFEYV 373 (476)
Q Consensus 298 i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~-~V~ieyv 373 (476)
....+++.||+. . +.++.+.+.+-..|.|++++.+++..+.+. +..+.++++++++. +++.|. .+.+..+
T Consensus 136 -~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai~~--l~~~G~~~v~~dli 209 (453)
T PRK09249 136 -PDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN---RIQPFEFTFALVEA--ARELGFTSINIDLI 209 (453)
T ss_pred -CCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCcEEEEEE
Confidence 124699999974 3 455666666655788999999999887664 45678999999986 466665 4544433
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC--------CCCCCcHHHH----HHHHHHHHhCCCeE
Q 011838 374 M-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS--------QFTPTTDEKM----IEFRNILAGAGCTV 434 (476)
Q Consensus 374 L-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~--------~~~~ps~e~i----~~f~~~L~~~Gi~v 434 (476)
+ +|| ++.+++.+..+++..++. +|.+.++.+.+.. ....|+.++. ....+.|.+.|+.-
T Consensus 210 ~GlPg--qt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 282 (453)
T PRK09249 210 YGLPK--QTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQY 282 (453)
T ss_pred ccCCC--CCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 2 355 678899999999988864 7888776533221 1223555543 34456788889863
No 78
>PRK15108 biotin synthase; Provisional
Probab=99.21 E-value=3.2e-09 Score=109.96 Aligned_cols=185 Identities=16% Similarity=0.228 Sum_probs=130.8
Q ss_pred cCCCCCCCCCCCCCCC---CC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-ccc-CCHHHHHHHHHHHHHh
Q 011838 221 QVGCAMNCQFCYTGRM---GL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPL-HNVENVIKAANIMVHE 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPL-Ln~d~V~~ai~~l~~~ 293 (476)
+.+|+.+|.||..... +. .+.++++||++.+..+.+ .+++.|.+.+.| +|. ..++.+.++++.++ +
T Consensus 50 Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~------~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik-~ 122 (345)
T PRK15108 50 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA------AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-A 122 (345)
T ss_pred CCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH------cCCCEEEEEecCCCCCcchHHHHHHHHHHHH-h
Confidence 7999999999997642 22 234899999999876543 367777664423 664 45788889988765 5
Q ss_pred cCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.++. +. .|+|.. +.+++|.+.+-..+.++|++ +++.+.++.+. .++++.++.++. ..+.|.++ .
T Consensus 123 ~~i~-----v~-~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~---~~~~~rl~~i~~--a~~~G~~v--~ 188 (345)
T PRK15108 123 MGLE-----TC-MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITT---RTYQERLDTLEK--VRDAGIKV--C 188 (345)
T ss_pred CCCE-----EE-EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCC---CCHHHHHHHHHH--HHHcCCce--e
Confidence 5653 54 579975 56788888875456799999 79999988753 368999999997 46677655 4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---eEEEEeccCCCCCCCC---CCcHHHHHHHHHH
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIPC---KINLISFNPHCGSQFT---PTTDEKMIEFRNI 426 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~~---~VnLIp~nP~~~~~~~---~ps~e~i~~f~~~ 426 (476)
..+|=|..++.+|..+++..++.++. .|-+.+++|.+++++. +.+..+..+....
T Consensus 189 sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi 249 (345)
T PRK15108 189 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAV 249 (345)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 44566778999999999999998843 3444456787777543 2344544444433
No 79
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.20 E-value=1.5e-09 Score=115.27 Aligned_cols=184 Identities=17% Similarity=0.352 Sum_probs=127.1
Q ss_pred ceEEEEEecCCCCCCCCCCCCCC-CCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCCHHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKA 286 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn~d~V~~a 286 (476)
+....+.++.|||++|.||..+. .|..|..+++++++++....+ .++..|+|.| +|+.+.+...+.++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~------~g~~ei~l~~~~~~~yg~d~~~~~~l~~L 211 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVS------KGVKEIVLLGQNVGAYGKDLKGETNLADL 211 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHH------CCCceEEEEeeccccccCCCCCCcCHHHH
Confidence 44566777899999999999865 334578899999999987643 3677888886 34444322345666
Q ss_pred HHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 287 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 287 i~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
++.+.+..|+. .+.+.+. .+.+++.+++.+. -..+.+.+.+.+++..+. .++.++.+++.+.++.
T Consensus 212 l~~l~~~~g~~----~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~---m~R~~~~~~~~~~i~~-- 282 (429)
T TIGR00089 212 LRELSKIDGIE----RIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKR---MNRKYTREEYLDIVEK-- 282 (429)
T ss_pred HHHHhcCCCCC----EEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHh---CCCCCCHHHHHHHHHH--
Confidence 66554333442 4555442 2345555555432 235779999999998765 3467889999999986
Q ss_pred HhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 361 HFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 361 ~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
.++.+..+.+..-+|-|+ +++++++.+..+++..++. .+++.+|.|.+++.
T Consensus 283 lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~ 335 (429)
T TIGR00089 283 IRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTP 335 (429)
T ss_pred HHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCc
Confidence 355554445554454443 5899999999999998874 78888999998875
No 80
>PLN02389 biotin synthase
Probab=99.19 E-value=3.9e-09 Score=110.50 Aligned_cols=186 Identities=16% Similarity=0.266 Sum_probs=132.9
Q ss_pred cCCCCCCCCCCCCCCC---CC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe-----cCCcccCCHHHHHHHHHHH
Q 011838 221 QVGCAMNCQFCYTGRM---GL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM-----GMGEPLHNVENVIKAANIM 290 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~-----GmGEPLLn~d~V~~ai~~l 290 (476)
+.+|+.+|.||+.... +. .+.++++||++.+..+.+ .+++.|.+. +.|||.. ++.+.++++.+
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~------~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~i 162 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE------AGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEI 162 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH------cCCCEEEEEecccCCCCChhH-HHHHHHHHHHH
Confidence 7999999999987542 22 235899999999987643 255565542 2366664 68899999977
Q ss_pred HHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 291 VHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 291 ~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
+ +.++. ++ .|+|+. +.+++|.+.+-..+.++|++. ++.+.++.+. .++++.++.++. ..+.|.++
T Consensus 163 k-~~~l~-----i~-~s~G~l~~E~l~~LkeAGld~~~~~LeTs-~~~y~~i~~~---~s~e~rl~ti~~--a~~~Gi~v 229 (379)
T PLN02389 163 R-GMGME-----VC-CTLGMLEKEQAAQLKEAGLTAYNHNLDTS-REYYPNVITT---RSYDDRLETLEA--VREAGISV 229 (379)
T ss_pred h-cCCcE-----EE-ECCCCCCHHHHHHHHHcCCCEEEeeecCC-hHHhCCcCCC---CCHHHHHHHHHH--HHHcCCeE
Confidence 5 55654 44 588975 567888888744567899994 7788877753 368999999996 56777655
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC---eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHH
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC---KINLISFNPHCGSQF---TPTTDEKMIEFRNILA 428 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~---~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~ 428 (476)
...+|-|.+++.+|..+.+.+++.++. .|.+.+++|.+|+++ ++++.++..+.....+
T Consensus 230 --~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 230 --CSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred --eEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 445777889999999999999988742 456666788888753 4566666555554443
No 81
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.18 E-value=6.6e-09 Score=108.36 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCCCCCCCccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~ 297 (476)
.-|+.+|.||........... .++.+++++... . ...++..|.|.| |+|++ +.+.+..+++.+. ..++.
T Consensus 11 PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~---~--~~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~-~~~~~ 83 (374)
T PRK05799 11 PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNS---T--KNKKIKSIFIGG-GTPTYLSLEALEILKETIK-KLNKK 83 (374)
T ss_pred CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhh---c--CCCceeEEEECC-CcccCCCHHHHHHHHHHHH-hCCCC
Confidence 349999999997653211111 244455555321 1 123577777777 99995 6666655656553 33332
Q ss_pred CCCCeEEEEeCCc--hH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEE
Q 011838 298 FSPRKVTVSTSGL--VP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYV 373 (476)
Q Consensus 298 i~~r~ItVsTNG~--~p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyv 373 (476)
....+++.||.. .+ .++.+.+.+-..+.|++.+.+++..+.+ ++.++.++++++++. +.+.|.. |.+.
T Consensus 84 -~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~~~~~~ai~~--l~~~g~~~v~~d-- 155 (374)
T PRK05799 84 -EDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTFEEFLENYKL--ARKLGFNNINVD-- 155 (374)
T ss_pred -CCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEE--
Confidence 123589999973 34 4556666665578899999999988765 456789999999996 4666654 4443
Q ss_pred EeCCC-CCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011838 374 MLAGV-NDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 374 LI~Gv-NDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~---------~~~ps~e~----i~~f~~~L~~~Gi~ 433 (476)
+|-|+ +++.+++.+..+++..++ .+|.+.++.+.+++. +..|+.++ .+...+.|.++|+.
T Consensus 156 li~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 156 LMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred eecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 34333 477899999999998886 478888887776653 33455444 33445778888975
No 82
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.16 E-value=1.4e-08 Score=106.03 Aligned_cols=199 Identities=12% Similarity=0.169 Sum_probs=133.5
Q ss_pred CCCCCCCCCCCCCCCCc---cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc-CCHHHHHHHHHHHHHhcCCCC
Q 011838 223 GCAMNCQFCYTGRMGLK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGLHF 298 (476)
Q Consensus 223 GCnl~C~FC~tg~~g~~---r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL-Ln~d~V~~ai~~l~~~~Gl~i 298 (476)
-|+.+|.||.-...... ..-.++.+++++..+.. . ...+++.|.|.| |+|+ ++.+.+.++++.+.+..++.
T Consensus 10 fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~-~--~~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~~~~~~- 84 (377)
T PRK08599 10 FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAI-R--PFDKLKTIYIGG-GTPTALSAEQLERLLTAIHRNLPLS- 84 (377)
T ss_pred CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhh-c--CCCceeEEEeCC-CCcccCCHHHHHHHHHHHHHhCCCC-
Confidence 39999999986542111 12245667777744322 1 124688887777 9999 47788888888776654442
Q ss_pred CCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEEE
Q 011838 299 SPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 374 (476)
Q Consensus 299 ~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyvL 374 (476)
....+++.+|.- . +.++.+.+.+-..+.|++.+.+++..+.+ ++.++.+++.++++. .++.|.+ +.+..++
T Consensus 85 ~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l---~r~~~~~~~~~~i~~--l~~~g~~~v~~dli~ 159 (377)
T PRK08599 85 GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKI---GRTHNEEDVYEAIAN--AKKAGFDNISIDLIY 159 (377)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEeeec
Confidence 113689999963 3 45566666665578899999999998865 356789999999996 4666654 4443322
Q ss_pred -eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011838 375 -LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 375 -I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~---------~~~ps~e~----i~~f~~~L~~~Gi~ 433 (476)
+|| ++.+++.+.++++..++. +|.+.++.|.+++. +..|+.+. .+.+.+.|.++|+.
T Consensus 160 GlPg--qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 160 ALPG--QTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred CCCC--CCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 355 778999999999988864 67777776666543 22344333 34456788888986
No 83
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.16 E-value=6.9e-09 Score=110.74 Aligned_cols=183 Identities=14% Similarity=0.291 Sum_probs=125.1
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----C-CcccCCHHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----M-GEPLHNVENVI 284 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----m-GEPLLn~d~V~ 284 (476)
++..+.+.++.|||.+|.||..+.. |..+..+++++++++....+ .++..|+|.| + |++-.. ..+.
T Consensus 136 ~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~------~G~keI~l~g~~~~~yG~d~~~~-~~~~ 208 (440)
T PRK14334 136 GKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKA------AGVQEVTLLGQNVNSYGVDQPGF-PSFA 208 (440)
T ss_pred CCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHH------CCCeEEEEEeccccccccCCCCc-CCHH
Confidence 5678888889999999999998753 33456799999999987643 3677788865 1 343221 1234
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEe-CC--chHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011838 285 KAANIMVHEQGLHFSPRKVTVST-SG--LVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 358 (476)
Q Consensus 285 ~ai~~l~~~~Gl~i~~r~ItVsT-NG--~~p~i~~L~~~-~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~ 358 (476)
++++.+. ..|+. ++.+.+ +. +.+++.+++.. + -..+.|++.+.+++..+. .++.++.++++++++.
T Consensus 209 ~Ll~~l~-~~~i~----~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~---m~R~~~~~~~~~~v~~ 280 (440)
T PRK14334 209 ELLRLVG-ASGIP----RVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRR---MAREYRREKYLERIAE 280 (440)
T ss_pred HHHHHHH-hcCCc----EEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHH---hCCCCCHHHHHHHHHH
Confidence 5555443 33442 455544 22 34555555443 2 246789999999998654 3567889999999997
Q ss_pred HHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 359 ELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 359 ~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
.++.+..+.+..-+|-|+ +++++++.+..+++..++. ++++.+|.|.+++.
T Consensus 281 --lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~ 333 (440)
T PRK14334 281 --IREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTP 333 (440)
T ss_pred --HHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCCh
Confidence 355665555555444332 3789999999999998864 78888999988874
No 84
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.16 E-value=1.9e-08 Score=107.83 Aligned_cols=200 Identities=12% Similarity=0.181 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCCC-CccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCC
Q 011838 224 CAMNCQFCYTGRMG-LKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHF 298 (476)
Q Consensus 224 Cnl~C~FC~tg~~g-~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~i 298 (476)
|+.+|.||...... ..... ..+.+++++....+.+.. ..++..|.|-| |+|++ +.+.+.++++.+.+..++.
T Consensus 60 C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~-~~~v~~i~fgG-GTPs~l~~~~l~~ll~~i~~~~~~~- 136 (453)
T PRK13347 60 CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQ-RRRVSQLHWGG-GTPTILNPDQFERLMAALRDAFDFA- 136 (453)
T ss_pred ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCC-CCeEEEEEEcC-cccccCCHHHHHHHHHHHHHhCCCC-
Confidence 99999999865432 11111 134555665544333211 23688898888 99994 7788888888876654432
Q ss_pred CCCeEEEEeCCc--hH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEEE
Q 011838 299 SPRKVTVSTSGL--VP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 374 (476)
Q Consensus 299 ~~r~ItVsTNG~--~p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyvL 374 (476)
....+++.||.. .+ .++.|.+.+-..+.|++.+.+++.++.+. +.++.+++.++++. +++.|.. |.+..+.
T Consensus 137 ~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~---R~~~~~~~~~ai~~--lr~~G~~~v~~dli~ 211 (453)
T PRK13347 137 PEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAIN---RIQPEEMVARAVEL--LRAAGFESINFDLIY 211 (453)
T ss_pred CCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC---CCCCHHHHHHHHHH--HHhcCCCcEEEeEEE
Confidence 123589999974 34 45555555655788999999999987663 45689999999996 4666754 5544333
Q ss_pred -eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCC--------CCCCCCcHHH----HHHHHHHHHhCCCe
Q 011838 375 -LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG--------SQFTPTTDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 375 -I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~--------~~~~~ps~e~----i~~f~~~L~~~Gi~ 433 (476)
+|| ++.+++.+..+++..++. +|.+.++...+. .....|+.++ ++.+.+.|.++|+.
T Consensus 212 GlPg--qt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 212 GLPH--QTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred eCCC--CCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE
Confidence 466 678999999999988864 777776642221 1233344433 33455788889986
No 85
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.15 E-value=1.2e-08 Score=109.30 Aligned_cols=202 Identities=11% Similarity=0.204 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCCCCCC-CccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMG-LKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g-~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.-|+.+|.||...... ..... ..+.+++++....+.+. ...++..|.|.| |+|++ +.+.+.++++.+.+...+
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-~~~~v~~I~fgG-GtP~~l~~~~l~~ll~~i~~~~~~ 134 (455)
T TIGR00538 57 PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFD-GNRHVSQLHWGG-GTPTYLSPEQISRLMKLIRENFPF 134 (455)
T ss_pred CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcC-CCCceEEEEECC-CCcCCCCHHHHHHHHHHHHHhCCC
Confidence 4499999999976532 11111 35666777665443332 124788898888 99985 788888888877654332
Q ss_pred CCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEE
Q 011838 297 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEY 372 (476)
Q Consensus 297 ~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~iey 372 (476)
. ....+++.||+. . +.++.|.+.+-..|.|++.+.+++..+.+. +.++.+++.++++. +++.|.. +.+..
T Consensus 135 ~-~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~---r~~~~~~~~~ai~~--l~~~G~~~v~~dl 208 (455)
T TIGR00538 135 N-ADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN---RIQPEEMIFELMNH--AREAGFTSINIDL 208 (455)
T ss_pred C-CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC---CCCCHHHHHHHHHH--HHhcCCCcEEEeE
Confidence 1 123589999974 2 456666666656788999999999988664 44678999999996 4666754 44443
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCC--------CCCCCCcHHHH----HHHHHHHHhCCCe
Q 011838 373 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG--------SQFTPTTDEKM----IEFRNILAGAGCT 433 (476)
Q Consensus 373 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~--------~~~~~ps~e~i----~~f~~~L~~~Gi~ 433 (476)
+. +|| ++.+++.+.++++..++. +|.+.++.+.+. .....|+.++. ..+.+.|.+.|+.
T Consensus 209 i~GlPg--qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 209 IYGLPK--QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 32 466 678999999999998864 777777643221 12234554443 3445667788875
No 86
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.15 E-value=1.7e-08 Score=105.47 Aligned_cols=202 Identities=15% Similarity=0.218 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCcc---CCC----HHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhc
Q 011838 223 GCAMNCQFCYTGRMGLKR---HLT----AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ 294 (476)
Q Consensus 223 GCnl~C~FC~tg~~g~~r---~lt----~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~ 294 (476)
-|+.+|.||........+ .-. .+.+.+++....+.+......+..|.|-| |.|++ +.+.+.++++.+.+..
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ll~~i~~~~ 89 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLARVLDAVRDTF 89 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHHHHHHHHHhC
Confidence 499999999864421111 123 33444444433333210123577776666 99985 6777888888776655
Q ss_pred CCCCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEE
Q 011838 295 GLHFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLF 370 (476)
Q Consensus 295 Gl~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~i 370 (476)
++. ....+++.+|.- . +.++.+.+.+-..+.+.+.+.+++..+.+ ++.++.++++++++. +++.|.. +.+
T Consensus 90 ~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~s~~~~~~a~~~--l~~~g~~~v~~ 163 (375)
T PRK05628 90 GLA-PGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL---DRTHTPGRAVAAARE--ARAAGFEHVNL 163 (375)
T ss_pred CCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEE
Confidence 553 223588888863 3 45556666665578899999999987754 456789999999996 4666766 666
Q ss_pred EEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011838 371 EYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 371 eyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~---------~~~ps~e~----i~~f~~~L~~~Gi~ 433 (476)
..++ +|| ++.+++.+..+++..++. ++.+.++.+.+++. +..|+.+. .....+.|++.|+.
T Consensus 164 dli~GlPg--qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 164 DLIYGTPG--ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred EEeccCCC--CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 5444 466 678899999999988864 78887777665542 33455433 33445777888875
No 87
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.14 E-value=7.4e-09 Score=110.79 Aligned_cols=182 Identities=14% Similarity=0.270 Sum_probs=127.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCH---HHHHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV---ENVIKAANI 289 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~---d~V~~ai~~ 289 (476)
....+.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| ..-..+. ..+.++++.
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~------~G~kei~l~~-~~~~~y~~~~~~l~~Ll~~ 226 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE------KGIRQVTLLG-QNVNSYKEQSTDFAGLIQM 226 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH------CCCeEEEEec-ccCCcccCCcccHHHHHHH
Confidence 45567778999999999998753 34578899999999987643 3789999988 4444431 135555555
Q ss_pred HHHhcCCCCCCCeEEEEe---CCchHHHHHHHh-cCC--eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011838 290 MVHEQGLHFSPRKVTVST---SGLVPQLKQFLN-ESN--CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 363 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsT---NG~~p~i~~L~~-~~~--~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~ 363 (476)
+.+..|+ .++.+++ ..+.+++.+++. .+. ..+.+.+.+.+++..+++ +++++.++..++++. + ++
T Consensus 227 l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m---~R~~t~~~~~~~i~~-l-r~ 297 (449)
T PRK14332 227 LLDETTI----ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEM---KRSYSKEEFLDVVKE-I-RN 297 (449)
T ss_pred HhcCCCc----ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhh---CCCCCHHHHHHHHHH-H-HH
Confidence 5443343 2466655 234455555554 332 367899999999987654 467889999999986 3 44
Q ss_pred CCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 364 NNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 364 ~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
....+.+..-+|-|+ ++++++++++.++++.++. .+++.+|.|.+|+.
T Consensus 298 ~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~ 347 (449)
T PRK14332 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTM 347 (449)
T ss_pred hCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCCh
Confidence 433455555555443 4889999999999999874 78899999998864
No 88
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.14 E-value=2.3e-09 Score=110.29 Aligned_cols=192 Identities=17% Similarity=0.257 Sum_probs=122.5
Q ss_pred EEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc-cCCH------------HHH
Q 011838 218 VSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP-LHNV------------ENV 283 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP-LLn~------------d~V 283 (476)
+..+.+|+.+|.||..... +..+.++++|+++++..+.+ .+++.|.|.| ||+ .+.+ ..+
T Consensus 16 i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~ 88 (336)
T PRK06245 16 IPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGAD------AGCTEALFTF-GEVPDESYERIKEQLAEMGYSSI 88 (336)
T ss_pred eeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCccchhhhhhhhhhhhHHHH
Confidence 4458999999999986542 33357999999999988654 3788899999 998 4442 234
Q ss_pred HHHHHHHHH---hcCCCCCCCeEEEEeCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011838 284 IKAANIMVH---EQGLHFSPRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 357 (476)
Q Consensus 284 ~~ai~~l~~---~~Gl~i~~r~ItVsTNG--~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~ 357 (476)
.+.++.+.+ ..|+ ...+|. +. +.+..|.+.+ ..+.+.+++.++...+.+....+....++.++.++
T Consensus 89 ~~~i~~i~~~~~~~g~-------~~~~~~~~lt~e~i~~Lk~ag-~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~ 160 (336)
T PRK06245 89 LEYLYDLCELALEEGL-------LPHTNAGILTREEMEKLKEVN-ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIE 160 (336)
T ss_pred HHHHHHHHHHHhhcCC-------CccccCCCCCHHHHHHHHHhC-CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHH
Confidence 444443332 2333 223443 23 4555555543 33457778888888765532222335778889988
Q ss_pred HHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC------CeEEEEeccCCCCCC---CCCCcHHHHHHHHHHHH
Q 011838 358 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP------CKINLISFNPHCGSQ---FTPTTDEKMIEFRNILA 428 (476)
Q Consensus 358 ~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~------~~VnLIp~nP~~~~~---~~~ps~e~i~~f~~~L~ 428 (476)
. ..+.|.++. ..++=|.+++.++..+...+++.+. ..+.+.+|.|.+++. ...++.+++.++....+
T Consensus 161 ~--a~~~Gi~~~--~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 161 N--AGKLKIPFT--TGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred H--HHHcCCcee--eeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHH
Confidence 6 455676543 3345566788888888766666553 246677788887753 34567777666555443
No 89
>PRK12928 lipoyl synthase; Provisional
Probab=99.14 E-value=1e-08 Score=103.89 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=136.8
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc----ccCCHHHHHHHHHHHHHhcCC
Q 011838 221 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQGL 296 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE----PLLn~d~V~~ai~~l~~~~Gl 296 (476)
+.||+.+|.||..+. +....++++|+++.+..+.+ .+++.|+++| |. |-...+.+.++++.+.+...
T Consensus 67 s~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~------~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik~~~p- 137 (290)
T PRK12928 67 GSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAA------LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIRARNP- 137 (290)
T ss_pred cccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHH------CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHHhcCC-
Confidence 799999999999876 44556899999988886643 3688999999 53 33344567777776654322
Q ss_pred CCCCCeEEEEeCCc----hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEE
Q 011838 297 HFSPRKVTVSTSGL----VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 372 (476)
Q Consensus 297 ~i~~r~ItVsTNG~----~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~iey 372 (476)
..+|.+.|-.. .+.+.++.+.+...+..-+.+ .+++++++.+ .++.++.++.++. ..+.+..+.+..
T Consensus 138 ---~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r---~~t~e~~le~l~~--ak~~gp~i~~~s 208 (290)
T PRK12928 138 ---GTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRR---GADYQRSLDLLAR--AKELAPDIPTKS 208 (290)
T ss_pred ---CCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCC---CCCHHHHHHHHHH--HHHhCCCceecc
Confidence 12466655433 356777777763222222444 4778877664 4788999999986 466665567777
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEecc-CCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFN-PHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~n-P~~~~-~-~~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
.+|=|..++.+++.+..++++++++ .+++.+|- |.... + .+-.++++.++++++..+.|+.
T Consensus 209 ~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~ 273 (290)
T PRK12928 209 GLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFS 273 (290)
T ss_pred cEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCc
Confidence 7777889999999999999999986 77888874 43321 1 1224568889999999999986
No 90
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.5e-10 Score=112.12 Aligned_cols=85 Identities=27% Similarity=0.490 Sum_probs=62.7
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCCC------CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRMG------LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 285 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~g------~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ 285 (476)
||.++.|+ +.|||++|.||+|.... ..+.++.+||++++.... .+...|+|+| |||+++ +++.+
T Consensus 21 Gr~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-------~~~~~V~lTG-GEP~~~-~~l~~ 90 (212)
T COG0602 21 GRPSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-------YKARGVSLTG-GEPLLQ-PNLLE 90 (212)
T ss_pred cceeEEEE-cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-------CCcceEEEeC-CcCCCc-ccHHH
Confidence 44555555 68999999999986321 235689999999987531 2345899999 999776 45777
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCchH
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTSGLVP 312 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTNG~~p 312 (476)
+++.+ +..|+. +.+.|||..+
T Consensus 91 Ll~~l-~~~g~~-----~~lETngti~ 111 (212)
T COG0602 91 LLELL-KRLGFR-----IALETNGTIP 111 (212)
T ss_pred HHHHH-HhCCce-----EEecCCCCcc
Confidence 77765 455886 9999999863
No 91
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.13 E-value=5.1e-09 Score=106.70 Aligned_cols=193 Identities=18% Similarity=0.199 Sum_probs=127.8
Q ss_pred EEecCCCCCCCCCCCCCCCCC---ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCCHHHHHHHHHHHHHh
Q 011838 218 VSSQVGCAMNCQFCYTGRMGL---KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHNVENVIKAANIMVHE 293 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg~~g~---~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn~d~V~~ai~~l~~~ 293 (476)
|..+.||+.+|.||.-..... .+.++++||++.+..+.+ .+++.|.|.| | .|..+.+.+.++++.+.+.
T Consensus 9 i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~------~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 9 INFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA------KGATEVCIQG-GLNPQLDIEYYEELFRAIKQE 81 (309)
T ss_pred ecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHH
Confidence 445899999999998764221 246899999999987643 3688999998 7 5777888889999987654
Q ss_pred cCCCCCCCeEEEE----------eCCch-H-HHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 294 QGLHFSPRKVTVS----------TSGLV-P-QLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 294 ~Gl~i~~r~ItVs----------TNG~~-p-~i~~L~~~~~~~L-aISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
. .. .++... +.|+. + .+++|.+.+-..+ .++....+++.++++.|. +.+.++.+++++.
T Consensus 82 ~-~~---i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~--~~t~~~~l~~i~~-- 153 (309)
T TIGR00423 82 F-PD---VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN--KLSSDEWLEVIKT-- 153 (309)
T ss_pred C-CC---ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC--CCCHHHHHHHHHH--
Confidence 2 22 123221 45654 3 4677777663222 357777889999988763 4467888899986
Q ss_pred HhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe----EEEEec--cCCCCC-----CCCCCcHHHHHHHHHHH
Q 011838 361 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK----INLISF--NPHCGS-----QFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 361 ~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~----VnLIp~--nP~~~~-----~~~~ps~e~i~~f~~~L 427 (476)
+.+.|.++. ..+|=|..++.++..++..++++++.. -.++|+ .|.... ..++++.++..+....+
T Consensus 154 a~~~Gi~~~--s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~ 229 (309)
T TIGR00423 154 AHRLGIPTT--ATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAIS 229 (309)
T ss_pred HHHcCCCce--eeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHH
Confidence 577787665 345556668899999999999887531 234554 342221 12455665555544443
No 92
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.13 E-value=6.9e-09 Score=110.60 Aligned_cols=181 Identities=12% Similarity=0.286 Sum_probs=124.6
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCH-----HHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV-----ENVIKA 286 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~-----d~V~~a 286 (476)
+....+.++.|||.+|.||..+.. |..|..+++++++++....+ .++..|+|.| ...+.+. ..+.++
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~------~g~~eI~l~d-~~~~~y~~~~~~~~~~~L 217 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD------DGVKEIHLIG-QNVTAYGKDIGDVPFSEL 217 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH------CCCeEEEEee-eccccccCCCCCCCHHHH
Confidence 445667778999999999998753 34478899999999987653 3688999988 5555421 135566
Q ss_pred HHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 287 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 287 i~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
++.+.+..|+ .++.+++. .+.+++.+++... -..+.+.+.+.+++..+. .++.++.+++.++++. +
T Consensus 218 l~~l~~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~---m~R~~t~~~~~~~v~~-l 289 (437)
T PRK14331 218 LYAVAEIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKL---MDRGYTKEEYLEKIEL-L 289 (437)
T ss_pred HHHHhcCCCc----cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHH---cCCCCCHHHHHHHHHH-H
Confidence 6655443454 24666552 2335555444432 246779999999988764 3567889999999987 3
Q ss_pred HhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 361 HFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 361 ~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++. +..+...+++ +|| ++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 290 -r~~~~gi~i~~d~IvG~Pg--ET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~ 341 (437)
T PRK14331 290 -KEYIPDITFSTDIIVGFPT--ETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTP 341 (437)
T ss_pred -HHhCCCCEEecCEEEECCC--CCHHHHHHHHHHHHhcCcceeeeeEecCCCCcc
Confidence 444 4444333322 366 789999999999998874 67778899988864
No 93
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.12 E-value=9.6e-09 Score=109.40 Aligned_cols=182 Identities=15% Similarity=0.347 Sum_probs=121.9
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCCHHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKA 286 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn~d~V~~a 286 (476)
+....+..|.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| +|-.+.+.+.+.++
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~------~g~kei~l~~~n~~~yg~~~~~~~~l~~L 212 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAK------QGYREVTFLGQNVDAYGKDLKDGSSLAKL 212 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHH------CCCcEEEEEEecccccccCCCCCccHHHH
Confidence 455667778999999999997643 33478899999999987543 3677888876 23233233345566
Q ss_pred HHHHHHhcCCCCCCCeEEEEe---CCchHHHHHHHhc-CC--eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 287 ANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE-SN--CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 287 i~~l~~~~Gl~i~~r~ItVsT---NG~~p~i~~L~~~-~~--~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
++.+.+..|+. ++.+.+ ..+.+++.+++.. +. ..|.|.+.+.+++..+. .++.++.+++.++++. +
T Consensus 213 l~~~~~~~~~~----~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~~~~~~~~~i~~-l 284 (434)
T PRK14330 213 LEEASKIEGIE----RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKL---MNRRYTREEYLELIEK-I 284 (434)
T ss_pred HHHHHhcCCce----EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHh---cCCCCCHHHHHHHHHH-H
Confidence 66444434543 233322 2334555555543 32 35789999999988653 3567889999999987 3
Q ss_pred HhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 361 HFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 361 ~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++. +..+...+++ +|| ++++++++..++++.++. ++++.+|.|.+|+.
T Consensus 285 -r~~~~~i~i~~d~IvGfPg--ET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~ 336 (434)
T PRK14330 285 -RSKVPDASISSDIIVGFPT--ETEEDFMETVDLVEKAQFERLNLAIYSPREGTV 336 (434)
T ss_pred -HHhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCh
Confidence 443 3334333322 255 789999999999998874 78888999998875
No 94
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.12 E-value=1e-08 Score=111.09 Aligned_cols=184 Identities=15% Similarity=0.271 Sum_probs=124.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC-----CcccCCHHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----GEPLHNVENVIKA 286 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm-----GEPLLn~d~V~~a 286 (476)
+....|.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.|. |--+.+...+.++
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~------~g~~ei~l~d~n~~~yG~d~~~~~~l~~L 229 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVD------EGVLEVTLLGQNVNAYGVSFGDRGAFSKL 229 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHH------CCCceEEEEeecccccccCCCCHHHHHHH
Confidence 345678889999999999998753 44578899999999987654 36778888762 2222333455566
Q ss_pred HHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHh-cC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 287 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLN-ES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 287 i~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~-~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
++.+....|+. +|.+++. .+.+++.+++. .+ -..|.+.+.+.+++..++ .++.++.+++.+.++. +
T Consensus 230 l~~l~~i~~l~----~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~---m~R~~t~~~~~~~v~~-l 301 (502)
T PRK14326 230 LRACGEIDGLE----RVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRA---MRRSYRSERFLGILEK-V 301 (502)
T ss_pred HHHHHhcCCcc----EEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHh---cCCCCCHHHHHHHHHH-H
Confidence 66554333442 4555442 23355555554 33 246789999999998765 3567889999999997 3
Q ss_pred HhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 361 HFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 361 ~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++....+.+..-+|-|+ +++++++++..++++.++. .+.+.+|.|.+|+.
