Query 011838
Match_columns 476
No_of_seqs 336 out of 2669
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1.5E-82 5E-87 662.4 37.2 343 110-457 15-364 (404)
2 2yx0_A Radical SAM enzyme; pre 100.0 5.8E-30 2E-34 260.3 20.5 258 157-430 17-305 (342)
3 2z2u_A UPF0026 protein MJ0257; 99.9 2.2E-27 7.6E-32 237.6 10.9 266 160-452 2-301 (311)
4 3c8f_A Pyruvate formate-lyase 99.9 2.8E-25 9.5E-30 212.1 21.4 198 221-435 26-244 (245)
5 1tv8_A MOAA, molybdenum cofact 99.9 9.1E-21 3.1E-25 192.0 26.0 233 214-464 14-282 (340)
6 3can_A Pyruvate-formate lyase- 99.8 7.8E-20 2.7E-24 169.1 18.2 156 267-436 6-180 (182)
7 2a5h_A L-lysine 2,3-aminomutas 99.8 1.4E-18 4.8E-23 181.9 20.9 215 199-440 103-332 (416)
8 3t7v_A Methylornithine synthas 99.8 6.8E-19 2.3E-23 179.3 14.1 229 154-412 2-247 (350)
9 3iix_A Biotin synthetase, puta 99.8 8.9E-18 3.1E-22 170.1 21.0 191 218-429 57-258 (348)
10 1r30_A Biotin synthase; SAM ra 99.6 2.7E-14 9.2E-19 146.5 24.3 188 221-429 73-275 (369)
11 2qgq_A Protein TM_1862; alpha- 99.5 2.9E-13 9.9E-18 135.5 20.6 183 213-411 3-200 (304)
12 1olt_A Oxygen-independent copr 99.4 3.4E-11 1.2E-15 127.1 23.4 201 223-434 61-284 (457)
13 4fhd_A Spore photoproduct lyas 98.1 2.7E-05 9.2E-10 80.0 13.4 161 218-393 111-281 (368)
14 2l69_A Rossmann 2X3 fold prote 84.0 7.8 0.00027 31.9 9.4 72 349-436 35-106 (134)
15 2cw6_A Hydroxymethylglutaryl-C 77.3 50 0.0017 32.0 14.7 177 240-442 22-213 (298)
16 3pdi_B Nitrogenase MOFE cofact 50.3 30 0.001 35.9 7.3 109 281-403 78-203 (458)
17 3lfj_A Manxb, phosphotransfera 50.1 65 0.0022 29.5 8.7 61 381-442 106-170 (187)
18 1ydn_A Hydroxymethylglutaryl-C 49.2 1.8E+02 0.0062 27.7 16.9 166 240-430 21-196 (295)
19 1qgu_B Protein (nitrogenase mo 47.7 30 0.001 36.6 6.9 109 281-403 127-251 (519)
20 1vsq_C Mannose-specific phosph 42.7 1.8E+02 0.0062 25.8 10.4 83 348-442 64-151 (165)
21 3p3v_A PTS system, N-acetylgal 41.6 1.1E+02 0.0039 27.2 8.7 62 381-443 87-152 (163)
22 1nrz_A PTS system, sorbose-spe 39.0 1.8E+02 0.0061 25.9 9.6 83 348-442 61-148 (164)
23 2ztj_A Homocitrate synthase; ( 37.6 3.2E+02 0.011 27.3 15.4 175 240-442 20-202 (382)
24 1ble_A Fructose permease; phos 37.5 1.7E+02 0.0058 26.0 9.2 83 348-442 62-149 (163)
25 1mio_B Nitrogenase molybdenum 34.2 1E+02 0.0036 31.6 8.4 108 281-403 82-202 (458)
26 3e02_A Uncharacterized protein 33.2 3.6E+02 0.012 26.4 14.4 159 241-425 28-219 (311)
27 1aj0_A DHPS, dihydropteroate s 33.1 2.3E+02 0.0077 27.4 10.1 68 240-321 33-110 (282)
28 3inp_A D-ribulose-phosphate 3- 32.7 3.1E+02 0.011 25.9 10.8 137 265-434 56-196 (246)
29 3eye_A PTS system N-acetylgala 31.1 1.5E+02 0.0053 26.5 7.9 60 381-442 90-153 (168)
30 2f06_A Conserved hypothetical 30.8 38 0.0013 28.7 3.7 70 365-435 66-136 (144)
31 3e96_A Dihydrodipicolinate syn 26.2 4.5E+02 0.015 25.4 12.1 123 241-389 29-158 (316)
32 2v9d_A YAGE; dihydrodipicolini 23.9 5.2E+02 0.018 25.3 13.4 126 241-389 48-182 (343)
33 2duy_A Competence protein come 22.9 51 0.0018 24.9 2.7 56 108-171 14-72 (75)
34 1xw3_A Sulfiredoxin; retroredu 22.1 53 0.0018 27.6 2.8 78 398-475 13-105 (110)
35 3hcn_A Ferrochelatase, mitocho 21.9 6E+02 0.02 25.3 11.6 102 274-394 209-323 (359)
36 3lg3_A Isocitrate lyase; conse 21.5 1.4E+02 0.005 30.8 6.5 81 347-436 268-350 (435)
37 3p14_A L-rhamnose isomerase; T 21.1 5.6E+02 0.019 26.3 10.7 125 240-394 72-215 (424)
38 1g94_A Alpha-amylase; beta-alp 20.8 1.2E+02 0.004 30.9 5.7 55 382-436 13-83 (448)
39 2hmc_A AGR_L_411P, dihydrodipi 20.2 6.2E+02 0.021 24.8 14.2 123 241-390 43-177 (344)
40 1zrj_A E1B-55KDA-associated pr 20.1 93 0.0032 22.4 3.4 24 111-134 6-29 (50)
41 1vr6_A Phospho-2-dehydro-3-deo 20.0 2E+02 0.0068 28.8 7.0 60 376-435 113-174 (350)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1.5e-82 Score=662.41 Aligned_cols=343 Identities=39% Similarity=0.611 Sum_probs=308.2
Q ss_pred CCCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEEecCCCC
Q 011838 110 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGT 189 (476)
Q Consensus 110 ~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt 189 (476)
..+++|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++||||||++|+.|.++|.+..++++..+.|.|||
T Consensus 15 ~~~~~l~~~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~--~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dgt 92 (404)
T 3rfa_A 15 DGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYC--CDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGT 92 (404)
T ss_dssp --CEEGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHSC--CCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTSC
T ss_pred cCCCCcccCCHHHHHHHHHHcCCcchHHHHHHHHHHhcC--CCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCCC
Confidence 357899999999999999999999999999999999999 679999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHhcc----cCCCe
Q 011838 190 RKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGSI 265 (476)
Q Consensus 190 ~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~lt~~EIveqv~~~~~~l~~----~~~~i 265 (476)
+||||++ ||..||+|+||+ ++|.|+|||+|+||||+|.||+++..++.++++++||++|+..+..++.. .+.++
T Consensus 93 ~K~l~~l-dg~~iEtV~i~~-~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i 170 (404)
T 3rfa_A 93 IKWAIAV-GDQRVETVYIPE-DDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPI 170 (404)
T ss_dssp EEEEEEE-TTEEEEEEEEEC-SSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSC
T ss_pred EEEEEEc-CCceEEEEEEec-CCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCc
Confidence 9999999 999999999998 68999999999999999999999999889999999999999988776642 12469
Q ss_pred EEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCC
Q 011838 266 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 345 (476)
Q Consensus 266 ~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~ 345 (476)
++|+||||||||+|++++.++++.+.+..|++++.++++|+|||+.|.+++|++..++.|+||||+++++.|++|+|+++
T Consensus 171 ~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~ 250 (404)
T 3rfa_A 171 TNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINK 250 (404)
T ss_dssp SEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGG
T ss_pred cEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCCHHHHHHhcCCcc
Confidence 99999999999999999999999886657999999999999999999999999988888999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhCCC---eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHH
Q 011838 346 KYKLGLLIETLREELHFKNNY---KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 422 (476)
Q Consensus 346 ~~~le~vleal~~~l~~~~g~---~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~ 422 (476)
+++++++++++++| ..+++. +|+++|+||||+||+++++++|++++++++++||||||||+++..|++|+.+++++
T Consensus 251 ~~~le~vl~ai~~~-~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~~~~~~~~ps~e~i~~ 329 (404)
T 3rfa_A 251 KYNIETFLAAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDR 329 (404)
T ss_dssp TSCHHHHHHHHHHH-HHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCCTTCCCCBCCHHHHHH
T ss_pred CCCHHHHHHHHHHH-HHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCCCCCCCCCCCHHHHHH
Confidence 99999999999874 667777 99999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHhCCCeEEEccCCCCccccccccccccCCC
Q 011838 423 FRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 457 (476)
Q Consensus 423 f~~~L~~~Gi~v~vR~~~G~di~aaCGqL~~~~~~ 457 (476)
|+++|+++|+.|+||.++|+||+||||||+.+...
T Consensus 330 f~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~~~~ 364 (404)
T 3rfa_A 330 FSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVID 364 (404)
T ss_dssp HHHHHHHTTCEEEECCCCCC---------------
T ss_pred HHHHHHHcCCcEEEcCCCCcccccccccchhhhhh
Confidence 99999999999999999999999999999877543
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=5.8e-30 Score=260.33 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=200.4
Q ss_pred hcCCCHHHHHHHHH-HhccccceEeEEEecCCCCeEEEEEecCCCeeEEEEeccCCCceEEEEEec-CCCCCCCCCCCCC
Q 011838 157 LEGLNKDFKKMLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ-VGCAMNCQFCYTG 234 (476)
Q Consensus 157 ~~~l~~~~r~~L~~-~~~~~~~~~~~~~~s~Dgt~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq-~GCnl~C~FC~tg 234 (476)
.+|+|+++|+.|.+ .|.+.. .. ....--++|.|++. .+|..+++++++. .++..++++.+ .|||++|.||+++
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~-~~-s~~~~~~~~~~~l~--~~~~~~~~~~~~~-~~~~~l~i~~~~~gCnl~C~fC~~~ 91 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG-RH-SGVKLCHWLKKSLT--EGRFCYKQKFYGI-HSHRCLQMTPVLAWCTHNCIFCWRP 91 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB-TT-EEECCCTTHHHHHH--HCCCCHHHHHHCC-CGGGEEEEESCSSCCSBCCTTCCCS
T ss_pred cCcchHHHHHHHhhCCceEec-cc-cceEeccccHhhhc--CCCccceeEEeee-cCCCeEEEEeChhhhhCcCcccCCC
Confidence 47899999999988 565432 11 11112377888776 7888999999886 56778888888 5999999999987
Q ss_pred CCC------CccCCCHHHHHHHHHHHHHHhccc--------------CCCeEEEEEecCCcccCCHHHHHHHHHHHHHhc
Q 011838 235 RMG------LKRHLTAAEIVEQAVFARRLLSSE--------------VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 294 (476)
Q Consensus 235 ~~g------~~r~lt~~EIveqv~~~~~~l~~~--------------~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~ 294 (476)
... ..+.++++|+++++....+.+... ...+++|+|+|+||||+++ .+.++++.+. +.
T Consensus 92 ~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-~l~~ll~~~~-~~ 169 (342)
T 2yx0_A 92 MENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-YMGDLVEEFH-KR 169 (342)
T ss_dssp SSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHHH-HT
T ss_pred CCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-hHHHHHHHHH-HC
Confidence 532 347799999999998765432111 0246889999669999996 6889999764 55
Q ss_pred CCCCCCCeEEEEeCCchHH-HHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 295 GLHFSPRKVTVSTSGLVPQ-LKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 295 Gl~i~~r~ItVsTNG~~p~-i~~L~~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
|+ +++++|||+.++ +++|.+.+ ...+.||||+++++.|+++++.+.++++++++++++. ..+.+.++.++
T Consensus 170 g~-----~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~--l~~~g~~v~i~ 242 (342)
T 2yx0_A 170 GF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL--MRDLPTRTVVR 242 (342)
T ss_dssp TC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHH--HTTCSSEEEEE
T ss_pred CC-----cEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHH--HHhCCCCEEEE
Confidence 76 499999999865 66777653 5678999999999999999987667889999999997 35678899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCC-----CCCCCcHHHHHHHHHHHHhC
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS-----QFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~-----~~~~ps~e~i~~f~~~L~~~ 430 (476)
+++++|.||+ +++++++++++++ .+|+++||+|.+.. .+..|+.+++.+|.+.+.+.
