Query 011839
Match_columns 476
No_of_seqs 74 out of 76
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0964 Structural maintenance 99.7 1E-13 2.2E-18 154.3 30.9 181 111-292 263-456 (1200)
2 TIGR02169 SMC_prok_A chromosom 98.7 3.2E-05 7E-10 88.0 34.4 12 411-422 572-583 (1164)
3 COG1196 Smc Chromosome segrega 98.7 4.2E-05 9.2E-10 89.5 35.4 169 171-340 759-927 (1163)
4 TIGR02168 SMC_prok_B chromosom 98.7 3.7E-05 8.1E-10 87.0 32.9 13 411-423 570-582 (1179)
5 PF07888 CALCOCO1: Calcium bin 98.6 0.00048 1E-08 75.3 37.9 40 298-337 418-457 (546)
6 TIGR02168 SMC_prok_B chromosom 98.6 0.00015 3.3E-09 82.1 35.2 23 441-463 1113-1135(1179)
7 COG1196 Smc Chromosome segrega 98.5 3.9E-05 8.5E-10 89.8 28.2 273 148-425 294-580 (1163)
8 PF00038 Filament: Intermediat 98.5 0.0004 8.7E-09 69.3 30.9 217 108-325 49-290 (312)
9 KOG0971 Microtubule-associated 98.2 0.00064 1.4E-08 77.3 26.5 91 138-228 265-355 (1243)
10 PF15070 GOLGA2L5: Putative go 98.2 0.0023 5E-08 71.2 29.5 234 77-317 23-271 (617)
11 KOG0161 Myosin class II heavy 98.1 0.0051 1.1E-07 75.5 33.9 200 90-291 906-1113(1930)
12 PF15070 GOLGA2L5: Putative go 98.1 0.002 4.3E-08 71.6 27.8 191 90-292 2-219 (617)
13 PF07888 CALCOCO1: Calcium bin 98.1 0.0048 1E-07 67.7 29.7 82 98-180 149-230 (546)
14 PF00261 Tropomyosin: Tropomyo 98.1 0.0048 1E-07 60.5 26.2 68 114-182 2-69 (237)
15 PRK02224 chromosome segregatio 98.0 0.005 1.1E-07 69.7 29.7 19 111-129 204-222 (880)
16 PF00038 Filament: Intermediat 98.0 0.0079 1.7E-07 60.1 27.7 98 86-186 48-151 (312)
17 KOG4674 Uncharacterized conser 98.0 0.0092 2E-07 72.7 32.6 241 89-331 56-304 (1822)
18 KOG0161 Myosin class II heavy 98.0 0.011 2.4E-07 72.7 33.4 134 144-278 896-1030(1930)
19 PHA02562 46 endonuclease subun 98.0 0.0032 6.9E-08 67.4 26.1 90 199-288 300-392 (562)
20 KOG0250 DNA repair protein RAD 98.0 0.0049 1.1E-07 71.6 28.7 151 138-288 305-463 (1074)
21 PRK02224 chromosome segregatio 98.0 0.01 2.3E-07 67.2 30.2 84 179-263 316-400 (880)
22 KOG0250 DNA repair protein RAD 98.0 0.006 1.3E-07 70.9 28.2 187 135-328 228-425 (1074)
23 KOG0977 Nuclear envelope prote 97.9 0.0065 1.4E-07 66.7 26.8 78 240-324 296-376 (546)
24 PF09726 Macoilin: Transmembra 97.9 0.01 2.2E-07 67.0 29.0 35 298-332 623-657 (697)
25 PF00261 Tropomyosin: Tropomyo 97.9 0.01 2.2E-07 58.3 25.1 6 256-261 185-190 (237)
26 KOG4674 Uncharacterized conser 97.9 0.017 3.6E-07 70.5 31.0 39 298-336 838-876 (1822)
27 PRK11637 AmiB activator; Provi 97.9 0.011 2.4E-07 62.3 26.3 18 112-129 46-63 (428)
28 TIGR00606 rad50 rad50. This fa 97.8 0.029 6.4E-07 67.0 32.2 19 439-457 1223-1241(1311)
29 TIGR00606 rad50 rad50. This fa 97.8 0.024 5.3E-07 67.7 31.3 72 149-225 799-870 (1311)
30 PRK11637 AmiB activator; Provi 97.8 0.016 3.4E-07 61.2 26.3 74 117-191 44-117 (428)
31 PF14662 CCDC155: Coiled-coil 97.8 0.014 2.9E-07 56.7 22.7 173 92-284 15-188 (193)
32 PHA02562 46 endonuclease subun 97.7 0.021 4.5E-07 61.2 26.6 9 441-449 498-506 (562)
33 KOG0933 Structural maintenance 97.7 0.1 2.2E-06 60.8 31.6 52 113-165 708-764 (1174)
34 KOG0996 Structural maintenance 97.7 0.023 5E-07 66.7 26.6 68 89-164 782-849 (1293)
35 KOG4643 Uncharacterized coiled 97.6 0.091 2E-06 61.2 30.1 49 196-245 413-462 (1195)
36 PRK09039 hypothetical protein; 97.6 0.0052 1.1E-07 63.7 18.8 123 158-287 62-184 (343)
37 KOG0971 Microtubule-associated 97.6 0.075 1.6E-06 61.3 29.0 166 103-278 260-441 (1243)
38 KOG0976 Rho/Rac1-interacting s 97.5 0.17 3.7E-06 57.9 30.2 146 77-224 256-405 (1265)
39 PF12128 DUF3584: Protein of u 97.5 0.12 2.7E-06 61.5 30.5 38 225-262 752-793 (1201)
40 KOG0963 Transcription factor/C 97.5 0.098 2.1E-06 58.2 27.3 113 105-217 137-268 (629)
41 PRK03918 chromosome segregatio 97.5 0.22 4.8E-06 56.4 31.0 6 77-82 146-151 (880)
42 PF10174 Cast: RIM-binding pro 97.5 0.12 2.5E-06 59.4 28.7 35 181-215 228-262 (775)
43 KOG0977 Nuclear envelope prote 97.5 0.036 7.7E-07 61.1 23.7 32 94-125 44-75 (546)
44 PF14915 CCDC144C: CCDC144C pr 97.4 0.19 4E-06 51.9 29.4 87 150-236 85-179 (305)
45 COG1579 Zn-ribbon protein, pos 97.4 0.03 6.5E-07 56.0 20.9 162 114-292 11-173 (239)
46 COG1579 Zn-ribbon protein, pos 97.4 0.036 7.9E-07 55.4 21.0 131 138-288 13-144 (239)
47 KOG4643 Uncharacterized coiled 97.4 0.37 8.1E-06 56.4 31.3 144 61-212 156-336 (1195)
48 KOG0933 Structural maintenance 97.4 0.35 7.5E-06 56.6 31.0 208 97-323 713-939 (1174)
49 PF10174 Cast: RIM-binding pro 97.4 0.25 5.4E-06 56.8 30.0 24 109-132 241-264 (775)
50 KOG0946 ER-Golgi vesicle-tethe 97.3 0.051 1.1E-06 62.0 23.5 97 100-200 654-760 (970)
51 PF14662 CCDC155: Coiled-coil 97.3 0.19 4.2E-06 48.9 23.8 125 201-334 63-188 (193)
52 PF12128 DUF3584: Protein of u 97.3 0.73 1.6E-05 55.1 33.8 61 105-165 648-708 (1201)
53 KOG0996 Structural maintenance 97.3 0.65 1.4E-05 55.2 31.9 99 234-332 479-584 (1293)
54 KOG0612 Rho-associated, coiled 97.3 0.21 4.5E-06 59.3 28.1 43 298-340 718-771 (1317)
55 PRK09039 hypothetical protein; 97.2 0.034 7.4E-07 57.8 19.6 159 175-334 44-203 (343)
56 PF13851 GAS: Growth-arrest sp 97.2 0.14 3.1E-06 49.6 22.1 60 92-152 27-86 (201)
57 PF05483 SCP-1: Synaptonemal c 97.2 0.64 1.4E-05 52.6 30.7 199 77-278 416-625 (786)
58 KOG0612 Rho-associated, coiled 97.2 0.36 7.9E-06 57.4 28.5 23 307-329 699-721 (1317)
59 PF05701 WEMBL: Weak chloropla 97.2 0.49 1.1E-05 51.8 28.4 117 113-230 34-155 (522)
60 PRK01156 chromosome segregatio 97.1 0.79 1.7E-05 52.6 30.7 26 75-100 148-181 (895)
61 PRK04863 mukB cell division pr 97.1 1.2 2.7E-05 54.6 33.9 136 88-224 317-475 (1486)
62 KOG4673 Transcription factor T 97.1 0.77 1.7E-05 52.2 30.0 225 104-330 407-674 (961)
63 KOG1029 Endocytic adaptor prot 97.1 0.32 6.9E-06 55.7 26.1 137 156-292 437-580 (1118)
64 PF05483 SCP-1: Synaptonemal c 97.1 0.82 1.8E-05 51.8 32.8 223 114-340 311-563 (786)
65 PF05667 DUF812: Protein of un 97.1 0.21 4.6E-06 55.7 24.5 92 112-204 327-421 (594)
66 KOG0978 E3 ubiquitin ligase in 97.0 0.93 2E-05 51.6 30.5 104 237-340 514-623 (698)