T Consensus 302 -r~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~ 353 (502)
T PRK14326 302 -RAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTP 353 (502)
T ss_pred -HHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCh
Confidence 44333333444444332 3889999999999998764 57777899988864
No 95
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.11 E-value=7e-10 Score=101.55 Aligned_cols=96 Identities=21% Similarity=0.349 Sum_probs=69.3
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHH
Q 011838 211 RGRTTVCVSSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 287 (476)
Q Consensus 211 ~~r~tlCVSsq~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai 287 (476)
|++.++.+- ..|||++|+||+++.. ...+.++.+++++++.... ..+..|+|+| || ++++.+.+++
T Consensus 13 p~~~~~~vf-l~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-------~~~~gVt~SG-GE--l~~~~l~~ll 81 (147)
T TIGR02826 13 PNEYSLAFY-ITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-------SLISCVLFLG-GE--WNREALLSLL 81 (147)
T ss_pred CCCEEEEEE-eCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-------CCCCEEEEec-hh--cCHHHHHHHH
Confidence 344444443 5799999999999753 2245799999999987642 2356899999 99 6778899999
Q ss_pred HHHHHhcCCCCCCCeEEEEeCCchHHH-HHHHhcCCe
Q 011838 288 NIMVHEQGLHFSPRKVTVSTSGLVPQL-KQFLNESNC 323 (476)
Q Consensus 288 ~~l~~~~Gl~i~~r~ItVsTNG~~p~i-~~L~~~~~~ 323 (476)
+.+ ++.|++ +.+.|||+.+++ .++++..|+
T Consensus 82 ~~l-k~~Gl~-----i~l~Tg~~~~~~~~~il~~iD~ 112 (147)
T TIGR02826 82 KIF-KEKGLK-----TCLYTGLEPKDIPLELVQHLDY 112 (147)
T ss_pred HHH-HHCCCC-----EEEECCCCCHHHHHHHHHhCCE
Confidence 966 566876 999999876533 455555443
No 96
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.10 E-value=7.1e-09 Score=106.83 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=125.8
Q ss_pred ecCCCCCCCCCCCCCCCCC---ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhc-C
Q 011838 220 SQVGCAMNCQFCYTGRMGL---KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ-G 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g~---~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~-G 295 (476)
.+.+|+.+|.||...+... ...++++|+++.+..+.+ .+++.|.|+|..+|.+..+.+.++++.+.+.. +
T Consensus 47 ~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~ 120 (340)
T TIGR03699 47 YTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA------YGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH 120 (340)
T ss_pred cchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH------cCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 3689999999997543221 235899999999887643 36889999983488888888888888775432 2
Q ss_pred CCCCCC---e--EEEEeCCch-H-HHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe
Q 011838 296 LHFSPR---K--VTVSTSGLV-P-QLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 367 (476)
Q Consensus 296 l~i~~r---~--ItVsTNG~~-p-~i~~L~~~~~~~La-ISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~ 367 (476)
+++..- . ....|||+. + .+++|.+.+-..+. ......+++.++.+.|. +.+.++.+++++. +.+.|.+
T Consensus 121 i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~--~~s~~~~l~~i~~--a~~~Gi~ 196 (340)
T TIGR03699 121 IHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK--KISSEEWLEVMET--AHKLGLP 196 (340)
T ss_pred cCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC--CCCHHHHHHHHHH--HHHcCCC
Confidence 321100 0 012377875 4 55666666622221 23445778898887753 4568899999996 5778877
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEec--cCCCCCC---CCCCcHHHHHHHHHHHH
Q 011838 368 VLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISF--NPHCGSQ---FTPTTDEKMIEFRNILA 428 (476)
Q Consensus 368 V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLIp~--nP~~~~~---~~~ps~e~i~~f~~~L~ 428 (476)
+... +|=|..++.++..+.+.+++.++. ...++|+ .| ++++ .++++.++..+.....+
T Consensus 197 v~~~--~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p-~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 197 TTAT--MMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQP-GNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred ccce--eEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccC-CCCcccCCCCCCHHHHHHHHHHHH
Confidence 6544 344566888999999999988753 2245664 34 3443 24556666555554443
No 97
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.10 E-value=1.7e-08 Score=102.61 Aligned_cols=196 Identities=11% Similarity=0.146 Sum_probs=135.0
Q ss_pred ecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccC---CHHHHHHHHHHHHHh-c
Q 011838 220 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLH---NVENVIKAANIMVHE-Q 294 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLL---n~d~V~~ai~~l~~~-~ 294 (476)
.+.||+.+|.||...........+++|+.+++..+.+ .+++.|+++| |+ +-+ ..+.+.+.++.+.+. -
T Consensus 69 i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~------~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~~~~p 141 (302)
T TIGR00510 69 LGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD------MGLKYVVITS-VDRDDLEDGGASHLAECIEAIREKLP 141 (302)
T ss_pred cCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHHhcCC
Confidence 4799999999999764321223578888888877653 4789999999 53 322 234677778777543 2
Q ss_pred CCCCCCCeEEEEeC---CchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 295 GLHFSPRKVTVSTS---GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 295 Gl~i~~r~ItVsTN---G~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
++ +|.+.|. |..+.+..+.+.+...+..-+.+. +.++.++.+ ++++++.++.++. +.+....+.+.
T Consensus 142 ~i-----~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr---~~t~e~~Le~l~~--ak~~~pgi~~~ 210 (302)
T TIGR00510 142 NI-----KIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRP---GATYRWSLKLLER--AKEYLPNLPTK 210 (302)
T ss_pred CC-----EEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCC---CCCHHHHHHHHHH--HHHhCCCCeec
Confidence 33 3677664 434567777777633334445555 667776654 5778999999886 34443346666
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEec-cCCC-CCC-CCCCcHHHHHHHHHHHHhCCCe
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISF-NPHC-GSQ-FTPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~-nP~~-~~~-~~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
.-+|-|+.++++++.+..++++++++ .+.+.+| .|.. ..+ -+-.++++.+.++++..+.|+.
T Consensus 211 TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~ 276 (302)
T TIGR00510 211 SGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFL 276 (302)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCCh
Confidence 77788889999999999999999986 6677775 4532 222 2335568888999999999985
No 98
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.10 E-value=1.6e-08 Score=107.32 Aligned_cols=182 Identities=16% Similarity=0.224 Sum_probs=124.7
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCC------HHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVI 284 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn------~d~V~ 284 (476)
++....+.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ..-... .+.+.
T Consensus 122 ~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~------~G~~ei~l~~-~~~~~yg~d~~~~~~l~ 194 (418)
T PRK14336 122 PPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVR------RGSREVVLLG-QNVDSYGHDLPEKPCLA 194 (418)
T ss_pred CCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHH------CCCeEEEEEe-cCccccccCCCCcccHH
Confidence 3456777889999999999998753 44578899999999987653 3688999988 543321 12466
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011838 285 KAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 358 (476)
Q Consensus 285 ~ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~-~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~ 358 (476)
++++.+.+..|+ .++.+.+. .+.+++.+++.. . -..+.+.+.+.+++..+.+ ++.++.+++.++++.
T Consensus 195 ~Ll~~l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M---~R~~~~~~~~~~i~~ 267 (418)
T PRK14336 195 DLLSALHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAM---RRGYTNQQYRELVER 267 (418)
T ss_pred HHHHHHHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHh---CCCCCHHHHHHHHHH
Confidence 677666543343 24666542 233554444433 2 2356799999999886643 467889999999986
Q ss_pred HHHhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC
Q 011838 359 ELHFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ 411 (476)
Q Consensus 359 ~l~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~ 411 (476)
+ .+. +..+...+++ +|| ++.+++++..++++.++ ..+++.+|.|.+|+.
T Consensus 268 -l-r~~~pgi~i~~d~IvGfPG--ET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~ 320 (418)
T PRK14336 268 -L-KTAMPDISLQTDLIVGFPS--ETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTV 320 (418)
T ss_pred -H-HhhCCCCEEEEEEEEECCC--CCHHHHHHHHHHHHhcCCCEEEeeecCCCCCCh
Confidence 3 444 4444333322 355 78999999999999886 478888899988864
No 99
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.09 E-value=4.9e-08 Score=105.47 Aligned_cols=204 Identities=14% Similarity=0.233 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCCCCCCC--ccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhc-
Q 011838 222 VGCAMNCQFCYTGRMGL--KRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ- 294 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~--~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~- 294 (476)
..|+.+|.||....... .+.. ..+.+++++....+.+...+.++..|.|.| |+|++ +.+.+.++++.+.+..
T Consensus 171 PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~~Ll~~i~~~f~ 249 (488)
T PRK08207 171 PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELERLLEEIYENFP 249 (488)
T ss_pred CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHHHHHHHHHHhcc
Confidence 56999999999654311 1111 234455555544333322234688888888 99985 6777888887665443
Q ss_pred CCCCCCCeEEEEe-C--CchH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-eEE
Q 011838 295 GLHFSPRKVTVST-S--GLVP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVL 369 (476)
Q Consensus 295 Gl~i~~r~ItVsT-N--G~~p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~-~V~ 369 (476)
++. ..+.+++.. + .+.+ .++.+.+.+-..+.|++.+.++++.+.+ ++.++.+++.++++. +++.|. .|.
T Consensus 250 ~~~-~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i---gR~ht~e~v~~ai~~--ar~~Gf~~In 323 (488)
T PRK08207 250 DVK-NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAI---GRHHTVEDIIEKFHL--AREMGFDNIN 323 (488)
T ss_pred ccC-CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh---CCCCCHHHHHHHHHH--HHhCCCCeEE
Confidence 322 112456653 2 2334 5555666665578899999999998866 456789999999996 566776 444
Q ss_pred EEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC-------CCCCcHHHH----HHHHHHHHhCCCeE
Q 011838 370 FEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ-------FTPTTDEKM----IEFRNILAGAGCTV 434 (476)
Q Consensus 370 ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~-------~~~ps~e~i----~~f~~~L~~~Gi~v 434 (476)
+-.++ +|| ++.+++.+..+++..++. ++.+.++.+.+++. +..|+.++. +...+.|+++|+.-
T Consensus 324 ~DLI~GLPg--Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 324 MDLIIGLPG--EGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred EEEEeCCCC--CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHh
Confidence 44332 344 778999999999998864 78888877766653 334555443 44557788888854
No 100
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.09 E-value=1.2e-08 Score=109.02 Aligned_cols=182 Identities=12% Similarity=0.234 Sum_probs=124.8
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCH-----HHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV-----ENVIK 285 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~-----d~V~~ 285 (476)
++....+.++.|||.+|.||..+.. |..|..+++++++++....+ .+++.|+|.| ....... ..+.+
T Consensus 147 ~~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~------~G~~ei~l~~-~~~~~y~d~~~~~~l~~ 219 (445)
T PRK14340 147 GSISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE------AGYREITLLG-QNVNSYSDPEAGADFAG 219 (445)
T ss_pred CCcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH------CCCeEEEEee-cccchhhccCCCchHHH
Confidence 3456778889999999999998743 34578899999999987643 3688999987 4333211 13455
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~---~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+..+ ..++.+++. .+.+++.+++.. +-..|.+.+.+.+++..++ .++.++.+++.++++.
T Consensus 220 Ll~~l~~~~~----~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~---m~R~~t~~~~~~~v~~- 291 (445)
T PRK14340 220 LLDAVSRAAP----EMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRR---MNRGHTIEEYLEKIAL- 291 (445)
T ss_pred HHHHHhhcCC----CcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHh---cCCCCCHHHHHHHHHH-
Confidence 6665533211 124665543 234555444433 2346789999999988664 4677899999999997
Q ss_pred HHhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++. +..+...+++ +|| ++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 292 l-r~~~pgi~i~td~IvGfPg--ET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~ 344 (445)
T PRK14340 292 I-RSAIPGVTLSTDLIAGFCG--ETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTL 344 (445)
T ss_pred H-HHhCCCCEEeccEEEECCC--CCHHHHHHHHHHHHhcCCCEEeeEEecCCCCCh
Confidence 3 444 5544433333 366 789999999999998864 78888999998875
No 101
>PRK06267 hypothetical protein; Provisional
Probab=99.09 E-value=2e-08 Score=104.26 Aligned_cols=187 Identities=18% Similarity=0.247 Sum_probs=129.3
Q ss_pred cCCCC--CCCCCCCCCCCC------CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHH
Q 011838 221 QVGCA--MNCQFCYTGRMG------LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 292 (476)
Q Consensus 221 q~GCn--l~C~FC~tg~~g------~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~ 292 (476)
..+|+ .+|.||...... ..+.+++++|++++..+.+ .+++.+.++| |+++ ..+.+.++++.+.+
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~------~Gv~~~~lsg-G~~~-~~~el~~i~e~I~~ 105 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKR------IGWKLEFISG-GYGY-TTEEINDIAEMIAY 105 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHH------cCCCEEEEec-CCCC-CHHHHHHHHHHHHH
Confidence 58999 789999865421 1245799999999977644 2566677888 9995 44667777776654
Q ss_pred hcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEE
Q 011838 293 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 372 (476)
Q Consensus 293 ~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~iey 372 (476)
..+. .+.++.......-........ +...+++.+++.+.++.|. .++++.++.++. +.+.|.++...+
T Consensus 106 ~~~~-----~~~~s~G~~d~~~~~~~~l~G--v~g~~ET~~~~~~~~i~~~---~s~ed~~~~l~~--ak~aGi~v~~g~ 173 (350)
T PRK06267 106 IQGC-----KQYLNVGIIDFLNINLNEIEG--VVGAVETVNPKLHREICPG---KPLDKIKEMLLK--AKDLGLKTGITI 173 (350)
T ss_pred hhCC-----ceEeecccCCHHHHhhccccC--ceeeeecCCHHHHHhhCCC---CCHHHHHHHHHH--HHHcCCeeeeeE
Confidence 4343 255553332222111111112 3468899999999988873 478999999996 577888875543
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHh
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~---~~~ps~e~i~~f~~~L~~ 429 (476)
+ =|.+++.+|+.+++++++.++. .+.+.++.|.+|++ .++++.+++.++...++-
T Consensus 174 I--iGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 174 I--LGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred E--EeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 3 3456789999999999999875 57788899998874 456778887777766653
No 102
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.7e-09 Score=109.14 Aligned_cols=186 Identities=17% Similarity=0.360 Sum_probs=135.4
Q ss_pred CCceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCC-HHHH
Q 011838 211 RGRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHN-VENV 283 (476)
Q Consensus 211 ~~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn-~d~V 283 (476)
.++....|+.|.|||.+|+||..+.. |..+..++++|++++..+.+ .|++.|++.| +|--+-. ...+
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~------~G~kEI~L~gqdv~aYG~D~~~~~~~l 214 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA------QGVKEIVLTGQDVNAYGKDLGGGKPNL 214 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH------CCCeEEEEEEEehhhccccCCCCccCH
Confidence 35678889999999999999999864 45688999999999988654 4899999998 3544421 1235
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCC---chHHHHHHHhcC-C--eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011838 284 IKAANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLNES-N--CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 357 (476)
Q Consensus 284 ~~ai~~l~~~~Gl~i~~r~ItVsTNG---~~p~i~~L~~~~-~--~~LaISLda~~de~r~~I~p~~~~~~le~vleal~ 357 (476)
.++++.+.+-.|+. +|.+.|.= +.+.+.++..+. . -.|.++|-+.++..-+ -.+++|+.++.++-++
T Consensus 215 ~~Ll~~l~~I~G~~----riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk---~M~R~yt~e~~~~~i~ 287 (437)
T COG0621 215 ADLLRELSKIPGIE----RIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILK---RMKRGYTVEEYLEIIE 287 (437)
T ss_pred HHHHHHHhcCCCce----EEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHH---HhCCCcCHHHHHHHHH
Confidence 56666665555653 67777753 234555555442 2 2466888888887744 2467899999999999
Q ss_pred HHHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC
Q 011838 358 EELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ 411 (476)
Q Consensus 358 ~~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~ 411 (476)
+ + ++.-..+.+..-+|-|+ ..++++.+++.+++++.+ .+++..+|.|-+|++
T Consensus 288 k-~-R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTp 341 (437)
T COG0621 288 K-L-RAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTP 341 (437)
T ss_pred H-H-HHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCc
Confidence 8 3 45556677777666443 278899999999999986 489999999988764
No 103
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.08 E-value=1.4e-08 Score=108.38 Aligned_cols=183 Identities=15% Similarity=0.254 Sum_probs=122.5
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCC------HHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVIK 285 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn------~d~V~~ 285 (476)
+....|.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| ..-+.. ...+.+
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~------~G~~ei~l~~-~~~~~yg~d~~~~~~l~~ 218 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVS------EGYKEVTLLG-QNVNSYGKDLEEKIDFAD 218 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH------CCCcEEEEec-cccCcCCcCCCCCcCHHH
Confidence 455678889999999999998753 34478899999999987543 3688898988 442221 013455
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHH-hcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFL-NES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~-~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+-.|+. ++.+.+. .+.+++.+++ +.+ -..+.+.+.+.+++..+. .+++++.++++++++.
T Consensus 219 Ll~~l~~~~~~~----~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~~~~~~~~~i~~- 290 (439)
T PRK14328 219 LLRRVNEIDGLE----RIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKK---MNRHYTREYYLELVEK- 290 (439)
T ss_pred HHHHHHhcCCCc----EEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHh---CCCCCCHHHHHHHHHH-
Confidence 555554333432 4555442 2334554444 333 236789999999988764 3567889999999986
Q ss_pred HHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++....+.+..-+|-|+ +++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 291 l-r~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~ 343 (439)
T PRK14328 291 I-KSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTP 343 (439)
T ss_pred H-HHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCCh
Confidence 3 44433344443344332 4789999999999998863 67888999988764
No 104
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.07 E-value=1.3e-08 Score=108.04 Aligned_cols=182 Identities=16% Similarity=0.280 Sum_probs=119.8
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCCHHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKA 286 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn~d~V~~a 286 (476)
+....+.++.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|+| +|.+.- ..+.++
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~------~G~~ei~l~g~d~~~yg~d~~--~~l~~L 203 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA------EGCKEIWITSQDTGAYGRDIG--SRLPEL 203 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH------CCCeEEEEEeeccccccCCCC--cCHHHH
Confidence 355667789999999999998753 34577899999999987654 3788999987 222211 124445
Q ss_pred HHHHHHhcCCCCCCCeEEEEeC--C----chHHHHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011838 287 ANIMVHEQGLHFSPRKVTVSTS--G----LVPQLKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 358 (476)
Q Consensus 287 i~~l~~~~Gl~i~~r~ItVsTN--G----~~p~i~~L~~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~ 358 (476)
++.+.+-.+. .++.+++. . +.+.+.+++... -..+.+.+.+.+++..+.+ ++.++.+++.++++.
T Consensus 204 l~~l~~i~~~----~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m---~R~~~~~~~~~~i~~ 276 (420)
T TIGR01578 204 LRLITEIPGE----FRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEM---KREYTVSDFEDIVDK 276 (420)
T ss_pred HHHHHhCCCC----cEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhc---CCCCCHHHHHHHHHH
Confidence 5544332221 12444331 1 224444444322 1256799999999887653 466788999999986
Q ss_pred HHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 359 ELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 359 ~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++....+.+..-+|-|. +++++++.+.+++++.++. .+++.+|.|.+|+.
T Consensus 277 -i-~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~ 329 (420)
T TIGR01578 277 -F-RERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTP 329 (420)
T ss_pred -H-HHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCc
Confidence 3 44422344444444343 5889999999999998864 78899999998875
No 105
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.07 E-value=1.6e-08 Score=108.01 Aligned_cols=181 Identities=13% Similarity=0.275 Sum_probs=121.0
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC--------CHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH--------NVENV 283 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL--------n~d~V 283 (476)
+....+.++.|||++|.||..+.. |..+..++++|++++....+ .++..|+|.| -.-.. +...+
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~------~g~~ei~l~d-~~~~~y~~~~~~~~~~~l 218 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAE------QGVREITLLG-QNVNAYRGEGPDGEIADF 218 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHH------CCCcEEEEEe-eccccccCCCCCCCcchH
Confidence 456677778999999999998753 33456899999999987643 3677888876 22111 11245
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHH-hcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011838 284 IKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFL-NES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 357 (476)
Q Consensus 284 ~~ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~-~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~ 357 (476)
.++++.+.+..|+. ++.+++. .+.+++.+++ +.+ -..+.+.+.+.+++..+. .++.++.+++.++++
T Consensus 219 ~~Ll~~l~~~~~~~----~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~---m~R~~~~~~~~~~i~ 291 (444)
T PRK14325 219 AELLRLVAAIDGIE----RIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKA---MNRGHTALEYKSIIR 291 (444)
T ss_pred HHHHHHHHhcCCcc----EEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHh---CCCCCCHHHHHHHHH
Confidence 66666554434442 3555442 2345554444 332 236779999999988654 356788999999999
Q ss_pred HHHHhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 358 EELHFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 358 ~~l~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
. + ++. +..+...+++ +|| ++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 292 ~-l-r~~~~gi~v~~~~IvG~Pg--ET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 345 (444)
T PRK14325 292 K-L-RAARPDIAISSDFIVGFPG--ETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTP 345 (444)
T ss_pred H-H-HHHCCCCEEEeeEEEECCC--CCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCc
Confidence 7 3 444 3344433322 355 789999999999998864 67777888888874
No 106
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.07 E-value=1.9e-08 Score=107.39 Aligned_cols=184 Identities=13% Similarity=0.265 Sum_probs=124.6
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCC--------HHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN--------VEN 282 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn--------~d~ 282 (476)
++....+.++.||+.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ...... ...
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~------~g~~ei~l~~-~~~~~y~g~d~~~~~~~ 215 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE------KGVREITLLG-QNVNAYRGKDFEGKTMD 215 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH------cCCeEEEEEe-cccCCccCCCCCCCccc
Confidence 4566788889999999999998653 34477899999999987643 3688898987 322221 113
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHH-hcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHH
Q 011838 283 VIKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFL-NES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 356 (476)
Q Consensus 283 V~~ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~-~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal 356 (476)
+.++++.+.+..|+. .+.+++. .+.+++.+++ +.+ -..+.+.+.+.+++..+. .+++++.+++++++
T Consensus 216 l~~Ll~~l~~~~~~~----~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~---m~R~~t~~~~~~~v 288 (438)
T TIGR01574 216 FSDLLRELSTIDGIE----RIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL---MKRGYTREWYLNLV 288 (438)
T ss_pred HHHHHHHHHhcCCce----EEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh---cCCCCCHHHHHHHH
Confidence 556666665444542 3554432 2334444444 443 246779999999988764 35678899999999
Q ss_pred HHHHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 357 REELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 357 ~~~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+. + ++....+.+..-+|-|+ .++++++.+..+++++++. ++++.+|.|.+|+.
T Consensus 289 ~~-i-r~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 343 (438)
T TIGR01574 289 RK-L-RAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTP 343 (438)
T ss_pred HH-H-HHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCc
Confidence 87 3 44433344444444332 3789999999999998864 78888999988874
No 107
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.07 E-value=2.4e-08 Score=106.81 Aligned_cols=184 Identities=14% Similarity=0.312 Sum_probs=124.4
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC-----CcccC-CHHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----GEPLH-NVENVIK 285 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm-----GEPLL-n~d~V~~ 285 (476)
+...++..+.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.|. |-... +...+.+
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~------~G~~eI~l~~~~~~~yg~d~~~~~~~l~~ 220 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVD------RGAREITLLGQNVNSYGQDKHGDGTSFAQ 220 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHH------CCCeEEEEEecCccccccCCCCCCccHHH
Confidence 456788889999999999998653 44578899999999987654 36889999871 21110 0123455
Q ss_pred HHHHHHHhcCCCCCCCeEEEEe---CCchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsT---NG~~p~i~~L~~~-~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+..|+. ++.+++ +.+.+++.+++.. . -..|.+.+.+.+++..+. .+++|+.+++.++++.
T Consensus 221 Ll~~l~~~~g~~----~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~t~e~~~~~v~~- 292 (446)
T PRK14337 221 LLHKVAALPGLE----RLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKA---MGRKYDMARYLDIVTD- 292 (446)
T ss_pred HHHHHHhcCCCc----EEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHh---CCCCCCHHHHHHHHHH-
Confidence 555554434542 455543 2334555554443 2 246789999999988764 3567889999999987
Q ss_pred HHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++....+.+..-+|-|+ +++++++++..+++..++. .+++.+|.|.+|+.
T Consensus 293 l-r~~~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 293 L-RAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTR 345 (446)
T ss_pred H-HHhCCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCc
Confidence 3 44433344444444332 3789999999999998864 77888899988764
No 108
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.05 E-value=4.3e-08 Score=105.17 Aligned_cols=181 Identities=13% Similarity=0.249 Sum_probs=120.7
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCC--------HHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN--------VENV 283 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn--------~d~V 283 (476)
+....+..+.|||.+|.||..+.. |..+..++++|++++....+ .+++.|+|.| .....+ ...+
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~------~G~~ei~l~g-~~~~~y~~~~~~~~~~~~ 223 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSE------KGVREITLLG-QNVNSYRGRDREGNIVTF 223 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHH------CCCeEEEEEe-ecccccccccccCCccCH
Confidence 344556678999999999998753 33467899999999987543 3688899988 433221 0124
Q ss_pred HHHHHHHHH----hcCCCCCCCeEEEEeC---CchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHH
Q 011838 284 IKAANIMVH----EQGLHFSPRKVTVSTS---GLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 353 (476)
Q Consensus 284 ~~ai~~l~~----~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~---~~~~LaISLda~~de~r~~I~p~~~~~~le~vl 353 (476)
.++++.+.+ ..++. .+.+.+. .+.+++.+++.. +-..+.+.+.+.+++..+. .+++++.+++.
T Consensus 224 ~~Ll~~l~~~~~~~~~i~----~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~---m~R~~t~e~~~ 296 (455)
T PRK14335 224 PQLLRHIVRRAEVTDQIR----WIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKR---MNRSYTREHYL 296 (455)
T ss_pred HHHHHHHHHhhcccCCce----EEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHH---cCCCCCHHHHH
Confidence 455554432 12332 3544332 234555554433 3346779999999988764 35778999999
Q ss_pred HHHHHHHHhhC--CCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 354 ETLREELHFKN--NYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 354 eal~~~l~~~~--g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++++. + ++. +..+...+++ +|| ++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 297 ~~v~~-i-r~~~pgi~i~~d~IvGfPg--ET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~ 354 (455)
T PRK14335 297 SLVGK-L-KASIPNVALSTDILIGFPG--ETEEDFEQTLDLMREVEFDSAFMYHYNPREGTP 354 (455)
T ss_pred HHHHH-H-HHhCCCCEEEEEEEEeCCC--CCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Confidence 99997 3 444 4444433332 355 889999999999999864 78888999998864
No 109
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.04 E-value=3.6e-08 Score=106.98 Aligned_cols=182 Identities=16% Similarity=0.299 Sum_probs=125.8
Q ss_pred CceEEEEEecCCCCCCCCCCCCCC-CCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----CCcccCC-HHHHH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHN-VENVI 284 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----mGEPLLn-~d~V~ 284 (476)
++....|..+.|||.+|.||..+. .|..|..++++|++++....+ .++..|+|.| +|..+.+ ...+.
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~------~G~keI~L~g~n~~~yg~d~~~~~~~l~ 283 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAR------QGYKEITLLGQNVNAYGKDFEDIEYGLG 283 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHH------CCCcEEEEEeeccccCcccccccchHHH
Confidence 457788999999999999999864 344578899999999987643 3677888877 2333322 12355
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeCC---chHHHHHHHh-cCCe--EEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011838 285 KAANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLN-ESNC--ALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 358 (476)
Q Consensus 285 ~ai~~l~~~~Gl~i~~r~ItVsTNG---~~p~i~~L~~-~~~~--~LaISLda~~de~r~~I~p~~~~~~le~vleal~~ 358 (476)
++++.+.+ .++. ++.++|.- +.+++.+++. .+.+ .+.+.+.+.+++..+. .+++|+.++.++.++.
T Consensus 284 ~Ll~~I~~-~~i~----~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~---M~R~~t~e~~~~~v~~ 355 (509)
T PRK14327 284 DLMDEIRK-IDIP----RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKI---MARKYTRESYLELVRK 355 (509)
T ss_pred HHHHHHHh-CCCc----eEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHh---cCCCCCHHHHHHHHHH
Confidence 66665543 2442 46666532 2345545444 4422 6789999999988754 3577899999999987
Q ss_pred HHHhhCCCeEEEEEEE---eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 359 ELHFKNNYKVLFEYVM---LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 359 ~l~~~~g~~V~ieyvL---I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ ++....+.+..-+ +|| ++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 356 -l-r~~~p~i~i~tdiIvGfPg--ET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~ 408 (509)
T PRK14327 356 -I-KEAIPNVALTTDIIVGFPN--ETDEQFEETLSLYREVGFDHAYTFIYSPREGTP 408 (509)
T ss_pred -H-HHhCCCcEEeeeEEEeCCC--CCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCc
Confidence 3 4443344444333 366 788999999999998864 78888899988875
No 110
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.04 E-value=3.2e-08 Score=105.09 Aligned_cols=184 Identities=13% Similarity=0.241 Sum_probs=122.0
Q ss_pred CceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC------C---HH
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH------N---VE 281 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL------n---~d 281 (476)
++....|.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ..-.. + ..
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~------~G~keI~l~~-~~~~~yg~d~~~~~~~~ 197 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVN------NGAKEIFLLG-QNVNNYGKRFSSEHEKV 197 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHH------CCCcEEEEee-eccccccCCCcCCcccc
Confidence 3456777789999999999998763 33456799999999987643 3688898988 22211 0 01
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEe-C--CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHH
Q 011838 282 NVIKAANIMVHEQGLHFSPRKVTVST-S--GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 355 (476)
Q Consensus 282 ~V~~ai~~l~~~~Gl~i~~r~ItVsT-N--G~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vlea 355 (476)
.+.++++.+.+-.|+. ++.+++ + .+.+++.+++... -..+.+.+.+.+++..+. .++.++.++++++
T Consensus 198 ~l~~Ll~~l~~~~g~~----~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~---M~R~~t~~~~~~~ 270 (420)
T PRK14339 198 DFSDLLDKLSEIEGLE----RIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKA---MKRGYTKEWFLNR 270 (420)
T ss_pred cHHHHHHHHhcCCCcc----EEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHh---ccCCCCHHHHHHH
Confidence 3555666554334542 455532 2 2335554444432 246789999999988664 4577889999999
Q ss_pred HHHHHHhhCCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 356 LREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 356 l~~~l~~~~g~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
++. + .+....+.+..-+|-| =+++++++++..++++.++. ++++.+|.|.+|++
T Consensus 271 v~~-l-r~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 271 AEK-L-RALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTE 326 (420)
T ss_pred HHH-H-HHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCc
Confidence 987 3 4432233333333322 23789999999999998874 57888899998875
No 111
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.03 E-value=6.9e-08 Score=98.26 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCCCCCCCCCCcc---CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCCCCe
Q 011838 227 NCQFCYTGRMGLKR---HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFSPRK 302 (476)
Q Consensus 227 ~C~FC~tg~~g~~r---~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~i~~r~ 302 (476)
+|+||.....+... ..+.++|.+|+....+.+.. .+...|.|-| |.|+. ..+.+.++++.+.+... ...
T Consensus 39 gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~--~~~~~iyf~g-gt~t~l~~~~L~~l~~~i~~~~~----~~~ 111 (302)
T TIGR01212 39 GCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKK--DKKFIAYFQA-YTNTYAPVEVLKEMYEQALSYDD----VVG 111 (302)
T ss_pred CcccCCCCCCccccccccccCCCHHHHHHHHHHHhhc--cCEEEEEEEC-CCcCCCCHHHHHHHHHHHhCCCC----EEE
Confidence 79999876544222 23455678888777665532 2333354545 99995 56777777776543211 134
Q ss_pred EEEEeCC--chHHHHH----HHhcCC-eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEe
Q 011838 303 VTVSTSG--LVPQLKQ----FLNESN-CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 375 (476)
Q Consensus 303 ItVsTNG--~~p~i~~----L~~~~~-~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI 375 (476)
+++.|+- +.++..+ +.+.+- ..|.+.+.+.++++.+.+ ++.++.+++.++++. .++.|..+.+. +|
T Consensus 112 isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i---~Rg~t~~~~~~ai~~--l~~~gi~v~~~--lI 184 (302)
T TIGR01212 112 LSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI---NRGHDFACYVDAVKR--ARKRGIKVCSH--VI 184 (302)
T ss_pred EEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH---cCcChHHHHHHHHHH--HHHcCCEEEEe--EE
Confidence 7777753 2333322 323342 568899999999988765 456789999999996 46778766553 34
Q ss_pred CCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC---------CCCCCcHHH-HHHHHHHHHhCCCeEE
Q 011838 376 AGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---------QFTPTTDEK-MIEFRNILAGAGCTVF 435 (476)
Q Consensus 376 ~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~---------~~~~ps~e~-i~~f~~~L~~~Gi~v~ 435 (476)
-|. .++.+++.+.++++..++. .|.+.++.|.+++ .|.+++.++ ++.....++.....+.
T Consensus 185 ~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~ 256 (302)
T TIGR01212 185 LGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVV 256 (302)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeE
Confidence 333 4889999999999998865 7888888888775 356777766 5555666665554433
No 112
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.03 E-value=6.3e-08 Score=103.14 Aligned_cols=202 Identities=16% Similarity=0.171 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCC-CCccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRM-GLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~-g~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.-|+.+|.||..... +..... ..+.+++++....+.+. ...+..|.|-| |+|++ +.+.+.++++.+.+..++
T Consensus 47 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~--~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 47 PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALA--PARFASFAVGG-GTPTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcC--CCceeEEEEcC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 349999999986543 221111 23555666654433221 23577787766 99987 677777777776554444
Q ss_pred CCCCCeEEEEeCCc--hH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEE
Q 011838 297 HFSPRKVTVSTSGL--VP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEY 372 (476)
Q Consensus 297 ~i~~r~ItVsTNG~--~p-~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~iey 372 (476)
......+++.||.- .+ .++.+.+.+-..|.|++.+.+++..+.+ ++.++.+++.++++. +.+.|.+ +.+..
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~~~~~~~~ai~~--l~~~g~~~i~~dl 198 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQKRADVHQALEW--IRAAGFPILNIDL 198 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHcCCCeEEEEe
Confidence 31123589999973 34 4555556565578899999999877654 456688999999996 4667755 33432
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCCC---CCcHH----HHHHHHHHHHhCCCe
Q 011838 373 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFT---PTTDE----KMIEFRNILAGAGCT 433 (476)
Q Consensus 373 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~~---~ps~e----~i~~f~~~L~~~Gi~ 433 (476)
+. +|| ++.+++.+..+++..++. +|.+.++.+.+++.+. .++.+ ..+...+.|.+.|+.
T Consensus 199 I~GlP~--qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 199 IYGIPG--QTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred ecCCCC--CCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 22 344 788999999999988864 8888888777665421 12222 244556788889986
No 113
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.02 E-value=1.2e-07 Score=100.16 Aligned_cols=209 Identities=15% Similarity=0.197 Sum_probs=134.0
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCC---c--c-CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHH
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMGL---K--R-HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAA 287 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g~---~--r-~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai 287 (476)
++.|.. .=|..+|.||.-..... . + .-..++-++.+..-.+.......++..|.|-| |.|++ +.+.+.+++
T Consensus 12 ~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GG-GTps~l~~~~l~~ll 89 (400)
T PRK07379 12 SAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGG-GTPSLLSVEQLERIL 89 (400)
T ss_pred EEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHH
Confidence 344442 44999999998643211 1 1 11122223333221111111234687777766 99995 778888888
Q ss_pred HHHHHhcCCCCCCCeEEEEeC-C-ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhC
Q 011838 288 NIMVHEQGLHFSPRKVTVSTS-G-LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 364 (476)
Q Consensus 288 ~~l~~~~Gl~i~~r~ItVsTN-G-~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~ 364 (476)
+.+.+..++. ....+++.+| + +. +.++.+.+.+-..|.|.+.+.+++..+.+ ++.++.+++.++++. +++.
T Consensus 90 ~~i~~~~~~~-~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~~~~~~~ai~~--l~~~ 163 (400)
T PRK07379 90 TTLDQRFGIA-PDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHRVKDIFAAVDL--IHQA 163 (400)
T ss_pred HHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHc
Confidence 8776554443 1236888887 2 33 45666666665578899999999988765 456789999999996 4667
Q ss_pred CCe-EEEEEEE-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC---------CCCCcHHHH----HHHHHHHH
Q 011838 365 NYK-VLFEYVM-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ---------FTPTTDEKM----IEFRNILA 428 (476)
Q Consensus 365 g~~-V~ieyvL-I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~---------~~~ps~e~i----~~f~~~L~ 428 (476)
|.. +.+-.+. +|| ++.+++.+-++++..++ .+|.+.++.+.+++. +..|+.++. +...+.|.
T Consensus 164 G~~~v~~dlI~GlPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 241 (400)
T PRK07379 164 GIENFSLDLISGLPH--QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILT 241 (400)
T ss_pred CCCeEEEEeecCCCC--CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 765 4444332 355 78899999999988886 488888888776652 344665443 34557788
Q ss_pred hCCCe
Q 011838 429 GAGCT 433 (476)
Q Consensus 429 ~~Gi~ 433 (476)
++|+.