T Consensus 243 ~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~ 305 (342)
T 2yx0_A 243 LTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKH 305 (342)
T ss_dssp EEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTT
T ss_pred EEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHh
Confidence 9999999986 4889999999875 58999999987543 35678899999999999876
No 3
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.2e-27 Score=237.64 Aligned_cols=266 Identities=16% Similarity=0.214 Sum_probs=178.9
Q ss_pred CCHHHHHHHHHH-hccccceEeEEEecCCCCeEEEEEecCCCeeEEEEeccCCCceEEEEEec-CCCCCCCCCCCCCCC-
Q 011838 160 LNKDFKKMLSEH-AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ-VGCAMNCQFCYTGRM- 236 (476)
Q Consensus 160 l~~~~r~~L~~~-~~~~~~~~~~~~~s~Dgt~K~l~~l~DG~~IEsVlip~~~~r~tlCVSsq-~GCnl~C~FC~tg~~- 236 (476)
.|+.+++.|... |.+.. .....--+.|.+.+. .+|..++.++++. ..+.+++++++ .|||++|.||+++..
T Consensus 2 ~~~~~~~~l~~~gy~~~~---~s~~~~~~w~~~~l~--~~~~~~~~~~~~~-~~~~~l~i~~t~~~Cn~~C~fC~~~~~~ 75 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDG---HTAVKLCGWVRKKML--EDKNCYKSKFYGI-ETHRCIQCTPSVIWCQQNCIFCWRVLPR 75 (311)
T ss_dssp CCHHHHHHHHTTTCEEET---TEEEECCTTHHHHHT--TCCCCHHHHHHCC-CGGGEEEEESCSSCCSCC----------
T ss_pred CchHHHHHHHhcCceeec---ccceeeccChHhhhc--CCCceEEEEEeee-cCCCeEEeccChhHHhCcCcccCCCCCC
Confidence 467777888764 43322 111111245555443 6788888888775 46788999999 699999999997741
Q ss_pred --C-------CccCCCHHHHHHHHHHHHHHhccc---------------CCCeEEEEEecCCcccCCHHHHHHHHHHHHH
Q 011838 237 --G-------LKRHLTAAEIVEQAVFARRLLSSE---------------VGSITNVVFMGMGEPLHNVENVIKAANIMVH 292 (476)
Q Consensus 237 --g-------~~r~lt~~EIveqv~~~~~~l~~~---------------~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~ 292 (476)
+ ..+.++++|+++++....+.+... ...+++|+|+|+||||++. .+.++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~~-~l~~li~~~~- 153 (311)
T 2z2u_A 76 DIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLYP-YLDELIKIFH- 153 (311)
T ss_dssp ------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHHH-
T ss_pred cccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccchh-hHHHHHHHHH-
Confidence 1 236799999999887654321100 1246789999449999985 5888998664
Q ss_pred hcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEE
Q 011838 293 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 372 (476)
Q Consensus 293 ~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~iey 372 (476)
+.|+ +++++|||+.++..+.+ +...+.||||+++++.|+++++. +++++++++++++. + .+.+ ++.+++
T Consensus 154 ~~g~-----~~~l~TNG~~~~~l~~L--~~~~v~isld~~~~~~~~~i~~~-~~~~~~~v~~~i~~-l-~~~g-~v~i~~ 222 (311)
T 2z2u_A 154 KNGF-----TTFVVSNGILTDVIEKI--EPTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDI-L-KEKK-RTCIRT 222 (311)
T ss_dssp HTTC-----EEEEEECSCCHHHHHHC--CCSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHH-H-TTSS-SEEEEE
T ss_pred HCCC-----cEEEECCCCCHHHHHhC--CCCEEEEEeecCCHHHHHHHhCC-ccchHHHHHHHHHH-H-HhcC-CEEEEE
Confidence 4576 49999999985432222 44578899999999999999876 44679999999997 3 5567 899999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCC-CeEEEEeccCCCCCCC-----CCCcHHHHHHHHHHHHh-CCCeEEEccCCCCccc
Q 011838 373 VMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQF-----TPTTDEKMIEFRNILAG-AGCTVFLRLSRGDDQM 445 (476)
Q Consensus 373 vLI~GvNDs~ed~~~La~ll~~l~-~~VnLIp~nP~~~~~~-----~~ps~e~i~~f~~~L~~-~Gi~v~vR~~~G~di~ 445 (476)
++++|+|| ++.++++++++++ ..|+++||+|.++..+ ..|+.+++.+|.+.+.+ .|+.+. |....
T Consensus 223 ~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~-----~~~~~ 294 (311)
T 2z2u_A 223 TLIRGYND---DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLI-----DDSED 294 (311)
T ss_dssp EECTTTTC---CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEE-----EEEGG
T ss_pred EEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceEE-----eccCc
Confidence 99999998 6888888888876 4799999999866543 57889999999999987 676553 44445
Q ss_pred ccccccc
Q 011838 446 AACGQLG 452 (476)
Q Consensus 446 aaCGqL~ 452 (476)
..|..+.
T Consensus 295 ~~~~l~~ 301 (311)
T 2z2u_A 295 SRVALLQ 301 (311)
T ss_dssp GTEEEEE
T ss_pred ceEEEEe
Confidence 5666554
No 4
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.94 E-value=2.8e-25 Score=212.13 Aligned_cols=198 Identities=24% Similarity=0.391 Sum_probs=161.3
Q ss_pred cCCCCCCCCCCCCCCC---CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCC
Q 011838 221 QVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~ 297 (476)
+.|||++|.||+.+.. +..+.++++++++++....+..+ .++..|.|+| |||+++++.+.++++.+. +.|+.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~i~~~G-GEP~l~~~~l~~l~~~~~-~~~~~ 100 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMN---ASGGGVTASG-GEAILQAEFVRDWFRACK-KEGIH 100 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHT---STTCEEEEEE-SCGGGGHHHHHHHHHHHH-TTTCC
T ss_pred eCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhc---CCCCeEEEEC-CCcCCCHHHHHHHHHHHH-HcCCc
Confidence 5699999999998642 23467899999999876554331 2467899999 999999887889999764 55764
Q ss_pred CCCCeEEEEeCCch----HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEE
Q 011838 298 FSPRKVTVSTSGLV----PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 373 (476)
Q Consensus 298 i~~r~ItVsTNG~~----p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyv 373 (476)
+++.|||+. +.+.++++..+ .+.||+++.+++.++++++.. +++++++++. +.+.|.++.+.++
T Consensus 101 -----i~i~Tng~~~~~~~~~~~l~~~~~-~v~isld~~~~~~~~~~~~~~----~~~~~~~i~~--l~~~g~~v~i~~~ 168 (245)
T 3c8f_A 101 -----TCLDTNGFVRRYDPVIDELLEVTD-LVMLDLKQMNDEIHQNLVGVS----NHRTLEFAKY--LANKNVKVWIRYV 168 (245)
T ss_dssp -----EEEEECCCCCCCCHHHHHHHHTCS-EEEEECCCSSHHHHHHHHSSC----SHHHHHHHHH--HHHHTCCEEEEEE
T ss_pred -----EEEEeCCCcCcCHHHHHHHHHhCC-EEEEeCCCCCHHHhhhccCCC----HHHHHHHHHH--HHhcCCEEEEEEe
Confidence 999999953 46777777644 478999999999999998742 4899999997 4567889999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeccCCCCC------------CCCCCcHHHHHHHHHHHHhCCCeEE
Q 011838 374 MLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGS------------QFTPTTDEKMIEFRNILAGAGCTVF 435 (476)
Q Consensus 374 LI~GvNDs~ed~~~La~ll~~l~--~~VnLIp~nP~~~~------------~~~~ps~e~i~~f~~~L~~~Gi~v~ 435 (476)
+++|.||+.+++.++++++++++ ..+++.||+|.++. .+++|+.++++++.+.+++.|+.|+
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 244 (245)
T 3c8f_A 169 VVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM 244 (245)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence 99999999999999999999887 47899999986532 3467889999999999999999864
No 5
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.88 E-value=9.1e-21 Score=192.05 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=166.1
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--------CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHH
Q 011838 214 TTVCVSSQVGCAMNCQFCYTGRM--------GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 285 (476)
Q Consensus 214 ~tlCVSsq~GCnl~C~FC~tg~~--------g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ 285 (476)
..++++.+.+||++|.||+.... .....++.+++.+.+..+.+ .++..|.|+| ||||++++ +.+
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~------~g~~~i~~tG-GEPll~~~-l~~ 85 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE------LGVKKIRITG-GEPLMRRD-LDV 85 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH------TTCCEEEEES-SCGGGSTT-HHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH------CCCCEEEEeC-CCccchhh-HHH
Confidence 36788889999999999997651 12356899998888776543 3678899999 99999975 678
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011838 286 AANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 363 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~ 363 (476)
+++.+.+..++ ..+++.|||+. +.+.+|.+.+...+.||||+.+++.++++++.. .++++++++++. +.+
T Consensus 86 li~~~~~~~~~----~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~--~~~~~v~~~i~~--l~~ 157 (340)
T 1tv8_A 86 LIAKLNQIDGI----EDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRN--IKATTILEQIDY--ATS 157 (340)
T ss_dssp HHHHHTTCTTC----CEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSC--CCHHHHHHHHHH--HHH
T ss_pred HHHHHHhCCCC----CeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCC--CCHHHHHHHHHH--HHH
Confidence 88866433232 26999999984 455667676655678999999999999988632 368999999997 466
Q ss_pred CCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCC-C---CCCc-HHHHHHHHHHHHh--------C
Q 011838 364 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ-F---TPTT-DEKMIEFRNILAG--------A 430 (476)
Q Consensus 364 ~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~-~---~~ps-~e~i~~f~~~L~~--------~ 430 (476)
.|.++.+.+++++|.|+. ++.+++++++++++.+.++.+.|.++.. + ...+ .+.++.+.+.... .
T Consensus 158 ~g~~v~i~~vv~~g~n~~--ei~~~~~~~~~~g~~~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 235 (340)
T 1tv8_A 158 IGLNVKVNVVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFG 235 (340)
T ss_dssp TTCEEEEEEEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSCEEEECCSSTT
T ss_pred CCCCEEEEEEEeCCCCHH--HHHHHHHHHHhcCCeEEEEEeeEcCCCccchhhcCCCHHHHHHHHHhhCCccccccCCCC
Confidence 788999999999998864 7999999999998888888888876432 2 1233 3434444433210 1
Q ss_pred CCeEEEcc-----------CCCCccccccccccccCCC--CCCCCCC
Q 011838 431 GCTVFLRL-----------SRGDDQMAACGQLGNPGAI--QAPLLRV 464 (476)
Q Consensus 431 Gi~v~vR~-----------~~G~di~aaCGqL~~~~~~--~~~~~~~ 464 (476)
+.....+. +.....|++|..++..+++ .||+...
T Consensus 236 ~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~dG~v~pC~~~~ 282 (340)
T 1tv8_A 236 EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFAT 282 (340)
T ss_dssp CSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEESSSCCS
T ss_pred CCCeEEEECCCCeEEEEECCCCCccccCCCcEEECCCccEEeCCCCC
Confidence 11112221 1123467889888888777 7887543
No 6
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.84 E-value=7.8e-20 Score=169.09 Aligned_cols=156 Identities=20% Similarity=0.320 Sum_probs=128.2
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC
Q 011838 267 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 344 (476)
Q Consensus 267 nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~ 344 (476)
.|+|+| ||||++++.+.++++.+ ++.|+. ++++|||+. +.++++++..+ .+.||||+++++.|+++++..