67 PF08317 Spc7: Spc7 kinetochor 97.0 0.52 1.1E-05 48.5 27.8 118 170-291 149-267 (325)
68 KOG0964 Structural maintenance 97.0 0.29 6.2E-06 57.2 25.3 37 404-447 567-603 (1200)
69 PRK04863 mukB cell division pr 97.0 0.8 1.7E-05 56.1 30.5 141 150-291 349-493 (1486)
70 KOG4673 Transcription factor T 97.0 1 2.2E-05 51.3 30.6 96 113-209 453-555 (961)
71 PF05701 WEMBL: Weak chloropla 97.0 0.8 1.7E-05 50.2 31.8 82 150-231 173-261 (522)
72 PF09726 Macoilin: Transmembra 97.0 0.12 2.5E-06 58.7 22.0 113 163-275 460-580 (697)
73 PRK04778 septation ring format 97.0 0.54 1.2E-05 51.8 26.7 87 110-206 253-339 (569)
74 PRK04778 septation ring format 97.0 0.43 9.4E-06 52.6 25.9 112 175-286 381-508 (569)
75 PF10473 CENP-F_leu_zip: Leuci 97.0 0.086 1.9E-06 48.9 17.3 97 196-292 8-111 (140)
76 COG4942 Membrane-bound metallo 97.0 0.4 8.7E-06 51.6 24.5 182 97-292 50-241 (420)
77 KOG0999 Microtubule-associated 96.9 0.38 8.2E-06 53.4 24.4 205 112-318 7-232 (772)
78 PF09789 DUF2353: Uncharacteri 96.9 0.16 3.6E-06 52.8 20.5 193 93-285 10-227 (319)
79 PF12718 Tropomyosin_1: Tropom 96.9 0.15 3.2E-06 47.1 18.2 133 138-278 3-139 (143)
80 COG4372 Uncharacterized protei 96.8 0.81 1.7E-05 49.1 25.0 70 159-228 105-174 (499)
81 PF08317 Spc7: Spc7 kinetochor 96.8 0.093 2E-06 53.9 18.1 15 267-281 275-289 (325)
82 KOG0980 Actin-binding protein 96.8 0.86 1.9E-05 52.9 26.7 166 112-278 364-532 (980)
83 PF09728 Taxilin: Myosin-like 96.8 0.84 1.8E-05 47.1 29.6 234 102-336 25-297 (309)
84 PLN03229 acetyl-coenzyme A car 96.7 0.44 9.6E-06 54.4 23.7 224 110-334 433-728 (762)
85 COG1340 Uncharacterized archae 96.7 0.92 2E-05 46.9 26.4 111 172-290 133-250 (294)
86 PF13851 GAS: Growth-arrest sp 96.6 0.75 1.6E-05 44.7 22.4 141 113-272 27-168 (201)
87 KOG1029 Endocytic adaptor prot 96.6 0.3 6.5E-06 55.9 21.3 84 118-202 435-518 (1118)
88 PF09730 BicD: Microtubule-ass 96.6 0.47 1E-05 54.1 22.9 88 130-217 29-116 (717)
89 PRK01156 chromosome segregatio 96.6 2.2 4.7E-05 49.1 32.6 12 175-186 254-265 (895)
90 PF10473 CENP-F_leu_zip: Leuci 96.5 0.36 7.9E-06 44.8 18.1 82 202-286 56-137 (140)
91 PF05010 TACC: Transforming ac 96.5 1 2.2E-05 44.4 25.4 139 133-284 67-205 (207)
92 KOG0995 Centromere-associated 96.5 0.44 9.5E-06 52.9 21.0 103 170-273 259-365 (581)
93 PF10168 Nup88: Nuclear pore c 96.4 0.22 4.7E-06 56.8 19.4 29 188-216 636-664 (717)
94 PF05622 HOOK: HOOK protein; 96.4 0.00077 1.7E-08 75.5 0.0 25 136-160 333-357 (713)
95 KOG0946 ER-Golgi vesicle-tethe 96.4 1.2 2.7E-05 51.3 24.8 72 108-187 645-716 (970)
96 PF12718 Tropomyosin_1: Tropom 96.4 0.43 9.4E-06 44.1 17.6 63 159-221 3-65 (143)
97 PF05622 HOOK: HOOK protein; 96.3 0.00093 2E-08 74.8 0.0 99 179-277 310-421 (713)
98 PRK10929 putative mechanosensi 96.3 0.74 1.6E-05 54.9 23.4 44 237-280 191-234 (1109)
99 COG1340 Uncharacterized archae 96.3 1.6 3.5E-05 45.2 27.1 72 92-164 13-84 (294)
100 PF09730 BicD: Microtubule-ass 96.3 1.2 2.5E-05 51.1 24.0 70 147-216 32-101 (717)
101 PRK11281 hypothetical protein; 96.3 0.77 1.7E-05 54.8 23.4 39 242-280 215-253 (1113)
102 PF04111 APG6: Autophagy prote 96.3 0.061 1.3E-06 55.4 12.8 56 175-230 41-96 (314)
103 KOG0976 Rho/Rac1-interacting s 96.3 3.4 7.3E-05 48.0 30.7 25 105-129 84-108 (1265)
104 PF15619 Lebercilin: Ciliary p 96.2 1.3 2.7E-05 43.1 20.8 19 114-132 13-31 (194)
105 COG4372 Uncharacterized protei 96.2 2.3 5E-05 45.7 25.7 106 118-224 79-184 (499)
106 TIGR03007 pepcterm_ChnLen poly 96.1 1 2.2E-05 48.1 21.5 178 137-318 163-376 (498)
107 KOG4593 Mitotic checkpoint pro 96.1 3.4 7.5E-05 47.0 31.6 182 111-292 106-292 (716)
108 COG4942 Membrane-bound metallo 96.1 2.7 5.8E-05 45.5 25.4 18 300-317 227-244 (420)
109 PF15066 CAGE1: Cancer-associa 96.1 2.9 6.2E-05 45.8 26.5 124 77-209 304-436 (527)
110 TIGR01843 type_I_hlyD type I s 96.1 1.4 3E-05 45.1 21.3 43 176-218 136-178 (423)
111 PF08614 ATG16: Autophagy prot 96.0 0.045 9.7E-07 52.2 9.8 108 189-326 72-180 (194)
112 PF14915 CCDC144C: CCDC144C pr 96.0 2.3 5.1E-05 44.1 25.9 169 89-278 3-175 (305)
113 PF07111 HCR: Alpha helical co 96.0 4.1 8.8E-05 46.6 32.9 14 90-103 247-260 (739)
114 KOG1899 LAR transmembrane tyro 95.9 3.5 7.5E-05 46.8 24.5 106 89-224 108-214 (861)
115 KOG0018 Structural maintenance 95.9 4.3 9.3E-05 48.3 26.1 196 140-336 260-476 (1141)
116 PF01576 Myosin_tail_1: Myosin 95.9 0.0021 4.5E-08 73.8 0.0 141 140-281 143-305 (859)
117 KOG0999 Microtubule-associated 95.9 4 8.6E-05 45.7 24.7 110 110-226 47-156 (772)
118 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.4 3E-05 39.8 17.7 24 254-277 105-128 (132)
119 smart00787 Spc7 Spc7 kinetocho 95.8 0.81 1.8E-05 47.4 18.2 37 127-163 143-179 (312)
120 TIGR01005 eps_transp_fam exopo 95.7 2.7 5.9E-05 47.5 23.4 174 138-318 197-397 (754)
121 PF05557 MAD: Mitotic checkpoi 95.7 0.028 6.1E-07 63.2 7.8 77 253-330 502-585 (722)
122 KOG4593 Mitotic checkpoint pro 95.7 2.8 6.1E-05 47.7 22.8 200 91-292 383-624 (716)
123 COG5185 HEC1 Protein involved 95.6 4.6 0.0001 44.5 26.0 134 92-226 271-421 (622)
124 PF08614 ATG16: Autophagy prot 95.6 0.11 2.5E-06 49.4 10.3 89 146-234 92-180 (194)
125 TIGR01843 type_I_hlyD type I s 95.5 2.9 6.4E-05 42.8 21.2 8 411-418 346-353 (423)
126 COG3883 Uncharacterized protei 95.5 3.4 7.3E-05 42.3 22.3 70 137-206 33-102 (265)
127 KOG0018 Structural maintenance 95.5 7.7 0.00017 46.2 27.5 243 73-325 649-898 (1141)
128 PF10168 Nup88: Nuclear pore c 95.5 0.8 1.7E-05 52.3 18.3 52 111-163 541-593 (717)
129 PF04849 HAP1_N: HAP1 N-termin 95.5 1.3 2.8E-05 46.0 18.1 75 257-332 216-290 (306)
130 KOG0979 Structural maintenance 95.5 6.2 0.00014 46.7 25.2 85 77-162 616-705 (1072)
131 PF00769 ERM: Ezrin/radixin/mo 95.4 2.8 6.1E-05 41.9 20.0 89 133-221 38-126 (246)
132 PRK10929 putative mechanosensi 95.4 8.5 0.00018 46.3 27.0 119 173-291 176-309 (1109)
133 PF01576 Myosin_tail_1: Myosin 95.4 0.004 8.6E-08 71.6 0.0 104 148-251 263-374 (859)