T Consensus 242 ~~Gy~ 246 (400)
T PRK07379 242 QAGYE 246 (400)
T ss_pred HcCCc
Confidence 89985
No 114
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.01 E-value=2.8e-09 Score=98.28 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=61.7
Q ss_pred ecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec
Q 011838 196 LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 272 (476)
Q Consensus 196 l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G 272 (476)
+.||+++..+++ ..|||++|+||+++..- ..+.++ .+.++++....... ......|+|+|
T Consensus 11 ~~~GpG~r~~if-------------~~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~---~~~~~gvt~sG 73 (154)
T PRK11121 11 VVNGPGTRCTLF-------------VSGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDT---RIKRQGLSLSG 73 (154)
T ss_pred eecCCCcEEEEE-------------cCCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHh---CCCCCcEEEEC
Confidence 345666665554 48999999999987531 123345 34455554432221 11236789999
Q ss_pred CCcccC--CHHHHHHHHHHHHHhc-CCCCCCCeEEEEeCCch-HHH----HHHHhcCC
Q 011838 273 MGEPLH--NVENVIKAANIMVHEQ-GLHFSPRKVTVSTSGLV-PQL----KQFLNESN 322 (476)
Q Consensus 273 mGEPLL--n~d~V~~ai~~l~~~~-Gl~i~~r~ItVsTNG~~-p~i----~~L~~~~~ 322 (476)
||||+ |.+.+.++++.+.+.. +. .| +.|||+. +++ .++++..|
T Consensus 74 -GEPl~~~~~~~l~~l~~~~k~~~~~~-----~i-~~~tGy~~eel~~~~~~~l~~~D 124 (154)
T PRK11121 74 -GDPLHPQNVPDILKLVQRVKAECPGK-----DI-WVWTGYKLDELNAAQRQVVDLID 124 (154)
T ss_pred -CCccchhhHHHHHHHHHHHHHHCCCC-----CE-EEecCCCHHHHHHHHHHHHhhCC
Confidence 99998 4577878887665432 23 25 4579974 333 24455445
No 115
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.97 E-value=9.2e-08 Score=102.94 Aligned_cols=184 Identities=15% Similarity=0.236 Sum_probs=121.5
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC-----C---ccc--CCHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----G---EPL--HNVE 281 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm-----G---EPL--Ln~d 281 (476)
+....+.++.|||.+|.||..+.. |..|..+++++++++....+ .++..|+|.|. | +.. .+..
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~------~g~~eI~l~~~~~~~y~~d~~~~~~~~~~ 240 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFA------KGYKEVTLLGQNVDSYLWYGGGLKKDEAV 240 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHH------CCCeEEEEEeecccccccccCCccccccc
Confidence 456677889999999999998653 34578899999999987643 36778888761 1 110 0112
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEe---CCchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHH
Q 011838 282 NVIKAANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 355 (476)
Q Consensus 282 ~V~~ai~~l~~~~Gl~i~~r~ItVsT---NG~~p~i~~L~~~---~~~~LaISLda~~de~r~~I~p~~~~~~le~vlea 355 (476)
.+.++++.+.+..+ ..++.+++ +.+.+++.+++.. +-..|.+.+.+.+++..+. .+++++.+++.++
T Consensus 241 ~l~~Ll~~l~~~~~----~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~---m~R~~t~~~~~~~ 313 (467)
T PRK14329 241 NFAQLLEMVAEAVP----DMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKL---MNRKYTREWYLDR 313 (467)
T ss_pred cHHHHHHHHHhcCC----CcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHh---cCCCCCHHHHHHH
Confidence 35555555533221 12466654 2334555555543 3346789999999988664 3577888999988
Q ss_pred HHHHHHhhCCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC
Q 011838 356 LREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ 411 (476)
Q Consensus 356 l~~~l~~~~g~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~ 411 (476)
++. + ++....+.+..-+|-| =+++++++++..++++.++ ..+++.+|.|.+|+.
T Consensus 314 i~~-i-r~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~ 369 (467)
T PRK14329 314 IDA-I-RRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTY 369 (467)
T ss_pred HHH-H-HHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCCh
Confidence 886 3 4433333343333322 2388999999999999886 478888999988864
No 116
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=98.96 E-value=6.2e-07 Score=91.83 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=130.3
Q ss_pred EEecCCCCC----CCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC---cccC-CHHHHHHHHHH
Q 011838 218 VSSQVGCAM----NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG---EPLH-NVENVIKAANI 289 (476)
Q Consensus 218 VSsq~GCnl----~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG---EPLL-n~d~V~~ai~~ 289 (476)
+-.+.||++ +|.||...... .+..+++++.+|+..+.+.++.......--+|++ | +|.. ..+.+.++++.
T Consensus 19 i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~~~~~i~~~ 96 (313)
T TIGR01210 19 ILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKETRNYIFEK 96 (313)
T ss_pred EEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHHHHHHHHHH
Confidence 334799999 59999755433 2456999999999988765532100011123555 5 5544 45566666665
Q ss_pred HHHhcC-CCCCCCeEEEEeCC--ch-HHHHHHHhcCC-eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhC
Q 011838 290 MVHEQG-LHFSPRKVTVSTSG--LV-PQLKQFLNESN-CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 364 (476)
Q Consensus 290 l~~~~G-l~i~~r~ItVsTNG--~~-p~i~~L~~~~~-~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~ 364 (476)
+.+ .+ + ..+++.|+- +. +.+..+.+.+- ..|.+.+.+.+++.+++. +++.++.+++.++++. .++.
T Consensus 97 l~~-~~~~----~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~--inKg~t~~~~~~ai~~--~~~~ 167 (313)
T TIGR01210 97 IAQ-RDNL----KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKS--INKGSTFEDFIRAAEL--ARKY 167 (313)
T ss_pred HHh-cCCc----ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHh--hCCCCCHHHHHHHHHH--HHHc
Confidence 543 33 2 357887764 23 45666666663 368999999999988532 3567789999999996 5778
Q ss_pred CCeEEEEEEE-eCCCC--CCHHHHHHHHHHHhcCCCeEEEEeccCCCCC---------CCCCCcHHHHHHHHHHHHhCCC
Q 011838 365 NYKVLFEYVM-LAGVN--DSFDDAKRLIGLVQGIPCKINLISFNPHCGS---------QFTPTTDEKMIEFRNILAGAGC 432 (476)
Q Consensus 365 g~~V~ieyvL-I~GvN--Ds~ed~~~La~ll~~l~~~VnLIp~nP~~~~---------~~~~ps~e~i~~f~~~L~~~Gi 432 (476)
|..+...+++ +|+.. ++.+++.+.++++..++.+|.+.|+++.+++ .|++|.-..+.+..+.+++.+.
T Consensus 168 Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~ 247 (313)
T TIGR01210 168 GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIGA 247 (313)
T ss_pred CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 8876554332 24432 3456666677777766668888888887764 3667744444444444444454
Q ss_pred eEE
Q 011838 433 TVF 435 (476)
Q Consensus 433 ~v~ 435 (476)
.|.
T Consensus 248 ~~~ 250 (313)
T TIGR01210 248 EVL 250 (313)
T ss_pred eEE
Confidence 443
No 117
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.95 E-value=8.2e-08 Score=102.77 Aligned_cols=183 Identities=14% Similarity=0.240 Sum_probs=122.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-----C------CcccC-CH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----M------GEPLH-NV 280 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-----m------GEPLL-n~ 280 (476)
....+..+.|||.+|.||..+.. |..+..+++++++++....+ .++..|+|.| + +.|.. +.
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~------~g~kei~l~~~~~~~yg~d~~~~~p~~~~~ 221 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA------QGYKEITLLGQNIDAYGRDLPGTTPEGRHQ 221 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH------CCCcEEEEEecccchhcCCCCCcccccccc
Confidence 34567778999999999998753 34467889999999987543 3677888865 1 22332 12
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHH
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 354 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTN---G~~p~i~~L~~~~---~~~LaISLda~~de~r~~I~p~~~~~~le~vle 354 (476)
+.+.++++.+.+..|+. ++.+++. .+.+++.+++... -..+.|.+.+.+++..+. .++.++.++..+
T Consensus 222 ~~l~~Ll~~i~~~~~~~----rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~---m~R~~t~e~~~~ 294 (448)
T PRK14333 222 HTLTDLLYYIHDVEGIE----RIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKA---MARGYTHEKYRR 294 (448)
T ss_pred ccHHHHHHHHHhcCCCe----EEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHh---cCCCCCHHHHHH
Confidence 34566666554444542 4666432 1234554444332 235668899999988764 356788999999
Q ss_pred HHHHHHHhhCCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 355 TLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 355 al~~~l~~~~g~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
.++. + ++....+.+..-+|-| -+++++++++..++++.++. .+++.+|.|.+|+.
T Consensus 295 ~i~~-l-r~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~ 351 (448)
T PRK14333 295 IIDK-I-REYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTP 351 (448)
T ss_pred HHHH-H-HHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCc
Confidence 9987 3 4453334444434422 23889999999999998874 78889999998875
No 118
>PLN02428 lipoic acid synthase
Probab=98.93 E-value=2.6e-07 Score=95.60 Aligned_cols=197 Identities=10% Similarity=0.114 Sum_probs=128.8
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc----ccCCHHHHHHHHHHHHHhcCC
Q 011838 221 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQGL 296 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE----PLLn~d~V~~ai~~l~~~~Gl 296 (476)
..||+.+|.||+-+.........++|+.+.+..+.+ .+++.|+|+| |. |-...+.+.++++.+.+...
T Consensus 109 g~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~------~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~~~P- 180 (349)
T PLN02428 109 GDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS------WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQLKP- 180 (349)
T ss_pred cCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH------cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHHhCC-
Confidence 589999999999765322234567777776655443 3677899998 74 33345567777776654332
Q ss_pred CCCCCeEEEEeCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 297 HFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 297 ~i~~r~ItVsTNG~~---p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
..++.+.|-+.. +.++.|.+.+...+...+++ .+..+.++.+ ++.+.++.++.++. +++....+.+..-
T Consensus 181 ---~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~~--ak~~~pGi~tkSg 252 (349)
T PLN02428 181 ---EILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLKH--AKESKPGLLTKTS 252 (349)
T ss_pred ---CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHHH--HHHhCCCCeEEEe
Confidence 124777666542 46677777774456677775 4678877762 13467889998886 3444222334444
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCe-EEEEec-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCK-INLISF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~-VnLIp~-nP~~~~-~-~~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
+|=|+.++++|+.+++++++.+++. +-+..| .|.... . .+-.++++.+.++++..+.|+.
T Consensus 253 ~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~ 316 (349)
T PLN02428 253 IMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFR 316 (349)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCc
Confidence 5557789999999999999999864 333344 343211 1 1224568899999999999986
No 119
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=98.90 E-value=3.5e-07 Score=95.11 Aligned_cols=197 Identities=13% Similarity=0.190 Sum_probs=129.4
Q ss_pred CCCCCCCCCCCCCCCccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCC
Q 011838 224 CAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFS 299 (476)
Q Consensus 224 Cnl~C~FC~tg~~g~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~i~ 299 (476)
|..+|.||.-... ..... -.+..++++....+.+. ...++.|.|-| |-|++ ..+.+.++++.+.+. +. .
T Consensus 16 C~~kC~yC~f~~~-~~~~~~~~~~~~~~~~l~~ei~~~~--~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i~~~--~~-~ 88 (353)
T PRK05904 16 CQYICTFCDFKRI-LKTPQTKKIFKDFLKNIKMHIKNFK--IKQFKTIYLGG-GTPNCLNDQLLDILLSTIKPY--VD-N 88 (353)
T ss_pred ccCcCCCCCCeec-cCCcccHHHHHHHHHHHHHHHHHhc--CCCeEEEEECC-CccccCCHHHHHHHHHHHHHh--cC-C
Confidence 9999999986553 11111 12334444443222221 24577776666 99987 667777777766543 21 2
Q ss_pred CCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEEE-
Q 011838 300 PRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM- 374 (476)
Q Consensus 300 ~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyvL- 374 (476)
...+++.+|.- . +.++.+.+.+--.|.|.+.+.+++..+.+ ++.++.+++.++++. .++.|.. +.+..+.
T Consensus 89 ~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l---~R~~~~~~~~~ai~~--lr~~G~~~v~~dlI~G 163 (353)
T PRK05904 89 NCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL---NRTHTIQDSKEAINL--LHKNGIYNISCDFLYC 163 (353)
T ss_pred CCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEEEeec
Confidence 24699999974 3 45566666664578899999999988765 356789999999996 4666654 5554332
Q ss_pred eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCCC----CCCc----HHHHHHHHHHHHhCCCeE
Q 011838 375 LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQF----TPTT----DEKMIEFRNILAGAGCTV 434 (476)
Q Consensus 375 I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~~----~~ps----~e~i~~f~~~L~~~Gi~v 434 (476)
+|| ++.+++.+..+++..++ .+|.+.++.+.+++.+ ..++ .+.++...+.|++.|+.-
T Consensus 164 lPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 164 LPI--LKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 355 77899999999998886 4888888887776532 1122 234556678888999864
No 120
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.88 E-value=2.6e-08 Score=100.29 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=107.5
Q ss_pred cCCCCCCCCCCCCCCCCCc--------cC-CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 221 QVGCAMNCQFCYTGRMGLK--------RH-LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~--------r~-lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
|.-||.+|.||..+...+. +. -+.++|++++... +-..+.++| |||++..+.+.+.++.++
T Consensus 35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~---------~a~GasiTG-GdPl~~ieR~~~~ir~LK 104 (353)
T COG2108 35 TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM---------DALGASITG-GDPLLEIERTVEYIRLLK 104 (353)
T ss_pred ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh---------ccccccccC-CChHHHHHHHHHHHHHHH
Confidence 7889999999998643221 11 2456666666542 123445779 999999999999999998
Q ss_pred HhcCCCCCCCeEEEEeCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~---p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
++.|-. .||.+.|+|+. +.+++|.+.+..-+.+....++. + ..++.+++++. +.+.+..+
T Consensus 105 ~efG~~---fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~-----------~-~~e~~i~~l~~--A~~~g~dv 167 (353)
T COG2108 105 DEFGED---FHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS-----------K-SSEKYIENLKI--AKKYGMDV 167 (353)
T ss_pred Hhhccc---eeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccc-----------c-ccHHHHHHHHH--HHHhCccc
Confidence 888765 47999999985 45677777774443344331221 1 13567788874 56788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCC-CeEEEEe
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIP-CKINLIS 403 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~-~~VnLIp 403 (476)
.+|...+||. ++.+.++++++.+.+ ..+|+..
T Consensus 168 G~EiPaipg~---e~~i~e~~~~~~~~~~~FlNiNE 200 (353)
T COG2108 168 GVEIPAIPGE---EEAILEFAKALDENGLDFLNINE 200 (353)
T ss_pred eeecCCCcch---HHHHHHHHHHHHhcccceeeeee
Confidence 9999999984 556788888888776 4566654
No 121
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.87 E-value=8.5e-07 Score=93.48 Aligned_cols=201 Identities=13% Similarity=0.137 Sum_probs=129.8
Q ss_pred CCCCCCCCCCCCCCCCCcc--CCC----HHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhc
Q 011838 222 VGCAMNCQFCYTGRMGLKR--HLT----AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ 294 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r--~lt----~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~ 294 (476)
.=|.-+|.||.-....... ... .+.+..++......+ .+..+..|.|-| |.|++ ..+.+.++++.+.+..
T Consensus 27 PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~--~~~~i~siy~GG-GTPs~L~~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 27 PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLV--WGRQVHTVFIGG-GTPSLLSAAGLDRLLSDVRALL 103 (394)
T ss_pred CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhc--cCCceeEEEECC-CCcCCCCHHHHHHHHHHHHHhC
Confidence 3499999999854332111 122 333444443322111 124677787766 99997 5778888888776554
Q ss_pred CCCCCCCeEEEEeCC-c-h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 295 GLHFSPRKVTVSTSG-L-V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 295 Gl~i~~r~ItVsTNG-~-~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.+. ....|++.+|- . . +.++.|.+.+--.+.|.+.+.+++..+.+ ++.++.+++.++++. ..+.+..|.+-
T Consensus 104 ~~~-~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l---~R~~~~~~~~~~i~~--~~~~~~~v~~d 177 (394)
T PRK08898 104 PLD-PDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKAL---GRIHDGAEARAAIEI--AAKHFDNFNLD 177 (394)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHhCCceEEE
Confidence 442 22469999983 3 2 56777777775567899999999998765 345667888888875 34444445544
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC-----CCCcHHHH----HHHHHHHHhCCCe
Q 011838 372 YVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKM----IEFRNILAGAGCT 433 (476)
Q Consensus 372 yvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~-----~~ps~e~i----~~f~~~L~~~Gi~ 433 (476)
+|-|+ +++.+++.+-++.+..++. +|.+.++.+.+++.+ ..|+.+.. +...+.|.+.|+.
T Consensus 178 --lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 248 (394)
T PRK08898 178 --LMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYA 248 (394)
T ss_pred --EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 44443 4788899888888887764 888888887776643 23444433 3345778888875
No 122
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=98.86 E-value=1.5e-06 Score=91.65 Aligned_cols=200 Identities=13% Similarity=0.172 Sum_probs=125.6
Q ss_pred CCCCCCCCCCCCCCCCCccCCCHHH----HHHHHHHHHHHhcccCCCeEEEEEecCCccc-CCHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHLTAAE----IVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~lt~~E----Iveqv~~~~~~l~~~~~~i~nIvf~GmGEPL-Ln~d~V~~ai~~l~~~~Gl 296 (476)
.=|.-+|.||.-......+ ...+. +..++....+.+. +..++.|.|-| |.|+ +..+.+.++++.+.+..++
T Consensus 19 PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~--~~~i~tiy~GG-GTPs~l~~~~l~~ll~~i~~~~~~ 94 (390)
T PRK06582 19 PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQ--NKYIKSIFFGG-GTPSLMNPVIVEGIINKISNLAII 94 (390)
T ss_pred CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHcc--CCceeEEEECC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 4599999999864432211 12222 3334433322221 24688787766 9995 5677777777766554343
Q ss_pred CCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 297 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 297 ~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
. ....|++.+|.- . +.++.|.+.+-..|.|.+.+.+++..+. .++.++.++++++++. +.+....|.+-.+
T Consensus 95 ~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~---lgR~h~~~~~~~ai~~--~~~~~~~v~~DlI 168 (390)
T PRK06582 95 D-NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKK---LGRTHDCMQAIKTIEA--ANTIFPRVSFDLI 168 (390)
T ss_pred C-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHH---cCCCCCHHHHHHHHHH--HHHhCCcEEEEee
Confidence 2 224699999974 2 4566666666567889999999987665 3466789999999986 3444445555543
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCC---------CCCCCcHHHH----HHHHHHHHhCCCe
Q 011838 374 M-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS---------QFTPTTDEKM----IEFRNILAGAGCT 433 (476)
Q Consensus 374 L-I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~---------~~~~ps~e~i----~~f~~~L~~~Gi~ 433 (476)
. +|| ++.++..+-++.+..++ .+|.+.++...+++ .+..|+.++. +...+.|.++|+.
T Consensus 169 ~GlPg--qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 241 (390)
T PRK06582 169 YARSG--QTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF 241 (390)
T ss_pred cCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 3 455 55667766555555554 58888887766554 2445664443 3445778888875
No 123
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.86 E-value=2.2e-07 Score=96.44 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=113.6
Q ss_pred ecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc-CCHHHHHHHHHHHHHhc-
Q 011838 220 SQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQ- 294 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL-Ln~d~V~~ai~~l~~~~- 294 (476)
.+.+|+.+|.||.-.+.. ....++++||++++..+.+ .+++.|.+.| |+.. +..+.+.++++.+++..
T Consensus 54 ~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~------~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 54 YTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA------PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEAYP 126 (351)
T ss_pred cccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH------CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHCC
Confidence 479999999999976421 1123899999999887643 4788999998 8654 34678888888876543
Q ss_pred CCCCCCCeEEEE----------eCCch-H-HHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011838 295 GLHFSPRKVTVS----------TSGLV-P-QLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 361 (476)
Q Consensus 295 Gl~i~~r~ItVs----------TNG~~-p-~i~~L~~~~~~~La-ISLda~~de~r~~I~p~~~~~~le~vleal~~~l~ 361 (476)
+++ +... ..|.. + .+++|.+.+-..+. ..+...+++.|.++.|. +.+.++.++.++. +
T Consensus 127 ~i~-----i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~--~~~~~~~l~~i~~--a 197 (351)
T TIGR03700 127 DLH-----VKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPE--KISAERWLEIHRT--A 197 (351)
T ss_pred Cce-----EEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCC--CCCHHHHHHHHHH--H
Confidence 332 3332 24653 3 47788887732222 36667788899888764 3457888899986 5
Q ss_pred hhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEecc
Q 011838 362 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN 405 (476)
Q Consensus 362 ~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLIp~n 405 (476)
.+.|.++.. .+|=|.-+++++..+....+++++. ...+||++
T Consensus 198 ~~~Gi~~~s--g~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~ 243 (351)
T TIGR03700 198 HELGLKTNA--TMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLA 243 (351)
T ss_pred HHcCCCcce--EEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeec
Confidence 677876644 4455666788888888788877754 22456654
No 124
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.86 E-value=7.6e-07 Score=95.41 Aligned_cols=201 Identities=16% Similarity=0.246 Sum_probs=131.2
Q ss_pred CCCCCCCCCCCCCCCcc---CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCC
Q 011838 224 CAMNCQFCYTGRMGLKR---HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFS 299 (476)
Q Consensus 224 Cnl~C~FC~tg~~g~~r---~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~i~ 299 (476)
|+.+|.||.-.+....+ .-..+.+++++....+........++.|.|-| |-|++ +.+.+.++++.+.+...+. .
T Consensus 71 C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ll~~i~~~~~l~-~ 148 (449)
T PRK09058 71 CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLARLITALREYLPLA-P 148 (449)
T ss_pred cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHHHHHHHHHhCCCC-C
Confidence 99999999854432111 12344555555543221000123577776655 99996 6777888887765544443 1
Q ss_pred CCeEEEEeCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCC-CeEEEEEEE-
Q 011838 300 PRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEYVM- 374 (476)
Q Consensus 300 ~r~ItVsTNG--~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g-~~V~ieyvL- 374 (476)
...+++.+|= +. +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.+++.++++. ..+.| ..|.+-.+.
T Consensus 149 ~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~~~~~~~i~~--l~~~g~~~v~~DlI~G 223 (449)
T PRK09058 149 DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDREEVLARLEE--LVARDRAAVVCDLIFG 223 (449)
T ss_pred CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCHHHHHHHHHH--HHhCCCCcEEEEEEee
Confidence 2358998873 33 45666666665678899999999988765 456678999999996 35566 455555433
Q ss_pred eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC---------CCCC-cHHH----HHHHHHHHHhCCCe
Q 011838 375 LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ---------FTPT-TDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 375 I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~---------~~~p-s~e~----i~~f~~~L~~~Gi~ 433 (476)
+|| ++.+++.+-.+++..++ .+|.+.++.+.+++. +..| +.++ ++...+.|.++|+.
T Consensus 224 lPg--qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 224 LPG--QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 465 67888988888888776 488888888877652 3344 4433 33446778899986
No 125
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=98.83 E-value=8.1e-07 Score=93.17 Aligned_cols=201 Identities=12% Similarity=0.178 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCCCCCCccCC----CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHL----TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~l----t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.=|.-+|.||.-......+ . -.+.+.+++....+.+. ...++.|.|-| |-|++ +.+.+.++++.+.+...+
T Consensus 12 PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~--~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i~~~f~~ 87 (380)
T PRK09057 12 PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTG--PRTLTSIFFGG-GTPSLMQPETVAALLDAIARLWPV 87 (380)
T ss_pred CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcC--CCCcCeEEeCC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 3399999999865432112 2 23445555554333331 24677777766 99996 567788888877654443
Q ss_pred CCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 297 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 297 ~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
. ....|++.+|-- . +.++.|.+.+-..|.+.+.+.+++..+.+ ++.++.+++.++++. +++.+..|.+-.+
T Consensus 88 ~-~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l---~R~~~~~~~~~ai~~--~~~~~~~v~~dli 161 (380)
T PRK09057 88 A-DDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFL---GRLHSVAEALAAIDL--AREIFPRVSFDLI 161 (380)
T ss_pred C-CCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHhCccEEEEee
Confidence 2 123589999852 2 56777777775678899999999987654 566789999999986 3444554554432
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCC---------CCCCCcHH----HHHHHHHHHHhCCCeE
Q 011838 374 M-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS---------QFTPTTDE----KMIEFRNILAGAGCTV 434 (476)
Q Consensus 374 L-I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~---------~~~~ps~e----~i~~f~~~L~~~Gi~v 434 (476)
. +|| ++.++..+-.+.+..++ .+|.+.++.+.+++ .+..|+.+ .++...+.|.+.|+..
T Consensus 162 ~GlPg--qt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ 235 (380)
T PRK09057 162 YARPG--QTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPA 235 (380)
T ss_pred cCCCC--CCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCch
Confidence 2 355 56767766555555554 48888888777664 24456654 3556667888888753
No 126
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=98.83 E-value=5.6e-07 Score=94.10 Aligned_cols=196 Identities=13% Similarity=0.230 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCCCCCCCccCCCHH----HHHHH-HHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHLTAA----EIVEQ-AVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQG 295 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~lt~~----EIveq-v~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~G 295 (476)
.=|.-+|.||.-..... ..-..+ .++.+ +....+.. ....++.|.|-| |.|++ ..+.+.++++.+.+..+
T Consensus 14 PFC~~~C~yC~f~~~~~-~~~~~~~y~~~l~~E~~~~~~~~~--~~~~i~~iy~GG-GTPs~l~~~~l~~ll~~i~~~~~ 89 (370)
T PRK06294 14 PFCTKKCHYCSFYTIPY-KEESVSLYCNAVLKEGLKKLAPLR--CSHFIDTVFFGG-GTPSLVPPALIQDILKTLEAPHA 89 (370)
T ss_pred CCccCcCCCCcCcccCC-CccCHHHHHHHHHHHHHHHhhhhc--cCCceeEEEECC-CccccCCHHHHHHHHHHHHhCCC
Confidence 33999999997544321 111222 22333 22111111 113566666655 99997 45677777776643322
Q ss_pred CCCCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEE
Q 011838 296 LHFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFE 371 (476)
Q Consensus 296 l~i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ie 371 (476)
..|++++|.- . +.++.+.+.+-..+.|.+.+.+++..+.+ ++.++.+++.++++. +++.|.. |.+.
T Consensus 90 -----~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~~~~~~ai~~--~~~~g~~~v~~D 159 (370)
T PRK06294 90 -----TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSSSKAIDAVQE--CSEHGFSNLSID 159 (370)
T ss_pred -----CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCeEEEE
Confidence 3589999953 3 45666666665578899999999887765 456788999999986 4666653 5554
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC---------CCCcHHH----HHHHHHHHHhCCCe
Q 011838 372 YVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---------TPTTDEK----MIEFRNILAGAGCT 433 (476)
Q Consensus 372 yvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~---------~~ps~e~----i~~f~~~L~~~Gi~ 433 (476)
+|-|+ .++.+++.+-++.+..++. +|.+.++.+.+++.+ ..|+.+. ++...+.|.++|+.
T Consensus 160 --li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (370)
T PRK06294 160 --LIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 (370)
T ss_pred --eecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 44443 2678899998888888864 888888887766431 2345443 33455778888874
No 127
>PRK08445 hypothetical protein; Provisional
Probab=98.80 E-value=2.9e-07 Score=95.52 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=112.5
Q ss_pred cCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCCHHHHHHHHHHHHHhcC-
Q 011838 221 QVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHNVENVIKAANIMVHEQG- 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn~d~V~~ai~~l~~~~G- 295 (476)
+.+|+.+|.||.-.+. .....++.+||++.+.++.+ .+.+.|+++| | .|-+..+.+.++++.+.+...
T Consensus 49 Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~------~g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~ 121 (348)
T PRK08445 49 TNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLA------IGGTQILFQG-GVHPKLKIEWYENLVSHIAQKYPT 121 (348)
T ss_pred ccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHH------cCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 7999999999997652 22235799999999988754 2567899998 6 555678888888887765532
Q ss_pred CCCCCCeEEEEe----------CCc--hHHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011838 296 LHFSPRKVTVST----------SGL--VPQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 362 (476)
Q Consensus 296 l~i~~r~ItVsT----------NG~--~p~i~~L~~~~~~~L-aISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~ 362 (476)
++ +.-.| .|. .+.+++|.+.+...+ .+.+...+++.++++.| ++.+.++-++.++. +.
T Consensus 122 i~-----~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~p--k~~t~~~~i~~i~~--a~ 192 (348)
T PRK08445 122 IT-----IHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAP--KKLDSDRWLEVHRQ--AH 192 (348)
T ss_pred cE-----EEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCC--CCCCHHHHHHHHHH--HH
Confidence 32 22112 233 246777877773333 36788999999998875 34566777888886 57
Q ss_pred hCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011838 363 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397 (476)
Q Consensus 363 ~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 397 (476)
+.|.++.. .+|-|..++.++..+.+..++++..
T Consensus 193 ~~Gi~~~s--g~i~G~~Et~edr~~~l~~lreLq~ 225 (348)
T PRK08445 193 LIGMKSTA--TMMFGTVENDEEIIEHWERIRDLQD 225 (348)
T ss_pred HcCCeeee--EEEecCCCCHHHHHHHHHHHHHHHH
Confidence 77876654 4555667888999999888887753
No 128
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.79 E-value=2e-07 Score=95.73 Aligned_cols=192 Identities=14% Similarity=0.209 Sum_probs=118.6
Q ss_pred EEecCCCCCCCCCCCCCCCC-C--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCH-------------
Q 011838 218 VSSQVGCAMNCQFCYTGRMG-L--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNV------------- 280 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg~~g-~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~------------- 280 (476)
|..|.+|+.+|.||.-.... . ...++++||++++..+.+ .+++.|.++| |+ |-..+
T Consensus 8 i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~------~G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 8 IPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAA------AGCTEALFTF-GEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred eccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCccccHHHHHHHHHhcCCc
Confidence 33489999999999965432 2 236899999999987654 3677888998 76 43322
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC-CCCCCcHHHHHHH
Q 011838 281 ---ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMP-INRKYKLGLLIET 355 (476)
Q Consensus 281 ---d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p-~~~~~~le~vlea 355 (476)
+.+.++++.+.++.++. ..++...+. +.+..|.+.+. .+.+++++.++..+..+.. ...+-..++.++.
T Consensus 81 ~~~~~~~~~~~~i~~e~~~~-----~~~~~g~lt~e~l~~Lk~aG~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~ 154 (322)
T TIGR03550 81 STLEYLRELCELALEETGLL-----PHTNPGVMSRDELARLKPVNA-SMGLMLETTSERLCKGEAHYGSPGKDPAVRLET 154 (322)
T ss_pred cHHHHHHHHHHHHHHhcCCc-----cccCCCCCCHHHHHHHHhhCC-CCCcchhhhccccccccccCCCCCCCHHHHHHH
Confidence 45666666555444542 444443344 45667776651 2345566666553322211 1111134677888
Q ss_pred HHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-----C-eEEEEeccCCCCCCC---CCCcHHHHHHHHHH
Q 011838 356 LREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP-----C-KINLISFNPHCGSQF---TPTTDEKMIEFRNI 426 (476)
Q Consensus 356 l~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~-----~-~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~ 426 (476)
++. ..+.|.++. ..+|=|..+++++..+.+..+++++ . .+-+.+|.|.+++++ ++++.++..+....
T Consensus 155 i~~--a~~~Gi~~~--s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv 230 (322)
T TIGR03550 155 IED--AGRLKIPFT--TGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAV 230 (322)
T ss_pred HHH--HHHcCCCcc--ceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHH
Confidence 886 466776644 3455577899999999999988774 2 344456888877643 44566665554433
No 129
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.73 E-value=1.6e-06 Score=89.00 Aligned_cols=202 Identities=19% Similarity=0.301 Sum_probs=136.3
Q ss_pred cCCCCCCCCCCCCCC---CCC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc--ccCCHHHHHHHHHHHHHh
Q 011838 221 QVGCAMNCQFCYTGR---MGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE--PLHNVENVIKAANIMVHE 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~---~g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE--PLLn~d~V~~ai~~l~~~ 293 (476)
+.+|+-+|.||.... .+. ..-++.+||++....+.+. +-.+-+..++ |+ + -..+.|.++++.+.+.
T Consensus 58 tg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~-----Ga~r~c~~aa-gr~~~-~~~~~i~~~v~~Vk~~ 130 (335)
T COG0502 58 TGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA-----GATRFCMGAA-GRGPG-RDMEEVVEAIKAVKEE 130 (335)
T ss_pred cCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHc-----CCceEEEEEe-ccCCC-ccHHHHHHHHHHHHHh
Confidence 466899999999543 222 2458899999999887542 2144444454 55 3 4567899999988778
Q ss_pred cCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.|+. +++ |-|++ +.+++|.+.+.....--|++ +++.|.+|.+.. ++++-++.++. .++.|..+-
T Consensus 131 ~~le-----~c~-slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~---t~edR~~tl~~--vk~~Gi~vc-- 196 (335)
T COG0502 131 LGLE-----VCA-SLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTR---TYEDRLNTLEN--VREAGIEVC-- 196 (335)
T ss_pred cCcH-----Hhh-ccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCC---CHHHHHHHHHH--HHHcCCccc--
Confidence 8886 444 66874 57889998883333466778 899999999853 68999999996 577776554
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC-C-eEEEEeccCCCCCCCC---CCcHHHHHHHHHHHHhCCCeEEEccCCCCc
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIP-C-KINLISFNPHCGSQFT---PTTDEKMIEFRNILAGAGCTVFLRLSRGDD 443 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~-~-~VnLIp~nP~~~~~~~---~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~d 443 (476)
.-.|=|+..+.+|--+++..|+.++ . .|-+..++|.+|+++. +.+.-+..+.....+=.=-...||.+-|++
T Consensus 197 sGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~ 273 (335)
T COG0502 197 SGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRE 273 (335)
T ss_pred cceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcc
Confidence 3456688899988777777777775 2 5666678899998764 444433333333333322335566655543
No 130
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.73 E-value=2.3e-06 Score=91.95 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=140.0
Q ss_pred cCCCCCCCCCCCCCCC-C-C-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-c-cCCHHHHHHHHHHHHHh--
Q 011838 221 QVGCAMNCQFCYTGRM-G-L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-P-LHNVENVIKAANIMVHE-- 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~-g-~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-P-LLn~d~V~~ai~~l~~~-- 293 (476)
+..|.-+|.||.-... + . ...++.+||++++..+.+ .+++.+.+.| || | -...+.+.++++.+.+.
T Consensus 91 SN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~------~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~ 163 (469)
T PRK09613 91 SNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED------MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKH 163 (469)
T ss_pred cCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 5899999999986432 1 1 245899999999987643 3677888876 65 3 33478888888877542
Q ss_pred -cCCCCCCCeEEEEeCCc--hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EE
Q 011838 294 -QGLHFSPRKVTVSTSGL--VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VL 369 (476)
Q Consensus 294 -~Gl~i~~r~ItVsTNG~--~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ 369 (476)
.|. | +.++|+- |. .+.+++|.+.+-..+.+-..+.+.+++.++.|...+.+++.-+++++. +.+.|.+ |.
