BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011839
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09778|TSC1_SCHPO Tuberous sclerosis 1 protein homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tsc1 PE=1 SV=1
Length = 899
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 35/235 (14%)
Query: 47 ASEPADI---QNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILE--ETVKHLRNER 101
ASEP I QN + H + + A L+ E + + E ++ ++ ER
Sbjct: 469 ASEPFSISWPQNPSISGSVHSATTFDKAQLSNTEDSYDNISHGTSYSEGVSSIHMVKGER 528
Query: 102 ESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQL 161
S N +L E + +T +TI++LQR + L +Q E E+ ++Q
Sbjct: 529 GS----------------NNLELTSESLSST-NDTIRRLQR-DLLFLQNELRFEKFVRQQ 570
Query: 162 RNQNDLHIQREGGLEMNIAN-----LQSEKEFWLQKEAALEQKISQLRDES-AALNMKRA 215
QN + RE L+M + + L + K + Q E L +I + R ES AALN +R
Sbjct: 571 HLQNIGKLHREHILDMAVESERQKLLLTNKRYKAQIEL-LNSEIDKHRSESQAALN-RRV 628
Query: 216 SLEE----RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 266
E ++K L +K +W ES K +I L + +R +++ S+N L
Sbjct: 629 KWENDFNNKIKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQL 683
>sp|Q9D952|EVPL_MOUSE Envoplakin OS=Mus musculus GN=Evpl PE=2 SV=3
Length = 2035
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 50/256 (19%)
Query: 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRM 148
I+EE VK ++K+ LE + + L+ E D K +V L Q LQ Q DL +
Sbjct: 1462 IMEEVVK---------LEKDPDLERSTEALRRELDQEKNRV-TELHRECQGLQVQVDL-L 1510
Query: 149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW--LQKEAALEQKISQLRDE 206
QK + E+TI + + ++++ LE A + W L +E A + R+E
Sbjct: 1511 QKTKSQEKTI----YKEVIRVEKDPVLEGERARV------WEILNRERAARKG----REE 1556
Query: 207 SAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNL 266
SL+ER+ EA + SW++ E+ + S D +L+ Q+ ELE+ +
Sbjct: 1557 DVR------SLQERIDRAEALRRSWSREEAELQRARDQASQDCGRLQRQLRELEQQKQ-- 1608
Query: 267 LQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 326
Q+ RQL+E L + S+ K Q + + TQ+EAA ++ E ++ EK
Sbjct: 1609 -QKARQLQEEGRLLSQKTESERQKAAQRSQA-----VTQLEAA------ILQEKDKIYEK 1656
Query: 327 ---VNDLSVKLDRQSV 339
+ DL K+ R+ +
Sbjct: 1657 ERTLRDLHTKVSREEL 1672
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 18/200 (9%)
Query: 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD---ESKKLQH 294
S+ + L +I L +V+EL +N L++EN +L V + +L D + K+++
Sbjct: 1143 SRSNLFQLKNEICSLTTEVMELNNKKNELIEENNKLNL-VDQGKKKLKKDVEKQKKEIEK 1201
Query: 295 ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTA 354
+ + QI+ ++KL ENIEL+ NDL+ K D + + D +
Sbjct: 1202 LNKQLTKCNKQIDELNEEVEKLNNENIELITYSNDLNNKFDMKENNLMMKLDENEDNIKK 1261
Query: 355 LTSDTEPM--------SESSDNMSSLNNRLETQGVVAVKEDRNGINGVHAD----PPPLV 402
+ S + M E N++ +NN + + +K N +N + D +
Sbjct: 1262 MKSKIDDMEKEIKYREDEKKRNLNEINNLKKKNEDMCIK--YNEMNIKYGDICVKYEEMS 1319
Query: 403 LSSSEAEYSGEIVQIPLDDK 422
L+ E E +++ D+K
Sbjct: 1320 LTYKETSLKYEQIKVKYDEK 1339
>sp|Q6VGS5|DAPLE_MOUSE Protein Daple OS=Mus musculus GN=Ccdc88c PE=1 SV=1
Length = 2009
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 51/294 (17%)
Query: 85 EAMAILEE--TVKHLRNERESHIQKE-ATLEGTVQQLQNECDLYKEKVQATLEE--TIQQ 139
E A+LEE T R+++ ++KE L+ + L+ + D K++++ LEE ++
Sbjct: 361 ETKAMLEEQLTASRARSDKVHELEKENLQLKSKLHDLELDRDADKKQIEKLLEEYMVLEM 420
Query: 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE-AALEQ 198
Q+Q+ M++ A L ++QL DL + S + L+KE +L+
Sbjct: 421 AQKQS---MKESAHLGWELEQLSKNADLSDASRKSFVFELNECASSRILKLEKENQSLQS 477
Query: 199 KISQLRDESAAL---NMKRASLE----------ERLKL-LEADKDSWTQMESVSKETI-- 242
I LRD S AL ++K LE E+L+ LE +K S +E++S+E I
Sbjct: 478 TIQGLRDTSLALEESSLKYGELEKENQQLSKKIEKLQTQLEREKQSNQDLETLSEELIRE 537
Query: 243 -----AGLSVDITQLRMQVVELEESRNNLLQ-------------------ENRQLKENVS 278
+G+ Q+ +LE+ + +L Q ENR L + V+
Sbjct: 538 KEQLQSGMEALKADRARQIKDLEQEKGHLHQAVWSLRERPQVNSTKDVEKENRALHQAVT 597
Query: 279 SLRSQLSSDESKK--LQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 330
S+LS E +K L E K+ Q EA + +L EN +L ++V L
Sbjct: 598 EAGSKLSQLELEKQQLHRDLEEAKEKGEQAEALEKELHRLEKENEQLTKEVTSL 651
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,727,027
Number of Sequences: 539616
Number of extensions: 6176568
Number of successful extensions: 37595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 2623
Number of HSP's that attempted gapping in prelim test: 29403
Number of HSP's gapped (non-prelim): 7056
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)