134 KOG0994 Extracellular matrix g 95.4 6.6 0.00014 47.4 25.2 71 117-188 1567-1637(1758)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.4 1.9 4.2E-05 38.9 17.6 21 237-257 109-129 (132)
136 KOG1103 Predicted coiled-coil 95.4 4.2 9.1E-05 43.4 21.7 177 114-290 97-295 (561)
137 PF15619 Lebercilin: Ciliary p 95.4 2.9 6.4E-05 40.6 23.5 74 113-187 26-99 (194)
138 PF04849 HAP1_N: HAP1 N-termin 95.4 1.7 3.8E-05 45.1 18.6 15 152-166 163-177 (306)
139 TIGR03185 DNA_S_dndD DNA sulfu 95.3 6.2 0.00014 44.2 31.7 18 298-315 474-491 (650)
140 PF09755 DUF2046: Uncharacteri 95.2 4.9 0.00011 42.0 30.3 94 87-180 29-130 (310)
141 PF06785 UPF0242: Uncharacteri 95.1 4.2 9.2E-05 43.0 20.5 120 138-267 102-221 (401)
142 smart00787 Spc7 Spc7 kinetocho 95.0 5.3 0.00011 41.5 25.9 90 203-292 170-263 (312)
143 PF06160 EzrA: Septation ring 94.8 8.1 0.00018 42.9 26.6 143 147-292 276-431 (560)
144 TIGR01005 eps_transp_fam exopo 94.8 7.4 0.00016 44.1 23.3 25 108-132 196-220 (754)
145 PF11932 DUF3450: Protein of u 94.7 2.5 5.4E-05 41.8 17.3 66 238-303 75-152 (251)
146 PF04111 APG6: Autophagy prote 94.6 0.63 1.4E-05 48.0 13.3 54 109-163 39-92 (314)
147 KOG0994 Extracellular matrix g 94.6 15 0.00032 44.7 25.6 112 113-224 1511-1631(1758)
148 PF09789 DUF2353: Uncharacteri 94.6 7.1 0.00015 41.0 24.0 159 110-278 69-227 (319)
149 KOG0804 Cytoplasmic Zn-finger 94.5 1.5 3.2E-05 47.7 15.9 119 138-280 328-447 (493)
150 PRK15422 septal ring assembly 94.3 0.37 8.1E-06 41.0 8.9 53 235-287 19-72 (79)
151 TIGR03007 pepcterm_ChnLen poly 94.3 6.7 0.00015 42.0 20.7 48 244-291 314-364 (498)
152 PF13870 DUF4201: Domain of un 94.3 4.6 0.0001 37.9 20.9 112 113-224 20-131 (177)
153 PF05557 MAD: Mitotic checkpoi 94.3 0.4 8.8E-06 54.1 12.0 73 151-223 456-535 (722)
154 KOG0980 Actin-binding protein 94.2 15 0.00032 43.2 32.1 118 151-269 426-544 (980)
155 KOG0978 E3 ubiquitin ligase in 94.2 13 0.00029 42.6 29.0 135 189-325 501-642 (698)
156 KOG0804 Cytoplasmic Zn-finger 94.2 2.8 6.1E-05 45.7 17.2 80 244-341 379-458 (493)
157 PF05010 TACC: Transforming ac 94.2 6.4 0.00014 38.8 24.8 86 112-201 8-93 (207)
158 PF05911 DUF869: Plant protein 94.1 15 0.00032 42.8 27.3 138 93-230 25-173 (769)
159 PF05667 DUF812: Protein of un 94.0 13 0.00028 42.0 29.7 99 173-271 422-529 (594)
160 TIGR01000 bacteriocin_acc bact 94.0 5.9 0.00013 42.4 19.4 16 333-348 313-328 (457)
161 PF10481 CENP-F_N: Cenp-F N-te 94.0 8.6 0.00019 39.8 20.1 146 174-334 36-192 (307)
162 KOG0979 Structural maintenance 93.9 18 0.00039 43.1 24.3 76 242-317 320-401 (1072)
163 COG5185 HEC1 Protein involved 93.8 11 0.00023 41.8 20.7 136 150-285 289-427 (622)
164 PF06005 DUF904: Protein of un 93.7 1 2.2E-05 37.5 10.3 67 135-201 4-70 (72)
165 PF04156 IncA: IncA protein; 93.7 3.5 7.6E-05 38.6 15.3 44 179-222 90-133 (191)
166 PF09728 Taxilin: Myosin-like 93.5 11 0.00023 39.1 31.9 41 89-129 54-94 (309)
167 COG0419 SbcC ATPase involved i 93.5 19 0.00042 42.0 28.1 22 189-210 327-348 (908)
168 PF10146 zf-C4H2: Zinc finger- 93.4 2.3 5E-05 42.5 14.1 66 225-290 38-103 (230)
169 PLN02939 transferase, transfer 93.4 22 0.00047 42.5 28.0 34 138-171 159-192 (977)
170 PF12325 TMF_TATA_bd: TATA ele 93.3 2.8 6.1E-05 38.1 13.2 48 243-290 64-111 (120)
171 PF15294 Leu_zip: Leucine zipp 93.3 7.4 0.00016 40.1 17.6 60 97-166 118-177 (278)
172 PF09738 DUF2051: Double stran 93.2 5.7 0.00012 41.3 17.0 145 119-282 83-247 (302)
173 PLN03229 acetyl-coenzyme A car 93.2 15 0.00033 42.5 21.6 77 89-165 459-544 (762)
174 PF06160 EzrA: Septation ring 93.2 17 0.00036 40.5 30.4 249 85-334 108-423 (560)
175 PF06005 DUF904: Protein of un 93.1 0.85 1.8E-05 37.9 8.9 53 179-231 6-58 (72)
176 PF11559 ADIP: Afadin- and alp 93.0 5 0.00011 36.6 14.7 50 172-221 54-103 (151)
177 COG3074 Uncharacterized protei 93.0 0.96 2.1E-05 38.0 8.8 51 237-287 22-72 (79)
178 KOG0963 Transcription factor/C 92.9 20 0.00044 40.6 27.6 54 281-338 291-344 (629)
179 PRK11281 hypothetical protein; 92.8 28 0.00062 42.1 28.3 47 245-291 283-329 (1113)
180 PF05911 DUF869: Plant protein 92.8 24 0.00052 41.1 25.1 151 112-273 23-174 (769)
181 PRK10698 phage shock protein P 92.7 11 0.00024 37.2 19.8 52 151-202 94-145 (222)
182 PF04012 PspA_IM30: PspA/IM30 92.6 10 0.00022 36.5 21.6 119 107-235 24-142 (221)
183 KOG0995 Centromere-associated 92.6 21 0.00046 40.1 30.4 101 103-211 256-366 (581)
184 PF09787 Golgin_A5: Golgin sub 92.6 19 0.00041 39.5 23.4 11 453-463 484-494 (511)
185 PF06705 SF-assemblin: SF-asse 92.4 12 0.00026 37.0 27.6 44 88-131 8-52 (247)
186 PF12329 TMF_DNA_bd: TATA elem 92.0 1.6 3.5E-05 36.2 9.2 67 148-214 4-70 (74)
187 KOG4302 Microtubule-associated 92.0 26 0.00057 40.2 21.4 191 90-280 23-259 (660)
188 PF09304 Cortex-I_coil: Cortex 91.8 4.9 0.00011 36.1 12.5 35 154-188 42-76 (107)
189 TIGR03017 EpsF chain length de 91.8 19 0.00041 37.9 24.3 199 108-318 147-363 (444)
190 PF12329 TMF_DNA_bd: TATA elem 91.6 1.9 4E-05 35.9 9.1 70 209-278 2-71 (74)
191 PF10186 Atg14: UV radiation r 91.6 15 0.00032 36.1 17.2 17 115-131 29-45 (302)
192 PF09738 DUF2051: Double stran 91.6 7.3 0.00016 40.5 15.4 28 313-340 221-248 (302)
193 PF10481 CENP-F_N: Cenp-F N-te 90.9 4.7 0.0001 41.6 12.9 103 189-291 16-125 (307)
194 PF11932 DUF3450: Protein of u 90.8 17 0.00037 36.0 16.7 28 136-163 43-70 (251)
195 PRK15422 septal ring assembly 90.8 2.7 5.7E-05 35.9 9.3 65 137-201 6-77 (79)
196 TIGR03185 DNA_S_dndD DNA sulfu 90.7 33 0.00071 38.6 28.3 29 165-193 257-285 (650)
197 KOG2991 Splicing regulator [RN 90.6 23 0.0005 36.6 24.4 99 106-212 101-205 (330)
198 PF14197 Cep57_CLD_2: Centroso 90.5 2.7 5.8E-05 34.7 9.0 64 154-217 3-66 (69)
199 KOG0288 WD40 repeat protein Ti 90.0 16 0.00034 39.8 16.4 100 172-278 8-107 (459)
200 TIGR01000 bacteriocin_acc bact 90.0 31 0.00066 37.0 21.9 10 411-420 393-402 (457)
201 KOG4360 Uncharacterized coiled 89.9 20 0.00044 40.0 17.4 134 79-224 153-301 (596)
202 KOG4807 F-actin binding protei 89.7 34 0.00075 37.3 24.9 59 173-231 410-468 (593)