T Consensus 164 ~~g~-i--~~v~ini-g~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~r--A~~aGi~~Vg 237 (469)
T PRK09613 164 GNGE-I--RRVNVNI-APTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDR--AMEAGIDDVG 237 (469)
T ss_pred ccCc-c--eeeEEEe-ecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHH--HHHcCCCeeC
Confidence 221 1 2455542 43 368899998884455578888899999999987677889999999997 5778876 66
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcC----C--Ce-EEEEeccCCCCCCC-C---CCcHHHHHHHHHHHH----hCCCeE
Q 011838 370 FEYVMLAGVNDSFDDAKRLIGLVQGI----P--CK-INLISFNPHCGSQF-T---PTTDEKMIEFRNILA----GAGCTV 434 (476)
Q Consensus 370 ieyvLI~GvNDs~ed~~~La~ll~~l----~--~~-VnLIp~nP~~~~~~-~---~ps~e~i~~f~~~L~----~~Gi~v 434 (476)
+- +|=|+.++.+|.-.++..++.+ + .+ |.+-.+.|.+|+++ . +.+.+++.++...++ ..|+.+
T Consensus 238 ~G--~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~l 315 (469)
T PRK09613 238 IG--VLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMIL 315 (469)
T ss_pred eE--EEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCcee
Confidence 54 3457888887777776665544 2 22 44334788888765 2 246677766665554 457777
Q ss_pred EEccC
Q 011838 435 FLRLS 439 (476)
Q Consensus 435 ~vR~~ 439 (476)
+-|.+
T Consensus 316 StRE~ 320 (469)
T PRK09613 316 STRES 320 (469)
T ss_pred ecCCC
Confidence 66655
No 131
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.72 E-value=2.6e-07 Score=96.65 Aligned_cols=152 Identities=21% Similarity=0.359 Sum_probs=104.6
Q ss_pred CCC--CCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeC
Q 011838 231 CYT--GRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 308 (476)
Q Consensus 231 C~t--g~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTN 308 (476)
|+- ...++.-..+.++|-+.+..++.. +..+...|.|+| |||++. +.+.++++ ++++.|+. +|.+.||
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e---~p~~~~aIq~tG-GEPTvr-~DL~eiv~-~a~e~g~~----hVqinTn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKE---HPVGANAVQFTG-GEPTLR-DDLIEIIK-IAREEGYD----HVQLNTN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhc---CCCCCceeEecC-CCccch-hhHHHHHH-HHhhcCcc----EEEEccC
Confidence 653 344555567776666655554432 113457899999 999999 56899998 67888985 8999999
Q ss_pred Cch----HH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEEEeCCCCCCH
Q 011838 309 GLV----PQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVMLAGVNDSF 382 (476)
Q Consensus 309 G~~----p~-i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyvLI~GvNDs~ 382 (476)
|+. +. .++|.+.+...|.+|+|+.+++.+.+. -+.+...+++++ +.|.. +.+--++++|+||.
T Consensus 148 GirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r-----~~g~~svVLVptl~rgvNd~- 216 (475)
T COG1964 148 GIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCR-----KAGLPSVVLVPTLIRGVNDH- 216 (475)
T ss_pred ceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHH-----hcCCCcEEEEeehhcccChH-
Confidence 983 33 456667777788999999999876544 233444444444 34533 66666788999986
Q ss_pred HHHHHHHHHHhc-CCC--eEEEEec
Q 011838 383 DDAKRLIGLVQG-IPC--KINLISF 404 (476)
Q Consensus 383 ed~~~La~ll~~-l~~--~VnLIp~ 404 (476)
++..++++... +.+ .||+.|+
T Consensus 217 -~lG~iirfa~~n~dvVrgVnfQPV 240 (475)
T COG1964 217 -ELGAIIRFALNNIDVVRGVNFQPV 240 (475)
T ss_pred -HHHHHHHHHHhccccccccceEEE
Confidence 68888888763 332 6777775
No 132
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.72 E-value=5.4e-07 Score=94.31 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=114.0
Q ss_pred cCCCCCCCCCCCCCCC-C--CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCC-HHHHHHHHHHHHHhc-
Q 011838 221 QVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHN-VENVIKAANIMVHEQ- 294 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~-g--~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn-~d~V~~ai~~l~~~~- 294 (476)
+..|+.+|.||+-... + ....++.+||++.+..+.+ .+++.|.++| | .|... .+.+.++++.+++..
T Consensus 67 Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~------~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~ 139 (371)
T PRK07360 67 TNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK------RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFP 139 (371)
T ss_pred chhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh------CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCC
Confidence 7999999999996542 1 1124899999999987654 3788899998 7 68776 788899999876542
Q ss_pred CCCCCCCeEEEE----------eCCch--HHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011838 295 GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 361 (476)
Q Consensus 295 Gl~i~~r~ItVs----------TNG~~--p~i~~L~~~~~~~L-aISLda~~de~r~~I~p~~~~~~le~vleal~~~l~ 361 (476)
+++ +... +.|.. +.+++|.+.+-..+ ..+-...+++.|+++.|. +-+.++-++.++. +
T Consensus 140 ~i~-----i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~--~~s~~~~l~~i~~--a 210 (371)
T PRK07360 140 DIH-----LHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPE--KIKTAEWIEIVKT--A 210 (371)
T ss_pred Ccc-----eeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCC--CCCHHHHHHHHHH--H
Confidence 333 4433 45764 45788888773222 112223356777777764 3456777888885 5
Q ss_pred hhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEecc
Q 011838 362 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN 405 (476)
Q Consensus 362 ~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLIp~n 405 (476)
.+.|.++ ...+|-|...+.+|..+.+.+++++.. ...+||+|
T Consensus 211 ~~~Gl~~--~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 211 HKLGLPT--TSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred HHcCCCc--eeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 6777665 445666777899999999999988753 23456654
No 133
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.65 E-value=5.6e-07 Score=93.70 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=111.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC
Q 011838 267 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 344 (476)
Q Consensus 267 nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~ 344 (476)
.+..+|.|+++-.++ +.+..+... .++..-.-|-..++.||.. ....++++.+-.-|.+|+|++++++|+++|.-.
T Consensus 81 ~~~~~~~~d~~c~p~-le~~~~r~~-~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~ 158 (414)
T COG1625 81 GAKQCGNGDTFCYPD-LEPRGRRAR-LYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNP 158 (414)
T ss_pred ceeecCCCCcccCcc-hhhhhhHHH-hhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCC
Confidence 677888788877653 566555442 3331111233566777763 356778888755678999999999999999532
Q ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC-----CCCCCcHH
Q 011838 345 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS-----QFTPTTDE 418 (476)
Q Consensus 345 ~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~-----~~~~ps~e 418 (476)
.-+++++.++. .......+....|++||+||- +++.+..+-|...+. .+.++.+-|.+-. ..+++.++
T Consensus 159 ---~A~~~le~L~~--f~~~~~~v~a~iVl~PGvNdg-e~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~ 232 (414)
T COG1625 159 ---NAEQLLELLRR--FAERCIEVHAQIVLCPGVNDG-EELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPH 232 (414)
T ss_pred ---cHHHHHHHHHH--HHHhhhheeeEEEEcCCcCcH-HHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHH
Confidence 34679999996 355666899999999999985 688888888887754 4455533344321 35667788
Q ss_pred HHHHHHHHHH----hCC-CeEEE
Q 011838 419 KMIEFRNILA----GAG-CTVFL 436 (476)
Q Consensus 419 ~i~~f~~~L~----~~G-i~v~v 436 (476)
+++.|+++.+ +.| +.|+-
T Consensus 233 ~l~~~k~i~re~~~E~~~~~V~g 255 (414)
T COG1625 233 ELEEFKEIVREFDRELGSIRVTG 255 (414)
T ss_pred HHHHHHHHHHHHHHhcCceEEeC
Confidence 8988887654 567 66543
No 134
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=98.65 E-value=5.8e-06 Score=88.33 Aligned_cols=195 Identities=11% Similarity=0.157 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCCCCccCC---CHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCC
Q 011838 224 CAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 300 (476)
Q Consensus 224 Cnl~C~FC~tg~~g~~r~l---t~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~ 300 (476)
|+.+|.||.-......... -.+.+.+++..+.+ .+..+..|.|-| |-|++..+.+.++++.+.+..++
T Consensus 62 C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~----~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~~~f~i---- 132 (433)
T PRK08629 62 CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKE----LGYDFESMYVGG-GTTTILEDELAKTLELAKKLFSI---- 132 (433)
T ss_pred ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHh----cCCceEEEEECC-CccccCHHHHHHHHHHHHHhCCC----
Confidence 9999999997653222111 23455555544322 124577676655 99999878788888766554444
Q ss_pred CeEEEEeCC--chHH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEE-eC
Q 011838 301 RKVTVSTSG--LVPQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM-LA 376 (476)
Q Consensus 301 r~ItVsTNG--~~p~-i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvL-I~ 376 (476)
..+++++|= +.++ ++.+.+. --.|.|.+.+.++++.+.+....+....+++++.++. .......+.+-.+. +|
T Consensus 133 ~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~--~~~~~~~v~~DlI~GlP 209 (433)
T PRK08629 133 KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMK--AKGLFPIINVDLIFNFP 209 (433)
T ss_pred ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHH--HhccCCeEEEEEEccCC
Confidence 358888873 3343 4444333 3367899999999987765332222234556666664 22222334433222 35
Q ss_pred CCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC------CCCCcHHHHHHHHHHH---HhCCCe
Q 011838 377 GVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ------FTPTTDEKMIEFRNIL---AGAGCT 433 (476)
Q Consensus 377 GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~------~~~ps~e~i~~f~~~L---~~~Gi~ 433 (476)
| ++.+++.+-++++..++ .+|.+.|+...+++. ...|+.+....+.... .+ |+.
T Consensus 210 g--qT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~ 273 (433)
T PRK08629 210 G--QTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYN 273 (433)
T ss_pred C--CCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCe
Confidence 5 67899999999998886 489988876555432 3345655544444332 33 764
No 135
>PRK08444 hypothetical protein; Provisional
Probab=98.64 E-value=2.2e-06 Score=89.18 Aligned_cols=190 Identities=16% Similarity=0.128 Sum_probs=120.3
Q ss_pred ecCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhc-C
Q 011838 220 SQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ-G 295 (476)
Q Consensus 220 sq~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~-G 295 (476)
.+..|..+|.||+-... .....++.+||++.+..+.+ .+++.|.+.|.+-|-..++.+.++++.+++.. +
T Consensus 55 ~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~------~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~ 128 (353)
T PRK08444 55 PTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK------RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPN 128 (353)
T ss_pred cccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCC
Confidence 37999999999996532 11235899999999987654 47888989985677777888999999887553 3
Q ss_pred CCCCCCeEEEE----------eCCc-h-HHHHHHHhcCCeEEEE-eeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011838 296 LHFSPRKVTVS----------TSGL-V-PQLKQFLNESNCALAV-SLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 362 (476)
Q Consensus 296 l~i~~r~ItVs----------TNG~-~-p~i~~L~~~~~~~LaI-SLda~~de~r~~I~p~~~~~~le~vleal~~~l~~ 362 (476)
++ +..- ..|. . +.+.+|.+.+...+.- +..-.+++.|.+|.|. +.+-++.++.++. +.
T Consensus 129 i~-----i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~--k~~~~~~~~i~~~--a~ 199 (353)
T PRK08444 129 LH-----VKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKG--KVSSERWLEIHKY--WH 199 (353)
T ss_pred ce-----EeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCC--CCCHHHHHHHHHH--HH
Confidence 43 5541 2344 3 4567777766222111 1222378888999874 3345666666664 45
Q ss_pred hCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC---eE-EEEec--cCCCCCC---CCCCcHHHHHHHHHHH
Q 011838 363 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC---KI-NLISF--NPHCGSQ---FTPTTDEKMIEFRNIL 427 (476)
Q Consensus 363 ~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~---~V-nLIp~--nP~~~~~---~~~ps~e~i~~f~~~L 427 (476)
+.|.++. ..+|=|.-++.+|.-+.+..++++.. .+ .+||+ .|. +++ .++++.++..+...+.
T Consensus 200 ~~Gi~~~--sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~-~t~l~~~~~~~~~e~Lr~iAi~ 270 (353)
T PRK08444 200 KKGKMSN--ATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRE-NNYLKVEKFPSSQEILKTIAIS 270 (353)
T ss_pred HcCCCcc--ceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCC-CCcCCCCCCCCHHHHHHHHHHH
Confidence 6676654 45566666888888888888887753 22 24543 332 222 3456666655554433
No 136
>PRK00955 hypothetical protein; Provisional
Probab=98.59 E-value=2.4e-06 Score=94.08 Aligned_cols=184 Identities=17% Similarity=0.290 Sum_probs=112.3
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEE---------EEecCC-------
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GL-KRHLTAAEIVEQAVFARRLLSSEVGSITNV---------VFMGMG------- 274 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nI---------vf~GmG------- 274 (476)
.....|.++.||+.+|.||..+.. |. .+..+.++|++++..+.+. .+.+.+ .+.|+.
T Consensus 291 ~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~-----~gfkg~I~DlgGptan~Yg~~c~~~~~~ 365 (620)
T PRK00955 291 EVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEM-----PDFKGYIHDVGGPTANFRKMACKKQLKC 365 (620)
T ss_pred eEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhc-----cCCeEEEEeCCCCCcccccccccccccc
Confidence 456778889999999999987753 43 3788999999999876542 122222 122210
Q ss_pred -----------ccc----CCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc-----h-----HHHHHHHhcC-CeEEEEe
Q 011838 275 -----------EPL----HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-----V-----PQLKQFLNES-NCALAVS 328 (476)
Q Consensus 275 -----------EPL----Ln~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~-----~-----p~i~~L~~~~-~~~LaIS 328 (476)
+|- .+...+.++++.+.+-.|+. ++.|+ +|+ . ..+++|++.. .-.|.|.
T Consensus 366 ~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvk----rv~is-SGIR~D~l~~~~~~~~l~eL~~~~vsg~L~Ia 440 (620)
T PRK00955 366 GACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVK----KVFIR-SGIRYDYLLHDKNDEFFEELCEHHVSGQLKVA 440 (620)
T ss_pred ccccccccccCccccccCcChHHHHHHHHHHhccCCce----EEEee-cceeccccccCCcHHHHHHHHHHhcCCCceeC
Confidence 011 11235777777775445553 45554 442 1 1456676653 2246799
Q ss_pred eCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE-EEEe--CCCCCCHHHHHHHHHHHhcCCC-eEEEEec
Q 011838 329 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE-YVML--AGVNDSFDDAKRLIGLVQGIPC-KINLISF 404 (476)
Q Consensus 329 Lda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie-yvLI--~GvNDs~ed~~~La~ll~~l~~-~VnLIp~ 404 (476)
+.+.+++.-+.... .....++++++.+++ +..+.|.+..+. |+++ || ++++++.++++|+++++. .+++.+|
T Consensus 441 pESgSd~VLk~M~K-~~~~~~~~f~~~~~~-i~~~~G~~~~I~~yfIvGfPG--ETeEDf~et~eflkel~~~~~qV~~f 516 (620)
T PRK00955 441 PEHISDRVLKLMGK-PSREVYDKFVKKFDR-INKKLGKKQYLVPYLMSSHPG--STLEDAIELAEYTKDLGYQPEQVQDF 516 (620)
T ss_pred cCCCChHHHHHhCC-CCHHHHHHHHHHHHH-hhhhcCCCccEEEEEEEECCC--CCHHHHHHHHHHHHHcCCCcceeeee
Confidence 99999988764432 111123445555555 344555543333 4443 55 889999999999998874 6677788
Q ss_pred cCCCCC
Q 011838 405 NPHCGS 410 (476)
Q Consensus 405 nP~~~~ 410 (476)
.|.+++
T Consensus 517 TP~PGT 522 (620)
T PRK00955 517 YPTPGT 522 (620)
T ss_pred ecCCCc
Confidence 888774
No 137
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.57 E-value=2.6e-06 Score=90.47 Aligned_cols=189 Identities=16% Similarity=0.296 Sum_probs=113.2
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCC-CeEEEEEecCCcccCCHHHHHHHHHHHHHh
Q 011838 215 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-SITNVVFMGMGEPLHNVENVIKAANIMVHE 293 (476)
Q Consensus 215 tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~-~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~ 293 (476)
.+.|.++.||+.+|.||..+.....|..+.+.+++++....+....... -..++.+.| +..+.+ +...+.+.....+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~-~~~~~~-~~~~~~l~~~~~~ 276 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYG-SPALND-EKRFELLSLELIE 276 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecC-Cccccc-hhhcccchHHHHH
Confidence 5778889999999999999875324667888888888765443322111 123343333 332222 2333333211122
Q ss_pred cCCC-CCCCeEEEE---eCCch-HHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHH-HHHHHHHhhCCC
Q 011838 294 QGLH-FSPRKVTVS---TSGLV-PQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE-TLREELHFKNNY 366 (476)
Q Consensus 294 ~Gl~-i~~r~ItVs---TNG~~-p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vle-al~~~l~~~~g~ 366 (476)
.++. ....++++. ++=.. +.+.++++.. ...+.+.+.+.+++..+.++ +..+.+++.+ +++. ..+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~~~~a~~~--~~~~~~ 351 (490)
T COG1032 277 RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEVLEEAVKI--AKEHGL 351 (490)
T ss_pred HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh---CCCChHHHHHHHHHH--HHhCCc
Confidence 2221 001123332 11112 4455555554 46788999999999998865 4456788885 7774 567777
Q ss_pred eEEEEEEE-eCCCCCCHHHHHHH---HHHHhcCCCe--EEEEeccCCCCCCC
Q 011838 367 KVLFEYVM-LAGVNDSFDDAKRL---IGLVQGIPCK--INLISFNPHCGSQF 412 (476)
Q Consensus 367 ~V~ieyvL-I~GvNDs~ed~~~L---a~ll~~l~~~--VnLIp~nP~~~~~~ 412 (476)
++.+-+++ +|| ++.+++++. .++++.++.. +...+|.|.+++.+
T Consensus 352 ~~~~~~i~G~pg--et~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~ 401 (490)
T COG1032 352 RVKLYFIVGLPG--ETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPL 401 (490)
T ss_pred eeeEEEEEcCCC--CCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCch
Confidence 77666555 577 445666665 7777777654 78888999888754
No 138
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.55 E-value=4.8e-06 Score=84.68 Aligned_cols=166 Identities=17% Similarity=0.294 Sum_probs=111.5
Q ss_pred EEecCCCCCCCCCCCCCCCCCc-----cCCCHHH-HHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHH---HHHHHHH
Q 011838 218 VSSQVGCAMNCQFCYTGRMGLK-----RHLTAAE-IVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE---NVIKAAN 288 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg~~g~~-----r~lt~~E-Iveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d---~V~~ai~ 288 (476)
++.-.||..+|.||+-..+... ..+.+++ +++.+..- +...+.+...|.+..+-+|..-.+ .+.+.+.
T Consensus 33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~e---l~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERE---LRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred cCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHH---HhhccCCceEEEEecCCCCCCcchHHHHHHHHHH
Confidence 3446999999999996543221 2345555 66665443 211123556676777789998632 3333333
Q ss_pred HHHHhcCCCCCCCeEEEEeCCch-----HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011838 289 IMVHEQGLHFSPRKVTVSTSGLV-----PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 363 (476)
Q Consensus 289 ~l~~~~Gl~i~~r~ItVsTNG~~-----p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~ 363 (476)
.+....|.. +.|.|=..+ +.+.++.....+.+++|+...++++++.+=|. .-+.++=+++++. +.+
T Consensus 110 ei~~~~~~~-----v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~~--l~e 180 (297)
T COG1533 110 EILLKYGFP-----VSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALKE--LSE 180 (297)
T ss_pred HHHHHcCCc-----EEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHHH--HHH
Confidence 344567775 999998752 33444445556788999999988888777664 3468999999998 478
Q ss_pred CCCeEEEEE-EEeCCCCCCHHHHHHHHHHHhcCCC
Q 011838 364 NNYKVLFEY-VMLAGVNDSFDDAKRLIGLVQGIPC 397 (476)
Q Consensus 364 ~g~~V~iey-vLI~GvNDs~ed~~~La~ll~~l~~ 397 (476)
.|.++++.. .+||++|| ++++++...+...++
T Consensus 181 aGi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~ 213 (297)
T COG1533 181 AGIPVGLFVAPIIPGLND--EELERILEAAAEAGA 213 (297)
T ss_pred CCCeEEEEEecccCCCCh--HHHHHHHHHHHHcCC
Confidence 999988765 57899998 788888876665544
No 139
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.55 E-value=6.5e-06 Score=87.08 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=68.2
Q ss_pred EEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCH
Q 011838 303 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 382 (476)
Q Consensus 303 ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ 382 (476)
||+ ||=....++++++..---|.||+|+.+++.|.++++.. ..+++++.++. ..+.+..+....|++||+||.
T Consensus 121 iTL-TNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~---~a~~il~~l~~--l~~~~I~~h~qiVlcPGiNDg- 193 (433)
T TIGR03279 121 LTL-TNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNP---RAGLILEQLKW--FQERRLQLHAQVVVCPGINDG- 193 (433)
T ss_pred eee-cCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCC---CHHHHHHHHHH--HHHcCCeEEEEEEEcCCcCCH-
Confidence 554 77666778888877633356999999999999999743 36899999997 466789999999999999996
Q ss_pred HHHHHHHHHHhcC
Q 011838 383 DDAKRLIGLVQGI 395 (476)
Q Consensus 383 ed~~~La~ll~~l 395 (476)
+++++.++.|..+
T Consensus 194 ~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 194 KHLERTLRDLAQF 206 (433)
T ss_pred HHHHHHHHHHHhh
Confidence 5677777777655
No 140
>PRK05927 hypothetical protein; Provisional
Probab=98.44 E-value=9.1e-06 Score=84.54 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=121.1
Q ss_pred cCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCHHHHHHHHHHHHHhc-C
Q 011838 221 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQ-G 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~d~V~~ai~~l~~~~-G 295 (476)
+..|+.+|.||+-.... ....++.+||++.+..+.+ .+++.|.|.| |+ |-.-.+.+.++++.+++.. +
T Consensus 52 Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~------~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~p~ 124 (350)
T PRK05927 52 TNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS------AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEFPS 124 (350)
T ss_pred chhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH------CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 68999999999975421 1136899999999987654 3678899998 87 4455778888888876653 3
Q ss_pred CCCCCCe-EE----EEeCCch--HHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe
Q 011838 296 LHFSPRK-VT----VSTSGLV--PQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 367 (476)
Q Consensus 296 l~i~~r~-It----VsTNG~~--p~i~~L~~~~~~~L-aISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~ 367 (476)
+.+.... +. -.+.|+. +.+.+|.+.+...+ ..-+...+++.|+.+.|. +++.++=++.++. +.+.|.+
T Consensus 125 l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~--k~~~~~rl~~i~~--A~~lGi~ 200 (350)
T PRK05927 125 LHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPK--KMGPDGWIQFHKL--AHRLGFR 200 (350)
T ss_pred CcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCC--CCCHHHHHHHHHH--HHHcCCC
Confidence 4310000 00 1235764 46777877762221 124555678888887763 4456777888885 4666665
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCC----CeEEEEeccCCC-CCCC----C-CCcHHHHHHHHHHH
Q 011838 368 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP----CKINLISFNPHC-GSQF----T-PTTDEKMIEFRNIL 427 (476)
Q Consensus 368 V~ieyvLI~GvNDs~ed~~~La~ll~~l~----~~VnLIp~nP~~-~~~~----~-~ps~e~i~~f~~~L 427 (476)
+. ..+|=|.-++.+|..+.+..++++. ....+||+.+.+ ++.+ . +++.++..+.....
T Consensus 201 ~~--sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~ 268 (350)
T PRK05927 201 ST--ATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVA 268 (350)
T ss_pred cC--ceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHH
Confidence 44 4455566778888777777777663 234556654332 2221 1 46666666554444
No 141
>PRK01254 hypothetical protein; Provisional
Probab=98.43 E-value=1.8e-05 Score=87.34 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=115.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCC-CCC-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEE---------EecC--Cc-----
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGR-MGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVV---------FMGM--GE----- 275 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~-~g~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIv---------f~Gm--GE----- 275 (476)
....|.+..||+.+|.||..+. .|. .+..+.++|++++..+.+.. .+.+.+. +.|+ .+
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~----pGfKgii~DLgGptaN~YG~~c~d~~~~~ 447 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKV----PGFTGVISDLGGPTANMYRLRCKSPRAEQ 447 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCcccccccccccccccc
Confidence 4567778999999999999874 333 36789999999998765321 2444444 3332 11
Q ss_pred -------------ccC--CHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc----h---H-HHHHHHhcC-CeEEEEeeCC
Q 011838 276 -------------PLH--NVENVIKAANIMVHEQGLHFSPRKVTVSTSGL----V---P-QLKQFLNES-NCALAVSLNA 331 (476)
Q Consensus 276 -------------PLL--n~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~----~---p-~i~~L~~~~-~~~LaISLda 331 (476)
+-+ +...+.++++.+.+-.|+. +|.|.+ |+ . + -++.+.+.. .-.|-|-+.+
T Consensus 448 ~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVK----kVrI~S-giR~Dl~l~d~elIeel~~~hV~g~LkVppEH 522 (707)
T PRK01254 448 TCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIK----KILIAS-GVRYDLAVEDPRYVKELVTHHVGGYLKIAPEH 522 (707)
T ss_pred ccccccccCcccccccCCCHHHHHHHHHHHHhCCCce----EEEEEc-CCCccccccCHHHHHHHHHhCCcccccccccc
Confidence 111 2235777787776545663 455543 43 1 2 344555533 2245677888
Q ss_pred CCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCCeE-EEEeccCCC
Q 011838 332 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPCKI-NLISFNPHC 408 (476)
Q Consensus 332 ~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~~V-nLIp~nP~~ 408 (476)
.+++.-+ .|.-...+.+++..+.+++ +.++.+..+.+...+|-| -+++++|+.+|++|+++++..+ .+.-|.|.+
T Consensus 523 ~Sd~VLk-~M~Kp~~~~~e~F~e~f~r-irk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 523 TEEGPLS-KMMKPGMGSYDRFKELFDK-YSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred CCHHHHH-HhCCCCcccHHHHHHHHHH-HHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 8888754 4543334677888888887 566667656655445533 4588999999999999886422 223355655
No 142
>PTZ00413 lipoate synthase; Provisional
Probab=98.38 E-value=9.5e-05 Score=77.07 Aligned_cols=197 Identities=10% Similarity=0.168 Sum_probs=131.1
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-CCcccCC--HHHHHHHHHHHHHhc-CC
Q 011838 221 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-MGEPLHN--VENVIKAANIMVHEQ-GL 296 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-mGEPLLn--~d~V~~ai~~l~~~~-Gl 296 (476)
...|.-+|.||+.........++++|+.+....+.+ .+++.+|++. .++.+-. .+.+.+.++.+.+.. ++
T Consensus 156 G~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~------~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~ 229 (398)
T PTZ00413 156 GDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAE------MGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPEL 229 (398)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCC
Confidence 478999999999765332356899999988887654 3566666665 2233433 356777788775432 44
Q ss_pred CCCCCeEEEEe---CCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhC-CCeEEEEE
Q 011838 297 HFSPRKVTVST---SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NYKVLFEY 372 (476)
Q Consensus 297 ~i~~r~ItVsT---NG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~-g~~V~iey 372 (476)
. |.+++ -|..+.+++|.+.+...+.--|+. .+..+.+++.. ..++++-++.|+. . ++. ...+..-.
T Consensus 230 ~-----IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~--~atYe~sLe~Lr~-A-Ke~f~~gi~tcS 299 (398)
T PTZ00413 230 L-----LEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDR--RASYRQSLKVLEH-V-KEFTNGAMLTKS 299 (398)
T ss_pred e-----EEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccC--cCCHHHHHHHHHH-H-HHHhcCCceEee
Confidence 3 66665 344567888888885555666666 36677777621 2468899999986 2 332 33455544
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEE-ec-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPCKINLI-SF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~~VnLI-p~-nP~~~~-~-~~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
-+|=|..++.+++.++++.|+.+++.+-.+ .| .|.... + .+-.++++.+.+++...+.|+.
T Consensus 300 GiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~ 364 (398)
T PTZ00413 300 SIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFL 364 (398)
T ss_pred eeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCc
Confidence 566678899999999999999987644333 33 454321 1 1234578899999999999986
No 143
>PRK05926 hypothetical protein; Provisional
Probab=98.30 E-value=2.7e-05 Score=81.59 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=108.4
Q ss_pred cCCCCCCCCCCCCCCC-C--CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc-cCCHHHHHHHHHHHHHhc-C
Q 011838 221 QVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP-LHNVENVIKAANIMVHEQ-G 295 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~-g--~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP-LLn~d~V~~ai~~l~~~~-G 295 (476)
+..|..+|.||+-.+. + ....++++||++.+..+ + .+++.|.+.| |+. -+.++.+.++++.+.+.. +
T Consensus 75 Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~------~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~ 146 (370)
T PRK05926 75 TNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P------SPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPD 146 (370)
T ss_pred CCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h------cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC
Confidence 7999999999995432 1 12358999999999875 2 2678888888 764 346788888888876553 3
Q ss_pred CCCCCCeEEEEeC----------Cc-hH-HHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011838 296 LHFSPRKVTVSTS----------GL-VP-QLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 362 (476)
Q Consensus 296 l~i~~r~ItVsTN----------G~-~p-~i~~L~~~~~~~La-ISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~ 362 (476)
++ +...|- |. .+ .+++|.+.+-..+. -.....+++.|+.+.| ++.+.++-++.++. +.
T Consensus 147 i~-----i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p--~~~t~~e~l~~i~~--a~ 217 (370)
T PRK05926 147 LH-----IKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAP--GRLSSQGFLEIHKT--AH 217 (370)
T ss_pred ee-----EEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCC--CCCCHHHHHHHHHH--HH
Confidence 43 443331 22 23 46777776622221 1244457889998887 34466888899986 57
Q ss_pred hCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011838 363 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397 (476)
Q Consensus 363 ~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 397 (476)
+.|.++..- +|=|..++.+|.-+.+..+++++.
T Consensus 218 ~~Gi~~~sg--mi~G~gEt~edrv~~l~~Lr~Lq~ 250 (370)
T PRK05926 218 SLGIPSNAT--MLCYHRETPEDIVTHMSKLRALQD 250 (370)
T ss_pred HcCCcccCc--eEEeCCCCHHHHHHHHHHHHhcCC
Confidence 788777655 555666889999888888888853
No 144
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.18 E-value=0.00015 Score=83.18 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=120.7
Q ss_pred EecCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCHHHHHHHHHHHHHhc
Q 011838 219 SSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQ 294 (476)
Q Consensus 219 Ssq~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~d~V~~ai~~l~~~~ 294 (476)
..+..|..+|.||+-.+.. -...++.+||++++.++.+ .+++.|.+.| |+ |-+..+.+.++++.+++..
T Consensus 531 n~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~------~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~ 603 (843)
T PRK09234 531 NFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV------AGATEVCMQG-GIHPELPGTGYADLVRAVKARV 603 (843)
T ss_pred ecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhC
Confidence 3579999999999966431 2345899999999988754 4788899998 75 6566778888888776543
Q ss_pred -CCCCCCCeEEEE----------eCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011838 295 -GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 360 (476)
Q Consensus 295 -Gl~i~~r~ItVs----------TNG~~--p~i~~L~~~~~~~La-ISLda~~de~r~~I~p~~~~~~le~vleal~~~l 360 (476)
+++ |... +.|+. +.+++|.+.+...+- -+=.-.++++|..+.|. +.+.++-++.++.
T Consensus 604 p~i~-----i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~--k~~~~~wle~i~~-- 674 (843)
T PRK09234 604 PSMH-----VHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKG--KLPTAEWIEVVTT-- 674 (843)
T ss_pred CCee-----EEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCC--CCCHHHHHHHHHH--
Confidence 343 4333 24653 456777777622211 01112356777777763 3455666777775
Q ss_pred HhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEecc--CCCC-C-----CCCCCcHHHHHHHHHH
Q 011838 361 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN--PHCG-S-----QFTPTTDEKMIEFRNI 426 (476)
Q Consensus 361 ~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLIp~n--P~~~-~-----~~~~ps~e~i~~f~~~ 426 (476)
+.+.|.++. ..+|=|..++.+|..+...+++++.. ...+||+| |... . ..+.++.++..+....
T Consensus 675 Ah~lGi~~~--stmm~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAv 750 (843)
T PRK09234 675 AHEVGLRSS--STMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHAL 750 (843)
T ss_pred HHHcCCCcc--cceEEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHH
Confidence 456676654 34555677999999999999998853 24456643 2211 1 1244666665555443
No 145
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.16 E-value=0.00055 Score=72.92 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=123.8
Q ss_pred CCCCCCCCCCCCCCCCCccCCCHHH----HHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011838 222 VGCAMNCQFCYTGRMGLKRHLTAAE----IVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 296 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r~lt~~E----Iveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl 296 (476)
.=|.-.|.||.-......+.-..++ +.+++.......... ..+..|.| |.|.|++ +.+.+..++..+.+..+
T Consensus 42 PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~-~~v~ti~~-GGGTPslL~~~~l~~ll~~l~~~~~- 118 (416)
T COG0635 42 PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQ-REVKTIYF-GGGTPSLLSPEQLERLLKALRELFN- 118 (416)
T ss_pred ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCC-CeEEEEEE-CCCccccCCHHHHHHHHHHHHHhcc-
Confidence 5599999999976543333223333 334444333332111 24777765 5499988 56667677776665553
Q ss_pred CCCC-CeEEEEeC-Cch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC-eEEEE
Q 011838 297 HFSP-RKVTVSTS-GLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVLFE 371 (476)
Q Consensus 297 ~i~~-r~ItVsTN-G~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~-~V~ie 371 (476)
.+.. .-||+..| +.+ +.++.+.+.+--++++.+-+.+++..+.+- +..+.+++.+++.. ..+.+. .|.+-
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg---R~h~~~~~~~a~~~--~~~~g~~~in~D 193 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALG---RIHDEEEAKEAVEL--ARKAGFTSINID 193 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc---CCCCHHHHHHHHHH--HHHcCCCcEEEE
Confidence 1222 45999998 433 566777777744778888999999987653 55677888988886 344443 34444
Q ss_pred EEE-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCC-----C---CCCcH----HHHHHHHHHHHhCCCe
Q 011838 372 YVM-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ-----F---TPTTD----EKMIEFRNILAGAGCT 433 (476)
Q Consensus 372 yvL-I~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~-----~---~~ps~----e~i~~f~~~L~~~Gi~ 433 (476)
.+. +|+ ++.+++.+-.+.+..++ .+|.+..+.-.++.. . ..|+. +..+...+.|.++|+.