T Consensus 6 ~v~~tG-GEPll~~~~~~~l~~~~-~~~g~~-----~~l~TNG~l~~~~~~~l~~~~d-~v~isld~~~~~~~~~~~g~~ 77 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRC-GQQGIH-----RAVDTTLLARKETVDEVMRNCE-LLLIDLKSMDSTVHQTFCDVP 77 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHH-HHTTCC-----EEEECTTCCCHHHHHHHHHTCS-EEEEECCCSCHHHHHHHHSSC
T ss_pred EEEEEc-ccccCCHHHHHHHHHHH-HHCCCc-----EEEECCCCCCHHHHHHHHhhCC-EEEEECCCCCHHHHHHHhCCC
Confidence 577999 99999998777999865 456775 999999985 35677776644 467999999999999999742
Q ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC-C--CeEEEEeccCCCCCC----------
Q 011838 345 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI-P--CKINLISFNPHCGSQ---------- 411 (476)
Q Consensus 345 ~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l-~--~~VnLIp~nP~~~~~---------- 411 (476)
++.++++++. +.+.+.++.+++++++|+||+.+++.+++++++++ + ..++++||+|.+...
T Consensus 78 ----~~~i~~~i~~--l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 78 ----NELILKNIRR--VAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ----SHHHHHHHHH--HHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ----HHHHHHHHHH--HHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcc
Confidence 4899999997 35678899999999999999999999999999988 6 479999999975432
Q ss_pred --CCCCcHHH--HHHHHHHHHhCCCeEEE
Q 011838 412 --FTPTTDEK--MIEFRNILAGAGCTVFL 436 (476)
Q Consensus 412 --~~~ps~e~--i~~f~~~L~~~Gi~v~v 436 (476)
+++|+.++ ++++++.++++|+.+++
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 35677777 99999999999999887
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.80 E-value=1.4e-18 Score=181.90 Aligned_cols=215 Identities=17% Similarity=0.175 Sum_probs=150.7
Q ss_pred CCeeEEEEeccCCCceEEEEEecCCCCCCCCCCCCCCCCC--ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcc
Q 011838 199 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 276 (476)
Q Consensus 199 G~~IEsVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~--~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEP 276 (476)
+..++.+..++ ++ +++++.+.+||++|.||+.+.... .+.++.+++.+.+..+.+ ..++..|+|+| |||
T Consensus 103 ~~~~~gl~hry-p~--~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~-----~~gi~~V~ltG-GEP 173 (416)
T 2a5h_A 103 DSPVPGLTHRY-PD--RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRN-----TPQVRDVLLSG-GDA 173 (416)
T ss_dssp SCSBTTEECCS-SS--EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHT-----CTTCCEEEEEE-SCT
T ss_pred cCcccCccccC-CC--EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHh-----cCCCcEEEEEC-CCC
Confidence 45677777766 34 566666899999999999876322 246899988877765432 13688999999 999
Q ss_pred cCCHH-HHHHHHHHHHHhcCCCCCCCeEEEEeCCc-------hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 277 LHNVE-NVIKAANIMVHEQGLHFSPRKVTVSTSGL-------VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 277 LLn~d-~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~-------~p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
|++.+ .+.++++.+.+..++ ..+++.|||. .+++.+.+... ..+.||+|+.++ ++++
T Consensus 174 ll~~d~~L~~il~~l~~~~~v----~~i~i~Tng~~~~p~~it~e~l~~L~~~-~~v~Isl~~~~~---~ei~------- 238 (416)
T 2a5h_A 174 LLVSDETLEYIIAKLREIPHV----EIVRIGSRTPVVLPQRITPELVNMLKKY-HPVWLNTHFNHP---NEIT------- 238 (416)
T ss_dssp TSSCHHHHHHHHHHHHTSTTC----CEEEEECSHHHHCGGGCCHHHHHHHGGG-CSEEEEECCCSG---GGCC-------
T ss_pred CCCCHHHHHHHHHHHHhcCCc----cEEEEEecccccccccCCHHHHHHHHhc-CcEEEEEecCCH---HHHh-------
Confidence 99976 577888876543344 3699999992 14444444333 345689988765 2232
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCC-CCCCCCCCcHHHHHHHHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH-CGSQFTPTTDEKMIEFRNIL 427 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~-~~~~~~~ps~e~i~~f~~~L 427 (476)
++++++++. +.+.|..+.+++++++|+||+.+++.++++++..+++....+.+.|. .+..+...+.++..++.+.+
T Consensus 239 -~~v~~ai~~--L~~aGi~v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l 315 (416)
T 2a5h_A 239 -EESTRACQL--LADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGL 315 (416)
T ss_dssp -HHHHHHHHH--HHHTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTT
T ss_pred -HHHHHHHHH--HHHcCCEEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHH
Confidence 789999997 46788899999999999999999999999999988876655555553 44444334455555565566
Q ss_pred HhC--C--CeEEEccCC
Q 011838 428 AGA--G--CTVFLRLSR 440 (476)
Q Consensus 428 ~~~--G--i~v~vR~~~ 440 (476)
++. | ++.+++...
T Consensus 316 ~~~~~G~~~p~~v~~~p 332 (416)
T 2a5h_A 316 RGHTSGYCVPTFVVDAP 332 (416)
T ss_dssp BTTBCGGGCCEEEEEET
T ss_pred HHHCCCCCCceEEEECC
Confidence 543 4 345665544
No 8
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.78 E-value=6.8e-19 Score=179.28 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=158.0
Q ss_pred chhhcCCC-HHHHHHHHHHhccccceEeEEEecCC-CCeEEEEEecC-------CCeeEEEEeccCCCceEEEEEecCCC
Q 011838 154 TDELEGLN-KDFKKMLSEHAEFRALSLKDILTSSD-GTRKILFMLDD-------GLVIETVVIPCNRGRTTVCVSSQVGC 224 (476)
Q Consensus 154 ~~~~~~l~-~~~r~~L~~~~~~~~~~~~~~~~s~D-gt~K~l~~l~D-------G~~IEsVlip~~~~r~tlCVSsq~GC 224 (476)
|++|+|++ +++++++.+...+...+......+.| ++.+.|+.+.| |..|. + ..-|..+.||
T Consensus 2 ~~~m~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~---~-------~~~i~~t~~C 71 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVF---L-------NCFIYFSTYC 71 (350)
T ss_dssp ----------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEE---E-------EEEEEEECCC
T ss_pred hhhHhHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEE---E-------EEeeecCCCc
Confidence 57888887 77777776655444333333333333 35555665554 33221 1 1125567999
Q ss_pred CCCCCCCCCCCCC-C-ccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCC--HHHHHHHHHHHHHhcCCCCC
Q 011838 225 AMNCQFCYTGRMG-L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHN--VENVIKAANIMVHEQGLHFS 299 (476)
Q Consensus 225 nl~C~FC~tg~~g-~-~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn--~d~V~~ai~~l~~~~Gl~i~ 299 (476)
+++|.||...... . ...++++||++++..+.+ .+++.|+|+| || |+.+ .+.+.++++.+.+..|+.
T Consensus 72 ~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik~~~~i~-- 142 (350)
T 3t7v_A 72 KNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG------AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVKEELGLP-- 142 (350)
T ss_dssp CCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT------SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHHHHHCSC--
T ss_pred CCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH------CCCCEEEEee-CCCCccccCHHHHHHHHHHHHhhcCce--
Confidence 9999999965432 2 224899999999976532 4788999998 88 9874 688899999887666765
Q ss_pred CCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC
Q 011838 300 PRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 377 (476)
Q Consensus 300 ~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~G 377 (476)
++++ .|.. +.+++|.+.+-..+.+++++.+++.|+++.| ++++++.+++++. ..+.|.++ ...+|-|
T Consensus 143 ---i~~s-~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i~~--a~~~Gi~v--~~~~i~G 211 (350)
T 3t7v_A 143 ---IMIS-PGLMDNATLLKAREKGANFLALYQETYDTELYRKLRV---GQSFDGRVNARRF--AKQQGYCV--EDGILTG 211 (350)
T ss_dssp ---EEEE-CSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHST---TCCHHHHHHHHHH--HHHHTCEE--EEEEEES
T ss_pred ---EEEe-CCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCeE--ccceEee
Confidence 6654 4543 4677788777445668999999999999987 3578999999996 46778764 4567778
Q ss_pred CCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC
Q 011838 378 VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF 412 (476)
Q Consensus 378 vNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~ 412 (476)
.+++.+++.+.++++++++. .|.+.+|+|.+++++
T Consensus 212 lget~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l 247 (350)
T 3t7v_A 212 VGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPL 247 (350)
T ss_dssp SSCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTT
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcC
Confidence 89999999999999999976 599999999887754
No 9
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.78 E-value=8.9e-18 Score=170.07 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=146.8
Q ss_pred EEecCCCCCCCCCCCCCCCC--Cc-cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCc-ccCCHHHHHHHHHHHHHh
Q 011838 218 VSSQVGCAMNCQFCYTGRMG--LK-RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHE 293 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg~~g--~~-r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGE-PLLn~d~V~~ai~~l~~~ 293 (476)
|+.+.|||++|.||+..... .. ..++++|+++++..+.+ .+++.|+|+| || |+++++.+.++++.+.+.
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~------~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~ 129 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ------FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKM 129 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH------TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTT
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhc
Confidence 44589999999999965432 11 24899999999987643 3688999999 99 999988999999977544
Q ss_pred cCCCCCCCeEEEEeCCc-h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGL-V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~-~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
++. +++ |+|. . +.+++|.+.+...+.+++++.+++.|+++.|.. ++++++++++. +.+.|.+ +.
T Consensus 130 -~~~-----i~~-s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~---~~~~~~~~i~~--~~~~Gi~--v~ 195 (348)
T 3iix_A 130 -GVA-----VTL-SLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDT---SFENRLNCLLT--LKELGYE--TG 195 (348)
T ss_dssp -SCE-----EEE-ECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTS---CHHHHHHHHHH--HHHTTCE--EE
T ss_pred -Cce-----EEE-ecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCc---CHHHHHHHHHH--HHHhCCe--ec
Confidence 553 664 4454 3 456777777744567999999999999998753 78999999996 4667764 56
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHh
Q 011838 372 YVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILAG 429 (476)
Q Consensus 372 yvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~~ 429 (476)
+.++.|. +++.+++.++++++++++. .+.+.||+|.+++.+ .+++.+++.+....++.
T Consensus 196 ~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~ 258 (348)
T 3iix_A 196 AGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRI 258 (348)
T ss_dssp ECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHH
T ss_pred cceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 6778888 7999999999999998875 688999999987653 45667777766665553
No 10
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.64 E-value=2.7e-14 Score=146.48 Aligned_cols=188 Identities=15% Similarity=0.200 Sum_probs=143.4
Q ss_pred cCCCCCCCCCCCCCCC---C--CccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-ccc-CCHHHHHHHHHHHHHh
Q 011838 221 QVGCAMNCQFCYTGRM---G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPL-HNVENVIKAANIMVHE 293 (476)
Q Consensus 221 q~GCnl~C~FC~tg~~---g--~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-EPL-Ln~d~V~~ai~~l~~~ 293 (476)
+.|||++|.||..+.. + ..+.++++||++.+..+.+ .+++.|.|.|.| ||. +..+.+.++++.+. +
T Consensus 73 t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik-~ 145 (369)
T 1r30_A 73 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA------AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-A 145 (369)
T ss_dssp CSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH------TTCSEEEEEECCSSCCTTTHHHHHHHHHHHH-H
T ss_pred CCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH------cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHH-H
Confidence 7999999999997652 1 1345899999998876543 257788888743 565 46788999998765 4
Q ss_pred cCCCCCCCeEEEEeCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 294 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 294 ~Gl~i~~r~ItVsTNG~~--p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
.|+. +++ |||+. +.+++|.+.+-..+.++|++ +++.++++.+ ..++++++++++. +.+.|.+ +.