203 KOG1850 Myosin-like coiled-coi 89.7 31 0.00067 36.7 30.8 39 298-336 293-331 (391)
204 PF11559 ADIP: Afadin- and alp 89.6 16 0.00035 33.3 16.1 56 151-206 54-109 (151)
205 PF10146 zf-C4H2: Zinc finger- 89.6 14 0.0003 37.0 14.8 41 242-282 62-102 (230)
206 PF06705 SF-assemblin: SF-asse 89.5 23 0.0005 35.0 23.1 109 115-230 7-117 (247)
207 PRK10698 phage shock protein P 89.5 23 0.0005 35.0 22.0 51 107-158 25-75 (222)
208 TIGR02977 phageshock_pspA phag 89.5 22 0.00048 34.7 20.9 116 107-233 25-141 (219)
209 PF00769 ERM: Ezrin/radixin/mo 89.4 25 0.00055 35.2 17.2 34 170-203 5-38 (246)
210 PF04912 Dynamitin: Dynamitin 89.0 19 0.0004 38.1 16.1 143 146-292 206-367 (388)
211 PRK10884 SH3 domain-containing 88.9 5.4 0.00012 39.2 11.3 36 241-276 133-168 (206)
212 PF04582 Reo_sigmaC: Reovirus 88.8 0.79 1.7E-05 47.9 5.7 126 145-292 31-157 (326)
213 COG1842 PspA Phage shock prote 88.7 28 0.0006 34.8 16.8 48 237-284 96-143 (225)
214 PF08647 BRE1: BRE1 E3 ubiquit 88.6 14 0.00031 31.8 12.5 68 191-258 3-70 (96)
215 PF13166 AAA_13: AAA domain 88.6 46 0.001 37.2 24.1 22 446-467 632-654 (712)
216 KOG0249 LAR-interacting protei 88.5 41 0.00089 39.2 18.9 25 306-330 300-324 (916)
217 PF06785 UPF0242: Uncharacteri 88.4 34 0.00073 36.6 17.1 50 241-290 135-184 (401)
218 KOG1003 Actin filament-coating 88.4 28 0.00061 34.5 23.6 42 237-278 113-154 (205)
219 KOG0288 WD40 repeat protein Ti 88.3 18 0.0004 39.3 15.5 61 156-216 13-73 (459)
220 PRK10884 SH3 domain-containing 88.3 8.4 0.00018 37.9 12.1 22 108-129 88-109 (206)
221 KOG0993 Rab5 GTPase effector R 88.1 45 0.00099 36.5 21.8 28 138-165 302-329 (542)
222 PF15066 CAGE1: Cancer-associa 87.9 49 0.0011 36.7 24.1 175 112-291 330-508 (527)
223 PF04582 Reo_sigmaC: Reovirus 87.8 1.1 2.3E-05 47.1 5.9 112 173-292 38-150 (326)
224 KOG0962 DNA repair protein RAD 87.7 80 0.0017 39.0 26.8 43 105-148 725-767 (1294)
225 TIGR02338 gimC_beta prefoldin, 87.6 7.8 0.00017 33.9 10.4 41 246-286 66-106 (110)
226 PF04012 PspA_IM30: PspA/IM30 87.4 28 0.00061 33.5 20.5 116 145-288 26-146 (221)
227 PF13514 AAA_27: AAA domain 87.2 75 0.0016 38.2 30.8 40 250-289 892-931 (1111)
228 PF10234 Cluap1: Clusterin-ass 87.2 27 0.00059 35.8 15.4 114 113-227 120-240 (267)
229 PF09304 Cortex-I_coil: Cortex 87.1 23 0.00049 32.0 14.3 85 144-230 11-95 (107)
230 COG3074 Uncharacterized protei 87.0 10 0.00022 32.0 10.0 52 137-188 6-57 (79)
231 PF12795 MscS_porin: Mechanose 86.8 33 0.00072 33.7 24.0 13 86-98 19-31 (240)
232 PF10226 DUF2216: Uncharacteri 86.5 31 0.00067 34.0 14.6 23 313-339 124-146 (195)
233 PF02994 Transposase_22: L1 tr 86.4 4.1 8.8E-05 43.1 9.4 79 244-324 141-225 (370)
234 COG3883 Uncharacterized protei 86.4 43 0.00093 34.5 23.7 54 109-163 48-101 (265)
235 KOG0239 Kinesin (KAR3 subfamil 86.3 58 0.0013 37.5 18.9 87 138-224 178-267 (670)
236 TIGR03017 EpsF chain length de 86.2 48 0.001 34.9 21.2 25 107-131 172-196 (444)
237 PF13870 DUF4201: Domain of un 86.2 30 0.00065 32.5 21.3 37 179-215 65-101 (177)
238 PF03962 Mnd1: Mnd1 family; I 85.6 19 0.0004 34.8 12.7 99 190-289 61-163 (188)
239 PLN02939 transferase, transfer 85.6 58 0.0013 39.1 18.9 15 317-331 323-337 (977)
240 KOG4360 Uncharacterized coiled 85.5 60 0.0013 36.5 17.7 53 184-236 212-267 (596)
241 KOG4302 Microtubule-associated 85.4 77 0.0017 36.5 20.2 185 136-334 55-263 (660)
242 PF14197 Cep57_CLD_2: Centroso 85.2 9.3 0.0002 31.6 9.0 56 111-167 3-58 (69)
243 TIGR02449 conserved hypothetic 84.8 8.7 0.00019 31.7 8.6 47 243-289 17-63 (65)
244 COG2433 Uncharacterized conser 84.7 13 0.00029 42.1 12.6 12 68-80 318-329 (652)
245 KOG0249 LAR-interacting protei 84.5 49 0.0011 38.6 16.9 41 241-281 217-257 (916)
246 PF07111 HCR: Alpha helical co 84.1 91 0.002 36.2 28.8 37 188-224 239-275 (739)
247 PF07106 TBPIP: Tat binding pr 83.7 5.3 0.00011 37.2 7.9 24 266-289 114-137 (169)
248 KOG1103 Predicted coiled-coil 83.6 50 0.0011 35.7 15.6 45 92-136 118-162 (561)
249 PRK03947 prefoldin subunit alp 83.4 27 0.00059 31.4 12.2 45 244-288 91-135 (140)
250 PF15397 DUF4618: Domain of un 83.3 58 0.0013 33.4 27.2 52 241-292 180-231 (258)
251 KOG4603 TBP-1 interacting prot 83.3 5.5 0.00012 38.8 7.9 63 229-291 81-146 (201)
252 PF15450 DUF4631: Domain of un 83.1 85 0.0019 35.2 22.1 106 197-306 411-517 (531)
253 PRK03947 prefoldin subunit alp 83.0 35 0.00075 30.8 12.6 43 238-280 92-134 (140)
254 PF13166 AAA_13: AAA domain 83.0 86 0.0019 35.1 25.6 38 254-291 417-454 (712)
255 PF05384 DegS: Sensor protein 82.9 44 0.00096 31.8 17.1 94 185-278 28-122 (159)
256 PF10498 IFT57: Intra-flagella 82.8 60 0.0013 34.6 16.1 30 249-278 289-318 (359)
257 KOG0240 Kinesin (SMY1 subfamil 82.8 93 0.002 35.4 20.6 25 77-101 347-371 (607)
258 COG2433 Uncharacterized conser 82.7 18 0.00039 41.0 12.6 18 413-430 590-607 (652)
259 KOG0982 Centrosomal protein Nu 82.5 84 0.0018 34.7 25.9 22 24-45 105-126 (502)
260 PF12709 Kinetocho_Slk19: Cent 82.4 33 0.00071 29.9 11.8 52 166-217 23-75 (87)
261 KOG2751 Beclin-like protein [S 82.0 57 0.0012 35.8 15.6 57 179-235 178-234 (447)
262 PF12325 TMF_TATA_bd: TATA ele 81.4 42 0.00091 30.5 13.9 17 113-129 23-39 (120)
263 TIGR01010 BexC_CtrB_KpsE polys 81.2 36 0.00077 35.2 13.6 78 241-318 215-299 (362)
264 PRK06975 bifunctional uroporph 81.1 40 0.00086 38.4 14.9 124 181-318 375-503 (656)
265 PRK12704 phosphodiesterase; Pr 81.1 97 0.0021 34.5 19.2 10 309-318 266-275 (520)
266 KOG0962 DNA repair protein RAD 81.1 1.5E+02 0.0033 36.7 30.6 114 90-208 800-916 (1294)
267 KOG1853 LIS1-interacting prote 81.0 73 0.0016 33.1 21.7 87 190-283 90-179 (333)
268 KOG4809 Rab6 GTPase-interactin 80.9 1.1E+02 0.0023 34.9 20.2 60 150-209 353-412 (654)
269 PF05384 DegS: Sensor protein 80.6 54 0.0012 31.2 18.7 41 89-129 3-43 (159)
270 PRK11519 tyrosine kinase; Prov 80.1 1.2E+02 0.0025 34.8 18.4 34 134-167 266-299 (719)
271 PF10498 IFT57: Intra-flagella 80.0 51 0.0011 35.1 14.4 62 169-230 258-319 (359)