T Consensus 194 LIyglP~--QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 194 LIYGLPG--QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred eecCCCC--CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCc
Confidence 222 465 67788888777777775 477666654222221 1 13443 3445666888999984
No 146
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.14 E-value=0.0007 Score=74.00 Aligned_cols=196 Identities=13% Similarity=0.223 Sum_probs=119.6
Q ss_pred CCCCC-CCCCCCCCCC---------CC---------ccCCCHHHHHHHHHHHHHHhcccCCCeEE--EEEecCCcccCCH
Q 011838 222 VGCAM-NCQFCYTGRM---------GL---------KRHLTAAEIVEQAVFARRLLSSEVGSITN--VVFMGMGEPLHNV 280 (476)
Q Consensus 222 ~GCnl-~C~FC~tg~~---------g~---------~r~lt~~EIveqv~~~~~~l~~~~~~i~n--Ivf~GmGEPLLn~ 280 (476)
..|+. +|.||..|-. |. .+.-+..++.+.+.+... ++ ..++. +.||| |-++.-+
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~-~g---~~~~kvE~i~~G-GTft~l~ 150 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQ-IG---HPVDKVELIIMG-GTFPARD 150 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHH-hC---CCCceEEEEEEC-CCcccCC
Confidence 56995 7999998532 11 122344555555555443 22 23333 37999 9999853
Q ss_pred -HHHHHHHHHHHHhc-CCC--------------------CCCCeEEEEeCC--ch-HHHHHHHhcCCeEEEEeeCCCCHH
Q 011838 281 -ENVIKAANIMVHEQ-GLH--------------------FSPRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDE 335 (476)
Q Consensus 281 -d~V~~ai~~l~~~~-Gl~--------------------i~~r~ItVsTNG--~~-p~i~~L~~~~~~~LaISLda~~de 335 (476)
+....+++.+.+.. ++. .....++++|+= +. +.+..|.+.+-..+.+.+.+.+++
T Consensus 151 ~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~ 230 (522)
T TIGR01211 151 LDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYND 230 (522)
T ss_pred HHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHH
Confidence 33333444332211 100 001347788863 33 466777777766788999999999
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhc---CC-CeEEEEeccCCCCC
Q 011838 336 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQG---IP-CKINLISFNPHCGS 410 (476)
Q Consensus 336 ~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~---l~-~~VnLIp~nP~~~~ 410 (476)
+.+.+ ++.++.+++.++++. ++..|.++.+ -+|.|. +++.++..+.++.+.. ++ ..|.+.|..+.+++
T Consensus 231 VL~~i---nRght~~~v~~Ai~~--lr~~G~~v~~--~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT 303 (522)
T TIGR01211 231 ILERT---KRGHTVRDVVEATRL--LRDAGLKVVY--HIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGT 303 (522)
T ss_pred HHHHh---CCCCCHHHHHHHHHH--HHHcCCeEEE--EeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCC
Confidence 87654 567889999999996 5778876554 455553 3667766666665542 43 47888887666553
Q ss_pred ---------CCCCCcHHHHHHHHHHHHh
Q 011838 411 ---------QFTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 411 ---------~~~~ps~e~i~~f~~~L~~ 429 (476)
.|++++.+++.++...+.+
T Consensus 304 ~L~~~~~~G~y~p~t~ee~v~l~~~~~~ 331 (522)
T TIGR01211 304 ELYELWKRGEYKPYTTEEAVELIVEIKR 331 (522)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4778887776655544443
No 147
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.01 E-value=0.0003 Score=80.82 Aligned_cols=187 Identities=14% Similarity=0.254 Sum_probs=119.6
Q ss_pred cCCCCCCCCCCCCCCC-C--CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCC----------------H
Q 011838 221 QVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHN----------------V 280 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~-g--~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn----------------~ 280 (476)
+..|.-+|.||.-.+. + ....|+++||++.+....+ .+++.+.|+| || |-.. .
T Consensus 78 Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~------~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ 150 (843)
T PRK09234 78 TRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA------AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTL 150 (843)
T ss_pred CCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCccccccccccccccccccHH
Confidence 7999999999997542 1 2245899999999987654 3778899998 86 5432 4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhh------HcCCCCCCcHHHH
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNW------IMPINRKYKLGLL 352 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~------I~p~~~~~~le~v 352 (476)
+.+.++++.+.++.|+. +.++- |.+ +++.+|.+.+. ...+.+....+..+.+ +.| ++ ..++=
T Consensus 151 ey~~~~~~~ik~~~gl~-----p~i~~-G~ls~~E~~~Lk~~g~-s~gl~lEt~~~~l~~~~g~~h~~~P--~K-~~~~R 220 (843)
T PRK09234 151 DYVRAMAIRVLEETGLL-----PHLNP-GVMSWSELARLKPVAP-SMGMMLETTSRRLFEEKGGPHYGSP--DK-DPAVR 220 (843)
T ss_pred HHHHHHHHHHHHhcCCC-----ceeee-CCCCHHHHHHHHHhcC-cCCCCHHHHHHHHHHhhcccccCCC--CC-CHHHH
Confidence 77888888776666763 33332 543 57888877652 1234455544444422 112 12 23444
Q ss_pred HHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC------eEEEEeccCCCCCC---CCCCcHHHHHHH
Q 011838 353 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC------KINLISFNPHCGSQ---FTPTTDEKMIEF 423 (476)
Q Consensus 353 leal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~------~VnLIp~nP~~~~~---~~~ps~e~i~~f 423 (476)
++.++. ..+.|.+ +...+|=|+.++.+|.-+....++.+.. .|-+.+|.|.+++. .++++.+++.+.
T Consensus 221 L~ti~~--A~~lGi~--~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~ 296 (843)
T PRK09234 221 LRVLED--AGRLSVP--FTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLAT 296 (843)
T ss_pred HHHHHH--HHHcCCC--ccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHH
Confidence 777775 4667766 4445666788898888888888877631 24445577876664 456777777666
Q ss_pred HHHHH
Q 011838 424 RNILA 428 (476)
Q Consensus 424 ~~~L~ 428 (476)
....+
T Consensus 297 iAvaR 301 (843)
T PRK09234 297 IAVAR 301 (843)
T ss_pred HHHHH
Confidence 55543
No 148
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=97.88 E-value=0.0013 Score=63.84 Aligned_cols=192 Identities=15% Similarity=0.279 Sum_probs=114.8
Q ss_pred EEEEe-cCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCC--HHHHHHHHHHHH
Q 011838 216 VCVSS-QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHN--VENVIKAANIMV 291 (476)
Q Consensus 216 lCVSs-q~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn--~d~V~~ai~~l~ 291 (476)
.-||. ..-|.++|++|........-..|.++++....++.+ .+...+.++| | .|=.. .+...+.++.+.
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k------kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lk 84 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK------KGYEGCLLSG-GMDSRGKVPLWKFKDELKALK 84 (275)
T ss_pred ceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh------cCceeEEEeC-CcCCCCCccHHHHHHHHHHHH
Confidence 33443 467999999998765433334556777777666543 4788899999 6 22221 234455667677
Q ss_pred HhcCCCCCCCeEEEEeCCch-HH-HHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 292 HEQGLHFSPRKVTVSTSGLV-PQ-LKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 292 ~~~Gl~i~~r~ItVsTNG~~-p~-i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
++.|+. ++.. .|++ +. +.++.+++ ++. .+++-+-++ .-+++.+.++ +.++.++.++. +.+.+.+|
T Consensus 85 e~~~l~-----inaH-vGfvdE~~~eklk~~~vdvv-sLDfvgDn~-vIk~vy~l~k--sv~dyl~~l~~--L~e~~irv 152 (275)
T COG1856 85 ERTGLL-----INAH-VGFVDESDLEKLKEELVDVV-SLDFVGDND-VIKRVYKLPK--SVEDYLRSLLL--LKENGIRV 152 (275)
T ss_pred HhhCeE-----EEEE-eeeccHHHHHHHHHhcCcEE-EEeecCChH-HHHHHHcCCc--cHHHHHHHHHH--HHHcCcee
Confidence 777874 4433 3765 33 45555555 543 355556554 4455666643 57888888884 57888888
Q ss_pred EEEEEE-e-CC-CCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHhC
Q 011838 369 LFEYVM-L-AG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 369 ~ieyvL-I-~G-vNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~---~~~ps~e~i~~f~~~L~~~ 430 (476)
...+++ + .| +.- +.++ .+++.+.+. .+-|.-+.|.+|+. .++|+.++.-+..+.+++.
T Consensus 153 vpHitiGL~~gki~~---e~ka-IdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~ 217 (275)
T COG1856 153 VPHITIGLDFGKIHG---EFKA-IDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKK 217 (275)
T ss_pred ceeEEEEeccCcccc---hHHH-HHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHh
Confidence 877655 1 22 322 2332 355665543 23333455666654 4677777777777777764
No 149
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.77 E-value=0.002 Score=68.29 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=76.7
Q ss_pred EEEEeCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCC
Q 011838 303 VTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 379 (476)
Q Consensus 303 ItVsTNG~---~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvN 379 (476)
++++|-=- -+.+.+++..+...+-+.+.+..++..++ .++.++.+++.++.+ +++.+|.+|... ++||.=
T Consensus 187 itiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~---~~RGHtvedv~~a~r--LlKd~GfKv~~H--iMpGLP 259 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLER---TKRGHTVEDVVEATR--LLKDAGFKVGYH--IMPGLP 259 (515)
T ss_pred EEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHH---hcCCccHHHHHHHHH--HHHhcCcEEEEE--ecCCCC
Confidence 78888642 25688899988666778888988887654 467789999999999 468888776654 555532
Q ss_pred --CCHHHHHHHHHHHhcC---CCeEEEEeccCCC---------CCCCCCCcHHHHHHHHHH
Q 011838 380 --DSFDDAKRLIGLVQGI---PCKINLISFNPHC---------GSQFTPTTDEKMIEFRNI 426 (476)
Q Consensus 380 --Ds~ed~~~La~ll~~l---~~~VnLIp~nP~~---------~~~~~~ps~e~i~~f~~~ 426 (476)
|-+.|++...+.+..- +..+.+.|-==+. ...|++-+.|+.-++...
T Consensus 260 gs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~ 320 (515)
T COG1243 260 GSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVE 320 (515)
T ss_pred CCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3456777777777654 3344444411112 235788887665444433
No 150
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.014 Score=59.75 Aligned_cols=200 Identities=15% Similarity=0.203 Sum_probs=121.3
Q ss_pred cCCCCC----CCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccC-CCeEEEEEecCCcccCCHH-----HHHHHHHHH
Q 011838 221 QVGCAM----NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV-GSITNVVFMGMGEPLHNVE-----NVIKAANIM 290 (476)
Q Consensus 221 q~GCnl----~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~-~~i~nIvf~GmGEPLLn~d-----~V~~ai~~l 290 (476)
+.||-+ +|.+|.....+-....+.++++.|+.++...++... ..+-.| |+. | -+++.. ....+++.+
T Consensus 54 T~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkI-FTS-G-SFLD~~EVP~e~R~~Il~~i 130 (358)
T COG1244 54 TRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKI-FTS-G-SFLDPEEVPREARRYILERI 130 (358)
T ss_pred cCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEE-Ecc-c-ccCChhhCCHHHHHHHHHHH
Confidence 577765 589998776544678999999999999866554221 223334 443 5 466543 333345555
Q ss_pred HHhcCCCCCCCeEEEEeCC--ch-HHHHHHH---hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhC
Q 011838 291 VHEQGLHFSPRKVTVSTSG--LV-PQLKQFL---NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 364 (476)
Q Consensus 291 ~~~~Gl~i~~r~ItVsTNG--~~-p~i~~L~---~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~ 364 (476)
.+...+. ++.|.|-- +. +.+.++. +...+.++|.|.+++|++|+. -+|+.+++++.+++++. .+++
T Consensus 131 s~~~~v~----~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~--sINKGftF~df~~A~~~--ir~~ 202 (358)
T COG1244 131 SENDNVK----EVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIRED--SINKGFTFEDFVRAAEI--IRNY 202 (358)
T ss_pred hhcccee----EEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHH--hhhcCCcHHHHHHHHHH--HHHc
Confidence 5443342 67777753 22 3344444 334678999999999999863 46888999999999996 5777
Q ss_pred CCeEEEEEEEeCCCCCC-HHHHHHHHHHHhcCCC---eEEEEeccCCCCC---------CCCCCcHHHHHHHHHHHHhCC
Q 011838 365 NYKVLFEYVMLAGVNDS-FDDAKRLIGLVQGIPC---KINLISFNPHCGS---------QFTPTTDEKMIEFRNILAGAG 431 (476)
Q Consensus 365 g~~V~ieyvLI~GvNDs-~ed~~~La~ll~~l~~---~VnLIp~nP~~~~---------~~~~ps~e~i~~f~~~L~~~G 431 (476)
|.++. .|+|++-.-=+ .+.+++...-+..... .|.+-|-|-..++ .|+||=---+.+..+.+++.+
T Consensus 203 g~~vk-tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~ 281 (358)
T COG1244 203 GAKVK-TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTG 281 (358)
T ss_pred CCcee-EEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcC
Confidence 77654 47777543222 3444444444443322 3444443322232 477776555556666666655
Q ss_pred C
Q 011838 432 C 432 (476)
Q Consensus 432 i 432 (476)
.
T Consensus 282 ~ 282 (358)
T COG1244 282 P 282 (358)
T ss_pred C
Confidence 5
No 151
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=97.65 E-value=0.0025 Score=66.85 Aligned_cols=190 Identities=18% Similarity=0.215 Sum_probs=109.1
Q ss_pred cCCCCCCCCCCCCCCCC---CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCHHHHHHHHHHHHHhcCC
Q 011838 221 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQGL 296 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g---~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~d~V~~ai~~l~~~~Gl 296 (476)
+.-|..+|.||.-.... ....|+++||.+++..+.+ .|++.|.|.| || |-..++...+.++.+.+...
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~------~G~~Evli~g-G~~p~~~~~y~~~~~~~ik~~~p- 137 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVK------RGITEVLIVG-GEHPELSLEYYEELFRTIKEEFP- 137 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHH------cCCeEEEEec-CcCCCcchHHHHHHHHHHHHhCc-
Confidence 78999999999954332 2346999999999988754 4899999999 75 66777777777776654221
Q ss_pred CCCCCeEEEEeCC-c----------hH-HHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011838 297 HFSPRKVTVSTSG-L----------VP-QLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 363 (476)
Q Consensus 297 ~i~~r~ItVsTNG-~----------~p-~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~ 363 (476)
+ -++.--|++ + .. .+++|.+.+ +....-.=.--.++.|+.+. ..+-+.+.=++.++. +.+
T Consensus 138 ~---~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~~~--Ah~ 210 (370)
T COG1060 138 D---LHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIHER--AHR 210 (370)
T ss_pred c---hhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC--CCCCCHHHHHHHHHH--HHH
Confidence 1 123333443 2 12 366776655 22110000111355555555 345567888888886 466
Q ss_pred CCCeEEEEEEEeCCCCCCHHHHHHHHHHHh----cCCCeEEEEe--ccCCCCC----CCCCCcHHHHHHHHHHH
Q 011838 364 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ----GIPCKINLIS--FNPHCGS----QFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 364 ~g~~V~ieyvLI~GvNDs~ed~~~La~ll~----~l~~~VnLIp--~nP~~~~----~~~~ps~e~i~~f~~~L 427 (476)
.|.+-+- +.|+-++.+ .+|.-.-..-++ ..+....+|| |.|..+. ....++.+++.+.....
T Consensus 211 lGI~~ta-tml~Gh~E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAia 282 (370)
T COG1060 211 LGIPTTA-TMLLGHVET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALA 282 (370)
T ss_pred cCCCccc-eeEEEecCC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHH
Confidence 7766443 334444433 444443333333 3455566666 5555442 23445555555444443
No 152
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=97.54 E-value=0.0029 Score=64.34 Aligned_cols=195 Identities=18% Similarity=0.261 Sum_probs=124.4
Q ss_pred CCCCCCCCCCCCCCCC--------Ccc----CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 222 VGCAMNCQFCYTGRMG--------LKR----HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g--------~~r----~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
.||-.+|.||...+.. +.| -...++++..+..... ....|.+.-.-+|=.+.| +...++.
T Consensus 39 ~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-------~~~rici~~i~~p~~~~d-~~~i~~~ 110 (339)
T COG2516 39 GGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-------NFKRICIQQIAYPRALND-LKLILER 110 (339)
T ss_pred CceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-------ccccccceeeccccccch-hhhhhhh
Confidence 7999999999975421 112 2233445544443211 122233444456666644 5556666
Q ss_pred HHHhcCCCCCCCeEEEE----eCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhH-cCCCCCCcHHHHHHHHHHHHHhhC
Q 011838 290 MVHEQGLHFSPRKVTVS----TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI-MPINRKYKLGLLIETLREELHFKN 364 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVs----TNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I-~p~~~~~~le~vleal~~~l~~~~ 364 (476)
++...|.. |+|+ -.++.+.+.+..+.+...+.|-+|+++++.++++ ++.+..++++.-.+.+.+ .+...
T Consensus 111 ~~~~~~~~-----itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~-~~~~~ 184 (339)
T COG2516 111 LHIRLGDP-----ITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEK-VAEAF 184 (339)
T ss_pred hhhccCCc-----eehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHH-HHHHh
Confidence 65466665 6665 2233456666666564456799999999999999 555555778888888877 34444
Q ss_pred C-CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC---CCCCCcHHHHHHHH--HHHHhCCC
Q 011838 365 N-YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS---QFTPTTDEKMIEFR--NILAGAGC 432 (476)
Q Consensus 365 g-~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~---~~~~ps~e~i~~f~--~~L~~~Gi 432 (476)
| .++.+...+ |.-.++.++-+....+...+..|.|..|.|..+. +..+++.+.+.+.+ .+|.++|.
T Consensus 185 ~k~rv~ihliV--glGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~yli~~G~ 256 (339)
T COG2516 185 GKGRVGIHLIV--GLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRKIQVARYLIGNGE 256 (339)
T ss_pred ccCCcceeEEe--ccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHHHHHHHHHHhcCc
Confidence 4 566665433 4456778888888888888889999999998765 35666666655443 47777775
No 153
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.37 E-value=0.021 Score=57.36 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=79.4
Q ss_pred HHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEE-eCCCCCCHHHHHHHHHHHhcC
Q 011838 317 FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM-LAGVNDSFDDAKRLIGLVQGI 395 (476)
Q Consensus 317 L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvL-I~GvNDs~ed~~~La~ll~~l 395 (476)
+.+...++|-+.|.+.++++-+.| |+.+.++...+++++ +++.|.+|....++ +|| ++.++.-+.++.+..+
T Consensus 138 ~~~r~~vWvELGLQT~h~~Tlk~i---NRgHd~~~y~dav~r--~rkrgIkvc~HiI~GLPg--E~~~~mleTak~v~~~ 210 (312)
T COG1242 138 YNKRYEVWVELGLQTAHDKTLKRI---NRGHDFACYVDAVKR--LRKRGIKVCTHLINGLPG--ETRDEMLETAKIVAEL 210 (312)
T ss_pred HhhheEEEEEeccchhhHHHHHHH---hcccchHHHHHHHHH--HHHcCCeEEEEEeeCCCC--CCHHHHHHHHHHHHhc
Confidence 333447888999999999886654 677899999999998 47788888776554 677 6788888888988888
Q ss_pred CC-eEEEEeccCCCCC---------CCCCCcHHH-HHHHHHHHHhCCCeEEEc
Q 011838 396 PC-KINLISFNPHCGS---------QFTPTTDEK-MIEFRNILAGAGCTVFLR 437 (476)
Q Consensus 396 ~~-~VnLIp~nP~~~~---------~~~~ps~e~-i~~f~~~L~~~Gi~v~vR 437 (476)
++ .|.|-|++-..++ .++.-+.|+ ++...+.|+-.--.+.|-
T Consensus 211 ~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviH 263 (312)
T COG1242 211 GVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIH 263 (312)
T ss_pred CCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEE
Confidence 75 5555565544333 456666666 444556666544445443
No 154
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=97.18 E-value=0.025 Score=59.83 Aligned_cols=244 Identities=19% Similarity=0.285 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHH-hc----cccceEeEEEe----cCCCCeEEEEEecCCCeeEEEEecc-CCCceEEEEEecCCCCCCCC
Q 011838 160 LNKDFKKMLSEH-AE----FRALSLKDILT----SSDGTRKILFMLDDGLVIETVVIPC-NRGRTTVCVSSQVGCAMNCQ 229 (476)
Q Consensus 160 l~~~~r~~L~~~-~~----~~~~~~~~~~~----s~Dgt~K~l~~l~DG~~IEsVlip~-~~~r~tlCVSsq~GCnl~C~ 229 (476)
+.++.|+.|... +. -.+.+|+++.. ...|..|.-| -+|++-..+. .| .-||.-.|+
T Consensus 233 vt~~~~~aLTKQGYkviGSHSGVKiCRWTKs~lRGrG~CYK~sf-----ygi~s~rcmeltP---------slacanKcv 298 (601)
T KOG1160|consen 233 VTPDSYKALTKQGYKVIGSHSGVKICRWTKSELRGRGGCYKHSF-----YGICSHRCMELTP---------SLACANKCV 298 (601)
T ss_pred cCHHHHHHHHhccceEeeccCCeeeeeechHHhccCCceeeeee-----cceehhccCCCCC---------CcccCCCCc
Confidence 445566777554 22 23467777753 3456666654 2344443322 12 479999999
Q ss_pred CCCCCCCC-Ccc----CC-CHHHHHHHHHHH----HHHhcc----------cCCCeEEEEEecCCcccCCHHHHHHHHHH
Q 011838 230 FCYTGRMG-LKR----HL-TAAEIVEQAVFA----RRLLSS----------EVGSITNVVFMGMGEPLHNVENVIKAANI 289 (476)
Q Consensus 230 FC~tg~~g-~~r----~l-t~~EIveqv~~~----~~~l~~----------~~~~i~nIvf~GmGEPLLn~d~V~~ai~~ 289 (476)
||...... .+. .+ .++-|+..++.. .+.+.. .+..+.+-.++=.|||.+.+ .+-.+++.
T Consensus 299 fcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi~yp-~in~f~k~ 377 (601)
T KOG1160|consen 299 FCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPIMYP-EINPFAKL 377 (601)
T ss_pred eeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccccch-hhhHHHHH
Confidence 99965321 110 11 233344333322 111110 01234444444468999985 57777885
Q ss_pred HHHhcCCCCCCCeEEEEeCCchH-HHHHHHhcCCeEEEEeeCCCCHHHHhhH-cCCCCCCcHHHHHHHHHHHHHhhCCCe
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLVP-QLKQFLNESNCALAVSLNATTDEVRNWI-MPINRKYKLGLLIETLREELHFKNNYK 367 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~p-~i~~L~~~~~~~LaISLda~~de~r~~I-~p~~~~~~le~vleal~~~l~~~~g~~ 367 (476)
| |...+. -.+-||...| .+..+.+.. .|.+|+++++...-..+ +|.-+ +=+|.+++.++. + ++...+
T Consensus 378 l-H~k~is-----sflvtnaq~pe~~rnvk~vt--qlyvsvda~Tktslk~idrPlfk-dFwEr~~d~l~~-l-k~K~qr 446 (601)
T KOG1160|consen 378 L-HQKLIS-----SFLVTNAQFPEDIRNVKPVT--QLYVSVDASTKTSLKKIDRPLFK-DFWERFLDSLKA-L-KKKQQR 446 (601)
T ss_pred H-Hhccch-----HHhcccccChHHHhchhhhh--eeEEEEeecchhhhcCCCCchHH-HHHHHHHHHHHH-H-HHhhcc
Confidence 5 666665 5677998865 344443332 46699999887654433 12211 125566666665 3 344456
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCeEEEEeccCCCCC------CCCCCcHHHHHHHHHHHHhCC
Q 011838 368 VLFEYVMLAGVNDSFDDAKRLIGLVQ-GIPCKINLISFNPHCGS------QFTPTTDEKMIEFRNILAGAG 431 (476)
Q Consensus 368 V~ieyvLI~GvNDs~ed~~~La~ll~-~l~~~VnLIp~nP~~~~------~~~~ps~e~i~~f~~~L~~~G 431 (476)
..++.++++|.|. +++.+-+++++ +++..+.+.-..-...+ .-..|..|++.+|...|.+.+
T Consensus 447 tvyRlTlVkg~n~--dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l~ 515 (601)
T KOG1160|consen 447 TVYRLTLVKGWNS--DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFELVDLL 515 (601)
T ss_pred eEEEEEEeccccc--cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHHHHhh
Confidence 7789999999884 36777777765 56666666543322211 123466788888888885533
No 155
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=97.05 E-value=0.023 Score=56.93 Aligned_cols=195 Identities=12% Similarity=0.149 Sum_probs=112.9
Q ss_pred cCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-cccCC--HHHHHHHHHHHHHhc-CC
Q 011838 221 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHN--VENVIKAANIMVHEQ-GL 296 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPLLn--~d~V~~ai~~l~~~~-Gl 296 (476)
..-|.-+|.||.-.... ...++++|=..-...+.. .++.+||+++.- +=|-. ...+.+.++.+.... +.
T Consensus 77 G~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~------mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t 149 (306)
T COG0320 77 GDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD------MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQT 149 (306)
T ss_pred cchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH------hCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCc
Confidence 46799999999976543 445666654444333332 378899998732 11110 112333444333222 22
Q ss_pred CCCCCeEEEEeC---CchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 297 HFSPRKVTVSTS---GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 297 ~i~~r~ItVsTN---G~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
.|.+.|- |....++.+++.+...++=-+... +.++.+++| +.+++.-++-++. .++.+..+.-..-
T Consensus 150 -----~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETV-prL~~~VRp---~A~Y~~SL~~L~~--~k~~~P~i~TKSg 218 (306)
T COG0320 150 -----TIEVLTPDFRGNDDALEIVADAGPDVFNHNVETV-PRLYPRVRP---GATYERSLSLLER--AKELGPDIPTKSG 218 (306)
T ss_pred -----eEEEeCccccCCHHHHHHHHhcCcchhhcccccc-hhcccccCC---CCcHHHHHHHHHH--HHHhCCCcccccc
Confidence 3666665 333566777777643333233332 334444443 3356777777775 3555545554555
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeE-EEEec-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKI-NLISF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 433 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~V-nLIp~-nP~~~~-~-~~~ps~e~i~~f~~~L~~~Gi~ 433 (476)
++-|+.++.+++.+..+-|+..++.+ -+-.| .|.... + -+-.++|+.+.|+++..+.|+.
T Consensus 219 iMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 219 LMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred eeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHHHccch
Confidence 66678888888888888888888744 33344 454321 1 2335578999999999999984
No 156
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=96.79 E-value=0.23 Score=53.08 Aligned_cols=204 Identities=15% Similarity=0.233 Sum_probs=118.2
Q ss_pred eEEE-EEecCCCCCC----CCCCCCCCCCCccCCCHHHHHHHHHHHHHH----hcccCCCeEEEEEecC---C-cccCCH
Q 011838 214 TTVC-VSSQVGCAMN----CQFCYTGRMGLKRHLTAAEIVEQAVFARRL----LSSEVGSITNVVFMGM---G-EPLHNV 280 (476)
Q Consensus 214 ~tlC-VSsq~GCnl~----C~FC~tg~~g~~r~lt~~EIveqv~~~~~~----l~~~~~~i~nIvf~Gm---G-EPLLn~ 280 (476)
+.+| +.++.||+.+ |.||-.+-.|...+.+++.+++++...-+. +. -++..+-..|+|- | =|--|+
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFR-lGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFR-LGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceee-eccccceeeecccccCCCCCCCCH
Confidence 4444 8889999997 999998876766778999999999765221 10 1234444555543 3 244578
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCeEEEEeC--Cch---H----HHHH-HHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011838 281 ENVIKAANIMVHEQ-GLHFSPRKVTVSTS--GLV---P----QLKQ-FLNES--NCALAVSLNATTDEVRNWIMPINRKY 347 (476)
Q Consensus 281 d~V~~ai~~l~~~~-Gl~i~~r~ItVsTN--G~~---p----~i~~-L~~~~--~~~LaISLda~~de~r~~I~p~~~~~ 347 (476)
+.+.++.+-+.... ++. .+.++.. ++. | ++.+ +.+.+ ....++.+.++|+..-++ . |-..
T Consensus 261 ealekL~~Gir~~AP~l~----tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~-N--nL~~ 333 (560)
T COG1031 261 EALEKLFRGIRNVAPNLK----TLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARK-N--NLNA 333 (560)
T ss_pred HHHHHHHHHHHhhCCCCe----eeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhh-c--cccC
Confidence 88888777665432 332 2222221 121 2 3333 33443 334589999999876542 2 2244
Q ss_pred cHHHHHHHHHHHHHhhCCC-eEE--EEEEEeCCCC-------CCHHHHHHHHHHHhcC---C--C-eEEEEeccCCCCCC
Q 011838 348 KLGLLIETLREELHFKNNY-KVL--FEYVMLAGVN-------DSFDDAKRLIGLVQGI---P--C-KINLISFNPHCGSQ 411 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~-~V~--ieyvLI~GvN-------Ds~ed~~~La~ll~~l---~--~-~VnLIp~nP~~~~~ 411 (476)
+-|+++++++- ..+.|. +-+ +-| ++||+| ++.|..+.=.+||+.+ + + +||+-..-+.++++
T Consensus 334 spEEvl~AV~i--vn~vG~~rg~nGlP~-lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~ 410 (560)
T COG1031 334 SPEEVLEAVEI--VNEVGGGRGYNGLPY-LLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTP 410 (560)
T ss_pred CHHHHHHHHHH--HHHhcCccCcCCCcc-ccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCc
Confidence 67999999995 444332 211 111 345544 4556666666777654 2 2 68877776666664
Q ss_pred CCCC-------cHHHHHHHHHHHH
Q 011838 412 FTPT-------TDEKMIEFRNILA 428 (476)
Q Consensus 412 ~~~p-------s~e~i~~f~~~L~ 428 (476)
...- .++.+..|+++.+
T Consensus 411 ~~~~~~~~~~khk~~~~~fk~~VR 434 (560)
T COG1031 411 MWERGKKKAEKHKKLFAAFKRKVR 434 (560)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3211 1344555666554
No 157
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.10 E-value=0.26 Score=48.46 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=108.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc----CCHHHHHHHHHHHHHhc-CCCCCCCeEEEEeCCchHH
Q 011838 239 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL----HNVENVIKAANIMVHEQ-GLHFSPRKVTVSTSGLVPQ 313 (476)
Q Consensus 239 ~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL----Ln~d~V~~ai~~l~~~~-Gl~i~~r~ItVsTNG~~p~ 313 (476)
...++.++.++.+....+ .+++.|-+.| |+|. +..+ ..+.++.+.+.. +.. -..+.+|| ...
T Consensus 13 ~~~~s~e~~~~i~~~L~~------~GV~~IEvg~-~~~~~~~p~~~~-~~~~i~~l~~~~~~~~----~~~l~~~~-~~~ 79 (265)
T cd03174 13 GATFSTEDKLEIAEALDE------AGVDSIEVGS-GASPKAVPQMED-DWEVLRAIRKLVPNVK----LQALVRNR-EKG 79 (265)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEecc-CcCccccccCCC-HHHHHHHHHhccCCcE----EEEEccCc-hhh
Confidence 356788888877766533 3788888866 8887 2222 344555554332 232 23777777 556
Q ss_pred HHHHHhcCCeEEEEeeCCCCHHHHhhHc-CCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 011838 314 LKQFLNESNCALAVSLNATTDEVRNWIM-PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 392 (476)
Q Consensus 314 i~~L~~~~~~~LaISLda~~de~r~~I~-p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll 392 (476)
++++.+.+...+.+++.+.+ .|.+.. .......+++++++++. .++.|..+.+....+-+--.+++++.++++.+
T Consensus 80 i~~a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~--a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 80 IERALEAGVDEVRIFDSASE--THSRKNLNKSREEDLENAEEAIEA--AKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred HHHHHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHH--HHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 67777776445678887764 444432 22233457888888885 57778777666533333014578899999999
Q ss_pred hcCCC-eEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC-C-C--eEEEccCCC
Q 011838 393 QGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILAGA-G-C--TVFLRLSRG 441 (476)
Q Consensus 393 ~~l~~-~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~-G-i--~v~vR~~~G 441 (476)
.+.++ .|.+ .+..|. .+++++.++.+.+++. + + .+..-+..|
T Consensus 156 ~~~g~~~i~l---~Dt~G~----~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g 202 (265)
T cd03174 156 EEAGADEISL---KDTVGL----ATPEEVAELVKALREALPDVPLGLHTHNTLG 202 (265)
T ss_pred HHcCCCEEEe---chhcCC----cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 88875 4443 233332 4567777777777653 2 3 344455555
No 158
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=95.38 E-value=0.61 Score=47.58 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=120.0
Q ss_pred CCCeeEEEEeccCCCceEEEEE-----ecCCCCCCCCCCCCCCC-CCc-cCCCHHHHHHHHHHHHHHhcccCCCeEEEEE
Q 011838 198 DGLVIETVVIPCNRGRTTVCVS-----SQVGCAMNCQFCYTGRM-GLK-RHLTAAEIVEQAVFARRLLSSEVGSITNVVF 270 (476)
Q Consensus 198 DG~~IEsVlip~~~~r~tlCVS-----sq~GCnl~C~FC~tg~~-g~~-r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf 270 (476)
.|.+|--.+-| +|| ||| .+..|=..|.||-+... ... -.+|++||++-....-+. .-|..+.+
T Consensus 38 e~~GIchs~a~--dGr---CIsLlKiLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrR-----nYIeGLFL 107 (404)
T COG4277 38 EGPGICHSYAP--DGR---CISLLKILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRR-----NYIEGLFL 107 (404)
T ss_pred ccCceeeecCC--CCc---cHHHHHHHHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHH-----hhhhhhee
Confidence 35555444333 344 555 46889999999998432 222 358999999887664221 12444444
Q ss_pred ecCC---cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011838 271 MGMG---EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 347 (476)
Q Consensus 271 ~GmG---EPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~ 347 (476)
+. | .|=.-.+.+++.++++.-+.+++ +--|..+..-.....|++.....+ .+.|-+.-+.+.--+.+-|.....
T Consensus 108 SS-Gvi~~~DyTmE~mi~var~LRle~~f~-GYIHlK~IPgas~~li~eaglyad-RvSiNIElp~~~~lk~lap~K~p~ 184 (404)
T COG4277 108 SS-GVIKNPDYTMEEMIEVARILRLEHKFR-GYIHLKIIPGASPDLIKEAGLYAD-RVSINIELPTDDGLKLLAPEKDPT 184 (404)
T ss_pred cc-ccccCcchHHHHHHHHHHHHhhccccC-cEEEEEecCCCCHHHHHHHhhhhh-eeEEeEecCCcchhhhhCCCCChH
Confidence 43 4 22222345666666665455453 222333322222223444333332 345666667666666677754332
Q ss_pred cHHHHHHHHHHHHHhhC------C--CeE---EEEEEEeCC-CCCCHHHHHHHHHHHhcC-C-CeEEEEeccCCCCCCC-
Q 011838 348 KLGLLIETLREELHFKN------N--YKV---LFEYVMLAG-VNDSFDDAKRLIGLVQGI-P-CKINLISFNPHCGSQF- 412 (476)
Q Consensus 348 ~le~vleal~~~l~~~~------g--~~V---~ieyvLI~G-vNDs~ed~~~La~ll~~l-~-~~VnLIp~nP~~~~~~- 412 (476)
++..-+.-++.-+.+.+ + ..+ .=.+-||-| ..++.+++-...+.+-+. . .+|..-.|.|++.++.