T Consensus 146 ~g~~-----i~~-t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~~--a~~~Gi~--v~ 211 (369)
T 1r30_A 146 MGLE-----ACM-TLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLEK--VRDAGIK--VC 211 (369)
T ss_dssp TTSE-----EEE-ECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHHH--HHHHHCE--EE
T ss_pred cCCe-----EEE-ecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCe--ee
Confidence 5664 665 99974 46778888775567899999 8999999876 3578999999997 3555654 55
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CeEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHh
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQGIP---CKINLISFNPHCGSQF---TPTTDEKMIEFRNILAG 429 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~l~---~~VnLIp~nP~~~~~~---~~ps~e~i~~f~~~L~~ 429 (476)
..+|.|.+++.+++.+++++++.++ ..|.+.+|.|.+++.+ .+++.+++.++...++.
T Consensus 212 ~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHH
T ss_pred eeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 6688899999999999999999885 2777888888887654 56777777777666554
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.54 E-value=2.9e-13 Score=135.55 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=117.7
Q ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCccCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCC------HHHHHH
Q 011838 213 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVIK 285 (476)
Q Consensus 213 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn------~d~V~~ 285 (476)
+.++++.++.|||++|.||..+.. +..+..+++++++++..+.+ .++..|+|+| ++++.. .+.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~------~G~~ei~l~g-~~~~~yG~~~~~~~~l~~ 75 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK------EGKKEIILVA-QDTTSYGIDLYRKQALPD 75 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH------TTCCEEEEEC-TTGGGTTHHHHSSCCHHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHH------CCCcEEEEEe-EcccccCCCCCcHHHHHH
Confidence 467889999999999999998753 44578899999999987643 2678899988 554431 234666
Q ss_pred HHHHHHHhcCCCCCCCeEEE-EeCCc--hHH-HHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011838 286 AANIMVHEQGLHFSPRKVTV-STSGL--VPQ-LKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 359 (476)
Q Consensus 286 ai~~l~~~~Gl~i~~r~ItV-sTNG~--~p~-i~~L~~~~--~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~ 359 (476)
+++.+.+..|+. .+.+ +||+. .++ ++.+.+.+ -..+.+++++.+++.++++ ++.++.++++++++.
T Consensus 76 Ll~~l~~~~gi~----~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m---~r~~t~e~~~~~i~~- 147 (304)
T 2qgq_A 76 LLRRLNSLNGEF----WIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM---GRTKSSEELKKMLSS- 147 (304)
T ss_dssp HHHHHHTSSSSC----EEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT---TCCSCHHHHHHHHHH-
T ss_pred HHHHHHhcCCCc----EEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH-
Confidence 677664433553 4555 46653 344 55555555 3467899999999998874 456889999999997
Q ss_pred HHhhCCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q 011838 360 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 411 (476)
Q Consensus 360 l~~~~g~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~ 411 (476)
+ .+....+.+.+.+|-|+ +++++++.++.+++++++. .+++.+|.|.+++.
T Consensus 148 l-~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~ 200 (304)
T 2qgq_A 148 I-RERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTV 200 (304)
T ss_dssp H-HHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----
T ss_pred H-HhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCCh
Confidence 3 44222244555566565 5889999999999998875 79999999988764
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.39 E-value=3.4e-11 Score=127.13 Aligned_cols=201 Identities=11% Similarity=0.185 Sum_probs=140.5
Q ss_pred CCCCCCCCCCCCCCC-Cc---cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011838 223 GCAMNCQFCYTGRMG-LK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 297 (476)
Q Consensus 223 GCnl~C~FC~tg~~g-~~---r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL-n~d~V~~ai~~l~~~~Gl~ 297 (476)
+|+.+|.||...... .. +....+++++++....+.+.. .++..|.|.| |+|++ +.+.+.++++.+.+..++.
T Consensus 61 fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~--~~i~~i~fgG-Gtpt~l~~~~l~~ll~~i~~~~~~~ 137 (457)
T 1olt_A 61 FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG--RHVSQLHWGG-GTPTYLNKAQISRLMKLLRENFQFN 137 (457)
T ss_dssp EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTT--CCEEEEEEEE-SCGGGSCHHHHHHHHHHHHHHSCEE
T ss_pred CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCC--CceEEEEEeC-CCcccCCHHHHHHHHHHHHHhCCCC
Confidence 599999999976431 11 123356777777665443321 3588888888 99985 6778888888776543321
Q ss_pred CCCCeEEEEeCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCe-EEEEEE
Q 011838 298 FSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYV 373 (476)
Q Consensus 298 i~~r~ItVsTNG~--~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~-V~ieyv 373 (476)
....++++||.- . +.++.|.+.+-..|.+++.+.+++..+.+. +.++.++++++++. +++.|.. +.+..+
T Consensus 138 -~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~---R~~~~~~~~~ai~~--~r~~G~~~v~~dlI 211 (457)
T 1olt_A 138 -ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN---REQDEEFIFALLNH--AREIGFTSTNIDLI 211 (457)
T ss_dssp -EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT---CCCCHHHHHHHHHH--HHHTTCCSCEEEEE
T ss_pred -CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCcEEEEEE
Confidence 113589999974 2 456666666656788999999999988764 45789999999996 4667765 665544
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCCC--------CCCCcHH----HHHHHHHHHHhCCCeE
Q 011838 374 M-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ--------FTPTTDE----KMIEFRNILAGAGCTV 434 (476)
Q Consensus 374 L-I~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~~--------~~~ps~e----~i~~f~~~L~~~Gi~v 434 (476)
+ +|| ++.+++.+.++++..++. +|.+.+|.+.++.. ...|+.+ .++.+.+.|.+.|+..
T Consensus 212 ~GlPg--et~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 284 (457)
T 1olt_A 212 YGLPK--QTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQF 284 (457)
T ss_dssp ESCTT--CCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCCCC--CCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3 455 778999999999988865 78888888766542 2345543 3445667888899864
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.09 E-value=2.7e-05 Score=79.98 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=103.3
Q ss_pred EEecCCCCCCCCCCCCC-CCCCc----cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccC---CHHHHHHHHHH
Q 011838 218 VSSQVGCAMNCQFCYTG-RMGLK----RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH---NVENVIKAANI 289 (476)
Q Consensus 218 VSsq~GCnl~C~FC~tg-~~g~~----r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLL---n~d~V~~ai~~ 289 (476)
++.-.||.++|.||+.. ..+.. -....+|+++++....+. .......|.+.++.+|+. .+..+.++|+.
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~---~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~ 187 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINE---RAPEITRFEAACTSDIVGIDHLTHSLKKAIEF 187 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHH---HTTSCEEEESCSSBCHHHHHTTTCHHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhh---cCCCceEEEEEcCCCcchhhHHHhHHHHHHHH
Confidence 45569999999999942 22221 245678999887653221 123455565555678863 12245566776
Q ss_pred HHHhcCCCCCCCeEEEEeCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeE
Q 011838 290 MVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 368 (476)
Q Consensus 290 l~~~~Gl~i~~r~ItVsTNG~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V 368 (476)
+.+..+. .+++.|=+.. ..+.++...+.+.+++||.. +++.+.+-|. .-+.++=+++++. +.+.|.++
T Consensus 188 l~~~~~~-----~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~--aps~~~RL~Ai~~--l~~aGipv 256 (368)
T 4fhd_A 188 IGATDYG-----RLRFVTKYEHVDHLLDARHNGKTRFRFSINS--RYVINHFEPG--TSSFDGRLAAARK--VAGAGYKL 256 (368)
T ss_dssp HHHCSSE-----EEEEEESCCCCGGGTTCCCTTCEEEEEEECC--HHHHHHHCTT--SCCHHHHHHHHHH--HHHTTCEE
T ss_pred HHhCCCc-----eEEEEeCCcCHHHHHhcCcCCceEEEEEEcC--HHHHHHcCCC--CCCHHHHHHHHHH--HHHCCCeE
Confidence 6543332 4889998863 33333333346788899975 6777777774 3468899999998 47889998
Q ss_pred EEEE-EEeCCCCCCHHHHHHHHHHHh
Q 011838 369 LFEY-VMLAGVNDSFDDAKRLIGLVQ 393 (476)
Q Consensus 369 ~iey-vLI~GvNDs~ed~~~La~ll~ 393 (476)
.+.. .+||+ +|..++..++.+.+.
T Consensus 257 ~v~iaPIiP~-~~~~e~y~~lle~l~ 281 (368)
T 4fhd_A 257 GFVVAPIYRH-EGWERGYFELFQELA 281 (368)
T ss_dssp EEEEEEECCC-TTHHHHHHHHHHHHH
T ss_pred EEEEeCcCCC-CCCHHHHHHHHHHHH
Confidence 7665 46787 555677777776443
No 14
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=83.99 E-value=7.8 Score=31.93 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 011838 349 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 428 (476)
Q Consensus 349 le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~ 428 (476)
..++.+.+++ +.++++..+.+ +++ |+.+-+++.++|.+.++..|-+|-|.. +..++++|....+
T Consensus 35 pqelkdsiee-lvkkynativv--vvv----ddkewaekairfvkslgaqvliiiydq---------dqnrleefsrevr 98 (134)
T 2l69_A 35 PQELKDSIEE-LVKKYNATIVV--VVV----DDKEWAEKAIRFVKSLGAQVLIIIYDQ---------DQNRLEEFSREVR 98 (134)
T ss_dssp HHHHHHHHHH-HTTCCCCEEEE--EEC----SSHHHHHHHHHHHHHHCCCCEEEEECS---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCeEEE--EEE----ccHHHHHHHHHHHHhcCCeEEEEEEeC---------chhHHHHHHHHHH
Confidence 5678888887 55655544332 222 668889999999999998887777753 4678999999999
Q ss_pred hCCCeEEE
Q 011838 429 GAGCTVFL 436 (476)
Q Consensus 429 ~~Gi~v~v 436 (476)
..|+.|.-
T Consensus 99 rrgfevrt 106 (134)
T 2l69_A 99 RRGFEVRT 106 (134)
T ss_dssp HTTCCEEE
T ss_pred hcCceEEE
Confidence 99998743
No 15
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=77.31 E-value=50 Score=31.96 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=98.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCC-----cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHH
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-----EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 314 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmG-----EPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i 314 (476)
..++.++.++.+....+ .+++.|-+.+ + +|.+. |. .+.++.+.+..+.. +.+.+- ..+.+
T Consensus 22 ~~~~~e~k~~i~~~L~~------~Gv~~IE~g~-~~~~~~~p~~~-d~-~~~~~~~~~~~~~~-----~~~l~~-~~~~i 86 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSE------AGLSVIETTS-FVSPKWVPQMG-DH-TEVLKGIQKFPGIN-----YPVLTP-NLKGF 86 (298)
T ss_dssp SCCCHHHHHHHHHHHHH------TTCSEECCEE-CCCTTTCGGGT-TH-HHHHHHSCCCTTCB-----CCEECC-SHHHH
T ss_pred CCCCHHHHHHHHHHHHH------cCcCEEEECC-CcCcccccccC-CH-HHHHHHHhhCCCCE-----EEEEcC-CHHhH
Confidence 45888888866665433 2676665543 4 67764 32 33444443322332 333221 24567
Q ss_pred HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEe---C--CCCCCHHHHHHHH
Q 011838 315 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML---A--GVNDSFDDAKRLI 389 (476)
Q Consensus 315 ~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI---~--GvNDs~ed~~~La 389 (476)
++.++.+-..+.|.+.+.+...+..+. ......++.+.+.++. .++.|.++.+..... + +. .+++.+.+++
T Consensus 87 ~~a~~ag~~~v~i~~~~sd~~~~~~~~-~~~~e~l~~~~~~i~~--a~~~G~~v~~~l~~~~~~~~~~~-~~~~~~~~~~ 162 (298)
T 2cw6_A 87 EAAVAAGAKEVVIFGAASELFTKKNIN-CSIEESFQRFDAILKA--AQSANISVRGYVSCALGCPYEGK-ISPAKVAEVT 162 (298)
T ss_dssp HHHHHTTCSEEEEEEESCHHHHHHHHS-CCHHHHHHHHHHHHHH--HHHTTCEEEEEEETTTCBTTTBS-CCHHHHHHHH
T ss_pred HHHHHCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHH--HHHCCCeEEEEEEEEeeCCcCCC-CCHHHHHHHH
Confidence 778877733556766555433333332 2333456667777774 567888877654322 1 11 3578899999
Q ss_pred HHHhcCCCe-EEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC--C--CeEEEccCCCC
Q 011838 390 GLVQGIPCK-INLISFNPHCGSQFTPTTDEKMIEFRNILAGA--G--CTVFLRLSRGD 442 (476)
Q Consensus 390 ~ll~~l~~~-VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~--G--i~v~vR~~~G~ 442 (476)
+.+.+.++. |+|- .+.|. .+++++.++.+.+++. + +.+..-+..|.