272 PF08581 Tup_N: Tup N-terminal 79.8 37 0.0008 28.9 11.0 71 113-187 4-74 (79)
273 COG1842 PspA Phage shock prote 79.4 71 0.0015 31.9 23.8 116 109-227 27-142 (225)
274 PF10211 Ax_dynein_light: Axon 79.4 62 0.0014 31.2 15.0 15 234-248 170-185 (189)
275 PF07989 Microtub_assoc: Micro 79.3 14 0.00031 30.9 8.1 67 195-261 4-71 (75)
276 PF10212 TTKRSYEDQ: Predicted 79.0 1.2E+02 0.0025 34.2 17.3 66 247-319 441-506 (518)
277 PF09787 Golgin_A5: Golgin sub 78.7 1.1E+02 0.0024 33.7 25.7 48 81-128 151-202 (511)
278 PF12795 MscS_porin: Mechanose 78.1 73 0.0016 31.3 20.6 22 201-222 116-137 (240)
279 KOG1003 Actin filament-coating 78.1 77 0.0017 31.6 23.2 79 112-191 52-130 (205)
280 PF09744 Jnk-SapK_ap_N: JNK_SA 77.8 62 0.0013 30.8 12.8 14 194-207 25-38 (158)
281 PF10234 Cluap1: Clusterin-ass 77.7 60 0.0013 33.4 13.6 80 138-224 179-258 (267)
282 PF08647 BRE1: BRE1 E3 ubiquit 77.2 47 0.001 28.7 11.9 80 138-217 13-92 (96)
283 COG4026 Uncharacterized protei 77.2 33 0.00071 34.9 11.3 28 137-164 144-171 (290)
284 PF07106 TBPIP: Tat binding pr 76.7 19 0.00041 33.5 9.1 56 237-292 76-133 (169)
285 KOG4809 Rab6 GTPase-interactin 76.6 1.4E+02 0.0031 33.9 21.9 15 310-324 590-604 (654)
286 COG4717 Uncharacterized conser 76.6 1.8E+02 0.0038 34.9 26.4 94 78-174 556-652 (984)
287 PF09755 DUF2046: Uncharacteri 76.6 1.1E+02 0.0023 32.4 23.8 47 89-136 24-70 (310)
288 TIGR03752 conj_TIGR03752 integ 76.5 17 0.00037 40.0 9.9 74 245-318 57-130 (472)
289 PRK09841 cryptic autophosphory 76.4 1.5E+02 0.0032 34.0 19.3 56 108-166 243-298 (726)
290 KOG1962 B-cell receptor-associ 76.1 40 0.00086 33.8 11.5 38 241-278 173-210 (216)
291 PF15450 DUF4631: Domain of un 75.8 1.4E+02 0.0031 33.5 30.2 89 201-292 347-436 (531)
292 KOG3091 Nuclear pore complex, 75.6 1.1E+02 0.0024 34.2 15.6 86 101-187 343-428 (508)
293 TIGR03752 conj_TIGR03752 integ 75.4 24 0.00053 38.9 10.7 48 175-222 57-104 (472)
294 PF03962 Mnd1: Mnd1 family; I 75.1 37 0.0008 32.8 10.8 23 142-164 103-125 (188)
295 PF06156 DUF972: Protein of un 75.0 14 0.00029 33.0 7.2 52 238-289 6-57 (107)
296 KOG2196 Nuclear porin [Nuclear 74.9 1.1E+02 0.0023 31.5 16.8 52 179-230 73-124 (254)
297 PF01920 Prefoldin_2: Prefoldi 74.5 50 0.0011 27.6 10.5 41 238-278 60-100 (106)
298 TIGR02680 conserved hypothetic 74.5 2.3E+02 0.005 35.2 28.5 11 58-68 708-718 (1353)
299 PRK00106 hypothetical protein; 74.2 1.2E+02 0.0026 34.2 15.8 12 307-318 279-290 (535)
300 PRK11519 tyrosine kinase; Prov 74.2 81 0.0018 36.1 14.9 48 271-318 342-391 (719)
301 PRK09841 cryptic autophosphory 73.8 78 0.0017 36.2 14.7 50 269-318 340-391 (726)
302 KOG0239 Kinesin (KAR3 subfamil 73.7 1.8E+02 0.0039 33.6 18.1 21 146-166 172-192 (670)
303 PF08826 DMPK_coil: DMPK coile 73.5 41 0.00089 27.4 9.0 55 160-214 1-55 (61)
304 PF04871 Uso1_p115_C: Uso1 / p 73.4 76 0.0017 29.2 13.6 34 259-292 82-115 (136)
305 PRK10246 exonuclease subunit S 73.1 2.2E+02 0.0047 34.3 28.0 35 198-232 724-758 (1047)
306 KOG0240 Kinesin (SMY1 subfamil 72.9 1.8E+02 0.0039 33.3 17.7 53 210-265 482-535 (607)
307 KOG2077 JNK/SAPK-associated pr 72.9 75 0.0016 36.3 13.6 57 138-194 318-374 (832)
308 PF01920 Prefoldin_2: Prefoldi 72.8 45 0.00097 27.9 9.7 41 244-284 59-99 (106)
309 TIGR00634 recN DNA repair prot 72.7 1.6E+02 0.0035 32.7 22.5 24 269-292 347-370 (563)
310 PRK09343 prefoldin subunit bet 72.6 73 0.0016 28.6 12.9 38 250-287 74-111 (121)
311 PF12252 SidE: Dot/Icm substra 72.6 2.4E+02 0.0053 34.7 19.5 19 115-133 1065-1083(1439)
312 PF06818 Fez1: Fez1; InterPro 72.3 1.1E+02 0.0023 30.5 18.9 49 179-227 54-102 (202)
313 PF05266 DUF724: Protein of un 72.2 88 0.0019 30.5 12.7 14 89-102 54-67 (190)
314 TIGR02231 conserved hypothetic 72.2 36 0.00078 37.2 11.2 44 245-288 129-172 (525)
315 KOG0243 Kinesin-like protein [ 72.0 2.4E+02 0.0052 34.4 25.2 111 112-222 403-531 (1041)
316 PRK09343 prefoldin subunit bet 71.7 76 0.0017 28.5 13.1 23 242-264 80-102 (121)
317 PF09731 Mitofilin: Mitochondr 71.4 1.7E+02 0.0037 32.4 26.8 23 107-129 245-267 (582)
318 KOG0243 Kinesin-like protein [ 71.2 2.5E+02 0.0054 34.2 24.1 7 59-65 335-341 (1041)
319 PRK00409 recombination and DNA 70.9 1.1E+02 0.0024 35.7 15.2 47 186-232 522-568 (782)
320 PF05700 BCAS2: Breast carcino 70.8 1.1E+02 0.0024 30.0 16.4 87 188-284 133-219 (221)
321 TIGR02338 gimC_beta prefoldin, 70.0 76 0.0016 27.8 11.8 32 258-289 71-102 (110)
322 PF12240 Angiomotin_C: Angiomo 70.0 1.2E+02 0.0027 30.2 15.2 38 246-283 128-165 (205)
323 KOG3990 Uncharacterized conser 69.9 51 0.0011 34.0 10.8 84 59-155 208-294 (305)
324 PF15254 CCDC14: Coiled-coil d 69.3 2.4E+02 0.0053 33.4 19.7 85 175-262 439-523 (861)
325 PF05266 DUF724: Protein of un 69.3 90 0.0019 30.4 12.0 9 81-89 12-20 (190)
326 TIGR01010 BexC_CtrB_KpsE polys 69.3 1.5E+02 0.0032 30.8 17.9 82 134-215 169-259 (362)
327 smart00502 BBC B-Box C-termina 69.2 69 0.0015 27.0 14.6 118 194-336 3-123 (127)
328 PF13514 AAA_27: AAA domain 69.0 2.7E+02 0.0058 33.7 32.0 33 302-334 894-926 (1111)
329 cd00584 Prefoldin_alpha Prefol 68.9 46 0.001 29.4 9.3 44 243-286 83-126 (129)
330 PF08826 DMPK_coil: DMPK coile 68.8 29 0.00063 28.3 7.2 46 237-282 15-60 (61)
331 COG4026 Uncharacterized protei 68.5 52 0.0011 33.6 10.3 50 175-224 161-210 (290)
332 KOG0982 Centrosomal protein Nu 68.4 2E+02 0.0043 32.0 19.2 11 77-87 222-232 (502)
333 PF02183 HALZ: Homeobox associ 68.3 16 0.00035 27.9 5.3 41 181-221 2-42 (45)
334 PF15397 DUF4618: Domain of un 68.2 1.5E+02 0.0033 30.5 27.0 139 178-332 64-221 (258)
335 TIGR02231 conserved hypothetic 68.2 67 0.0014 35.1 12.2 39 189-227 129-167 (525)
336 PF02841 GBP_C: Guanylate-bind 68.0 1.4E+02 0.0031 30.3 16.0 24 138-161 158-181 (297)
337 PF06008 Laminin_I: Laminin Do 68.0 1.3E+02 0.0029 29.9 22.6 213 111-335 29-244 (264)
338 PRK10246 exonuclease subunit S 68.0 2.8E+02 0.006 33.5 31.6 40 183-222 716-755 (1047)
339 cd00632 Prefoldin_beta Prefold 67.9 80 0.0017 27.3 12.8 37 250-286 66-102 (105)