T Consensus 185 dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~l 264 (404)
T COG4277 185 DILRSMGWIRLKILENAEDKRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLL 264 (404)
T ss_pred HHHHHHHHHHHHHhhcccchhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCC
Confidence 22222222221000000 0 000 011234433 345666777777666543 3 2677778888876542
Q ss_pred ---CCCcHHHH--HHHHHHHHhCCCeE-EEccCCCC----ccccccccc
Q 011838 413 ---TPTTDEKM--IEFRNILAGAGCTV-FLRLSRGD----DQMAACGQL 451 (476)
Q Consensus 413 ---~~ps~e~i--~~f~~~L~~~Gi~v-~vR~~~G~----di~aaCGqL 451 (476)
++|-..+. -+.--.|+-+|+.. .++.+.|+ +++.-|..-
T Consensus 265 p~~~pplmRehRLYQADwLlrfYgF~~~Ei~~~g~~~ld~~lDPK~~wA 313 (404)
T COG4277 265 PDDKPPLMREHRLYQADWLLRFYGFSADEILASGGDFLDPDLDPKTAWA 313 (404)
T ss_pred cccCCchhHHHHHHHHHHHHHHhCCCHHHHHhcCCCccCCCCChhhHHH
Confidence 33333222 22223456688864 45555554 566666553
No 159
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=94.35 E-value=0.19 Score=49.88 Aligned_cols=161 Identities=22% Similarity=0.390 Sum_probs=90.2
Q ss_pred cCCCCCCCCCCCCCC---CCC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-------CHHHHHHHHH
Q 011838 221 QVGCAMNCQFCYTGR---MGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-------NVENVIKAAN 288 (476)
Q Consensus 221 q~GCnl~C~FC~tg~---~g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-------n~d~V~~ai~ 288 (476)
+.||.-+|.||+... .|. .+-+..+|+++....+.+. +..+ | -||-..- ++..+++.|+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-----GSTR---F-CmGaAWRD~~GRk~~fk~IlE~ik 161 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-----GSTR---F-CMGAAWRDMKGRKSAFKRILEMIK 161 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc-----CCce---e-ecchhhhhhccchhHHHHHHHHHH
Confidence 689999999999642 333 3568889999888876542 2222 2 1343222 2445666665
Q ss_pred HHHHhcCCCCCCCeEEEEeCCchH--HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCC
Q 011838 289 IMVHEQGLHFSPRKVTVSTSGLVP--QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY 366 (476)
Q Consensus 289 ~l~~~~Gl~i~~r~ItVsTNG~~p--~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~ 366 (476)
.+ +..|+. + ..|=|++. +.++|.+.+...-.=.||.. .|.|.++.-. + ++++-++.++. .++.|.
T Consensus 162 ev-r~MgmE-----v-CvTLGMv~~qQAkeLKdAGLTAYNHNlDTS-REyYskvItT-R--tYDdRL~Ti~n--vr~aGi 228 (380)
T KOG2900|consen 162 EV-RDMGME-----V-CVTLGMVDQQQAKELKDAGLTAYNHNLDTS-REYYSKVITT-R--TYDDRLQTIKN--VREAGI 228 (380)
T ss_pred HH-HcCCce-----e-eeeeccccHHHHHHHHhccceecccCccch-hhhhccccee-c--chHHHHHHHHH--HHHhcc
Confidence 44 344553 4 34778863 56777776622112233433 3445444432 2 46788888887 467777
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEecc
Q 011838 367 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 405 (476)
Q Consensus 367 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~n 405 (476)
++---- |-|..++++|--.|..-|..++.+-.-.|+|
T Consensus 229 kvCsGG--IlGLGE~e~DriGlihtLatmp~HPESvPiN 265 (380)
T KOG2900|consen 229 KVCSGG--ILGLGESEDDRIGLIHTLATMPPHPESVPIN 265 (380)
T ss_pred eecccc--cccccccccceeeeeeeeccCCCCCcccccc
Confidence 654332 2344555555555555556565444434443
No 160
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=94.10 E-value=1.4 Score=44.63 Aligned_cols=191 Identities=10% Similarity=0.167 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCCCCCCcc---CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-c--ccCCHHHHHHHHHHHHHhcC
Q 011838 222 VGCAMNCQFCYTGRMGLKR---HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-E--PLHNVENVIKAANIMVHEQG 295 (476)
Q Consensus 222 ~GCnl~C~FC~tg~~g~~r---~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-E--PLLn~d~V~~ai~~l~~~~G 295 (476)
.-|.-+|.||.-....... .+.++-..+.|.. -++..||++..- + |=.-.+.+.+.++.+... .
T Consensus 119 DTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas---------Wgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k-~ 188 (360)
T KOG2672|consen 119 DTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS---------WGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEK-A 188 (360)
T ss_pred CccccCcceeeeecCCCCcCCCCCCcccHHHHHHH---------cCCCeEEEEecccccCcCcchHHHHHHHHHHHhh-C
Confidence 6699999999965432222 2233333333322 278899988631 1 111235677777766432 2
Q ss_pred CCCCCCeEEEEe-----CCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC--CCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 296 LHFSPRKVTVST-----SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI--NRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 296 l~i~~r~ItVsT-----NG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~--~~~~~le~vleal~~~l~~~~g~~V 368 (476)
-+ |-|.+ .|-...++.++..+ +++-|-|-|+-++++|. .++..+.+-+..++. .++....+
T Consensus 189 p~-----ilvE~L~pDF~Gd~~~Ve~va~SG-----LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~--aK~~~P~l 256 (360)
T KOG2672|consen 189 PE-----ILVECLTPDFRGDLKAVEKVAKSG-----LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKH--AKEVKPGL 256 (360)
T ss_pred cc-----cchhhcCccccCchHHHHHHHhcC-----ccceecchhhHHhcchhhcCcccchHHhHHHHHH--HHhhCCCc
Confidence 11 32222 12234567777766 23334555666667664 234567888888885 46665555
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeE-EEEeccCCCCCC---CCCCcHHHHHHHHHHHHhCCCeE
Q 011838 369 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQ---FTPTTDEKMIEFRNILAGAGCTV 434 (476)
Q Consensus 369 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~~V-nLIp~nP~~~~~---~~~ps~e~i~~f~~~L~~~Gi~v 434 (476)
.-...++-|...+.|++....+.++..++.| -+-.|.+..... ..-.++|..+.....-.+.|+.+
T Consensus 257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y 326 (360)
T KOG2672|consen 257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLY 326 (360)
T ss_pred eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEE
Confidence 4445555666778889999888888777643 344454432221 11133455566666666777754
No 161
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=88.83 E-value=20 Score=38.09 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=92.3
Q ss_pred EEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHH-----HHHHHH---
Q 011838 217 CVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-----NVIKAA--- 287 (476)
Q Consensus 217 CVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d-----~V~~ai--- 287 (476)
.||...||--.|.||.+... |.-...+.+++++.+....+ .++..|-++. |-+-.|. .+-+++
T Consensus 190 Ii~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~------egv~eIwlts--edTgaygrdig~slp~ll~kl 261 (547)
T KOG4355|consen 190 IISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFE------EGVCEIWLTS--EDTGAYGRDIGKSLPKLLWKL 261 (547)
T ss_pred EEEeccccccccccccccccccccccCCHHHHHHHHHHHHh------cCcEEEEecc--cccchhhhhhhhhhHHHHHHH
Confidence 45668999999999999543 33456788999988876532 3666666643 2222221 222222
Q ss_pred -HHHHHhcCCCCCCCeEEEEeCC--chHHHHHH---HhcCCe--EEEEeeCCCCHHHHhhHcCCCCCC---cHHHHHHHH
Q 011838 288 -NIMVHEQGLHFSPRKVTVSTSG--LVPQLKQF---LNESNC--ALAVSLNATTDEVRNWIMPINRKY---KLGLLIETL 356 (476)
Q Consensus 288 -~~l~~~~Gl~i~~r~ItVsTNG--~~p~i~~L---~~~~~~--~LaISLda~~de~r~~I~p~~~~~---~le~vleal 356 (476)
+.+....++. +. -||- +++.+.+. +....+ .|.+-+.+..|..- +-.++.| .++.+.+.+
T Consensus 262 v~~iPe~cmlr-----~g-mTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl---~emkreyc~~dfk~Vvd~L 332 (547)
T KOG4355|consen 262 VEVIPESCMLR-----AG-MTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVL---TEMKREYCNFDFKIVVDFL 332 (547)
T ss_pred HHhcchhhhhh-----hc-CCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHH---HHHHHHHhhhhHHHHHHHH
Confidence 2222222332 11 1342 12222222 222222 23344445555432 2233333 355566665
Q ss_pred HHHHHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 357 REELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 357 ~~~l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
.+ +- ..++|.+=+|-|+ .++.+|.++-.+++++... .+.+..|.|-+|++
T Consensus 333 te---rV--Pgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTP 384 (547)
T KOG4355|consen 333 TE---RV--PGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTP 384 (547)
T ss_pred Hh---hC--CCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCCh
Confidence 54 12 3356666555443 2667899999999997753 34445788888763
No 162
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=77.30 E-value=1.3 Score=46.98 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=44.9
Q ss_pred CceEEEEEecCCCCCCCCCCCCCC-CCCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecC
Q 011838 212 GRTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 273 (476)
Q Consensus 212 ~r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~Gm 273 (476)
...|..||...||+--|+||--+- .|..|....+.|++++....+ .|++.|.+.|.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~------qG~KeVTLLGQ 274 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE------QGVKEVTLLGQ 274 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh------cCceeeeeecc
Confidence 457889999999999999999863 456677888899999987543 37888888883
No 163
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=73.21 E-value=36 Score=36.44 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=62.9
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHHHH
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDEVR 337 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i-~~L~~~----~~~~LaISLda~~de~r 337 (476)
++| || +.+.+.|+.+.+.+. ++-|.|.|.... +.+ +++-++ .+..+ |.++++.=.
T Consensus 62 VfG-g~-----~~L~~~i~~~~~~~~----p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~v-i~v~t~gf~-- 128 (417)
T cd01966 62 ILG-GG-----ENLEEALDTLAERAK----PKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPV-VYVSTPDFE-- 128 (417)
T ss_pred EEC-CH-----HHHHHHHHHHHHhcC----CCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeE-EEecCCCCC--
Confidence 458 77 677787776654432 345667666542 333 233233 13333 666665421
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhC----CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKN----NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~----g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
+ +....++..++++-+++.... ..+-.+ -+|+|.|-++.|+.+|.++++.++.++++.|
T Consensus 129 ----g-~~~~G~~~a~~al~~~l~~~~~~~~~~~~~V--Niig~~~~~~~D~~eik~lL~~~Gl~v~~l~ 191 (417)
T cd01966 129 ----G-SLEDGWAAAVEAIIEALVEPGSRTVTDPRQV--NLLPGAHLTPGDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred ----C-cHHHHHHHHHHHHHHHhcccccccCCCCCcE--EEECCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 1 001124455555543222211 111123 3677887678899999999999998888765
No 164
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=72.57 E-value=30 Score=37.47 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=24.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
-+|+|.+. +.|+.+|.++++.++..+|++|
T Consensus 166 Nii~~~~~-~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 166 NVFTGWVN-PGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred EEECCCCC-hHHHHHHHHHHHHcCCCEEEee
Confidence 35677764 7899999999999999999875
No 165
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=69.11 E-value=36 Score=36.95 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
-+|+|.+. +.|+.+|.+++..++.++|.+|
T Consensus 170 Nii~~~~~-~gD~~eik~lL~~~Gl~vn~l~ 199 (457)
T TIGR02932 170 NVFPGWVN-PGDVVLLKHYFSEMGVDANILM 199 (457)
T ss_pred EEECCCCC-hHHHHHHHHHHHHcCCCEEEEe
Confidence 35677754 6889999999999999999875
No 166
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=62.96 E-value=1.9e+02 Score=30.64 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred EEEEeCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCC-
Q 011838 303 VTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV- 378 (476)
Q Consensus 303 ItVsTNG~---~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~Gv- 378 (476)
|||.|--- .+.+.+++..+-..|-|.+.+.-++.- +..|+.+++..+-+... +.+.+|.+|... |+|+.
T Consensus 225 iTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVA---RDTNRGHTV~aVce~F~--laKDaG~KvV~H--MMPdLP 297 (554)
T KOG2535|consen 225 ITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVA---RDTNRGHTVKAVCESFH--LAKDAGFKVVAH--MMPDLP 297 (554)
T ss_pred EEeecCcccchhhhHHHHHhcCCceEEeccchhHHHhh---hcccCCccHHHHHHHhh--hhhccCceeehh--hCCCCC
Confidence 67777642 357888888886677788887765543 24677788888888887 467788877654 55542
Q ss_pred C-CCHHHHHHHHHHHhc
Q 011838 379 N-DSFDDAKRLIGLVQG 394 (476)
Q Consensus 379 N-Ds~ed~~~La~ll~~ 394 (476)
| +-+.|++.+.+++.+
T Consensus 298 NVg~eRDieqF~E~Fen 314 (554)
T KOG2535|consen 298 NVGMERDIEQFKEYFEN 314 (554)
T ss_pred CCchhhhHHHHHHHhcC
Confidence 2 335678888888764
No 167
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=62.35 E-value=9.4 Score=25.78 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=13.6
Q ss_pred CeEEEEeCCchHHHHHHHh
Q 011838 301 RKVTVSTSGLVPQLKQFLN 319 (476)
Q Consensus 301 r~ItVsTNG~~p~i~~L~~ 319 (476)
-.|.|||||.-|.+.+++.
T Consensus 5 LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 5 LQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp EEEEEEESSS-HHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHH
Confidence 3599999999887665554
No 168
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=61.15 E-value=61 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=23.7
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
+|.+.+ ++.|+.+|.++|+.++..++.++
T Consensus 174 lig~~~-~~~D~~elk~lL~~~Gl~v~~l~ 202 (461)
T TIGR02931 174 LITGWV-NPGDVKELKHLLEEMDIEANVLF 202 (461)
T ss_pred EECCCC-ChhhHHHHHHHHHHcCCceEEee
Confidence 466654 47899999999999999888775
No 169
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.25 E-value=1.1e+02 Score=32.74 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=60.1
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHH
Q 011838 268 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDE 335 (476)
Q Consensus 268 Ivf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i-~~L~~~----~~~~LaISLda~~de 335 (476)
+| +| || +.+.++|+.+.+... ++-|.|.|..+. +.+ +++-++ .++.+ +-++++.=.
T Consensus 61 ~V-~G-g~-----~~L~~~i~~~~~~~~----p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~v-i~v~tpgf~ 128 (428)
T cd01965 61 AV-FG-GE-----DNLIEALKNLLSRYK----PDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPV-VYASTPSFK 128 (428)
T ss_pred ee-EC-cH-----HHHHHHHHHHHHhcC----CCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeE-EEeeCCCCC
Confidence 44 48 76 567777776654432 344667666542 333 333331 23322 444443211
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 336 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 336 ~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
- .... .++..++++-+.+.......-.-.+.+|.|.+.+..++.+|.++++.++..+|..+
T Consensus 129 g-~~~~------G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~ 189 (428)
T cd01965 129 G-SHET------GYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILP 189 (428)
T ss_pred C-cHHH------HHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEec
Confidence 0 0111 23455555543222211101111234577777555578899999999998888776
No 170
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=58.25 E-value=99 Score=36.71 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=63.4
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHH-HHHHhcC----CeEEEEeeCCCCHHHH
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNES----NCALAVSLNATTDEVR 337 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i-~~L~~~~----~~~LaISLda~~de~r 337 (476)
++| || +++.++|+.+.+... +.-|.|.|.+.. +.+ +++-++. ++-+ |.++++.=.-
T Consensus 552 VfG-G~-----~~L~~~I~~~~~~~~----p~~I~V~tTc~~eiIGDDi~~vi~~~~~~~~~~~~~pv-i~v~tpgF~G- 619 (917)
T PRK14477 552 IFG-GW-----ENLKQGILRVIEKFK----PKVIGVMTTGLTETMGDDVRSAIVQFREEHPELDDVPV-VWASTPDYCG- 619 (917)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEECCchHhhhhcCHHHHHHHHHhhccccCCCeE-EEeeCCCCcc-
Confidence 357 76 677787776655433 245777777653 233 2332221 2322 5555553110
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.... .++..++++-+++.. ...+..-.+.+|+|.|-++.|+++|.+++..++.+++.+|
T Consensus 620 s~~~------G~~~a~~aiv~~~~~-~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 620 SLQE------GYAAAVEAIVATLPE-PGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred CHHH------HHHHHHHHHHHHhcc-ccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 0011 244555555432322 1111111234678887778899999999999999998877
No 171
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=57.07 E-value=26 Score=39.64 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHhcCCC-eEEEEeccCCCCC--------CCCCC-----cHHHHHHHHHHHHhCCCeEEEccCCC--Ccc
Q 011838 381 SFDDAKRLIGLVQGIPC-KINLISFNPHCGS--------QFTPT-----TDEKMIEFRNILAGAGCTVFLRLSRG--DDQ 444 (476)
Q Consensus 381 s~ed~~~La~ll~~l~~-~VnLIp~nP~~~~--------~~~~p-----s~e~i~~f~~~L~~~Gi~v~vR~~~G--~di 444 (476)
..+-+.++..++++++. +|+|+|+..+++. .+-.| +++++++|.+.+.++||-|.+---.+ ..-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 46788889999999996 8999999876542 12222 37999999999999999987743322 223
Q ss_pred cccccccccc
Q 011838 445 MAACGQLGNP 454 (476)
Q Consensus 445 ~aaCGqL~~~ 454 (476)
.-+|.+....
T Consensus 243 ~~~L~~fdg~ 252 (628)
T COG0296 243 GNYLARFDGT 252 (628)
T ss_pred cchhhhcCCc
Confidence 4467766544
No 172
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=57.04 E-value=68 Score=34.79 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHH-HHHhcC----CeEEEEeeCCCCHH
Q 011838 268 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNES----NCALAVSLNATTDE 335 (476)
Q Consensus 268 Ivf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~-~L~~~~----~~~LaISLda~~de 335 (476)
+| +| || +.+.++|+.+.+... ++-|.|.|.++. +.+. ++-++. +.-+ +.++++.-.
T Consensus 72 ~V-fG-g~-----~~L~~aI~~~~~~~~----P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pv-i~v~tpgF~ 139 (455)
T PRK14476 72 TI-LG-GD-----ENVEEAILNICKKAK----PKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPI-VYVSTPDFK 139 (455)
T ss_pred eE-eC-CH-----HHHHHHHHHHHHhhC----CCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeE-EEecCCCCC
Confidence 44 48 87 678888877654432 345777777752 2332 222221 2222 455555421
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhh----CCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 336 VRNWIMPINRKYKLGLLIETLREELHFK----NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 336 ~r~~I~p~~~~~~le~vleal~~~l~~~----~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
- .... .++..++++-+.+... ...+-.+ -+|.|.|-++.|+.+|.++++.++..++++|
T Consensus 140 g-~~~~------G~~~a~~al~~~~~~~~~~~~~~~~~V--NiIgg~~~~~~D~~elk~lL~~~Gl~v~~lp 202 (455)
T PRK14476 140 G-ALED------GWAAAVEAIVEALVPPASSTGRRPRQV--NVLPGSHLTPGDIEELREIIEAFGLEPIILP 202 (455)
T ss_pred C-cHHH------HHHHHHHHHHHHhcccccCCCCCCCcE--EEECCCCCCcccHHHHHHHHHHcCCceEEec
Confidence 0 0011 2344555544322221 1111123 3567776567889999999999998888775
No 173
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=56.33 E-value=2.1e+02 Score=28.26 Aligned_cols=109 Identities=15% Similarity=0.212 Sum_probs=64.0
Q ss_pred EEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCH
Q 011838 303 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 382 (476)
Q Consensus 303 ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ 382 (476)
+.+-+.--...+..+++.+...+.+...+.. .+.++++.++ +.|..+..-.++=|+ ...
T Consensus 73 vHLMv~~P~~~i~~~~~aGad~It~H~Ea~~--------------~~~~~l~~Ik-----~~g~~~kaGlalnP~--Tp~ 131 (228)
T PRK08091 73 VHLMVRDQFEVAKACVAAGADIVTLQVEQTH--------------DLALTIEWLA-----KQKTTVLIGLCLCPE--TPI 131 (228)
T ss_pred EEeccCCHHHHHHHHHHhCCCEEEEcccCcc--------------cHHHHHHHHH-----HCCCCceEEEEECCC--CCH
Confidence 4443332224567788877444344444431 1334444444 456533444455565 244
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccCCC-CCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 011838 383 DDAKRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 383 ed~~~La~ll~~l~~~VnLIp~nP~~-~~~~~~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
+.++.+...+. .|-++..+|-. |..|.+...+.+.++++.+.++|+++.|
T Consensus 132 ~~i~~~l~~vD----~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 132 SLLEPYLDQID----LIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred HHHHHHHhhcC----EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 55555544333 67788899975 4457777888999999999988876544
No 174
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=54.90 E-value=93 Score=34.42 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=61.9
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch----HHHHH----HHhcC----CeEEEEeeCCCCHHHH
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQ----FLNES----NCALAVSLNATTDEVR 337 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~----p~i~~----L~~~~----~~~LaISLda~~de~r 337 (476)
++| |+ +++.+.|+.+.+.+. ++-|.|.|..+. +.+.. .-+++ ++-+ +-++++.=.-
T Consensus 123 VfG-G~-----~~L~e~I~~~~~~y~----P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pV-i~v~TpgF~G- 190 (515)
T TIGR01286 123 VFG-GL-----KNMVDGLQNCYALYK----PKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPV-PFAHTPSFVG- 190 (515)
T ss_pred eeC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCce-EEeeCCCCcc-
Confidence 347 76 678888876655433 345888887753 22222 22222 1112 4444432100
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhC------CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKN------NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~------g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
..+.+ ++..++++-+++.... ..+-.+ -+|+|.+..+.++++|.+++..++..++++|
T Consensus 191 s~~~G------yd~a~~ail~~l~~~~~~~~~~~~~~~V--Nii~g~~~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 191 SHITG------YDNMFKGILEYFTKGSMDDKVVGSNGKI--NIIPGFETYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred cHHHH------HHHHHHHHHHHHhhcccccccCCCCCeE--EEECCCCCCchhHHHHHHHHHHcCCCeEEcc
Confidence 11111 4455555554332211 111123 3578887667899999999999999888776
No 175
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=54.07 E-value=1.6e+02 Score=29.80 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHhhCC-CeEEEEE--EEeCCCCCCHHHHHH---HHHHHhcC--CCeEEEEeccCC-----CC--CCC
Q 011838 348 KLGLLIETLREELHFKNN-YKVLFEY--VMLAGVNDSFDDAKR---LIGLVQGI--PCKINLISFNPH-----CG--SQF 412 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g-~~V~iey--vLI~GvNDs~ed~~~---La~ll~~l--~~~VnLIp~nP~-----~~--~~~ 412 (476)
+.+++++++++ +.+..| .+|..+| +++-+.-+-..+++. |++.|++. .+.+.++...+. .. ..+
T Consensus 94 ~~~~~i~~f~~-Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l~~~~~~~ 172 (266)
T PF08902_consen 94 PKDERIETFRE-LSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNLARLGFRI 172 (266)
T ss_pred CHHHHHHHHHH-HHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHHHhhcCCC
Confidence 46778888887 555554 5677776 555544444445554 44445543 134444432211 11 135
Q ss_pred CCCcHHHHHHHH----HHHHhCCCeEE
Q 011838 413 TPTTDEKMIEFR----NILAGAGCTVF 435 (476)
Q Consensus 413 ~~ps~e~i~~f~----~~L~~~Gi~v~ 435 (476)
..++.+++.++. ++.+++|+.+.
T Consensus 173 ~~~~~~~~~~l~~~l~~ia~~~g~~l~ 199 (266)
T PF08902_consen 173 REPSEEEKRELAKRLAEIAKKYGMTLY 199 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 678877776555 55578888753
No 176
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=49.67 E-value=2.5e+02 Score=30.02 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=59.1
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHH-HHHhc---CCeEEEEeeCCCCHHHHhh
Q 011838 271 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNE---SNCALAVSLNATTDEVRNW 339 (476)
Q Consensus 271 ~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~-~L~~~---~~~~LaISLda~~de~r~~ 339 (476)
+| || +.+.++|+.+.+... ++-|.|.|.... +.+. ++-++ .+..+ |.++++.=. ...
T Consensus 66 fG-g~-----~kL~~aI~~~~~~~~----P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~v-i~v~t~gF~-g~~ 133 (429)
T cd03466 66 YG-GE-----KNLKKGLKNVIEQYN----PEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKI-IPASTPGYG-GTH 133 (429)
T ss_pred EC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcE-EEEECCCCc-ccH
Confidence 58 76 677888877655432 345777777653 2332 22222 22222 444443210 000
Q ss_pred HcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 340 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 340 I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.. .++..++++-+.+......+-. +.+|.|.+ ++.|+.+|.++++.++.++++.|
T Consensus 134 ~~------G~~~a~~al~~~~~~~~~~~~~--VNlig~~~-~~~D~~ei~~lL~~~Gl~~~~~~ 188 (429)
T cd03466 134 VE------GYDTAVRSIVKNIAVDPDKIEK--INVIAGMM-SPADIREIKEILREFGIEYILLP 188 (429)
T ss_pred HH------HHHHHHHHHHHHhccCCCCCCc--EEEECCCC-ChhHHHHHHHHHHHcCCCeEEec
Confidence 11 2445555554322221111112 34677765 57889999999999998887655
No 177
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.09 E-value=1.7e+02 Score=31.45 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=58.0
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHH-HHHHhcC----CeEEEEeeCCCCHHHH
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNES----NCALAVSLNATTDEVR 337 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i-~~L~~~~----~~~LaISLda~~de~r 337 (476)
++| || +.+.++|+.+.+... +.-|.|.|..+. +.+ +++-++. +..+ +-++.+.=.-
T Consensus 66 V~G-g~-----~~L~~ai~~~~~~~~----p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~v-i~v~tpgf~g- 133 (435)
T cd01974 66 VFG-GQ-----NNLIDGLKNAYAVYK----PDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPV-PFANTPSFVG- 133 (435)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeE-EEecCCCCcc-
Confidence 357 76 678888887765543 235777777653 222 2222221 2222 4444432100
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhC---CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~---g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.... .++..++++-.++.... ..+-.+ -+|+|.+...+++.+|.++++.++.++++.|
T Consensus 134 s~~~------G~~~a~~al~~~l~~~~~~~~~~~~V--Nli~~~~~~~d~~~el~~lL~~~Gl~~~~~~ 194 (435)
T cd01974 134 SHIT------GYDNMVKGILTHLTEGSGGAGKNGKL--NIIPGFDTYAGNMREIKRLLELMGVDYTILP 194 (435)
T ss_pred CHHH------HHHHHHHHHHHHHhcccCCCCCCCeE--EEECCCCCCcchHHHHHHHHHHcCCCEEEec
Confidence 0001 23445555543222211 112123 3567776433348999999999998887654
No 178
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=47.82 E-value=1.5e+02 Score=26.97 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=41.6
Q ss_pred CeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHh----cCCeEEEEeeCCCCHHHH
Q 011838 264 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN----ESNCALAVSLNATTDEVR 337 (476)
Q Consensus 264 ~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~----~~~~~LaISLda~~de~r 337 (476)
++++|+|.|||--.+-.+.+.+++.... ..++ .+.+.+|--...+.++.. ...+.+.+|--+.+.|+-
T Consensus 19 ~~~~iv~~GiGGS~lg~~~~~~~~~~~~-~~~~-----~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et~ 90 (158)
T cd05015 19 KITDVVVIGIGGSDLGPRAVYEALKPYF-KGGL-----RLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETL 90 (158)
T ss_pred CCCEEEEEecCccHHHHHHHHHHHHhhc-cCCc-----eEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCCHHHH
Confidence 6899999999997776666666655331 1233 366666633222233332 345667788888877763
No 179
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.01 E-value=30 Score=27.50 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCCCccccccccc
Q 011838 418 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 451 (476)
Q Consensus 418 e~i~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL 451 (476)
.+.-++.+.|+++|+.+.+- +..++|.++||.-
T Consensus 12 ~~a~~~ek~lk~~gi~~~li-P~P~~i~~~CG~a 44 (73)
T PF11823_consen 12 HDAMKAEKLLKKNGIPVRLI-PTPREISAGCGLA 44 (73)
T ss_pred HHHHHHHHHHHHCCCcEEEe-CCChhccCCCCEE
Confidence 34445566666666655443 2334556666653
No 180
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=44.35 E-value=2e+02 Score=31.00 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=60.3
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHH-HHHhc----CCeEEEEeeCCCCHHHH
Q 011838 270 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNE----SNCALAVSLNATTDEVR 337 (476)
Q Consensus 270 f~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~-~L~~~----~~~~LaISLda~~de~r 337 (476)
++| || +++.++|+.+.+... ++-|.|.|.++. +.+. ++-++ .++-+ +.++.+.-.-
T Consensus 72 VfG-g~-----~~L~~~I~~~~~~~~----P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pv-i~v~tpgf~g- 139 (432)
T TIGR01285 72 ILG-GD-----EHIEEAIDTLCQRNK----PKAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAV-VTVNTPDFKG- 139 (432)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeE-EEecCCCcCC-
Confidence 347 77 567777776654432 345777777652 3333 22222 12222 5566554211
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhC----CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 338 NWIMPINRKYKLGLLIETLREELHFKN----NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 338 ~~I~p~~~~~~le~vleal~~~l~~~~----g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
... ..++..++++-+++.... ..+-.+ -++.|.|-++.++.+|.++++.++..++++|
T Consensus 140 ~~~------~G~~~a~~al~~~~~~~~~~~~~~~~~V--Niig~~~~~~~d~~elk~lL~~~Gl~~~~l~ 201 (432)
T TIGR01285 140 SLE------DGYAAAVESIIEAWVPPAPARAQRNRRV--NLLVGSLLTPGDIEELRRMVEAFGLKPIILP 201 (432)
T ss_pred chH------HHHHHHHHHHHHHHcccccccCCCCCeE--EEEcCCCCCccCHHHHHHHHHHcCCceEEec
Confidence 001 124555555543222211 111123 3566766556788999999999888887765
No 181
>smart00642 Aamy Alpha-amylase domain.
Probab=40.85 E-value=1.2e+02 Score=28.05 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEE
Q 011838 416 TDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 416 s~e~i~~f~~~L~~~Gi~v~v 436 (476)
+.++++++.+.+.++|+.|.+
T Consensus 68 t~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 368899999999999999754
No 182
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=40.81 E-value=3e+02 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=20.2
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEEEE
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKINLI 402 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~VnLI 402 (476)
+|.+.|- +.++.+|.++|+.++.++|.+
T Consensus 165 iig~~~~-~~d~~el~~lL~~~Gi~~~~~ 192 (406)
T cd01967 165 IIGEYNI-GGDAWVIKPLLEELGIRVNAT 192 (406)
T ss_pred EEecccc-chhHHHHHHHHHHcCCEEEEE
Confidence 4555553 567888999999988877753
No 183
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=40.60 E-value=1.7e+02 Score=26.87 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCC----CCCCcHHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ----FTPTTDEKMIEF 423 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~----~~~ps~e~i~~f 423 (476)
+.++..+.++. ....+.++. ++.+ +++++.+|++..-++. .+|+-+....++.. .-.-++++++.|
T Consensus 60 sv~~a~~~l~~--~~~~~~~v~---ii~k----~~~d~~~l~~~g~~i~-~iNvG~~~~~~g~~~i~~~v~l~~ee~~~l 129 (151)
T PF03830_consen 60 SVEEAIEKLKK--PEYSKKRVL---IIVK----SPEDALRLVEAGVKIK-EINVGNMSKKPGRKKITKNVYLSEEEIEAL 129 (151)
T ss_dssp -HHHHHHHHCG--GGGTTEEEE---EEES----SHHHHHHHHHTT---S-EEEEEEB---TTSEEESSSBEE-HHHHHHH
T ss_pred EHHHHHHHHHh--cccCCceEE---EEEC----CHHHHHHHHhcCCCCC-EEEECCCCCCCccceeCCeEEECHHHHHHH
Confidence 34555655554 122333432 2333 6888888887443333 68887765544432 233558889888
Q ss_pred HHHHHhCCCeEEEccCCCC
Q 011838 424 RNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 424 ~~~L~~~Gi~v~vR~~~G~ 442 (476)
++... .|++++++....+
T Consensus 130 ~~l~~-~Gv~i~~q~vP~~ 147 (151)
T PF03830_consen 130 KELAD-KGVEIEFQMVPDD 147 (151)
T ss_dssp HHHHH-TT-EEEE-SSTTS
T ss_pred HHHHH-CCCEEEEEECcCC
Confidence 76664 5999999887654
No 184
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=39.19 E-value=2.5e+02 Score=25.78 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 381 SFDDAKRLIGLVQGIP-CKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 381 s~ed~~~La~ll~~l~-~~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+++++.++++ .+.+ ..+|+-.....++. ..-.-++++++.|++... .|++++++....+
T Consensus 84 ~~~da~~l~~--~g~~i~~iniG~~~~~~g~~~v~~~v~l~~~e~~~l~~l~~-~Gv~v~~q~vP~d 147 (151)
T TIGR00854 84 NPQDVLTLVE--GGVPIKTVNVGGMHFSNGKKQITKKVSVDDQDITAFRFLKQ-RGVKLFLRDVPSD 147 (151)
T ss_pred CHHHHHHHHH--cCCCCCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHH-cCCEEEEEECcCC
Confidence 6788887765 2333 26777655443332 223456888998877665 5999999876653
No 185
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=39.17 E-value=74 Score=34.63 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=40.6
Q ss_pred eEEEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEEEccCCCCcccccccccc
Q 011838 398 KINLISFNPHCG-SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 452 (476)
Q Consensus 398 ~VnLIp~nP~~~-~~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~ 452 (476)
.+--+-..|+.+ ..+..|+++-+++.+++++++|+...+ +|++++||..+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~-----DEVQtG~GRTG 272 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIA-----DEVQTGFGRTG 272 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE-----eccccCCCccc
Confidence 444444567754 467888899999999999999998877 89999999986
No 186
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.04 E-value=5.1e+02 Score=27.32 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=96.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHH
Q 011838 239 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 318 (476)
Q Consensus 239 ~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~ 318 (476)
...++.++.++.+....+ .+++.|-+ |-|-++.+. .+.++.+.+ .+.+ ..+....-.....+++.+
T Consensus 20 ~~~~s~e~k~~ia~~L~~------~GV~~IE~---G~p~~~~~~-~e~i~~i~~-~~~~---~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 20 GVVFTNEEKLAIARMLDE------IGVDQIEA---GFPAVSEDE-KEAIKAIAK-LGLN---ASILALNRAVKSDIDASI 85 (378)
T ss_pred CCCCCHHHHHHHHHHHHH------hCCCEEEE---eCCCcChHH-HHHHHHHHh-cCCC---eEEEEEcccCHHHHHHHH
Confidence 356888887776655432 26776653 568887543 455565543 4543 123332222345677777
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011838 319 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 398 (476)
Q Consensus 319 ~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 398 (476)
+.+-..+.+.+...+...+.++. ......++.+.+.++. .+..|..|.+.. ..+--.+++.+.++++.+.+.++.
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~--a~~~G~~v~~~~--ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEY--AKDHGLYVSFSA--EDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHH--HHHCCCeEEEEe--ccCCCCCHHHHHHHHHHHHhCCCC
Confidence 76633456777666544444443 3334445666667774 466777665542 222223578888888888877653
Q ss_pred EEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC-CCe--EEEccCCC
Q 011838 399 INLISFNPHCGSQFTPTTDEKMIEFRNILAGA-GCT--VFLRLSRG 441 (476)
Q Consensus 399 VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~-Gi~--v~vR~~~G 441 (476)
. +-+-.+.|. ..++++.++.+.+++. +++ +..-+..|
T Consensus 161 ~--I~l~DT~G~----~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 200 (378)
T PRK11858 161 R--VRFCDTVGI----LDPFTMYELVKELVEAVDIPIEVHCHNDFG 200 (378)
T ss_pred E--EEEeccCCC----CCHHHHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 2 222222232 3456666666665543 333 34444445
No 187
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.58 E-value=1e+02 Score=23.80 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeccCCC-CC-----CCCCCcHHHHHHHHHHHHhCCCeE
Q 011838 380 DSFDDAKRLIGLVQGIPCKINLISFNPHC-GS-----QFTPTTDEKMIEFRNILAGAGCTV 434 (476)
Q Consensus 380 Ds~ed~~~La~ll~~l~~~VnLIp~nP~~-~~-----~~~~ps~e~i~~f~~~L~~~Gi~v 434 (476)
|.+..+.++.+.+.. +..|--+-|.... +. .+..++++.++++.+.|++.|+.+
T Consensus 7 dkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 7 ERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 556678888888876 5444333443221 11 246677899999999999999865
No 188
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=36.35 E-value=2.9e+02 Score=27.26 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEEEeC-CCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCCCCCc-HHHHHHHHHH
Q 011838 350 GLLIETLREELHFKNNYKVLFEYVMLA-GVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTT-DEKMIEFRNI 426 (476)
Q Consensus 350 e~vleal~~~l~~~~g~~V~ieyvLI~-GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~~~ps-~e~i~~f~~~ 426 (476)
+.+.++++. .++.+.++.+--++-+ ||.-..+++..|+++++..++ .|.+=.|. +|.+..|-+ .+-++++.+.