T Consensus 163 ~~~~~~Ga~~i~l~---DT~G~----~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gl 213 (298)
T 2cw6_A 163 KKFYSMGCYEISLG---DTIGV----GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQ 213 (298)
T ss_dssp HHHHHTTCSEEEEE---ETTSC----CCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSC
T ss_pred HHHHHcCCCEEEec---CCCCC----cCHHHHHHHHHHHHHhCCCCeEEEEECCCCch
Confidence 999888863 4432 22222 3466666666666542 2 33455566664
No 16
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=50.30 E-value=30 Score=35.87 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHHHHHh-c----CCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLKQFLN-E----SNCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~~L~~-~----~~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
+++.++|+.+.+... ++-|.|.|..+. +.+.+-+. + .++-+ |.++++.=. + +....
T Consensus 78 ~~L~~~I~~~~~~~~----P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pV-i~v~tpgf~------g-s~~~G 145 (458)
T 3pdi_B 78 ENVVEALKTICERQN----PSVIGLLTTGLSETQGCDLHTALHEFRTQYEEYKDVPI-VPVNTPDFS------G-CFESG 145 (458)
T ss_dssp HHHHHHHHHHHHHTC----CSEEEEEECHHHHTTCTTHHHHHHHTTTSCCSCSCSCE-EEECCCTTS------S-CHHHH
T ss_pred HHHHHHHHHHHHhcC----CCEEEEECCcHHHHhcCCHHHHHHHHHHhccccCCCeE-EEeeCCCcC------C-chhHH
Confidence 678888877665543 456788777642 33333332 2 12332 555554311 1 00112
Q ss_pred HHHHHHHHHHHHHhh-----CCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 349 LGLLIETLREELHFK-----NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 349 le~vleal~~~l~~~-----~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.+..++++-+++... ...+-.+ .+|+|.+-.+.|+.+|.++++.++..++.+|
T Consensus 146 ~~~a~~al~~~l~~~~~~~~~~~~~~V--Nii~G~~~~~~D~~eik~lL~~~Gi~v~~~~ 203 (458)
T 3pdi_B 146 FAAAVKAIVETLVPERRDQVGKRPRQV--NVLCSANLTPGDLEYIAESIESFGLRPLLIP 203 (458)
T ss_dssp HHHHHHHHHHHSSCSSSCTTCCCSSEE--EEEECTTCCHHHHHHHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHhhccccCcCCCCCCeE--EEEeCCCCChHHHHHHHHHHHHcCCEEEEec
Confidence 455666665533221 1111223 3567875568999999999999999998875
No 17
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=50.06 E-value=65 Score=29.54 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 381 SFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 381 s~ed~~~La~ll~~l~~~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+++++.+|++.--.+ ..||+-.....++. ..-.-++++++.|++....+|+++++|....+
T Consensus 106 ~p~d~~~lve~Gv~i-~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d 170 (187)
T 3lfj_A 106 NIDTCKRVMDGGLPI-TTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQMIPDS 170 (187)
T ss_dssp SHHHHHHHHHTTCCC-SEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHHHCCEEEECSSTTS
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCCCCCCCEEEeccEeeCHHHHHHHHHHHhccCCEEEEEECCCC
Confidence 688898887633222 26887775544443 22345689999998887666999999987654
No 18
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=49.23 E-value=1.8e+02 Score=27.71 Aligned_cols=166 Identities=8% Similarity=0.044 Sum_probs=89.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEec--CCc--ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHH
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGE--PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 315 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G--mGE--PLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~ 315 (476)
..++.++.++.+..+.+ .++..|-+.+ .++ |.+. + ..++++.+.+..+. ++.+.+ ...+.++
T Consensus 21 ~~~~~e~k~~i~~~L~~------~Gv~~IE~g~~~~~~~~p~~~-~-~~e~~~~i~~~~~~-----~v~~l~-~n~~~i~ 86 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD------CGYARIEATSFVSPKWVPQLA-D-SREVMAGIRRADGV-----RYSVLV-PNMKGYE 86 (295)
T ss_dssp SCCCHHHHHHHHHHHTT------TTCSEEEEEECSCTTTCGGGT-T-HHHHHHHSCCCSSS-----EEEEEC-SSHHHHH
T ss_pred CCcCHHHHHHHHHHHHH------cCcCEEEEccCcCcccccccc-C-HHHHHHHHHhCCCC-----EEEEEe-CCHHHHH
Confidence 35888888777765422 2555555433 244 5444 2 34566655432233 354433 2256777
Q ss_pred HHHhcCCeEEEEeeCCCCHHHHhhH-cCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCC----CCCCHHHHHHHHH
Q 011838 316 QFLNESNCALAVSLNATTDEVRNWI-MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG----VNDSFDDAKRLIG 390 (476)
Q Consensus 316 ~L~~~~~~~LaISLda~~de~r~~I-~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~G----vNDs~ed~~~La~ 390 (476)
+.++.+-..+.|++.+. + .+.+. ........++.+.+.++. .++.|..|..+....-| .-.+++.+.++++
T Consensus 87 ~a~~~G~~~V~i~~~~S-~-~h~~~~~~~~~~e~~~~~~~~v~~--a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~ 162 (295)
T 1ydn_A 87 AAAAAHADEIAVFISAS-E-GFSKANINCTIAESIERLSPVIGA--AINDGLAIRGYVSCVVECPYDGPVTPQAVASVTE 162 (295)
T ss_dssp HHHHTTCSEEEEEEESC-H-HHHHHHTSSCHHHHHHHHHHHHHH--HHHTTCEEEEEEECSSEETTTEECCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEecC-H-HHHHHHcCCCHHHHHHHHHHHHHH--HHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHH
Confidence 88877733456766554 3 23222 112222234555555663 56788887754433311 1235888999998
Q ss_pred HHhcCCC-eEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011838 391 LVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 430 (476)
Q Consensus 391 ll~~l~~-~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~ 430 (476)
.+.+.++ .+++- +. .|. .+++++.++.+.+++.
T Consensus 163 ~~~~~G~d~i~l~--Dt-~G~----~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 163 QLFSLGCHEVSLG--DT-IGR----GTPDTVAAMLDAVLAI 196 (295)
T ss_dssp HHHHHTCSEEEEE--ET-TSC----CCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEec--CC-CCC----cCHHHHHHHHHHHHHh
Confidence 8888876 44443 22 222 3466666666666653
No 19
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=47.68 E-value=30 Score=36.55 Aligned_cols=109 Identities=10% Similarity=0.098 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHH-HHHhc--C--CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNE--S--NCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~-~L~~~--~--~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
+++.++|+.+.+... ++-|.|.|..+. +.+. ++-++ . ++-+ |.++++.=.- ... ..
T Consensus 127 ~kL~~aI~~~~~~~~----P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~~~p~g~pV-i~v~tpgf~g-s~~------~G 194 (519)
T 1qgu_B 127 NNMNLGLQNASALYK----PEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAV-PHAHTPSFIG-SHV------TG 194 (519)
T ss_dssp HHHHHHHHHHHHHHC----CSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCTTSBC-CBCCCCTTSS-CHH------HH
T ss_pred HHHHHHHHHHHHhhC----CCEEEEeCCCcHHHhCCCHHHHHHHHHHhcCCCCCCcE-EEeeCCCcCC-Chh------HH
Confidence 567777776655442 345777777642 3333 33333 1 2332 4555443110 011 12
Q ss_pred HHHHHHHHHHHHHhh-CC---CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 349 LGLLIETLREELHFK-NN---YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 349 le~vleal~~~l~~~-~g---~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.+..++++-+++... .. .+-.+ .+|++.|..+.|+.+|.++++.++..++++|
T Consensus 195 ~~~a~~al~~~l~~~~~~~~~~~~~V--NIlg~~~~~~gD~~eik~lL~~~Gi~v~~lp 251 (519)
T 1qgu_B 195 WDNMFEGFAKTFTADYQGQPGKLPKL--NLVTGFETYLGNFRVLKRMMEQMAVPCSLLS 251 (519)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSEEEE--EEECCSCCCHHHHHHHHHHHHHHTCCEEESS
T ss_pred HHHHHHHHHHHhhccccccCCCCCcE--EEECCCCCCcccHHHHHHHHHHcCCeEEEec
Confidence 456666665544332 11 23333 4678876438899999999999999998776
No 20
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=42.67 E-value=1.8e+02 Score=25.81 Aligned_cols=83 Identities=14% Similarity=0.274 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC----CCCCCcHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 422 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~----~~~~ps~e~i~~ 422 (476)
++++.++.+.. ....+.++.+ +.+ +++++.+|++ .+.+. .||+-.....+|. ..-.-++++++.
T Consensus 64 sve~ai~~~~~--~~~~~~~v~l---l~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 132 (165)
T 1vsq_C 64 DVAKMIRVYNN--PKYAGERVML---LFT----NPTDVERLVE--GGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEA 132 (165)
T ss_dssp CHHHHHHHHTC--GGGTTCEEEE---EES----SHHHHHHHHH--TTCCCSEEEEEECCCCTTSEECSSSCEECHHHHHH
T ss_pred EHHHHHHHHhc--cccCCcEEEE---EEC----CHHHHHHHHH--cCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHH
Confidence 45666655543 1223344432 333 6888888865 34443 6888765443333 223346889998
Q ss_pred HHHHHHhCCCeEEEccCCCC
Q 011838 423 FRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 423 f~~~L~~~Gi~v~vR~~~G~ 442 (476)
|++.. +.|+++++|....+
T Consensus 133 lk~L~-~~Gv~v~~q~vP~d 151 (165)
T 1vsq_C 133 FKKLN-ARGIELEVRKVSTD 151 (165)
T ss_dssp HHHHH-HTTCEEEECSSTTS
T ss_pred HHHHH-HCCCEEEEEECCCC
Confidence 87666 45999999987654
No 21
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=41.56 E-value=1.1e+02 Score=27.20 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEccCCCCc
Q 011838 381 SFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 443 (476)
Q Consensus 381 s~ed~~~La~ll~~l~~~VnLIp~nP~~~~----~~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~d 443 (476)
+++++.+|++.--.+ ..||+-.....+|. ..-.-++++++.|++...+.|+++++|....+.
T Consensus 87 ~p~d~~~lv~~g~~i-~~vNvG~m~~~~g~~~i~~~v~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d~ 152 (163)
T 3p3v_A 87 DLQDAKLLVEGGVPI-TEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAGN 152 (163)
T ss_dssp SHHHHHHHHHTTCCC-CEEEEEEBCCCTTSEESSSSBEECHHHHHHHHHHHHTSCCEEECCCSSSCC
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHhcCCEEEEEECcCCC
Confidence 688888887632222 26887775544443 223356899999887765489999999876543
No 22
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=39.02 E-value=1.8e+02 Score=25.88 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC----CCCCCcHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 422 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~----~~~~ps~e~i~~ 422 (476)
++++.++.+.. ....+.++. ++.+ +++++.+|++ .+.+. .||+-.....+|. ..-.-++++++.