340 PF09744 Jnk-SapK_ap_N: JNK_SA 67.4 1.2E+02 0.0025 28.9 17.2 24 188-211 86-109 (158)
341 PF10212 TTKRSYEDQ: Predicted 67.2 1.7E+02 0.0038 32.9 14.9 79 178-260 435-514 (518)
342 COG3206 GumC Uncharacterized p 66.9 1.9E+02 0.004 31.1 19.8 27 298-324 374-400 (458)
343 TIGR02894 DNA_bind_RsfA transc 66.7 75 0.0016 30.6 10.6 46 161-206 102-147 (161)
344 PRK10920 putative uroporphyrin 66.6 1.6E+02 0.0034 31.9 14.2 42 195-236 96-138 (390)
345 PF12777 MT: Microtubule-bindi 66.4 25 0.00055 36.5 8.2 32 199-230 229-260 (344)
346 KOG4196 bZIP transcription fac 66.2 1.1E+02 0.0024 28.7 11.2 52 153-205 65-116 (135)
347 PF10211 Ax_dynein_light: Axon 66.0 1.3E+02 0.0029 29.0 13.2 26 197-222 126-151 (189)
348 PLN03188 kinesin-12 family pro 65.5 3.5E+02 0.0076 33.8 23.6 137 140-280 1049-1192(1320)
349 cd00890 Prefoldin Prefoldin is 65.3 75 0.0016 27.6 9.8 42 245-286 85-126 (129)
350 KOG4603 TBP-1 interacting prot 65.2 1.5E+02 0.0032 29.3 12.3 26 138-163 119-144 (201)
351 KOG1853 LIS1-interacting prote 65.1 1.8E+02 0.0039 30.3 20.4 10 227-236 147-156 (333)
352 PF09486 HrpB7: Bacterial type 65.0 1.3E+02 0.0029 28.7 14.3 111 182-292 20-131 (158)
353 PRK13169 DNA replication intia 64.9 30 0.00066 31.1 7.3 49 239-287 7-55 (110)
354 KOG3091 Nuclear pore complex, 64.5 2.1E+02 0.0046 32.1 14.8 66 159-224 337-402 (508)
355 PF14992 TMCO5: TMCO5 family 64.2 1.9E+02 0.0041 30.2 14.8 35 94-128 13-47 (280)
356 KOG4460 Nuclear pore complex, 64.1 2.7E+02 0.0059 32.0 21.5 28 303-330 708-735 (741)
357 TIGR01069 mutS2 MutS2 family p 64.1 1.4E+02 0.0029 35.0 14.1 41 194-234 525-565 (771)
358 PF10267 Tmemb_cc2: Predicted 63.1 2.3E+02 0.005 30.8 17.1 20 269-288 299-318 (395)
359 PF12761 End3: Actin cytoskele 61.7 67 0.0014 31.8 9.5 36 239-274 159-194 (195)
360 KOG4787 Uncharacterized conser 61.6 3.1E+02 0.0067 31.8 16.0 105 113-217 437-548 (852)
361 PF15290 Syntaphilin: Golgi-lo 61.5 1E+02 0.0022 32.4 11.1 84 203-291 63-147 (305)
362 PF07798 DUF1640: Protein of u 61.4 1.5E+02 0.0032 28.1 18.8 35 94-128 8-42 (177)
363 KOG0247 Kinesin-like protein [ 61.4 2E+02 0.0043 33.9 14.4 119 138-276 530-648 (809)
364 COG1382 GimC Prefoldin, chaper 61.3 1.3E+02 0.0029 27.5 13.1 37 249-285 72-108 (119)
365 PF11180 DUF2968: Protein of u 61.0 1.8E+02 0.0038 28.9 12.2 38 192-229 99-136 (192)
366 PF07889 DUF1664: Protein of u 61.0 1.4E+02 0.003 27.6 11.5 48 241-288 76-123 (126)
367 PF00170 bZIP_1: bZIP transcri 60.9 30 0.00066 27.3 5.9 33 256-288 28-60 (64)
368 KOG2398 Predicted proline-seri 60.9 3.1E+02 0.0066 31.5 19.9 74 183-256 138-216 (611)
369 PF02090 SPAM: Salmonella surf 60.8 1.6E+02 0.0034 28.1 15.0 99 138-242 26-124 (147)
370 PRK04406 hypothetical protein; 60.7 52 0.0011 27.6 7.5 44 245-288 9-52 (75)
371 cd07627 BAR_Vps5p The Bin/Amph 60.1 1.7E+02 0.0037 28.4 26.1 197 85-313 11-207 (216)
372 PF05529 Bap31: B-cell recepto 60.0 59 0.0013 30.8 8.8 31 250-280 157-187 (192)
373 PF06156 DUF972: Protein of un 60.0 58 0.0013 29.1 8.1 52 174-225 5-56 (107)
374 PF05377 FlaC_arch: Flagella a 59.6 34 0.00073 27.5 5.8 26 255-280 8-33 (55)
375 PF04880 NUDE_C: NUDE protein, 59.4 11 0.00024 36.1 3.7 45 159-214 3-47 (166)
376 PF14282 FlxA: FlxA-like prote 59.4 38 0.00083 29.8 6.8 53 239-291 18-74 (106)
377 KOG2751 Beclin-like protein [S 59.2 2.1E+02 0.0046 31.6 13.5 30 172-201 206-235 (447)
378 TIGR02449 conserved hypothetic 58.9 60 0.0013 26.8 7.4 36 138-173 17-52 (65)
379 PRK02119 hypothetical protein; 58.9 50 0.0011 27.5 7.1 18 253-270 15-32 (73)
380 PF01486 K-box: K-box region; 58.6 67 0.0015 27.5 8.1 40 217-256 58-98 (100)
381 PF07851 TMPIT: TMPIT-like pro 58.1 1.1E+02 0.0023 32.6 10.9 85 191-289 4-89 (330)
382 KOG4677 Golgi integral membran 58.0 3.1E+02 0.0068 30.7 16.9 184 118-315 307-512 (554)
383 PF04871 Uso1_p115_C: Uso1 / p 57.4 1.6E+02 0.0035 27.2 13.4 26 266-291 82-107 (136)
384 KOG4001 Axonemal dynein light 57.0 1.5E+02 0.0033 30.0 11.1 33 190-222 184-216 (259)
385 PF02994 Transposase_22: L1 tr 56.3 32 0.0007 36.4 6.9 8 77-84 41-48 (370)
386 PF12777 MT: Microtubule-bindi 56.1 56 0.0012 34.0 8.5 41 179-219 237-277 (344)
387 KOG1899 LAR transmembrane tyro 56.0 3.9E+02 0.0085 31.2 16.1 152 150-322 133-292 (861)
388 PF13094 CENP-Q: CENP-Q, a CEN 55.8 68 0.0015 29.6 8.2 32 199-230 21-52 (160)
389 PF13747 DUF4164: Domain of un 55.3 1.4E+02 0.003 25.8 11.7 51 173-223 35-85 (89)
390 KOG2264 Exostosin EXT1L [Signa 54.9 66 0.0014 36.8 9.1 63 243-320 89-151 (907)
391 PF06818 Fez1: Fez1; InterPro 54.3 2.4E+02 0.0051 28.2 21.3 95 115-210 12-106 (202)
392 PRK00295 hypothetical protein; 54.0 63 0.0014 26.5 6.8 10 252-261 10-19 (68)
393 cd00632 Prefoldin_beta Prefold 53.8 1.5E+02 0.0032 25.7 12.3 40 241-280 64-103 (105)
394 PRK00736 hypothetical protein; 53.6 69 0.0015 26.2 7.0 41 249-289 7-47 (68)
395 PRK00295 hypothetical protein; 52.9 84 0.0018 25.8 7.4 22 266-287 31-52 (68)
396 KOG0993 Rab5 GTPase effector R 52.7 3.7E+02 0.0079 29.9 22.7 32 309-343 501-532 (542)
397 PRK14011 prefoldin subunit alp 52.5 2E+02 0.0044 26.9 10.9 42 243-284 84-125 (144)
398 TIGR03319 YmdA_YtgF conserved 52.4 3.8E+02 0.0082 30.0 21.8 12 307-318 258-269 (514)
399 PF02970 TBCA: Tubulin binding 52.3 1.3E+02 0.0029 25.8 8.8 34 198-231 7-41 (90)
400 PF05700 BCAS2: Breast carcino 52.1 2.4E+02 0.0053 27.7 15.3 85 225-327 128-212 (221)
401 TIGR00293 prefoldin, archaeal 52.0 1.6E+02 0.0036 25.8 9.7 41 244-284 83-123 (126)
402 KOG2129 Uncharacterized conser 52.0 3.8E+02 0.0082 29.9 20.1 147 73-224 151-325 (552)
403 PRK13169 DNA replication intia 51.5 96 0.0021 28.0 8.1 50 175-224 6-55 (110)
404 PF05529 Bap31: B-cell recepto 51.5 1.7E+02 0.0036 27.8 10.3 27 234-260 161-188 (192)
405 PF14992 TMCO5: TMCO5 family 51.4 3.1E+02 0.0067 28.7 17.0 38 111-149 9-46 (280)
406 PF02183 HALZ: Homeobox associ 50.9 61 0.0013 24.7 5.8 40 245-284 3-42 (45)
407 PF12761 End3: Actin cytoskele 50.7 1.6E+02 0.0035 29.1 10.2 31 247-277 160-190 (195)