T Consensus 14 ~~l~~~~~~--~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~--DGRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 14 PVLLEAIEH--AKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFT--DGRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp HHHHHHHHH--HCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE---SSSS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEec--CCCCCCcchHHHHHHHHHHH
Confidence 456666665 4666777887776765 688889999999999998875 35444443 344444444 5668889998
Q ss_pred HHhCCC
Q 011838 427 LAGAGC 432 (476)
Q Consensus 427 L~~~Gi 432 (476)
+.+.|.
T Consensus 90 l~~~~~ 95 (223)
T PF06415_consen 90 LAEIGI 95 (223)
T ss_dssp HHHHTC
T ss_pred HHhhCC
Confidence 888654
No 189
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=36.13 E-value=54 Score=25.06 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhcCCCeE-EEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 011838 380 DSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 435 (476)
Q Consensus 380 Ds~ed~~~La~ll~~l~~~V-nLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~Gi~v~ 435 (476)
|.+..+.++.+.+.+.+..| .+..+......-++--. +..+++.+.|+++|+.+.
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV-SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHHHHCCCEEE
Confidence 56778888999888776544 33333322211111111 335688899999999875
No 190
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=34.77 E-value=1.3e+02 Score=31.88 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC--CCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHH
Q 011838 347 YKLGLLIETLREELHFKNNYKVLFEYVMLAG--VNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 424 (476)
Q Consensus 347 ~~le~vleal~~~l~~~~g~~V~ieyvLI~G--vNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~ 424 (476)
++.+++-+++.+ + ..+ +-.-++++..| .--+...+..|.+-|+.++ +|.++.+.-- ...-.| ..--..+.
T Consensus 141 ~~~~~~~~al~Y-I-a~h--PeI~eVllSGGDPL~ls~~~L~~ll~~L~~Ip-Hv~iiRi~TR--~pvv~P-~RIt~~L~ 212 (369)
T COG1509 141 FNKEEWDKALDY-I-AAH--PEIREVLLSGGDPLSLSDKKLEWLLKRLRAIP-HVKIIRIGTR--LPVVLP-QRITDELC 212 (369)
T ss_pred CCHHHHHHHHHH-H-HcC--chhheEEecCCCccccCHHHHHHHHHHHhcCC-ceeEEEeecc--cceech-hhccHHHH
Confidence 356777777774 3 332 22334444444 3335566777777777665 6777776421 011011 11125678
Q ss_pred HHHHhCCCeEEEcc--CC----CCccccccccccccCCC---CCCCCC-ChhhH
Q 011838 425 NILAGAGCTVFLRL--SR----GDDQMAACGQLGNPGAI---QAPLLR-VPEKF 468 (476)
Q Consensus 425 ~~L~~~Gi~v~vR~--~~----G~di~aaCGqL~~~~~~---~~~~~~-~~~~~ 468 (476)
++|.+.+..+.+-. .+ .....+||..|+..+.. |..+|+ +|-.+
T Consensus 213 ~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~ 266 (369)
T COG1509 213 EILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDP 266 (369)
T ss_pred HHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCH
Confidence 88888667766532 23 34455699999888744 999999 34333
No 191
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.63 E-value=4.5e+02 Score=28.05 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=56.4
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHHHHHhcCCe-EEEEeeCCCCHHHHhh
Q 011838 268 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLKQFLNESNC-ALAVSLNATTDEVRNW 339 (476)
Q Consensus 268 Ivf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~~L~~~~~~-~LaISLda~~de~r~~ 339 (476)
+| +| || +.+.++|+.+.+... ++.|.|.|.... +.+.+-+++.+. .+.++..+.....
T Consensus 66 ~V-~G-g~-----~kL~~~I~~~~~~~~----p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~--- 131 (427)
T cd01971 66 IV-FG-GE-----DRLRELIKSTLSIID----ADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNN--- 131 (427)
T ss_pred eE-eC-CH-----HHHHHHHHHHHHhCC----CCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCccc---
Confidence 44 58 76 677787776654432 345777776653 233222233322 3234443332111
Q ss_pred HcCCCCCCcHHHHHHHHHHHHHhhC--CCeEEEEEEEeCCCC---C-CHHHHHHHHHHHhcCCCeEEEEe
Q 011838 340 IMPINRKYKLGLLIETLREELHFKN--NYKVLFEYVMLAGVN---D-SFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 340 I~p~~~~~~le~vleal~~~l~~~~--g~~V~ieyvLI~GvN---D-s~ed~~~La~ll~~l~~~VnLIp 403 (476)
....+..++++-..+.... ..+-.++ +|..++ . ...|+.+|.++|+.++..++.+.
T Consensus 132 ------~~G~~~a~~al~~~~~~~~~~~~~~~VN--iiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~ 193 (427)
T cd01971 132 ------YAGHEIVLKAIIDQYVGQSEEKEPGLVN--LWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILF 193 (427)
T ss_pred ------ccHHHHHHHHHHHHhccCCCCCCCCeEE--EEeccCCccccccccHHHHHHHHHHCCCeEEEEE
Confidence 1124555555543222211 1222333 333222 1 13678889999999988887663
No 192
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=33.35 E-value=3.6e+02 Score=24.69 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 381 SFDDAKRLIGLVQGIP-CKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 381 s~ed~~~La~ll~~l~-~~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+++++.+|++. +++ ..+|+-.....++. ..-.-++++++.|++.. +.|++++++....+
T Consensus 83 ~~~~~~~l~~~--g~~i~~vnvG~~~~~~~~~~v~~~v~l~~~e~~~lk~l~-~~Gv~v~~q~vP~d 146 (151)
T cd00001 83 NPQDVLRLVEG--GVPIKTINVGNMAFRPGKVQITKAVSLDEEDVAAFKELA-QKGVKVEIQMVPND 146 (151)
T ss_pred CHHHHHHHHHc--CCCCCEEEECCCcCCCCCEEEecceecCHHHHHHHHHHH-HcCCEEEEEECcCC
Confidence 67888887662 333 26777665444332 22345688899887766 46999999877654
No 193
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=33.20 E-value=5.2e+02 Score=26.01 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEe--cCCcccCCHHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCc-h----H
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFM--GMGEPLHNVENVIKAANIMVHE-QGLHFSPRKVTVSTSGL-V----P 312 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~--GmGEPLLn~d~V~~ai~~l~~~-~Gl~i~~r~ItVsTNG~-~----p 312 (476)
..|++||+++.....+. +..+-++..= --|.|.+.++...+.++.+.+. -++ -+.++|.|. . .
T Consensus 22 P~tpeEia~~A~~c~~A----GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~-----iv~~Ttg~~~~~~~~~ 92 (272)
T PF05853_consen 22 PITPEEIAADAVACYEA----GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDL-----IVQPTTGGGGGPDPEE 92 (272)
T ss_dssp --SHHHHHHHHHHHHHH----TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTS-----EEEEESSTTTTSGHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCe-----EEEeCCCCCCCCCHHH
Confidence 47999999999887542 2334444443 1388999988888888877666 454 388888873 1 1
Q ss_pred HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 011838 313 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 392 (476)
Q Consensus 313 ~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll 392 (476)
++.-+.........+++.+.+-..++.+. ..+.+.+.+.++. ..+.|.+..++. . +..++..+..++
T Consensus 93 R~~~v~~~~pd~asl~~gs~n~~~~~~~~----~n~~~~~~~~~~~--~~e~Gi~pe~ev--~-----d~~~l~~~~~l~ 159 (272)
T PF05853_consen 93 RLAHVEAWKPDMASLNPGSMNFGTRDRVY----INTPADARELARR--MRERGIKPEIEV--F-----DPGHLRNARRLI 159 (272)
T ss_dssp HCTHHHHH--SEEEEE-S-EEESGGCSEE-------HHHHHHHHHH--HHHTT-EEEEEE--S-----SHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEecccccccccCCcee----cCCHHHHHHHHHH--HHHcCCeEEEEE--E-----cHHHHHHHHHHH
Confidence 22112111222334555554322111111 1245566666664 456777666653 2 366788777777
Q ss_pred hc-C---CCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh
Q 011838 393 QG-I---PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 393 ~~-l---~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~ 429 (476)
+. + +..+++.-=.+ .-.+++.+.+..+.+.+.+
T Consensus 160 ~~G~l~~p~~~~~vlG~~----~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 160 EKGLLPGPLLVNFVLGVP----GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp HTTSS-SSEEEEEEES-T----TS--S-HHHHHHHHHHHHH
T ss_pred HCCCCCCCeEEEEcccCC----CCCCCCHHHHHHHHHhcCC
Confidence 63 3 22444433111 1236778888888888876
No 194
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=32.61 E-value=3.5e+02 Score=26.06 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=73.2
Q ss_pred EEEEEecCCcccCCH---HHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC
Q 011838 266 TNVVFMGMGEPLHNV---ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 342 (476)
Q Consensus 266 ~nIvf~GmGEPLLn~---d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p 342 (476)
-++=+|- |.=.-|. ..+++.++.. ..+. ..+.+-+.--...++.+.+.+...+.+.+.+..
T Consensus 29 lHiDiMD-g~fvpn~~~g~~~i~~i~~~---~~~~---~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~--------- 92 (201)
T PF00834_consen 29 LHIDIMD-GHFVPNLTFGPDIIKAIRKI---TDLP---LDVHLMVENPERYIEEFAEAGADYITFHAEATE--------- 92 (201)
T ss_dssp EEEEEEB-SSSSSSB-B-HHHHHHHHTT---SSSE---EEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT---------
T ss_pred EEEeecc-cccCCcccCCHHHHHHHhhc---CCCc---EEEEeeeccHHHHHHHHHhcCCCEEEEcccchh---------
Confidence 3566777 7643332 2344444422 2221 235555544345678888887445445554332
Q ss_pred CCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCC-CCCCCCCcHHHHH
Q 011838 343 INRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMI 421 (476)
Q Consensus 343 ~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~-~~~~~~ps~e~i~ 421 (476)
.+.++++.++ +.|.++.+. +-|+ .. ++.+..++..+ ..|.++..+|-. |..|.+...+.++
T Consensus 93 -----~~~~~i~~ik-----~~g~k~Gia--lnP~--T~---~~~~~~~l~~v-D~VlvMsV~PG~~Gq~f~~~~~~KI~ 154 (201)
T PF00834_consen 93 -----DPKETIKYIK-----EAGIKAGIA--LNPE--TP---VEELEPYLDQV-DMVLVMSVEPGFGGQKFIPEVLEKIR 154 (201)
T ss_dssp -----THHHHHHHHH-----HTTSEEEEE--E-TT--S----GGGGTTTGCCS-SEEEEESS-TTTSSB--HGGHHHHHH
T ss_pred -----CHHHHHHHHH-----HhCCCEEEE--EECC--CC---chHHHHHhhhc-CEEEEEEecCCCCcccccHHHHHHHH
Confidence 1334554444 457776553 4454 22 33344444432 267888888864 3457777889999
Q ss_pred HHHHHHHhCCCeEEE
Q 011838 422 EFRNILAGAGCTVFL 436 (476)
Q Consensus 422 ~f~~~L~~~Gi~v~v 436 (476)
++++...++|..+.+
T Consensus 155 ~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 155 ELRKLIPENGLDFEI 169 (201)
T ss_dssp HHHHHHHHHTCGSEE
T ss_pred HHHHHHHhcCCceEE
Confidence 999999987765544
No 195
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=32.59 E-value=6.2e+02 Score=26.77 Aligned_cols=166 Identities=15% Similarity=0.194 Sum_probs=79.6
Q ss_pred CeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHh---cCCeEEEEeeCCCCHHHHhhH
Q 011838 264 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN---ESNCALAVSLNATTDEVRNWI 340 (476)
Q Consensus 264 ~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~---~~~~~LaISLda~~de~r~~I 340 (476)
....|+|+| |--..+.+..+++ .|+. .+++++ ..++.++.+ ...+.|.|..+.....
T Consensus 79 ~~~~Iif~g---p~K~~~~l~~a~~-----~Gv~----~i~vDS---~~El~~i~~~~~~~~v~lRi~~~~~~~~----- 138 (394)
T cd06831 79 SPENIIYTN---PCKQASQIKYAAK-----VGVN----IMTCDN---EIELKKIARNHPNAKLLLHIATEDNIGG----- 138 (394)
T ss_pred CcCCEEEeC---CCCCHHHHHHHHH-----CCCC----EEEECC---HHHHHHHHHhCCCCcEEEEEeccCCCCC-----
Confidence 456799999 6656556555443 4653 244444 444444443 3345555554321110
Q ss_pred cCCCCCC--cHHHHHHHHHHHHHhhCCCeE-EEEEEEeCCCCCCH------HHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q 011838 341 MPINRKY--KLGLLIETLREELHFKNNYKV-LFEYVMLAGVNDSF------DDAKRLIGLVQGIPCKINLISFNPHCGSQ 411 (476)
Q Consensus 341 ~p~~~~~--~le~vleal~~~l~~~~g~~V-~ieyvLI~GvNDs~------ed~~~La~ll~~l~~~VnLIp~nP~~~~~ 411 (476)
.+...++ +.+++.+.++. .+..+..+ -+.+-+=-+..|.. +.++.+.++++.++..+..+-+ -+|..
T Consensus 139 ~~~~~KFGi~~~~~~~~l~~--~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldi--GGGf~ 214 (394)
T cd06831 139 EEMNMKFGTTLKNCRHLLEC--AKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDI--GGGFT 214 (394)
T ss_pred CccCCCCCCCHHHHHHHHHH--HHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEe--CCCcC
Confidence 0111122 56677776664 34455442 34333322333322 1123455556555443333322 11211
Q ss_pred CCCCcHHHH-HHHHHHHHhC---CCeEEEccCCCCccccccccccc
Q 011838 412 FTPTTDEKM-IEFRNILAGA---GCTVFLRLSRGDDQMAACGQLGN 453 (476)
Q Consensus 412 ~~~ps~e~i-~~f~~~L~~~---Gi~v~vR~~~G~di~aaCGqL~~ 453 (476)
...++.+++ ....+.+.+. +-.+++.-+.|+-+.|.||-|..
T Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~li~EPGR~lva~ag~lvt 260 (394)
T cd06831 215 GSEIQLEEVNHVIRPLLDVYFPEGSGIQIIAEPGSYYVSSAFTLAV 260 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCcCCCCEEEEeCChhhhhcceEEEE
Confidence 122444443 2333444432 22356667999999999999853
No 196
>PRK14057 epimerase; Provisional
Probab=32.40 E-value=5.4e+02 Score=25.93 Aligned_cols=100 Identities=11% Similarity=0.164 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-------EEEEEEEeCCCCCCHHH
Q 011838 312 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-------VLFEYVMLAGVNDSFDD 384 (476)
Q Consensus 312 p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-------V~ieyvLI~GvNDs~ed 384 (476)
..+..+++.+...+.+...+.. .+.++++.++. .|.+ +..-.++=|+ ...+.
T Consensus 89 ~~i~~~~~aGad~It~H~Ea~~--------------~~~~~l~~Ir~-----~G~k~~~~~~~~kaGlAlnP~--Tp~e~ 147 (254)
T PRK14057 89 TAAQACVKAGAHCITLQAEGDI--------------HLHHTLSWLGQ-----QTVPVIGGEMPVIRGISLCPA--TPLDV 147 (254)
T ss_pred HHHHHHHHhCCCEEEEeecccc--------------CHHHHHHHHHH-----cCCCcccccccceeEEEECCC--CCHHH
Confidence 3567788877444445555431 13445555553 3321 2333344455 34555
Q ss_pred HHHHHHHHhcCCCeEEEEeccCCC-CCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 011838 385 AKRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 385 ~~~La~ll~~l~~~VnLIp~nP~~-~~~~~~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
++.+...+. .|-++..+|-. |..|.+...+.++++++.+.++|+.+.|
T Consensus 148 i~~~l~~vD----~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~I 196 (254)
T PRK14057 148 IIPILSDVE----VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKII 196 (254)
T ss_pred HHHHHHhCC----EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceE
Confidence 554444332 67788899975 4568888889999999999888876544
No 197
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.17 E-value=1.7e+02 Score=22.99 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 011838 385 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 385 ~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
.-+++..+..++..|.++.-.+... +..+++..+.+.+.|++.|+++..
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~---~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLL---PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSS---TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhh---hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4457777888888898887665433 445567777888999999987643
No 198
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=30.96 E-value=4.7e+02 Score=27.28 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=58.8
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc--h----H----HHHHHHhcC-C-e-EEEEeeCCCCHHHHhhH
Q 011838 274 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL--V----P----QLKQFLNES-N-C-ALAVSLNATTDEVRNWI 340 (476)
Q Consensus 274 GEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~--~----p----~i~~L~~~~-~-~-~LaISLda~~de~r~~I 340 (476)
|+| ..+.+.+..+.++...|+......++.++ +. . | .+++|.+.+ . + .+-+++-+-.=|+
T Consensus 202 GDp--Y~~q~~~t~~li~e~lg~~~~~~~~~~QS-~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFvsDhlET---- 274 (320)
T COG0276 202 GDP--YPQQCQETTRLIAEALGLPEEEYDLTFQS-RFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFVSDHLET---- 274 (320)
T ss_pred CCc--hHHHHHHHHHHHHHHcCCCchheeEEeec-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchhhhhHHH----
Confidence 555 34578888888888888765666778877 43 1 3 455566654 2 1 2222332222121
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011838 341 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 394 (476)
Q Consensus 341 ~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 394 (476)
+.++-.-.+. ...+.|. ..|.-+|-.||+++.+..|+++++.
T Consensus 275 --------L~Eid~e~~e-~~~~~Gg---~~y~rip~lN~~p~fi~~la~lv~~ 316 (320)
T COG0276 275 --------LYEIDHEYRE-LAEEAGG---KKYVRIPCLNDSPEFIDALADLVRE 316 (320)
T ss_pred --------HHHHHHHHHH-HHHHhCC---ccEEecCCCCCCHHHHHHHHHHHHH
Confidence 2222222222 2233342 3466789999999999999998874
No 199
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.84 E-value=6.7e+02 Score=26.57 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc--ccCCH----HHHHHHHHHHHHhcCCC
Q 011838 242 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE--PLHNV----ENVIKAANIMVHEQGLH 297 (476)
Q Consensus 242 lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE--PLLn~----d~V~~ai~~l~~~~Gl~ 297 (476)
+++.|.++.+... |.+.|-|.+ .+ |+... +...+.++...++.|+.
T Consensus 32 ~~~~e~i~~la~~---------GfdgVE~~~-~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 32 LDPVEAVHKLAEL---------GAYGVTFHD-DDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred cCHHHHHHHHHHh---------CCCEEEecc-cccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 5666666555432 566777875 32 33332 22234455556788986
No 200
>PRK07328 histidinol-phosphatase; Provisional
Probab=29.87 E-value=5.6e+02 Score=25.35 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc-------------C---CHHHHHHHHHHHHHhc-CCCCCCCeEE
Q 011838 242 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-------------H---NVENVIKAANIMVHEQ-GLHFSPRKVT 304 (476)
Q Consensus 242 lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL-------------L---n~d~V~~ai~~l~~~~-Gl~i~~r~It 304 (476)
.+++|+++.... .+++.+.|+.=+ |+ + +++.-++.++.+.++. ++. ..+.
T Consensus 18 ~~~ee~v~~A~~---------~Gl~~i~~TdH~-~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~---Il~G 84 (269)
T PRK07328 18 GTPEEYVQAARR---------AGLKEIGFTDHL-PMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY---VRLG 84 (269)
T ss_pred CCHHHHHHHHHH---------CCCCEEEEecCC-CCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe---EEEE
Confidence 367777766643 367777777522 22 1 2334444555555443 333 2355
Q ss_pred EEeC---CchHHHHHHHhcC--CeEEEEeeCCCC
Q 011838 305 VSTS---GLVPQLKQFLNES--NCALAVSLNATT 333 (476)
Q Consensus 305 VsTN---G~~p~i~~L~~~~--~~~LaISLda~~ 333 (476)
+..+ |..+.++++++.. |+.| .|+|..+
T Consensus 85 iE~~~~~~~~~~~~~~l~~~~~D~vi-gSvH~~~ 117 (269)
T PRK07328 85 IEADYHPGTEEFLERLLEAYPFDYVI-GSVHYLG 117 (269)
T ss_pred EEecccCCcHHHHHHHHHhCCCCeEE-EEEeecC
Confidence 5554 3345667777663 6665 8999754
No 201
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=29.76 E-value=4.4e+02 Score=26.62 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc-cCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch------HH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP-LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV------PQ 313 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP-LLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~------p~ 313 (476)
+.+.+|.++++....++.+..+..+. +.++-.|.| -..++++.+.++.+ .+.|.. +-.--+|.|+. ..
T Consensus 107 ~~t~~e~l~~~~~~i~~a~~~G~~v~-~~~~d~~~~~r~~~~~~~~~~~~~-~~~G~~---~i~l~DT~G~~~P~~v~~l 181 (280)
T cd07945 107 RKTPEEHFADIREVIEYAIKNGIEVN-IYLEDWSNGMRDSPDYVFQLVDFL-SDLPIK---RIMLPDTLGILSPFETYTY 181 (280)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEE-EEEEeCCCCCcCCHHHHHHHHHHH-HHcCCC---EEEecCCCCCCCHHHHHHH
Q ss_pred HHHHHhcC-CeEEEEeeC
Q 011838 314 LKQFLNES-NCALAVSLN 330 (476)
Q Consensus 314 i~~L~~~~-~~~LaISLd 330 (476)
+..+.+.. +..|.++.|
T Consensus 182 ~~~l~~~~~~~~i~~H~H 199 (280)
T cd07945 182 ISDMVKRYPNLHFDFHAH 199 (280)
T ss_pred HHHHHhhCCCCeEEEEeC
No 202
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=29.57 E-value=1.1e+02 Score=27.27 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=18.9
Q ss_pred EEEccCCCCccccccccccccCCC--CCCCCC
Q 011838 434 VFLRLSRGDDQMAACGQLGNPGAI--QAPLLR 463 (476)
Q Consensus 434 v~vR~~~G~di~aaCGqL~~~~~~--~~~~~~ 463 (476)
|-+..+.....|+.|-.++.++++ .+||..
T Consensus 61 vG~I~~~s~~FC~~CNRiRlTsdG~l~~CL~~ 92 (128)
T PF06463_consen 61 VGFISPVSNPFCSSCNRIRLTSDGKLKPCLFS 92 (128)
T ss_dssp EEEE-TTTS--GGG--EEEE-TTSEEESSSS-
T ss_pred EEEEeCCCCCCCCcCCEEEEccCccEEEcccC
Confidence 555566677899999999999998 889876
No 203
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=29.33 E-value=6e+02 Score=25.57 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 351 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 351 ~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
.+++++.+ ..++.|.++.+-+.+.+. ..++.+.+..+++...+.. .++-+...+.. . ..+.+.+..+.+.+++.
T Consensus 112 ~~~~ai~~-~~~~~gi~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~vvg~~l~~~~-~-~~~~~~~~~~~~~A~~~ 185 (325)
T cd01320 112 AVLRGLDE-AEAEFGIKARLILCGLRH--LSPESAQETLELALKYRDK-GVVGFDLAGDE-V-GFPPEKFVRAFQRAREA 185 (325)
T ss_pred HHHHHHHH-HHHhcCCeEEEEEEecCC--CCHHHHHHHHHHHHhccCC-CEEEeecCCCC-C-CCCHHHHHHHHHHHHHC
Confidence 34556665 345567777776655553 2456777777776554321 11222221111 1 12567888888999999
Q ss_pred CCeEEEcc
Q 011838 431 GCTVFLRL 438 (476)
Q Consensus 431 Gi~v~vR~ 438 (476)
|+.+++--
T Consensus 186 g~~v~~H~ 193 (325)
T cd01320 186 GLRLTAHA 193 (325)
T ss_pred CCceEEeC
Confidence 98877643
No 204
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=29.31 E-value=2.3e+02 Score=28.12 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCC-eEEEEeccCCCCCCCC-CCcHHHHHHHHHHHHhCCCeEEE
Q 011838 384 DAKRLIGLVQGIPC-KINLISFNPHCGSQFT-PTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 384 d~~~La~ll~~l~~-~VnLIp~nP~~~~~~~-~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
.++.+.+.+++.+. .|.|+|+.-..|.... ....+.-....++|.++|++|++
T Consensus 180 ~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~ 234 (265)
T COG4822 180 LVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEV 234 (265)
T ss_pred cHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEE
Confidence 46668888887775 7999998766543211 01111224788999999999865
No 205
>PRK14706 glycogen branching enzyme; Provisional
Probab=28.47 E-value=1.4e+02 Score=33.88 Aligned_cols=54 Identities=30% Similarity=0.335 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeccCCC--CC------CCCCC-----cHHHHHHHHHHHHhCCCeEEE
Q 011838 383 DDAKRLIGLVQGIPC-KINLISFNPHC--GS------QFTPT-----TDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 383 ed~~~La~ll~~l~~-~VnLIp~nP~~--~~------~~~~p-----s~e~i~~f~~~L~~~Gi~v~v 436 (476)
+-+++|.++++++++ .|.|+|....+ +. .|..+ +.+++++|.+.+.++|+.|.+
T Consensus 168 ~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 168 ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 455667788888886 78999875432 11 22222 368899999999999999865
No 206
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.34 E-value=2.1e+02 Score=23.25 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeccCCC-CC-----CCCCCc-HHHHHHHHHHHHhCCCeEEE
Q 011838 380 DSFDDAKRLIGLVQGIPCKINLISFNPHC-GS-----QFTPTT-DEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 380 Ds~ed~~~La~ll~~l~~~VnLIp~nP~~-~~-----~~~~ps-~e~i~~f~~~L~~~Gi~v~v 436 (476)
|.+..+.++.+.+. +..|+-+-|.-.. +. .+..++ ++.++.+.+.|++.|+.+..
T Consensus 10 D~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 10 ERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred CCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 56667777777777 3455544443321 11 246677 89999999999999998755
No 207
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.30 E-value=3.8e+02 Score=28.55 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe
Q 011838 382 FDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 382 ~ed~~~La~ll~~l~~~VnLIp 403 (476)
..|+.+|.++|+.++..|+.++
T Consensus 178 ~~d~~ei~~lL~~~Gi~v~~~~ 199 (426)
T cd01972 178 QEDVDEFKRLLNELGLRVNAII 199 (426)
T ss_pred cccHHHHHHHHHHcCCeEEEEe
Confidence 4678888899998888877654
No 208
>PRK12677 xylose isomerase; Provisional
Probab=27.93 E-value=7.5e+02 Score=26.22 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC--cccCCHH----HHHHHHHHHHHhcCCC
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG--EPLHNVE----NVIKAANIMVHEQGLH 297 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG--EPLLn~d----~V~~ai~~l~~~~Gl~ 297 (476)
..++++|+++.+..+ +...|-|.. . .|+...+ ...+.++.+.++.|+.
T Consensus 29 ~~~~~~E~v~~~a~~---------Gf~gVElh~-~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 29 PPLDPVEAVHKLAEL---------GAYGVTFHD-DDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred CCCCHHHHHHHHHHh---------CCCEEEecc-cccCCCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 457888888887653 566777865 4 2332211 1234455556788986
No 209
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.56 E-value=5.7e+02 Score=27.01 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=19.7
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEEE
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKINL 401 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~VnL 401 (476)
++.+.+. ..++.+|.++|+.++.+++.
T Consensus 163 iig~~~~-~~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 163 LIGEFNV-AGELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred EECCCCC-cccHHHHHHHHHHcCCeEEE
Confidence 4555554 45678888999988888774
No 210
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.15 E-value=2.7e+02 Score=23.76 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCC-eEEEEeccCCCCCCCCC-CcHHHHHHHHHHHHhCCCeEEEcc
Q 011838 384 DAKRLIGLVQGIPC-KINLISFNPHCGSQFTP-TTDEKMIEFRNILAGAGCTVFLRL 438 (476)
Q Consensus 384 d~~~La~ll~~l~~-~VnLIp~nP~~~~~~~~-ps~e~i~~f~~~L~~~Gi~v~vR~ 438 (476)
.+++..+.+...++ +|.++|+--..+..... ...++-...+..|++.|+.|....
T Consensus 43 ~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~~~g~~v~~~~ 99 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILEAAGIKVETVL 99 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEehhheecccchhcCCCCCchhHHHHHHHCCCeeEEEe
Confidence 35555555554454 79999975444432211 111123478899999999987643
No 211
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.02 E-value=7.5e+02 Score=25.89 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=98.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHH
Q 011838 239 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 318 (476)
Q Consensus 239 ~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~ 318 (476)
...++.++.++.+....+ -+++.|-+ |-|..+.+. .+.++.+.+ .+.+ ..+...+......+++..
T Consensus 16 ~~~~s~~~k~~ia~~L~~------~Gv~~IEv---G~p~~~~~~-~e~i~~i~~-~~~~---~~v~~~~r~~~~di~~a~ 81 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDE------LGVDVIEA---GFPIASEGE-FEAIKKISQ-EGLN---AEICSLARALKKDIDKAI 81 (363)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEE---eCCCCChHH-HHHHHHHHh-cCCC---cEEEEEcccCHHHHHHHH
Confidence 356888888877765432 26766654 557776443 566665543 3443 234444444456777777
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011838 319 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 398 (476)
Q Consensus 319 ~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 398 (476)
+.+-..+.+.+.+.+-....++ +.+....++.+.+.++. .++.|..+.+.+ ....-.+++.+.++++.+.+.++.
T Consensus 82 ~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~--ak~~G~~v~~~~--eda~r~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 82 DCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEY--AKEHGLIVEFSA--EDATRTDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHH--HHHcCCEEEEEE--eecCCCCHHHHHHHHHHHHhCCCC
Confidence 7763345666665543332233 33334456777777774 567777665543 232224578888888888777653
Q ss_pred EEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC-CCe--EEEccCCC
Q 011838 399 INLISFNPHCGSQFTPTTDEKMIEFRNILAGA-GCT--VFLRLSRG 441 (476)
Q Consensus 399 VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~-Gi~--v~vR~~~G 441 (476)
. +-+-.+.| ...++++.++.+.+++. ++. +..-+..|
T Consensus 157 ~--i~l~DT~G----~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~G 196 (363)
T TIGR02090 157 R--INIADTVG----VLTPQKMEELIKKLKENVKLPISVHCHNDFG 196 (363)
T ss_pred E--EEEeCCCC----ccCHHHHHHHHHHHhcccCceEEEEecCCCC
Confidence 2 22222222 23456677777766653 333 33344444
No 212
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.91 E-value=1.5e+02 Score=36.30 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeccCCC--CC------CCCCC-----cHHHHHHHHHHHHhCCCeEEEc
Q 011838 383 DDAKRLIGLVQGIPC-KINLISFNPHC--GS------QFTPT-----TDEKMIEFRNILAGAGCTVFLR 437 (476)
Q Consensus 383 ed~~~La~ll~~l~~-~VnLIp~nP~~--~~------~~~~p-----s~e~i~~f~~~L~~~Gi~v~vR 437 (476)
+-++++.++++++++ +|.|+|+...+ ++ .|..| +.+++++|.+.+.++|+.|.+-
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 445677899999996 89999985432 21 22222 3789999999999999998763
No 213
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.21 E-value=4.3e+02 Score=26.05 Aligned_cols=64 Identities=17% Similarity=0.386 Sum_probs=36.3
Q ss_pred EEeCCCC--CCHHHHHHHHHHHhcC--CCeEEEEecc--CCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 011838 373 VMLAGVN--DSFDDAKRLIGLVQGI--PCKINLISFN--PHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 373 vLI~GvN--Ds~ed~~~La~ll~~l--~~~VnLIp~n--P~~~~~~~~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
+.|.+|+ .+.+.++++++++.+. +..|-+||.. |..+..+.-....++.+..+.+...|-.+.+
T Consensus 4 irleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 4 IRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 3455555 3678899999999855 4578889953 3332222222223333334444567766544
No 214
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=24.59 E-value=7.4e+02 Score=25.02 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=49.7
Q ss_pred CcHHHHHH----HHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHH
Q 011838 347 YKLGLLIE----TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 422 (476)
Q Consensus 347 ~~le~vle----al~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~ 422 (476)
.+.+++++ ++.+ ...+.|.++.+-+.+++. ++++.+.+.++++...+... ++-+.-.+ ... ..+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~i~~-a~~~~gi~~~li~~~~r~--~~~~~~~~~~~~~~~~~~~~-vvg~~l~~-~e~-~~~~~~~~~ 176 (324)
T TIGR01430 103 ISPDTVVEAVLDGLDE-AERDFGIKSRLILCGMRH--KQPEAAEETLELAKPYKEQT-IVGFGLAG-DER-GGPPPDFVR 176 (324)
T ss_pred CCHHHHHHHHHHHHHH-HHHhcCCeEEEEEEEeCC--CCHHHHHHHHHHHHhhccCc-EEEecCCC-CCC-CCCHHHHHH
Confidence 34555554 5554 345667777666666653 45777888887766543211 12221111 111 123677888
Q ss_pred HHHHHHhCCCeEEEcc
Q 011838 423 FRNILAGAGCTVFLRL 438 (476)
Q Consensus 423 f~~~L~~~Gi~v~vR~ 438 (476)
..+.+++.|+.+++--
T Consensus 177 ~~~~A~~~g~~i~~Ha 192 (324)
T TIGR01430 177 AFAIARELGLHLTVHA 192 (324)
T ss_pred HHHHHHHCCCCeEEec
Confidence 8888999998877643
No 215
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.26 E-value=6e+02 Score=23.84 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=59.6
Q ss_pred EEEeeCCCCHHHHhhHcC----CCCCC---cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011838 325 LAVSLNATTDEVRNWIMP----INRKY---KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397 (476)
Q Consensus 325 LaISLda~~de~r~~I~p----~~~~~---~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 397 (476)
+.++=..++++.|+.++. .+-+. ++++.++.+.. .+..+.++. ++.+ +++++..+++---++ .