T Consensus 61 sve~ai~~~~~--~~~~~~~v~---ll~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 129 (164)
T 1nrz_A 61 SLEKAVAVYHN--PQYQDETVF---YLFT----NPHDVLTMVR--QGVQIATLNIGGMAWRPGKKQLTKAVSLDPQDIQA 129 (164)
T ss_dssp CHHHHHHHHTC--GGGTTCEEE---EEES----SHHHHHHHHT--TTCCCSEEEEEEBCCCTTCEEEETTEEECHHHHHH
T ss_pred EHHHHHHHHhc--ccCCCceEE---EEEC----CHHHHHHHHH--cCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHH
Confidence 45666655543 122344443 3444 6888887754 34443 6888776544443 223346888998
Q ss_pred HHHHHHhCCCeEEEccCCCC
Q 011838 423 FRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 423 f~~~L~~~Gi~v~vR~~~G~ 442 (476)
|++.. +.|+++++|....+
T Consensus 130 lk~L~-~~Gv~v~~q~vP~d 148 (164)
T 1nrz_A 130 FRELD-KLGVKLDLRVVASD 148 (164)
T ss_dssp HHHHH-HTTCEEEECSSTTS
T ss_pred HHHHH-HCCCEEEEEECcCC
Confidence 87665 45999999987654
No 23
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=37.62 E-value=3.2e+02 Score=27.27 Aligned_cols=175 Identities=12% Similarity=0.057 Sum_probs=89.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHh
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 319 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~ 319 (476)
..++.++.++.+....+ .|++.|-+ |-|-.++ ...++++.+. ..+++ ..+....-+..+.+++.++
T Consensus 20 ~~~~~~~k~~ia~~L~~------~Gv~~IE~---g~p~~~~-~~~~~~~~i~-~~~~~---~~v~~~~r~~~~di~~a~~ 85 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDE------FGIEYIEV---TTPVASP-QSRKDAEVLA-SLGLK---AKVVTHIQCRLDAAKVAVE 85 (382)
T ss_dssp CCCCHHHHHHHHHHHHH------HTCSEEEE---CCTTSCH-HHHHHHHHHH-TSCCS---SEEEEEEESCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH------cCcCEEEE---cCCcCCH-HHHHHHHHHH-hcCCC---cEEEEEcccChhhHHHHHH
Confidence 46888887777665433 26776655 3387775 3567777664 33543 2333333334556777777
Q ss_pred cCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCC--CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011838 320 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN--YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 397 (476)
Q Consensus 320 ~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g--~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 397 (476)
.+-..+.+.+.+ ++ .+.+-........++.+.+.++. .++.| ..+.+. +....--+++.+.++++.+.+. +
T Consensus 86 ~g~~~v~i~~~~-s~-~~~~~~~~s~~e~l~~~~~~v~~--ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~~~~-a 158 (382)
T 2ztj_A 86 TGVQGIDLLFGT-SK-YLRAPHGRDIPRIIEEAKEVIAY--IREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAVAPY-V 158 (382)
T ss_dssp TTCSEEEEEECC----------CCCHHHHHHHHHHHHHH--HHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHHGGG-C
T ss_pred cCCCEEEEEecc-CH-HHHHHhCCCHHHHHHHHHHHHHH--HHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHHHHh-c
Confidence 763234454433 33 22221122212224445556653 45667 555444 3344444578888888888777 5
Q ss_pred e-EEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC---CCe--EEEccCCCC
Q 011838 398 K-INLISFNPHCGSQFTPTTDEKMIEFRNILAGA---GCT--VFLRLSRGD 442 (476)
Q Consensus 398 ~-VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~---Gi~--v~vR~~~G~ 442 (476)
. |+| + .+.|. ..++++.++.+.+++. ++. +..-+..|.
T Consensus 159 ~~i~l-~--DT~G~----~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~Gl 202 (382)
T 2ztj_A 159 DRVGL-A--DTVGV----ATPRQVYALVREVRRVVGPRVDIEFHGHNDTGC 202 (382)
T ss_dssp SEEEE-E--ETTSC----CCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSC
T ss_pred CEEEe-c--CCCCC----CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccH
Confidence 3 333 2 22222 2345555555555543 343 444555553
No 24
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=37.51 E-value=1.7e+02 Score=25.97 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeccCCCCC----CCCCCcHHHHHH
Q 011838 348 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 422 (476)
Q Consensus 348 ~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLIp~nP~~~~----~~~~ps~e~i~~ 422 (476)
++++.++.+.. ....+.++. ++.+ +++++.+|++ .+.+. .||+-.....+|. ..-.-++++++.
T Consensus 62 sve~ai~~~~~--~~~~~~~v~---ll~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 130 (163)
T 1ble_A 62 SVSKMAKAFHS--PRYEGVTAM---LLFE----NPSDIVSLIE--AGVPIKTVNVGGMRFENHRRQITKSVSVTEQDIKA 130 (163)
T ss_dssp CHHHHHHHHHC--STTTTCEEE---EEES----SSHHHHHHHT--TTCCCCEEEEEEBCCCTTSEECSSSBEECHHHHHH
T ss_pred EHHHHHHHHhc--ccCCCceEE---EEEC----CHHHHHHHHH--cCCCCCEEEECCCCCCCCCeEEeccEeeCHHHHHH
Confidence 45666665553 122334443 2344 5778877753 34443 6888775444443 223356889998
Q ss_pred HHHHHHhCCCeEEEccCCCC
Q 011838 423 FRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 423 f~~~L~~~Gi~v~vR~~~G~ 442 (476)
|++.. +.|+++++|....+
T Consensus 131 l~~L~-~~Gv~v~~q~vP~d 149 (163)
T 1ble_A 131 FETLS-DKGVKLELRQLPSD 149 (163)
T ss_dssp HHHHH-HTTCEEEECSSTTS
T ss_pred HHHHH-HCCCEEEEEECCCC
Confidence 87665 45999999987654
No 25
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=34.19 E-value=1e+02 Score=31.61 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-------HHHH-HHHhcC----CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011838 281 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNES----NCALAVSLNATTDEVRNWIMPINRKYK 348 (476)
Q Consensus 281 d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-------p~i~-~L~~~~----~~~LaISLda~~de~r~~I~p~~~~~~ 348 (476)
+++.++|+.+.+... ++-|.|.|..+. +.+. ++-++. ++-+ |.++++.=. + +....
T Consensus 82 ~~L~~aI~~~~~~~~----P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pv-i~v~tpgf~------g-s~~~G 149 (458)
T 1mio_B 82 SNIKTAVKNIFSLYN----PDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLV-IHTNTPSYV------G-SHVTG 149 (458)
T ss_dssp HHHHHHHHHHHHHTC----CSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEE-EEECCCTTS------S-CHHHH
T ss_pred HHHHHHHHHHHHhcC----CCEEEEECCcHHHHHhcCHHHHHHHHHHhcCCCCCCeE-EEEECCCCc------c-cHHHH
Confidence 677787776665542 345777777642 3333 333332 3443 666665311 1 11112
Q ss_pred HHHHHHHHHHHHHhhC-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011838 349 LGLLIETLREELHFKN-NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 403 (476)
Q Consensus 349 le~vleal~~~l~~~~-g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp 403 (476)
.+...+++-+++.... ..+-. +.+++|.|. +.|+.+|.++++.++..++.+|
T Consensus 150 ~~~a~~al~~~l~~~~~~~~~~--VNilg~~~~-~~d~~eik~lL~~~Gi~v~~l~ 202 (458)
T 1mio_B 150 FANMVQGIVNYLSENTGAKNGK--INVIPGFVG-PADMREIKRLFEAMDIPYIMFP 202 (458)
T ss_dssp HHHHHHHHHHHHCCCCSCCCSC--EEEECCSCC-HHHHHHHHHHHHHHTCCEEESS
T ss_pred HHHHHHHHHHHHccccCCCCCc--EEEECCCCC-HHHHHHHHHHHHHcCCcEEEec
Confidence 4556666655333211 11112 235788764 8899999999999999998865
No 26
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=33.23 E-value=3.6e+02 Score=26.44 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEec--CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCch-----HH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-----PQ 313 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G--mGEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~-----p~ 313 (476)
.+|++||+++.....+. +..+-++..=. -|.|.+.++...++++.+.+.... -|.++|-|.. .+
T Consensus 28 PvTpeEia~~A~~~~~A----GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-----iI~~TTgg~~~~~~eer 98 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEA----GAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA-----ILNITTGGGLGMSLDER 98 (311)
T ss_dssp CCSHHHHHHHHHHHHHH----TCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC-----EEEECSSCSTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-----EEEECCCCCCCCCHHHH
Confidence 48999999999887542 33455555544 388999987777777766554443 3777777642 23
Q ss_pred HHHHHhcCCeEEEEeeCCCCH-----------------HH-----HhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEE
Q 011838 314 LKQFLNESNCALAVSLNATTD-----------------EV-----RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 371 (476)
Q Consensus 314 i~~L~~~~~~~LaISLda~~d-----------------e~-----r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ie 371 (476)
+.-+....+...+++.-+.|- .. ++.+. ..+.+.+.+.++. ..+.|.+..++
T Consensus 99 la~~~~~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~----~n~~~~i~~~~~~--~~e~Gi~pE~e 172 (311)
T 3e02_A 99 LAPARAARPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFIL----SNTFSQIERGMTE--LGASGTRFEFE 172 (311)
T ss_dssp HHHHHHHCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEE----CCCHHHHHHHHHH--HHTTTCEEEEE
T ss_pred HHHHHhcCCCeeeecCCCceeccccchhhccccccccchhhcccCCCcee----cCCHHHHHHHHHH--HHHcCCeEEEE
Confidence 333323222222344322210 00 01111 1235566666664 35677776666
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc-C---CCeEEEEeccCCCCCCCCCCcHHHHHHHHH
Q 011838 372 YVMLAGVNDSFDDAKRLIGLVQG-I---PCKINLISFNPHCGSQFTPTTDEKMIEFRN 425 (476)
Q Consensus 372 yvLI~GvNDs~ed~~~La~ll~~-l---~~~VnLIp~nP~~~~~~~~ps~e~i~~f~~ 425 (476)
. . +..++..+..+++. + +..+++.- - ..+ -.+++++.+..+.+
T Consensus 173 ~--f-----d~g~l~~~~~l~~~Gl~~~p~~~~~vl-G-v~~--g~~~~~~~L~~~~~ 219 (311)
T 3e02_A 173 C--Y-----DVGHLYNLAHFVDRKLVEPPFFLQCVF-G-ILG--GIGADPENLLHMRT 219 (311)
T ss_dssp E--C-----SHHHHHHHHHHHHTTSSCSCEEEEEEE-C-CBT--SCCSCHHHHHHHHH
T ss_pred E--E-----cHHHHHHHHHHHHcCCCCCCeEEEEEe-c-CCC--CCCCCHHHHHHHHH
Confidence 3 1 36777777777763 2 22444432 1 111 13566777777773
No 27
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=33.13 E-value=2.3e+02 Score=27.41 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=38.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEecCCccc---C-------CHHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL---H-------NVENVIKAANIMVHEQGLHFSPRKVTVSTSG 309 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~GmGEPL---L-------n~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG 309 (476)
+..+.+++++++.+..+. |.+-|-+ | ||.+ . ..+.+...++.+.+..++. |+|+|..