408 PF15254 CCDC14: Coiled-coil d 49.9 5.2E+02 0.011 30.8 17.5 37 188-224 491-527 (861)
409 PF12004 DUF3498: Domain of un 49.8 5.4 0.00012 44.0 0.0 26 206-231 409-434 (495)
410 PF06810 Phage_GP20: Phage min 49.5 87 0.0019 29.5 7.9 46 260-310 19-64 (155)
411 PF02090 SPAM: Salmonella surf 49.3 2.4E+02 0.0053 26.9 11.6 79 202-280 34-113 (147)
412 TIGR02977 phageshock_pspA phag 48.9 2.7E+02 0.0058 27.2 20.5 48 239-286 98-145 (219)
413 PF15456 Uds1: Up-regulated Du 48.8 2.2E+02 0.0047 26.1 10.2 39 256-294 76-114 (124)
414 PRK02119 hypothetical protein; 48.7 93 0.002 25.9 7.1 30 255-284 10-39 (73)
415 PF04102 SlyX: SlyX; InterPro 48.5 91 0.002 25.4 6.9 21 266-286 30-50 (69)
416 KOG1962 B-cell receptor-associ 48.3 2.4E+02 0.0053 28.4 11.1 48 237-284 162-209 (216)
417 COG1730 GIM5 Predicted prefold 47.9 2.5E+02 0.0053 26.5 11.5 27 174-200 10-36 (145)
418 PF06632 XRCC4: DNA double-str 47.7 3.4E+02 0.0073 29.0 12.7 36 186-224 171-206 (342)
419 PF04728 LPP: Lipoprotein leuc 47.7 1.5E+02 0.0032 24.0 7.9 37 256-292 5-41 (56)
420 PF04977 DivIC: Septum formati 47.6 61 0.0013 25.8 5.8 32 249-280 19-50 (80)
421 KOG0247 Kinesin-like protein [ 47.5 4E+02 0.0086 31.6 13.9 125 76-206 485-614 (809)
422 PF07902 Gp58: gp58-like prote 47.5 22 0.00048 40.3 4.2 46 233-278 260-306 (601)
423 COG4477 EzrA Negative regulato 47.3 4.9E+02 0.011 29.8 28.7 80 237-316 379-480 (570)
424 COG1382 GimC Prefoldin, chaper 47.1 2.3E+02 0.0051 26.0 13.0 35 238-272 75-109 (119)
425 COG5293 Predicted ATPase [Gene 47.0 4.7E+02 0.01 29.5 22.4 54 208-261 316-370 (591)
426 PF10226 DUF2216: Uncharacteri 47.0 3E+02 0.0066 27.3 15.1 101 179-284 43-145 (195)
427 PF04728 LPP: Lipoprotein leuc 46.9 78 0.0017 25.6 6.1 43 244-286 7-49 (56)
428 PF13945 NST1: Salt tolerance 46.8 1.5E+02 0.0032 29.3 9.2 11 104-114 124-134 (190)
429 PRK15178 Vi polysaccharide exp 46.8 4.4E+02 0.0095 29.1 14.1 78 237-314 276-368 (434)
430 PRK00736 hypothetical protein; 46.6 1.1E+02 0.0025 25.0 7.2 21 266-286 31-51 (68)
431 TIGR02894 DNA_bind_RsfA transc 46.4 2.1E+02 0.0045 27.7 9.9 32 191-222 90-121 (161)
432 PF05615 THOC7: Tho complex su 46.3 2.2E+02 0.0049 25.6 12.0 63 139-201 43-105 (139)
433 PF06637 PV-1: PV-1 protein (P 46.2 4.4E+02 0.0096 29.0 15.3 40 250-289 352-391 (442)
434 PRK04406 hypothetical protein; 46.1 1.1E+02 0.0023 25.8 7.1 47 241-287 12-58 (75)
435 PRK02793 phi X174 lysis protei 45.7 1.1E+02 0.0023 25.4 7.0 20 251-270 12-31 (72)
436 PF03915 AIP3: Actin interacti 45.5 4.5E+02 0.0098 28.9 16.4 103 196-315 204-307 (424)
437 PRK02793 phi X174 lysis protei 45.4 1.1E+02 0.0024 25.3 7.1 32 256-287 24-55 (72)
438 KOG4438 Centromere-associated 44.8 4.8E+02 0.01 29.0 23.9 35 190-224 215-249 (446)
439 PF10805 DUF2730: Protein of u 44.7 1.6E+02 0.0036 25.8 8.5 28 197-224 34-61 (106)
440 smart00338 BRLZ basic region l 44.4 75 0.0016 25.1 5.8 39 253-291 25-63 (65)
441 PRK10803 tol-pal system protei 44.4 1.4E+02 0.003 30.2 8.9 33 155-187 39-71 (263)
442 PF13863 DUF4200: Domain of un 44.3 2.2E+02 0.0047 24.9 14.6 103 178-291 1-104 (126)
443 PF14712 Snapin_Pallidin: Snap 44.1 1.9E+02 0.0041 24.1 9.8 41 87-127 9-49 (92)
444 PF05064 Nsp1_C: Nsp1-like C-t 44.0 50 0.0011 29.5 5.2 85 179-291 17-101 (116)
445 PF03148 Tektin: Tektin family 43.9 4.3E+02 0.0093 28.2 20.7 18 89-106 205-222 (384)
446 PRK10361 DNA recombination pro 43.9 5.1E+02 0.011 29.0 23.4 12 453-464 351-362 (475)
447 PF05278 PEARLI-4: Arabidopsis 43.6 4E+02 0.0087 27.7 15.0 33 259-291 212-244 (269)
448 PRK00106 hypothetical protein; 43.4 5.4E+02 0.012 29.2 23.5 14 453-466 430-443 (535)
449 PF05278 PEARLI-4: Arabidopsis 43.3 4E+02 0.0087 27.7 14.6 37 188-224 204-240 (269)
450 PF05377 FlaC_arch: Flagella a 43.1 81 0.0017 25.4 5.6 36 238-273 5-40 (55)
451 TIGR03495 phage_LysB phage lys 43.0 2.6E+02 0.0057 26.1 9.8 79 231-324 16-95 (135)
452 PF11180 DUF2968: Protein of u 42.7 3.5E+02 0.0076 26.8 11.3 51 138-188 108-158 (192)
453 PF06810 Phage_GP20: Phage min 42.7 2.9E+02 0.0064 25.9 10.4 37 186-222 8-44 (155)
454 PRK04325 hypothetical protein; 42.5 1.3E+02 0.0028 25.0 7.1 19 252-270 14-32 (74)
455 PF07851 TMPIT: TMPIT-like pro 42.4 1.2E+02 0.0026 32.2 8.4 74 237-310 8-81 (330)
456 PF03148 Tektin: Tektin family 42.4 4.5E+02 0.0098 28.0 27.2 88 203-291 242-347 (384)
457 COG4913 Uncharacterized protei 42.2 6.8E+02 0.015 30.0 20.5 74 87-166 618-691 (1104)
458 COG4477 EzrA Negative regulato 42.1 5.8E+02 0.013 29.2 23.2 56 237-292 400-478 (570)
459 TIGR00414 serS seryl-tRNA synt 41.7 1.5E+02 0.0033 31.9 9.3 39 249-287 71-109 (418)
460 PF08606 Prp19: Prp19/Pso4-lik 41.6 2.1E+02 0.0045 24.2 8.0 60 256-330 10-69 (70)
461 PF09731 Mitofilin: Mitochondr 41.5 5.3E+02 0.011 28.5 23.1 17 453-469 523-539 (582)
462 PF10224 DUF2205: Predicted co 41.4 1.7E+02 0.0037 25.1 7.7 49 169-217 15-63 (80)
463 TIGR02680 conserved hypothetic 41.4 8.1E+02 0.018 30.7 33.0 33 89-121 746-778 (1353)
464 PRK10361 DNA recombination pro 41.3 5.5E+02 0.012 28.7 25.1 26 139-164 64-89 (475)
465 PF13874 Nup54: Nucleoporin co 41.2 2E+02 0.0044 26.3 8.8 50 175-224 49-98 (141)
466 KOG0992 Uncharacterized conser 41.2 5.9E+02 0.013 29.0 26.7 46 155-200 126-171 (613)
467 PLN03188 kinesin-12 family pro 41.2 8.4E+02 0.018 30.7 24.3 48 140-187 1098-1145(1320)
468 KOG2264 Exostosin EXT1L [Signa 41.1 76 0.0017 36.3 7.0 40 241-280 108-147 (907)
469 PRK11546 zraP zinc resistance 40.9 86 0.0019 29.6 6.4 61 220-280 48-108 (143)
470 KOG2196 Nuclear porin [Nuclear 40.8 4.3E+02 0.0093 27.3 17.8 137 134-292 91-236 (254)
471 PF02050 FliJ: Flagellar FliJ 40.8 2.1E+02 0.0045 23.6 12.5 14 217-230 17-30 (123)
472 PLN02678 seryl-tRNA synthetase 40.5 2E+02 0.0043 31.6 10.0 81 203-287 31-111 (448)
473 PRK00888 ftsB cell division pr 39.7 90 0.0019 27.6 6.0 36 248-283 28-63 (105)
474 KOG3990 Uncharacterized conser 39.3 1.3E+02 0.0028 31.3 7.7 43 155-197 252-294 (305)
475 PF10805 DUF2730: Protein of u 38.5 2.5E+02 0.0054 24.7 8.6 24 138-161 38-61 (106)