T Consensus 31 iVvnD~va~D~~rk~~lk~aaP~gvk~~~~~v~k~i~~i~~--~~~~~~~v~---ll~~----~p~d~~~lve~gv~I-~ 100 (159)
T COG3444 31 IVVNDEVANDDVRKTLLKQAAPPGVKLRFFSVEKAIDVINK--PKYDGQKVF---LLFE----NPQDVLRLVEGGVPI-K 100 (159)
T ss_pred EEEccccccCHHHHHHHHhhcCCceEEEEEEHHHHHHHhcC--CCCCCeEEE---EEEC----CHHHHHHHHhcCCCC-c
Confidence 345555666677766642 22222 45555555543 112223332 2333 678888777633222 1
Q ss_pred eEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 398 KINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 398 ~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
.+|+-..+..+|. ..-.-++++++.|.+ |.+.|+.+.+|.-..+
T Consensus 101 ~iNVG~m~~~~gk~~i~k~vsl~e~D~~af~~-L~~~Gv~~~~r~vP~d 148 (159)
T COG3444 101 TINVGGMAFREGKKQITKAVSLDEKDIAAFKK-LKAKGVEVEVRKVPND 148 (159)
T ss_pred EEEEcCccCCCCcEEeecceeeCHHHHHHHHH-HHhcCcEEEEEECCCC
Confidence 5776665554443 233456788888865 5677999999976654
No 216
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=24.07 E-value=5.8e+02 Score=27.77 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=35.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEE-EeccC-C------CCCCCC-CCcHHHHHHHHHHHHh-CCCeEEEccCCC
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIPCKINL-ISFNP-H------CGSQFT-PTTDEKMIEFRNILAG-AGCTVFLRLSRG 441 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~~~VnL-Ip~nP-~------~~~~~~-~ps~e~i~~f~~~L~~-~Gi~v~vR~~~G 441 (476)
.+|.+.|.. .++.+|.++++.++.+|+. ++-+- . +...+. .........+.+.|++ +|++.......|
T Consensus 195 NiiG~~~~~-gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G 272 (475)
T PRK14478 195 NILGEYNLA-GELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYG 272 (475)
T ss_pred EEEeCCCCC-CCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCc
Confidence 345555543 5677888888888877763 32110 1 011110 0113344556777765 588764333334
No 217
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.05 E-value=4.8e+02 Score=26.65 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011838 283 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 362 (476)
Q Consensus 283 V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~ 362 (476)
+.++++.+.+..+. .++|.|++. ..+++.+.++.+... |-||. .+.+++.++++. .+
T Consensus 182 i~~av~~~r~~~~~---~~~I~VEv~-tleea~eA~~~GaD~--I~LDn---------------~~~e~l~~av~~--~~ 238 (288)
T PRK07428 182 IGEAITRIRQRIPY---PLTIEVETE-TLEQVQEALEYGADI--IMLDN---------------MPVDLMQQAVQL--IR 238 (288)
T ss_pred HHHHHHHHHHhCCC---CCEEEEECC-CHHHHHHHHHcCCCE--EEECC---------------CCHHHHHHHHHH--HH
Confidence 44555555444442 246888776 355666666666323 33442 234566666653 23
Q ss_pred hCCCeEEEEEEEeCCCCCCHHHHHHHH
Q 011838 363 KNNYKVLFEYVMLAGVNDSFDDAKRLI 389 (476)
Q Consensus 363 ~~g~~V~ieyvLI~GvNDs~ed~~~La 389 (476)
+...++.+ ....|+| ++++.+++
T Consensus 239 ~~~~~i~l--eAsGGIt--~~ni~~ya 261 (288)
T PRK07428 239 QQNPRVKI--EASGNIT--LETIRAVA 261 (288)
T ss_pred hcCCCeEE--EEECCCC--HHHHHHHH
Confidence 22334433 3567886 55666655
No 218
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=23.96 E-value=6.5e+02 Score=26.70 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=32.6
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEE-EEeccCC-------CCCCCCC-CcHHHHHHHHHHHHh-CCCeEE
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKIN-LISFNPH-------CGSQFTP-TTDEKMIEFRNILAG-AGCTVF 435 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~Vn-LIp~nP~-------~~~~~~~-ps~e~i~~f~~~L~~-~Gi~v~ 435 (476)
+|.+.+ ...|+++|.++++.++.+++ .++-+.. +...+.- ...+....+.+.|++ .|++..
T Consensus 167 liG~~~-~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 167 YIGDYN-IQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred EEccCC-CcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 454444 45678888889998887775 3331111 0111111 122334566677765 588744
No 219
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.76 E-value=7.2e+02 Score=24.58 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=84.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHh
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 319 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~ 319 (476)
..++.++.++.+....+ -+++.|-+ | =|-.+.+. .+.++.+.+.. - ..++...+.+....+++.++
T Consensus 15 ~~~~~~~k~~i~~~L~~------~Gv~~iEv-g--~~~~~~~~-~~~~~~l~~~~-~---~~~~~~l~r~~~~~v~~a~~ 80 (268)
T cd07940 15 VSLTPEEKLEIARQLDE------LGVDVIEA-G--FPAASPGD-FEAVKRIAREV-L---NAEICGLARAVKKDIDAAAE 80 (268)
T ss_pred CCCCHHHHHHHHHHHHH------cCCCEEEE-e--CCCCCHHH-HHHHHHHHHhC-C---CCEEEEEccCCHhhHHHHHH
Confidence 46788877776655432 26766665 2 24444332 24455454321 1 12355555454555665555
Q ss_pred cC----CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC
Q 011838 320 ES----NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 395 (476)
Q Consensus 320 ~~----~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l 395 (476)
.+ ...+.+.+ +.++....+-........++.+.+.+++ .++.|..+.+...-... -+++.+.++++.+.+.
T Consensus 81 ~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~--a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (268)
T cd07940 81 ALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEY--AKSHGLDVEFSAEDATR--TDLDFLIEVVEAAIEA 155 (268)
T ss_pred hCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHH--HHHcCCeEEEeeecCCC--CCHHHHHHHHHHHHHc
Confidence 43 22333444 3333322222222223345667777774 46677776654332222 3578888888888877
Q ss_pred CCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh
Q 011838 396 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 396 ~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~ 429 (476)
++. -+-+-.+.|. ..++++.++.+.+++
T Consensus 156 G~~--~i~l~DT~G~----~~P~~v~~lv~~l~~ 183 (268)
T cd07940 156 GAT--TINIPDTVGY----LTPEEFGELIKKLKE 183 (268)
T ss_pred CCC--EEEECCCCCC----CCHHHHHHHHHHHHH
Confidence 653 2333233332 345666666666665
No 220
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=5.8e+02 Score=28.42 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCC-CC--------------------
Q 011838 352 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC-GS-------------------- 410 (476)
Q Consensus 352 vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~-~~-------------------- 410 (476)
+++-+.. .++.+++.+|-++=+.||--| ..+.+++-||-..+.+|-+-..++.. |.
T Consensus 365 lLRdI~s--ar~~krPYVi~fvGVNGVGKS-TNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~ 441 (587)
T KOG0781|consen 365 LLRDIMS--ARRRKRPYVISFVGVNGVGKS-TNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVE 441 (587)
T ss_pred HHHHHHH--HHhcCCCeEEEEEeecCcccc-chHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhH
Confidence 4444554 355678888888777777665 46888999998877777666666542 11
Q ss_pred ----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 411 ----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 411 ----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
.|...+......+.+..+..|+.|.+-.+.|+
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR 477 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGR 477 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 12222223334455666777888777666664
No 221
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=23.68 E-value=7.4e+02 Score=24.67 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=56.5
Q ss_pred EEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC
Q 011838 266 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 344 (476)
Q Consensus 266 ~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~ 344 (476)
-.|...|||=|-.-. .+-++ .+.+|++ .-|.|-|+|-+ +.+ . ..|++ |.-.|.++....+..-.+
T Consensus 58 iSvmg~GmGipS~sI-Y~~EL----i~~y~Vk---~iIRvGt~Gal~~~v-~---l~DvV--ia~~A~tds~~~~~~f~~ 123 (236)
T COG0813 58 ISVMGHGMGIPSISI-YSREL----ITDYGVK---KIIRVGTCGALSEDV-K---LRDVV--IAQGASTDSNVNRIRFKP 123 (236)
T ss_pred EEEEEecCCCccHHH-HHHHH----HHHhCcc---eEEEEEccccccCCc-c---cceEE--EeccccCcchhhhcccCc
Confidence 358888999998762 44443 3456664 45899999965 322 1 11333 666677666554443211
Q ss_pred C----CCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC--CCCCHH
Q 011838 345 R----KYKLGLLIETLREELHFKNNYKVLFEYVMLAG--VNDSFD 383 (476)
Q Consensus 345 ~----~~~le~vleal~~~l~~~~g~~V~ieyvLI~G--vNDs~e 383 (476)
. -.+++ +++.+.. ..++.|.++.+--++-.+ +|+..+
T Consensus 124 ~df~~~ad~~-Ll~~a~~-~A~e~gi~~hvgnv~ssD~FY~~~~~ 166 (236)
T COG0813 124 HDFAPIADFE-LLEKAYE-TAKELGIDTHVGNVFSSDLFYNPDTE 166 (236)
T ss_pred ccccccCCHH-HHHHHHH-HHHHhCCceeeeeeeeeecccCCCHH
Confidence 1 11344 4444444 367788777775555443 344433
No 222
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.41 E-value=3.2e+02 Score=30.32 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=37.3
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCC--------CCCCCC-CCcHHHHHHHHHHHH-hCCCeEEEccCCC
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH--------CGSQFT-PTTDEKMIEFRNILA-GAGCTVFLRLSRG 441 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~--------~~~~~~-~ps~e~i~~f~~~L~-~~Gi~v~vR~~~G 441 (476)
++.++| ...|+.++.++|+.++..|+.....-. +..... ....+....+.+.|+ ++|++...-...|
T Consensus 207 liG~~n-~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~G 283 (513)
T TIGR01861 207 YVGEYN-IQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFG 283 (513)
T ss_pred EeCCCC-CccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCC
Confidence 667776 467888899999999888874332100 001110 111233455666676 4788754333344
No 223
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=23.39 E-value=9.6e+02 Score=25.92 Aligned_cols=122 Identities=23% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEeeCCCCHHHHhh--HcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEE
Q 011838 325 LAVSLNATTDEVRNW--IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 402 (476)
Q Consensus 325 LaISLda~~de~r~~--I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLI 402 (476)
+++.||.+..+.++. +.--...++-++.++-+.. +..++. -+.+| +++ +++|.+..+++.+.++.+|.|.
T Consensus 236 i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~-Lv~~Yp-ivsiE----Dpl--~E~Dweg~~~lt~~~g~kvqiv 307 (423)
T COG0148 236 IALALDVAASEFYKDGKYVLEGESLTSEELIEYYLE-LVKKYP-IVSIE----DPL--SEDDWEGFAELTKRLGDKVQIV 307 (423)
T ss_pred eeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHH-HHHhCC-EEEEc----CCC--CchhHHHHHHHHHhhCCeEEEE
Confidence 456677666666653 2211224455677777776 444442 13333 443 3456677777777777666654
Q ss_pred e-----ccCCC---C-------C----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCCcc---------cccccccccc
Q 011838 403 S-----FNPHC---G-------S----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ---------MAACGQLGNP 454 (476)
Q Consensus 403 p-----~nP~~---~-------~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~di---------~aaCGqL~~~ 454 (476)
- -||.- + . ..+--+--+...+.+..+++|+.+.|-..-|..- .-.|||.+.-
T Consensus 308 GDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 308 GDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred CCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 3 13210 0 0 0112233445567788899999988877666432 2389998654
No 224
>PRK00035 hemH ferrochelatase; Reviewed
Probab=22.99 E-value=8.2e+02 Score=24.98 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=59.3
Q ss_pred EEEEEecCC---------cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCc----hH----HHHHHHhcC--CeE-
Q 011838 266 TNVVFMGMG---------EPLHNVENVIKAANIMVHEQGLHFSPRKVTVST-SGL----VP----QLKQFLNES--NCA- 324 (476)
Q Consensus 266 ~nIvf~GmG---------EPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsT-NG~----~p----~i~~L~~~~--~~~- 324 (476)
+.++|+|=| +| ....+.+..+.+.+..|+......++..+ -|. -| .+.++.+.+ .+.
T Consensus 190 ~~llfs~HG~P~~~~~~gd~--Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v 267 (333)
T PRK00035 190 DRLLFSAHGLPQRYIDKGDP--YQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVV 267 (333)
T ss_pred cEEEEecCCCchHHhhcCCC--hHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEE
Confidence 568999855 55 23456666776766666532334455555 242 13 455666654 222
Q ss_pred EEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011838 325 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 394 (476)
Q Consensus 325 LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 394 (476)
+-+++=+-.-|+ +.++-...+. ...+.|.. ++..++++||++.-++.|++.++.
T Consensus 268 ~P~~Fv~D~lEt------------l~ei~~e~~~-~~~~~G~~---~~~~~~~ln~~~~~i~~l~~~v~~ 321 (333)
T PRK00035 268 VPPGFVSDHLET------------LEEIDIEYRE-IAEEAGGE---EFRRIPCLNDSPEFIEALADLVRE 321 (333)
T ss_pred ECCeeeccchhH------------HHHHHHHHHH-HHHHcCCc---eEEECCCCCCCHHHHHHHHHHHHH
Confidence 112222211111 2222222333 23445542 467789999999988888888875
No 225
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=22.52 E-value=1.4e+02 Score=29.89 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCcch---HHHHHHHHhcCCCccCCchhhcC---CC--HHHHHHHHHHh
Q 011838 120 FTELQQWVRSHAFRPGQ---ALMLWKRLYGDDIWAHCTDELEG---LN--KDFKKMLSEHA 172 (476)
Q Consensus 120 ~~el~~~~~~~g~~~~r---a~qi~~~l~~~~~~~~~~~~~~~---l~--~~~r~~L~~~~ 172 (476)
..+|.+|+.+-.-|-|. +..||.|++++|+ +...|+|.. .| .++-+.|+..|
T Consensus 3 R~~LA~wlt~~~Np~faRv~VNRvW~~~fGrGl-V~p~dD~g~~~~~PshPeLLd~La~~F 62 (266)
T PF07587_consen 3 RLALADWLTSPDNPLFARVIVNRVWQHLFGRGL-VEPVDDFGPQGNPPSHPELLDWLAAEF 62 (266)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHcCCcC-cCCHhhccCCCCCCCCHHHHHHHHHHH
Confidence 57899999876656554 3899999999997 677777754 44 48888888777
No 226
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=22.36 E-value=9.6e+02 Score=25.51 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCc--hHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGL--VPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 357 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~--~p~i~~L~~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~ 357 (476)
+.+.++++.+.+..|+ .+...|- +..+.++.... +-.+.+=+-+.| .+++.+.+.+.
T Consensus 257 ~e~~~a~~~l~~~~gi-------~ve~agaa~lAa~~~~~~~~~~~~Vv~ilsGgn-------------~d~~~~~~~~~ 316 (409)
T TIGR02079 257 GAVCTTILDLYNLEGI-------VAEPAGALSIAALERLGEEIKGKTVVCVVSGGN-------------NDIERTEEIRE 316 (409)
T ss_pred HHHHHHHHHHHHhcCc-------eecchHHHHHHHHHhhhhhcCCCeEEEEECCCC-------------CCHHHHHHHHH
Confidence 5778888877777664 4555553 23333333221 111111111222 23445555555
Q ss_pred HHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-------CCCCCcHHHHHHHHHHHHhC
Q 011838 358 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-------QFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 358 ~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-------~~~~ps~e~i~~f~~~L~~~ 430 (476)
+- +...++.+.+++. +| |.+..+.++.+.+...+..|-.+.|+...+. .+..+++++++++.+.|++.
T Consensus 317 ~~-l~~~~r~~~~~v~-ip---drPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 317 RS-LLYEGLKHYFIVR-FP---QRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAA 391 (409)
T ss_pred HH-HHhcCCEEEEEEE-eC---CCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 42 3456777777654 45 5666788887744433334444445422111 24566789999999999999
Q ss_pred CCeEEEcc
Q 011838 431 GCTVFLRL 438 (476)
Q Consensus 431 Gi~v~vR~ 438 (476)
|+.+...+
T Consensus 392 Gy~~~~~~ 399 (409)
T TIGR02079 392 DIHYEDIN 399 (409)
T ss_pred CCCeEECC
Confidence 99876543
No 227
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=22.31 E-value=2e+02 Score=32.38 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCC-eEEEEeccCCCC--------CCCCC-----CcHHHHHHHHHHHHhCCCeEEE
Q 011838 385 AKRLIGLVQGIPC-KINLISFNPHCG--------SQFTP-----TTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 385 ~~~La~ll~~l~~-~VnLIp~nP~~~--------~~~~~-----ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
+++|.++|+++|+ .|.|+|+...+. ..|.. -+.++++++.+.+.++|+.|.+
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~Vil 224 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVIL 224 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4456688888886 788888654321 11222 2368999999999999999865
No 228
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.30 E-value=2e+02 Score=29.27 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=24.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 276 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP 276 (476)
++.+..++.+.+..+.+ .+++||++.+ |+|
T Consensus 87 ~d~n~~~i~~~l~~~~~------~Gi~~ilaLr-GDp 116 (291)
T COG0685 87 RDRNRIEIISILKGAAA------LGIRNILALR-GDP 116 (291)
T ss_pred cCCCHHHHHHHHHHHHH------hCCceEEEec-CCC
Confidence 56788888888877654 4899999999 999
No 229
>PRK08639 threonine dehydratase; Validated
Probab=21.78 E-value=7.4e+02 Score=26.39 Aligned_cols=131 Identities=10% Similarity=0.109 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCc--hHHHHHHHhc--CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHH
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGL--VPQLKQFLNE--SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 356 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~--~p~i~~L~~~--~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal 356 (476)
+.+.++++.+.+..|+ .+...|- +..+..+... +.-.+ +=+-+.+ ..+..+-+-+
T Consensus 268 ~ei~~a~~~l~~~~gi-------~~e~sga~~lAal~~~~~~~~~~~vv-~v~sGgn-------------~d~~~~~~~~ 326 (420)
T PRK08639 268 GAVCTTILELYNKEGI-------VAEPAGALSIAALELYKDEIKGKTVV-CVISGGN-------------NDIERMPEIK 326 (420)
T ss_pred HHHHHHHHHHHHhcCc-------eecchHHHHHHHHHhhhhhcCCCeEE-EEeCCCC-------------CCHHHHHHHH
Confidence 6788888888777775 3444442 2233332221 22121 1112222 1234444444
Q ss_pred HHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCC-------CCCCCcHHHHHHHHHHHHh
Q 011838 357 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-------QFTPTTDEKMIEFRNILAG 429 (476)
Q Consensus 357 ~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~-------~~~~ps~e~i~~f~~~L~~ 429 (476)
++. ....++.+.+++. +| |.+..+.++.+.+...+..|-.+.|+...+. .+..+++++++++.+.|++
T Consensus 327 ~~~-l~~~~r~~~~~v~-ip---drPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 327 ERS-LIYEGLKHYFIVN-FP---QRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEA 401 (420)
T ss_pred HHH-HHhcCCEEEEEEE-eC---CCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 442 3456777777654 45 4566677777733332223333344322111 2466778999999999999
Q ss_pred CCCeEEEc
Q 011838 430 AGCTVFLR 437 (476)
Q Consensus 430 ~Gi~v~vR 437 (476)
.|+++...
T Consensus 402 ~Gy~~~~~ 409 (420)
T PRK08639 402 FGPSYIDI 409 (420)
T ss_pred CCCceEEC
Confidence 99987754
No 230
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=5.2e+02 Score=27.16 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=51.1
Q ss_pred EEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCH
Q 011838 303 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 382 (476)
Q Consensus 303 ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ 382 (476)
--+.+-|..+.++..++.+-..+.++.+..+- | .....++.+++.+.++. +...|.++.+-...+. .|+..
T Consensus 8 ell~pag~l~~l~~ai~~GADaVY~G~~~~~~--R----~~a~nfs~~~l~e~i~~--ah~~gkk~~V~~N~~~-~~~~~ 78 (347)
T COG0826 8 ELLAPAGNLEDLKAAIAAGADAVYIGEKEFGL--R----RRALNFSVEDLAEAVEL--AHSAGKKVYVAVNTLL-HNDEL 78 (347)
T ss_pred eeecCCCCHHHHHHHHHcCCCEEEeCCccccc--c----cccccCCHHHHHHHHHH--HHHcCCeEEEEecccc-ccchh
Confidence 34566677778888877773345677663331 1 11234678888888884 6778877654433333 34555
Q ss_pred HHHHHHHHHHhcCC
Q 011838 383 DDAKRLIGLVQGIP 396 (476)
Q Consensus 383 ed~~~La~ll~~l~ 396 (476)
+.+.+..+.+.+++
T Consensus 79 ~~~~~~l~~l~e~G 92 (347)
T COG0826 79 ETLERYLDRLVELG 92 (347)
T ss_pred hHHHHHHHHHHHcC
Confidence 55666666665554
No 231
>PRK15063 isocitrate lyase; Provisional
Probab=21.59 E-value=3.9e+02 Score=29.00 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCC-CCCcHHHHHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF-TPTTDEKMIEFRNI 426 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~-~~ps~e~i~~f~~~ 426 (476)
.+++.++-.+.| .. .-.-+++|. +. .+.++++++++-++.. ...+++.||-.+...| ...++++++.|++.
T Consensus 263 Gld~AI~Ra~AY-a~-GAD~iw~Et----~~-~d~ee~~~fa~~v~~~-~P~~~layn~sPsfnW~~~~~~~~~~~f~~e 334 (428)
T PRK15063 263 GIEQAIARGLAY-AP-YADLIWCET----ST-PDLEEARRFAEAIHAK-FPGKLLAYNCSPSFNWKKNLDDATIAKFQRE 334 (428)
T ss_pred CHHHHHHHHHHH-hc-CCCEEEeCC----CC-CCHHHHHHHHHhhccc-CccceeecCCCCCcccccccCHHHHHHHHHH
Confidence 477777777663 33 323344442 22 3577788777766531 1345566654433332 23678999999999
Q ss_pred HHhCCCeEEE
Q 011838 427 LAGAGCTVFL 436 (476)
Q Consensus 427 L~~~Gi~v~v 436 (476)
|.+.|+...+
T Consensus 335 L~~~Gy~~~~ 344 (428)
T PRK15063 335 LGAMGYKFQF 344 (428)
T ss_pred HHHcCceEEE
Confidence 9999998544
No 232
>PRK00035 hemH ferrochelatase; Reviewed
Probab=21.39 E-value=3.9e+02 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEecCCcccCCHHHHHHHHHHHH
Q 011838 266 TNVVFMGMGEPLHNVENVIKAANIMV 291 (476)
Q Consensus 266 ~nIvf~GmGEPLLn~d~V~~ai~~l~ 291 (476)
..|.++-+|+|- +.+.|...+..+-
T Consensus 6 ~~vll~n~G~P~-~~~~v~~fl~~~~ 30 (333)
T PRK00035 6 DAVLLLNLGGPE-TPEDVRPFLKNFL 30 (333)
T ss_pred eEEEEEeCCCCC-CHHHHHHHHHHHc
Confidence 478899999999 7788888877553
No 233
>PRK12313 glycogen branching enzyme; Provisional
Probab=21.31 E-value=2.5e+02 Score=31.74 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCC-eEEEEeccCCC--CC------CCCC-----CcHHHHHHHHHHHHhCCCeEEE
Q 011838 385 AKRLIGLVQGIPC-KINLISFNPHC--GS------QFTP-----TTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 385 ~~~La~ll~~l~~-~VnLIp~nP~~--~~------~~~~-----ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
+++|.+.|+++|+ .|.|+|+...+ +. .|.. -+.+++++|.+.+.++|+.|.+
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4556788888886 78888864332 11 2222 2378999999999999999865
No 234
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.27 E-value=4.7e+02 Score=25.28 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEE-EeCCch-H-HHHHHH
Q 011838 242 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV-STSGLV-P-QLKQFL 318 (476)
Q Consensus 242 lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItV-sTNG~~-p-~i~~L~ 318 (476)
.+.++.++.+....++.+..+.. ..+.++...-|-.+++++.+.++.+ .+.|.. .|.+ .|.|.. | .+.+++
T Consensus 108 ~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~----~i~l~Dt~G~~~P~~v~~li 181 (265)
T cd03174 108 KSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKAL-EEAGAD----EISLKDTVGLATPEEVAELV 181 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHHH-HHcCCC----EEEechhcCCcCHHHHHHHH
Confidence 45566666666655554443222 2344444455567888999988865 466664 3444 788873 3 455544
Q ss_pred hc----CCeEEEEeeCCCCH
Q 011838 319 NE----SNCALAVSLNATTD 334 (476)
Q Consensus 319 ~~----~~~~LaISLda~~d 334 (476)
.. .+- +.+++|.-|+
T Consensus 182 ~~l~~~~~~-~~~~~H~Hn~ 200 (265)
T cd03174 182 KALREALPD-VPLGLHTHNT 200 (265)
T ss_pred HHHHHhCCC-CeEEEEeCCC
Confidence 32 221 4567776553
No 235
>PRK05402 glycogen branching enzyme; Provisional
Probab=21.05 E-value=2.6e+02 Score=32.32 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeccCCC--C------CCCCC-----CcHHHHHHHHHHHHhCCCeEEE
Q 011838 383 DDAKRLIGLVQGIPC-KINLISFNPHC--G------SQFTP-----TTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 383 ed~~~La~ll~~l~~-~VnLIp~nP~~--~------~~~~~-----ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
+-+++|..+|+++++ .|.|+|+...+ + ..|.. -+.+++++|.+.+.++|+.|.+
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 334456678888886 78888864322 1 12222 2368899999999999999866
No 236
>PRK01076 L-rhamnose isomerase; Provisional
Probab=21.03 E-value=5e+02 Score=28.03 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec--CCcccC----CHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHH
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGEPLH----NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQ 313 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G--mGEPLL----n~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~ 313 (476)
+..+++|..+.+..+....... .+| |+...= .||.-. .++.....++ .+++.|++ +-++.|=+
T Consensus 68 ~aR~~~El~~D~~~~~~L~pg~-~~v-nLH~~y~~~~~~vdrd~~~p~~f~~w~~-~Ak~~Glg-----lDfNpn~F--- 136 (419)
T PRK01076 68 KARNADELRADLEKALSLIPGK-HRL-NLHAIYLESDTPVDRDEIEPEHFKNWVE-WAKENGLG-----LDFNPTCF--- 136 (419)
T ss_pred CCCCHHHHHHHHHHHHHhcCCC-Cce-eeecccccCCCcccccccCcccHHHHHH-HHHHcCCC-----cCcCcccC---
Confidence 4568999999998887654211 112 222221 132221 1223333334 56778876 33444433
Q ss_pred HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCC
Q 011838 314 LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 381 (476)
Q Consensus 314 i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs 381 (476)
........+||-+|++++|+...-.+ .+.++-.++ +-++.|.+..+++-+=.|.||-
T Consensus 137 -----sh~~~k~G~SLs~pD~~iR~fwI~H~-----~~c~~I~~~-~g~~lGs~~~~niWipDG~kd~ 193 (419)
T PRK01076 137 -----SHPLSADGFTLSHPDPEIRQFWIEHC-----KASRRISAY-FGEELGTPCVMNIWIPDGMKDI 193 (419)
T ss_pred -----CCccccCCCcccCCCHHHHHHHHHHH-----HHHHHHHHH-HHHHhCCccceeEEeCCCCCCC
Confidence 11122335799999999998664321 123333332 3457787776666666788853
No 237
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=20.99 E-value=5.9e+02 Score=26.42 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=65.1
Q ss_pred HHHhcC--CeEEEEeeCCCCHHHHhhHc----CCCCCC---cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHH
Q 011838 316 QFLNES--NCALAVSLNATTDEVRNWIM----PINRKY---KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 386 (476)
Q Consensus 316 ~L~~~~--~~~LaISLda~~de~r~~I~----p~~~~~---~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~ 386 (476)
.|.... +..+.++=..++++.++.++ |.+-+. +.++.++.+++ ....+.++. ++++ +++++.
T Consensus 182 ~W~~~~~~~~IiVvdD~vA~D~~~k~~lk~A~P~gvk~~i~sv~~a~~~l~~--~~~~~~~vl---il~k----~p~d~~ 252 (322)
T PRK15088 182 RWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNN--PKYAGERVM---LLFT----NPTDVE 252 (322)
T ss_pred HHhhccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEHHHHHHHHhC--CCCCCCeEE---EEEC----CHHHHH
Confidence 444443 33344666677777777665 332222 45555544442 112233432 3344 688888
Q ss_pred HHHHHHhcCCC-eEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 387 RLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 387 ~La~ll~~l~~-~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+|++ .+++. .||+-.....++. ..-.-++++++.|++... .|++++++....+
T Consensus 253 ~l~~--~g~~i~~iNvG~m~~~~g~~~i~~~v~l~~ee~~~l~~l~~-~Gv~v~~q~vP~d 310 (322)
T PRK15088 253 RLVE--GGVKITSVNIGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNA-RGIELEVRKVSSD 310 (322)
T ss_pred HHHH--cCCCCCeEEECCcccCCCCeEEecceeeCHHHHHHHHHHHH-cCCEEEEEECcCC
Confidence 8765 23332 6777665444443 223456899998887765 5999999876654
No 238
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.78 E-value=3.6e+02 Score=29.66 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc--hHHHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL--VPQLKQFL 318 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~--~p~i~~L~ 318 (476)
+.+.+|+++.+....++.+..+..+. |..+-.+-.+++++.+.++ ...+.|.. +-.--+|+|. ...+.+++
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~v~---~~~ed~~r~~~~~l~~~~~-~~~~~Ga~---~i~l~DTvG~~~P~~~~~lv 178 (488)
T PRK09389 106 KKTREEVLETAVEAVEYAKDHGLIVE---LSGEDASRADLDFLKELYK-AGIEAGAD---RICFCDTVGILTPEKTYELF 178 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEE---EEEeeCCCCCHHHHHHHHH-HHHhCCCC---EEEEecCCCCcCHHHHHHHH
Q ss_pred hcC--CeEEEEeeCCCCH
Q 011838 319 NES--NCALAVSLNATTD 334 (476)
Q Consensus 319 ~~~--~~~LaISLda~~d 334 (476)
... ...+.+++|.-|+
T Consensus 179 ~~l~~~~~v~l~~H~HND 196 (488)
T PRK09389 179 KRLSELVKGPVSIHCHND 196 (488)
T ss_pred HHHHhhcCCeEEEEecCC
No 239
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.77 E-value=6.6e+02 Score=26.46 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-H-HHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P-QLKQFL 318 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-p-~i~~L~ 318 (476)
+.+.+|.++.+....++.... +. .|.|..+-..-.+++++.++++.+ .+.|.. +-.-.+|+|.. | .+.+++
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~--G~-~v~~~~ed~~r~~~~~l~~~~~~~-~~~Ga~---~I~l~DT~G~~~P~~v~~lv 180 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDH--GL-YVSFSAEDASRTDLDFLIEFAKAA-EEAGAD---RVRFCDTVGILDPFTMYELV 180 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CC-eEEEEeccCCCCCHHHHHHHHHHH-HhCCCC---EEEEeccCCCCCHHHHHHHH
Confidence 468899999888776665543 33 255544333445678999988865 456664 33456899973 3 444443
Q ss_pred h----cCCeEEEEeeCCCC
Q 011838 319 N----ESNCALAVSLNATT 333 (476)
Q Consensus 319 ~----~~~~~LaISLda~~ 333 (476)
. ..++. |++|.-|
T Consensus 181 ~~l~~~~~~~--l~~H~Hn 197 (378)
T PRK11858 181 KELVEAVDIP--IEVHCHN 197 (378)
T ss_pred HHHHHhcCCe--EEEEecC
Confidence 3 22444 5555444
No 240
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=20.38 E-value=3.7e+02 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHh---cCCCCCCCeEEEEeCCch
Q 011838 242 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE---QGLHFSPRKVTVSTSGLV 311 (476)
Q Consensus 242 lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~---~Gl~i~~r~ItVsTNG~~ 311 (476)
...+++++...+. +.+|.|.| |+.-.+-+.++++ +++. .+-. ---..|.|.|-.
T Consensus 64 ~Gi~gvl~~Y~~~----------~~~v~l~G---PT~fapiI~~a~~-~a~~~~~~~~~--Y~iLlIlTDG~i 120 (146)
T PF07002_consen 64 QGIDGVLEAYRKA----------LPKVQLSG---PTNFAPIINHAAK-IAKQSNQNGQQ--YFILLILTDGQI 120 (146)
T ss_pred cCHHHHHHHHHHH----------hhheEECC---CccHHHHHHHHHH-HHhhhccCCce--EEEEEEeccccc
Confidence 3456666555442 45788988 8765444444555 4432 1111 012568899964
No 241
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=20.28 E-value=60 Score=27.46 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=21.3
Q ss_pred cccCCCCHHHHHHHHH---HCCCCcchHHHHHH
Q 011838 113 VLLKGMSFTELQQWVR---SHAFRPGQALMLWK 142 (476)
Q Consensus 113 ~~~~~l~~~el~~~~~---~~g~~~~ra~qi~~ 142 (476)
..-++|+.+|+++|.. .+|+++.|+..|-+
T Consensus 56 ~~rY~Ls~eEf~~W~~av~rhge~aLraT~~q~ 88 (90)
T PF06627_consen 56 CRRYGLSEEEFESWQRAVDRHGENALRATRLQK 88 (90)
T ss_dssp HHCTTSSHHHHHHHHHHCCT--TTSS-TCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3568999999999985 57888888866543
No 242
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.20 E-value=1.9e+02 Score=30.18 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHH-HHHHhc-CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYKLGL 351 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i-~~L~~~-~~~~LaISLda~~de~r~~I~p~~~~~~le~ 351 (476)
+.+.++++.+.+... ++.|.|.|+.+. ..+ +++-++ +.-.+.++..+..... .. .++.
T Consensus 60 ~kL~~~i~~~~~~~~----P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v~~~gf~~~~---~~------G~~~ 126 (398)
T PF00148_consen 60 EKLREAIKEIAEKYK----PKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPVHTPGFSGSY---SQ------GYDA 126 (398)
T ss_dssp HHHHHHHHHHHHHHS----TSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEEE--TTSSSH---HH------HHHH
T ss_pred hhHHHHHHHHHhcCC----CcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEEECCCccCCc---cc------hHHH
Confidence 567777776655432 245777776542 233 333333 2334445555542111 11 2455
Q ss_pred HHHHHHHHHHh--hCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 352 LIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 352 vleal~~~l~~--~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.++++-+++.. ....+-.++ ++.+.+....++.++.++++.++..|+...
T Consensus 127 a~~~l~~~~~~~~~~~~~~~VN--iiG~~~~~~~d~~el~~lL~~~Gi~v~~~~ 178 (398)
T PF00148_consen 127 ALRALAEQLVKPPEEKKPRSVN--IIGGSPLGPGDLEELKRLLEELGIEVNAVF 178 (398)
T ss_dssp HHHHHHHHHTTGTTTTSSSEEE--EEEESTBTHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHhhcccccccCCCCceE--EecCcCCCcccHHHHHHHHHHCCCceEEEe
Confidence 66655543312 111112333 455556666889999999999988777654
No 243
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=20.17 E-value=3.4e+02 Score=20.98 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCCCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcC---CCHHHHHHHHHH
Q 011838 109 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEG---LNKDFKKMLSEH 171 (476)
Q Consensus 109 ~~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~---l~~~~r~~L~~~ 171 (476)
...++|+...+.++|...+. |..+-+|++|.++--+.+. +.+++++.. ++++..+++...
T Consensus 4 ~~~~invNta~~~~L~~~ip--gig~~~a~~Il~~R~~~g~-~~s~~dL~~v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 4 EGTRVNINTATAEELQRAMN--GVGLKKAEAIVSYREEYGP-FKTVEDLKQVPGIGNSLVEKNLAV 66 (69)
T ss_pred CCCeeECcCCCHHHHHhHCC--CCCHHHHHHHHHHHHHcCC-cCCHHHHHcCCCCCHHHHHHHHhh
Confidence 34568888999998888644 4556689999999755543 346666644 677777776553
Done!