T Consensus 33 ~~~~~~~a~~~a~~~v~~------GAdiIDI-G-gestrPga~~v~~~eE~~rv~pvi~~l~~~~~~p-----iSIDT~~ 99 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINA------GATIIDV-G-GESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVW-----ISVDTSK 99 (282)
T ss_dssp CCTHHHHHHHHHHHHHHH------TCSEEEE-E-SSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCE-----EEEECCC
T ss_pred ccCCHHHHHHHHHHHHHC------CCCEEEE-C-CCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCe-----EEEeCCC
Confidence 456788888888765442 4443333 5 5543 1 1345666777665555654 8999853
Q ss_pred chHHHHHHHhcC
Q 011838 310 LVPQLKQFLNES 321 (476)
Q Consensus 310 ~~p~i~~L~~~~ 321 (476)
.+-+++-++.+
T Consensus 100 -~~va~aAl~aG 110 (282)
T 1aj0_A 100 -PEVIRESAKVG 110 (282)
T ss_dssp -HHHHHHHHHTT
T ss_pred -HHHHHHHHHcC
Confidence 22344445555
No 28
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=32.73 E-value=3.1e+02 Score=25.85 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=72.8
Q ss_pred eEEEEEecCCc--ccCCH-HHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHc
Q 011838 265 ITNVVFMGMGE--PLHNV-ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 341 (476)
Q Consensus 265 i~nIvf~GmGE--PLLn~-d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~~~~~~~LaISLda~~de~r~~I~ 341 (476)
.-++=+|- |- |-+.+ ..+++.++......-+ -+.+-++-....++.+++.+...+.+...+.+
T Consensus 56 ~lHvDVmD-g~FVpnit~G~~~v~~lr~~~p~~~l-----dvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~-------- 121 (246)
T 3inp_A 56 NIHFDVMD-NHYVPNLTFGPMVLKALRDYGITAGM-----DVHLMVKPVDALIESFAKAGATSIVFHPEASE-------- 121 (246)
T ss_dssp CEEEEEEB-SSSSSCBCCCHHHHHHHHHHTCCSCE-----EEEEECSSCHHHHHHHHHHTCSEEEECGGGCS--------
T ss_pred EEEEEecC-CCcCcchhcCHHHHHHHHHhCCCCeE-----EEEEeeCCHHHHHHHHHHcCCCEEEEccccch--------
Confidence 34566775 54 32322 2456666643211222 24444443334567777777444334333321
Q ss_pred CCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCCCCCcHHHH
Q 011838 342 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG-SQFTPTTDEKM 420 (476)
Q Consensus 342 p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLIp~nP~~~-~~~~~ps~e~i 420 (476)
.+.+.++.+ ++.|.++.+. +-|+. ..+.++ .++... ..|-++..||..+ ..|.+.+.+.+
T Consensus 122 ------~~~~~i~~i-----r~~G~k~Gva--lnp~T--p~e~l~---~~l~~v-D~VlvMsV~PGfgGQ~fi~~~l~KI 182 (246)
T 3inp_A 122 ------HIDRSLQLI-----KSFGIQAGLA--LNPAT--GIDCLK---YVESNI-DRVLIMSVNPGFGGQKFIPAMLDKA 182 (246)
T ss_dssp ------CHHHHHHHH-----HTTTSEEEEE--ECTTC--CSGGGT---TTGGGC-SEEEEECSCTTC--CCCCTTHHHHH
T ss_pred ------hHHHHHHHH-----HHcCCeEEEE--ecCCC--CHHHHH---HHHhcC-CEEEEeeecCCCCCcccchHHHHHH
Confidence 133444444 4457776653 44542 223333 334433 2677788888753 45777778999
Q ss_pred HHHHHHHHhCCCeE
Q 011838 421 IEFRNILAGAGCTV 434 (476)
Q Consensus 421 ~~f~~~L~~~Gi~v 434 (476)
+++++.+.++|..+
T Consensus 183 ~~lr~~~~~~~~~~ 196 (246)
T 3inp_A 183 KEISKWISSTDRDI 196 (246)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHhcCCCe
Confidence 99999888766543
No 29
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=31.10 E-value=1.5e+02 Score=26.45 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeccCCCCCC----CCCCcHHHHHHHHHHHHhCCCeEEEccCCCC
Q 011838 381 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQ----FTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 442 (476)
Q Consensus 381 s~ed~~~La~ll~~l~~~VnLIp~nP~~~~~----~~~ps~e~i~~f~~~L~~~Gi~v~vR~~~G~ 442 (476)
+++++.+|++.--.+ ..||+-.....+|.. .-.-++++++.|++.. +.|+++++|....+
T Consensus 90 ~p~d~~~lve~Gv~i-~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~-~~Gv~v~~q~vP~d 153 (168)
T 3eye_A 90 TPQTVRKLVEGGIDL-KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIK-QRGVNVFIQDVPGD 153 (168)
T ss_dssp SHHHHHHHHHTTCCC-CEEEECCBCCCTTCEEEETTEEECHHHHHHHHHHH-HTTCEEEECSSTTS
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHH-HCCCEEEEEECcCC
Confidence 688888887632222 267876654444431 2234689999887765 56999999986654
No 30
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=30.78 E-value=38 Score=28.74 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeE-EEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 011838 365 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 435 (476)
Q Consensus 365 g~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~V-nLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~Gi~v~ 435 (476)
|..+...-++.-++.|.+.-+.++.+.|.+.+..| +++.+. ......-.-..++.+++.+.|.+.|+.|.
T Consensus 66 G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 66 HFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp TCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHTTCEEE
T ss_pred CCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHcCCEEe
Confidence 44443322333356678889999999998887766 555552 11111000112467788999999999884
No 31
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=26.17 E-value=4.5e+02 Score=25.37 Aligned_cols=123 Identities=11% Similarity=0.006 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-CCc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCchHHHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-MGE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 318 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-mGE-PLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~~p~i~~L~ 318 (476)
.++.+.+...+....+ .+++.|+..| .|| |++..++-.+.++...+..+= ...|.+-|...+....+++
T Consensus 29 ~iD~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g---rvpViaGvg~~t~~ai~la 99 (316)
T 3e96_A 29 SIDWHHYKETVDRIVD------NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG---RALVVAGIGYATSTAIELG 99 (316)
T ss_dssp CBCHHHHHHHHHHHHT------TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH------cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC---CCcEEEEeCcCHHHHHHHH
Confidence 4666666665554432 4788888887 478 788877666666655443221 1235555533333333332
Q ss_pred ----hcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHH
Q 011838 319 ----NES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 389 (476)
Q Consensus 319 ----~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La 389 (476)
+.+ +..+ +-.| .-.+.+-+.+.+-.+. +....+.++.+--. |++-+++.+.+|+
T Consensus 100 ~~A~~~Gadavl---v~~P----------~y~~~s~~~l~~~f~~-va~a~~lPiilYn~---g~~l~~~~~~~La 158 (316)
T 3e96_A 100 NAAKAAGADAVM---IHMP----------IHPYVTAGGVYAYFRD-IIEALDFPSLVYFK---DPEISDRVLVDLA 158 (316)
T ss_dssp HHHHHHTCSEEE---ECCC----------CCSCCCHHHHHHHHHH-HHHHHTSCEEEEEC---CTTSCTHHHHHHT
T ss_pred HHHHhcCCCEEE---EcCC----------CCCCCCHHHHHHHHHH-HHHhCCCCEEEEeC---CCCCCHHHHHHHH
Confidence 334 4332 2122 1112245566666665 45555666655322 6666666555554
No 32
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=23.85 E-value=5.2e+02 Score=25.33 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-CCc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc-hHHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-MGE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-VPQLKQF 317 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-mGE-PLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~-~p~i~~L 317 (476)
.++.+.+.+.+....+ .+++.|+..| .|| |+|..++-.+.++...+..+=+ ..|.+-|.+. +.+..++
T Consensus 48 ~ID~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~gr---vpViaGvg~~st~eai~l 118 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIK------AGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRR---VPVLIGTGGTNARETIEL 118 (343)
T ss_dssp SBCHHHHHHHHHHHHH------TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTS---SCEEEECCSSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH------cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCC---CcEEEecCCCCHHHHHHH
Confidence 4676666666655433 4788888888 488 7888777677777554432211 2355555443 2322222
Q ss_pred ---H-hcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhCCCeEEEEE-EEeCCCCCCHHHHHHHH
Q 011838 318 ---L-NES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY-VMLAGVNDSFDDAKRLI 389 (476)
Q Consensus 318 ---~-~~~-~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~~g~~V~iey-vLI~GvNDs~ed~~~La 389 (476)
+ +.+ +..+.+ .| .-.+.+-+.+.+-.+. +....+.+|.+-- .-.-|++-+++.+.+|+
T Consensus 119 a~~A~~~Gadavlv~---~P----------~Y~~~s~~~l~~~f~~-VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 119 SQHAQQAGADGIVVI---NP----------YYWKVSEANLIRYFEQ-VADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHHHHHTCSEEEEE---CC----------SSSCCCHHHHHHHHHH-HHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEEEC---CC----------CCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 2 334 433322 22 1111234566666665 4555666655421 11126777777777776
No 33
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=22.93 E-value=51 Score=24.94 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=39.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhc---CCCHHHHHHHHHH
Q 011838 108 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEH 171 (476)
Q Consensus 108 ~~~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~---~l~~~~r~~L~~~ 171 (476)
....++++...+.++|.++ -|..+-+|+.|.+|. . ..+.+++. .+++..-+++.+.
T Consensus 14 ~~~~~idiN~a~~~~L~~i---pGIG~~~A~~Il~~r--~---~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 14 QAQTPVSLNEASLEELMAL---PGIGPVLARRIVEGR--P---YARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp GGGCSEETTTCCHHHHTTS---TTCCHHHHHHHHHTC--C---CSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred cccCccChhhCCHHHHHhC---CCCCHHHHHHHHHHc--c---cCCHHHHHhCCCCCHHHHHHHHHh
Confidence 3346778888888887764 477788999999975 2 35667664 4677766666543
No 34
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=22.08 E-value=53 Score=27.55 Aligned_cols=78 Identities=8% Similarity=0.056 Sum_probs=45.0
Q ss_pred eEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCC---eEEEccCCCC------cccccccccccc---CC-CCCCCCC-
Q 011838 398 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC---TVFLRLSRGD------DQMAACGQLGNP---GA-IQAPLLR- 463 (476)
Q Consensus 398 ~VnLIp~nP~~~~~~~~ps~e~i~~f~~~L~~~Gi---~v~vR~~~G~------di~aaCGqL~~~---~~-~~~~~~~- 463 (476)
.|.-+|.+.+....-+.-+++.++++.+.+++.|+ +++||...|. ++.++|+.|..- +. .=++.++
T Consensus 13 ~v~~IPi~~I~~p~~~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A~k~Lg~~tIpA~V~~ 92 (110)
T 1xw3_A 13 AVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQ 92 (110)
T ss_dssp EEEEEEGGGEECCSCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEEEE
T ss_pred eEEEeCHHHccCCCCCccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHHHHHcCCCcCCEEEEc
Confidence 34445654333111235568899999999999995 5788764332 577788877433 11 2233333
Q ss_pred -ChhhHHHHhhhc
Q 011838 464 -VPEKFQTAINAS 475 (476)
Q Consensus 464 -~~~~~~~~~~~~ 475 (476)
..++-+.-|-+|
T Consensus 93 ~~~~~l~~ylg~s 105 (110)
T 1xw3_A 93 STLSDLRVYLGAS 105 (110)
T ss_dssp ECHHHHHHHHGGG
T ss_pred CCHHHHHHHhCcC
Confidence 355556555554
No 35
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=21.86 E-value=6e+02 Score=25.27 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=58.3
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCc-------h-HHHHHHHhcC-CeEEEEee--CCCCHHHHhhHc
Q 011838 274 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST-SGL-------V-PQLKQFLNES-NCALAVSL--NATTDEVRNWIM 341 (476)
Q Consensus 274 GEPLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsT-NG~-------~-p~i~~L~~~~-~~~LaISL--da~~de~r~~I~ 341 (476)
|+|- ...+.+..+.+.+..|+. ....++..+ .|- + +.+++|.+.+ .-.+.+.+ -+-.=|
T Consensus 209 GDpY--~~q~~~t~~lv~e~Lg~~-~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~P~gFvsD~lE------ 279 (359)
T 3hcn_A 209 GDPY--PQEVSATVQKVMERLEYC-NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIE------ 279 (359)
T ss_dssp TCSH--HHHHHHHHHHHHHHTTTC-SCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEECTTCCSCCCC------
T ss_pred CCCH--HHHHHHHHHHHHHHcCCC-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccchhhHH------
Confidence 7774 457888888787777764 123566666 462 1 3567777666 22222322 111111
Q ss_pred CCCCCCcHHHH-HHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011838 342 PINRKYKLGLL-IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 394 (476)
Q Consensus 342 p~~~~~~le~v-leal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 394 (476)
+++++ +++.+. +..+.|.. +|..+|-.||++..++.|++++..
T Consensus 280 ------TL~Eid~E~~~e-~a~e~G~~---~~~rip~LNd~p~fi~~La~lv~~ 323 (359)
T 3hcn_A 280 ------TLYELDIEYSQV-LAKECGVE---NIRRAESLNGNPLFSKALADLVHS 323 (359)
T ss_dssp ------CHHHHCHHHHHH-HHHHTCCC---EEEECCCSTTCHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHH-HHHhCCCc---eEEEcCCCCCCHHHHHHHHHHHHH
Confidence 23333 222233 23455542 356789999999999999988864
No 36
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=21.53 E-value=1.4e+02 Score=30.81 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHhhCCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc-CCCeEEEEeccCCCCCCC-CCCcHHHHHHHH
Q 011838 347 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG-IPCKINLISFNPHCGSQF-TPTTDEKMIEFR 424 (476)
Q Consensus 347 ~~le~vleal~~~l~~~~g~~V~ieyvLI~GvNDs~ed~~~La~ll~~-l~~~VnLIp~nP~~~~~~-~~ps~e~i~~f~ 424 (476)
..+++.++-++.| .. .-.-|++| ++. .+.++++++++-++. .+ +|++.||..+...| ...++++++.|.
T Consensus 268 ~gld~AI~Ra~AY-~~-GAD~if~E----~~~-~~~~ei~~f~~~v~~~~P--~~~La~~~sPsfnw~~~~~d~~~~~f~ 338 (435)
T 3lg3_A 268 AGIEQAISRGLAY-AP-YADLVWCE----TST-PDLALAKRFADAVHAQFP--GKLLAYNCSPSFNWKKNLTDQQIASFQ 338 (435)
T ss_dssp CSHHHHHHHHHHH-GG-GCSEEEEC----CSS-CCHHHHHHHHHHHHHHST--TCEEEEECCSSSCHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHH-Hc-cCCEEEec----CCC-CCHHHHHHHHHHhccccC--CeEEEeCCCCCccccccCCHHHHHHHH
Confidence 4588888888874 43 22334433 332 357889988888764 44 45566776553322 235689999999
Q ss_pred HHHHhCCCeEEE
Q 011838 425 NILAGAGCTVFL 436 (476)
Q Consensus 425 ~~L~~~Gi~v~v 436 (476)
+.|.+.|+...+
T Consensus 339 ~eLa~lG~~~v~ 350 (435)
T 3lg3_A 339 DELSAMGYKYQF 350 (435)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHcCCcEEE
Confidence 999999987544
No 37
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=21.06 E-value=5.6e+02 Score=26.32 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeEEEEEe------cCCcccCC----HHHHHHHHHHHHHhcCCCCCCCeEEEEeCC
Q 011838 240 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFM------GMGEPLHN----VENVIKAANIMVHEQGLHFSPRKVTVSTSG 309 (476)
Q Consensus 240 r~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~------GmGEPLLn----~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG 309 (476)
+..+++|.++.+..+.++. ++-..|.+. | ||+... ++++.+..+ ..++.|+. +.+++|.
T Consensus 72 ~ar~~~E~~~D~~~~~~l~----~~~~~v~LH~~y~~~~-~~~v~~d~~~p~~f~~~~~-~a~e~GL~-----l~~n~n~ 140 (424)
T 3p14_A 72 KATTPEELRMDLEKALSLI----PGKHRVNLHAIYAETD-GKVVERDQLEPRHFEKWVR-WAKRHGLG-----LDFNPTL 140 (424)
T ss_dssp CCCSHHHHHHHHHHHHTTS----SSCCEEEEEGGGCCCT-TCCCCGGGCCGGGGHHHHH-HHHHHTCE-----EEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhc----CCCcceecchhhhccC-CCcCCccccChhhHHHHHH-HHHHcCCc-----eeeccCC
Confidence 4569999999998886654 334456666 4 565442 334444444 44678986 6688887
Q ss_pred ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh----CCCeEEEEEEEeCCCC----C
Q 011838 310 LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK----NNYKVLFEYVMLAGVN----D 380 (476)
Q Consensus 310 ~~-p~i~~L~~~~~~~LaISLda~~de~r~~I~p~~~~~~le~vleal~~~l~~~----~g~~V~ieyvLI~GvN----D 380 (476)
+. |.. .. .+++-++|+++|+.- ++.++++++. ... .|.+..+..-+-.|.+ |
T Consensus 141 Fshp~y----k~-----G~alTnPD~~VR~~A--------I~h~k~~idi--a~~~G~~LGs~~~~~lW~~DG~kdyp~D 201 (424)
T 3p14_A 141 FSHEKA----KD-----GLTLAHPDQAIRQFW--------IDHCIASRKI--GEYFGKELETPCLTNIWIPDGYKDTPSD 201 (424)
T ss_dssp SSSGGG----TT-----SCSTTCSSHHHHHHH--------HHHHHHHHHH--HHHHHHHHSSCEEEEECCCCEESSCCSC
T ss_pred CCChhh----cC-----CccCCCCCHHHHHHH--------HHHHHHHHHH--HHHHHHhcCCCeeEEEeCCCCCcCCCCC
Confidence 64 421 11 257889999998743 5667777763 444 4555333222325666 7
Q ss_pred CHHHHHHHHHHHhc
Q 011838 381 SFDDAKRLIGLVQG 394 (476)
Q Consensus 381 s~ed~~~La~ll~~ 394 (476)
-....+.+.+.+..
T Consensus 202 ~~~~~~rl~esL~e 215 (424)
T 3p14_A 202 RLTPRKRLKESLDQ 215 (424)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777754
No 38
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=20.78 E-value=1.2e+02 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=36.3
Q ss_pred HHHHH-HHHHHHhcCCC-eEEEEeccCCCCC-----CC-----C----CCcHHHHHHHHHHHHhCCCeEEE
Q 011838 382 FDDAK-RLIGLVQGIPC-KINLISFNPHCGS-----QF-----T----PTTDEKMIEFRNILAGAGCTVFL 436 (476)
Q Consensus 382 ~ed~~-~La~ll~~l~~-~VnLIp~nP~~~~-----~~-----~----~ps~e~i~~f~~~L~~~Gi~v~v 436 (476)
...+. ++.++|+++++ .|.|.|+.+.+.. .| . --+.++++++.+.+.++|+.|.+
T Consensus 13 ~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~Vil 83 (448)
T 1g94_A 13 WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYV 83 (448)
T ss_dssp HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44444 45567777775 6777776543211 12 1 12378999999999999999865
No 39
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=20.16 E-value=6.2e+02 Score=24.83 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeEEEEEec-CCc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCc-hHHHHHH
Q 011838 241 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-MGE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-VPQLKQF 317 (476)
Q Consensus 241 ~lt~~EIveqv~~~~~~l~~~~~~i~nIvf~G-mGE-PLLn~d~V~~ai~~l~~~~Gl~i~~r~ItVsTNG~-~p~i~~L 317 (476)
.++.+.+...+....+ .+++.|+..| .|| |+|..++-.++++. .-...+. |.+-+.+. +....++
T Consensus 43 ~ID~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~-~~~grvp-----ViaGvg~~st~eai~l 110 (344)
T 2hmc_A 43 TPDFDALVRKGKELIA------DGMSAVVYCGSMGDWPLLTDEQRMEGVER-LVKAGIP-----VIVGTGAVNTASAVAH 110 (344)
T ss_dssp SBCHHHHHHHHHHHHH------TTCCCEEESSGGGTGGGSCHHHHHHHHHH-HHHTTCC-----EEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH------cCCCEEEeCccCcChhhCCHHHHHHHHHH-HhCCCCc-----EEEecCCCCHHHHHHH
Confidence 4676666666655433 4788888887 478 78887776777775 2222232 55555543 2322222
Q ss_pred ---H-hcC-CeEEEEeeCCCCHHHHhhHcCCCCC-CcHHHHHHHHHHHHHh-hCCCeEEE-EEEEeCCCCCCHHHHHHH-
Q 011838 318 ---L-NES-NCALAVSLNATTDEVRNWIMPINRK-YKLGLLIETLREELHF-KNNYKVLF-EYVMLAGVNDSFDDAKRL- 388 (476)
Q Consensus 318 ---~-~~~-~~~LaISLda~~de~r~~I~p~~~~-~~le~vleal~~~l~~-~~g~~V~i-eyvLI~GvNDs~ed~~~L- 388 (476)
+ +.+ +..+ +-.|. -.+ .+-+.+.+-.+. +.. ..+.+|.+ ++. .-|++-+++.+.+|
T Consensus 111 a~~A~~~Gadavl---v~~P~----------y~~~~s~~~l~~~f~~-IA~aa~~lPiilYn~P-~tg~~l~~e~~~~L~ 175 (344)
T 2hmc_A 111 AVHAQKVGAKGLM---VIPRV----------LSRGSVIAAQKAHFKA-ILSAAPEIPAVIYNSP-YYGFATRADLFFALR 175 (344)
T ss_dssp HHHHHHHTCSEEE---ECCCC----------SSSTTCHHHHHHHHHH-HHHHSTTSCEEEEEBG-GGTBCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEE---ECCCc----------cCCCCCHHHHHHHHHH-HHhhCCCCcEEEEecC-ccCCCcCHHHHHHHH
Confidence 2 334 4332 22221 111 234667777776 455 56677654 333 34888888887777
Q ss_pred HH
Q 011838 389 IG 390 (476)
Q Consensus 389 a~ 390 (476)
++
T Consensus 176 a~ 177 (344)
T 2hmc_A 176 AE 177 (344)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 40
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.07 E-value=93 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCcccCCCCHHHHHHHHHHCCCCc
Q 011838 111 SRVLLKGMSFTELQQWVRSHAFRP 134 (476)
Q Consensus 111 ~~~~~~~l~~~el~~~~~~~g~~~ 134 (476)
...++..|+..||++++.+.|++.
T Consensus 6 s~~~~~klkV~eLK~eLk~RgL~~ 29 (50)
T 1zrj_A 6 SGMDVRRLKVNELREELQRRGLDT 29 (50)
T ss_dssp CCCCGGGSCHHHHHHHHHHTTCCC
T ss_pred CcCCHHHCcHHHHHHHHHHcCCCC
Confidence 456889999999999999999874
No 41
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=20.03 E-value=2e+02 Score=28.83 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCeE-EEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEE
Q 011838 376 AGVNDSFDDAKRLIGLVQGIPCKI-NLISFNPHCG-SQFTPTTDEKMIEFRNILAGAGCTVF 435 (476)
Q Consensus 376 ~GvNDs~ed~~~La~ll~~l~~~V-nLIp~nP~~~-~~~~~ps~e~i~~f~~~L~~~Gi~v~ 435 (476)
|+.+++.+.+.++++.++..+..+ .+..|.|... ..|+....+.++.+++..++.|+.+.
T Consensus 113 pcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~ 174 (350)
T 1vr6_A 113 PCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVV 174 (350)
T ss_dssp CSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 678999999999999999887643 3334555431 24666678999999999999999863
Done!