476 PF05103 DivIVA: DivIVA protei 38.3 17 0.00038 31.8 1.4 35 180-214 35-69 (131)
477 KOG0972 Huntingtin interacting 37.6 5.4E+02 0.012 27.5 12.0 96 177-279 230-326 (384)
478 PF07798 DUF1640: Protein of u 37.5 3.6E+02 0.0078 25.5 17.9 44 111-154 49-92 (177)
479 PF03961 DUF342: Protein of un 37.3 2.2E+02 0.0048 30.7 9.7 8 116-123 337-344 (451)
480 PF07989 Microtub_assoc: Micro 37.3 1.9E+02 0.0042 24.2 7.3 53 240-292 7-67 (75)
481 PRK13729 conjugal transfer pil 37.2 1.1E+02 0.0023 34.1 7.4 8 459-466 327-334 (475)
482 PRK10803 tol-pal system protei 37.2 1.8E+02 0.0039 29.4 8.5 46 236-281 57-102 (263)
483 COG4487 Uncharacterized protei 37.0 6.3E+02 0.014 28.1 26.0 74 68-141 18-92 (438)
484 PF13094 CENP-Q: CENP-Q, a CEN 36.7 1.9E+02 0.0042 26.6 8.1 54 237-290 31-84 (160)
485 KOG4807 F-actin binding protei 36.4 6.4E+02 0.014 28.0 19.8 163 109-283 294-478 (593)
486 PF03961 DUF342: Protein of un 36.4 2.3E+02 0.005 30.5 9.7 17 266-282 387-403 (451)
487 KOG0998 Synaptic vesicle prote 36.4 72 0.0016 37.6 6.3 134 173-325 438-571 (847)
488 PRK11020 hypothetical protein; 36.4 1.7E+02 0.0038 26.9 7.3 61 111-174 3-63 (118)
489 PF15294 Leu_zip: Leucine zipp 36.1 5.3E+02 0.011 27.0 25.3 231 91-330 4-276 (278)
490 PF10267 Tmemb_cc2: Predicted 36.0 6.1E+02 0.013 27.7 15.4 115 137-260 214-329 (395)
491 PF08172 CASP_C: CASP C termin 35.9 4.4E+02 0.0096 26.7 11.0 86 186-271 1-131 (248)
492 KOG4098 Molecular chaperone Pr 35.9 3.2E+02 0.007 25.8 9.1 74 195-271 19-117 (140)
493 PF14988 DUF4515: Domain of un 35.7 4.4E+02 0.0096 26.0 23.7 165 111-290 23-199 (206)
494 PF04880 NUDE_C: NUDE protein, 35.2 56 0.0012 31.5 4.3 54 137-202 2-55 (166)
495 PF01442 Apolipoprotein: Apoli 35.2 3.3E+02 0.0071 24.3 24.2 196 109-307 1-202 (202)
496 PF05008 V-SNARE: Vesicle tran 35.2 2.4E+02 0.0052 22.7 7.9 79 111-195 1-79 (79)
497 TIGR03495 phage_LysB phage lys 35.2 3.8E+02 0.0083 25.1 10.5 76 137-212 21-96 (135)
498 PF11172 DUF2959: Protein of u 35.1 4.7E+02 0.01 26.1 19.0 158 155-316 24-200 (201)
499 PF09766 FimP: Fms-interacting 35.0 5.7E+02 0.012 27.1 13.7 129 97-226 3-143 (355)
500 KOG1937 Uncharacterized conser 34.8 7.1E+02 0.015 28.0 24.0 198 109-327 321-518 (521)
No 1
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1e-13 Score=154.29 Aligned_cols=181 Identities=21% Similarity=0.272 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
-+..+.+|..++.++..+|..+..++ .|++++....+++.++++++|++|++++....|.+......+..|...|....
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ek-eq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~ 341 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLREEK-EQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKK 341 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 257 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L------------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe 257 (476)
.||+.++|+|..|.+++..++.+++.++.+++.| +.|||.|++.|| .++.-|...+.....|+.++.
T Consensus 342 ~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 342 DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999988 899999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 258 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 258 ~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
.++..+....++++.+...+.+...++..+..++.
T Consensus 422 ~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~ 456 (1200)
T KOG0964|consen 422 DLESELKEKLEEIKELESSINETKGRMEEFDAENT 456 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999987764
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=3.2e-05 Score=88.02 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.0
Q ss_pred CCceeeccCCCc
Q 011839 411 SGEIVQIPLDDK 422 (476)
Q Consensus 411 ~~eiv~~~ld~~ 422 (476)
.|.+--||||.+
T Consensus 572 ~gr~tflpl~~~ 583 (1164)
T TIGR02169 572 AGRATFLPLNKM 583 (1164)
T ss_pred CCCeeeccHhhc
Confidence 677888898744
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.73 E-value=4.2e-05 Score=89.53 Aligned_cols=169 Identities=25% Similarity=0.313 Sum_probs=107.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHH
Q 011839 171 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT 250 (476)
Q Consensus 171 kea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~ 250 (476)
+-..+++.|..++..+.....++..+......+......+..++..+..++..|..++..|...-..+...|..+...+.
T Consensus 759 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~ 838 (1163)
T COG1196 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333334444444444445555555555556556666666667766665566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 330 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL 330 (476)
.+..++..+...+..+...+..+..++..++..+..+...+... ..+.++++.++..+.+-+.++-.+.+.+.++.+.|
T Consensus 839 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL-EEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666433 23666888899999999999999999999999888
Q ss_pred hhhhhhhhhh
Q 011839 331 SVKLDRQSVA 340 (476)
Q Consensus 331 ~~~l~~~~~~ 340 (476)
+.++......
T Consensus 918 ~~~~~~~~~~ 927 (1163)
T COG1196 918 EAKLERLEVE 927 (1163)
T ss_pred HHHHHHHHHH
Confidence 7766555433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.70 E-value=3.7e-05 Score=87.01 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=8.7
Q ss_pred CCceeeccCCCcc
Q 011839 411 SGEIVQIPLDDKE 423 (476)
Q Consensus 411 ~~eiv~~~ld~~~ 423 (476)
.|-+.++|||...
T Consensus 570 ~g~~~~l~l~~i~ 582 (1179)
T TIGR02168 570 LGRVTFLPLDSIK 582 (1179)
T ss_pred CCcEEEeeccccc
Confidence 5666678877654
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.64 E-value=0.00048 Score=75.31 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=34.9
Q ss_pred ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011839 298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 337 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~ 337 (476)
+..+|++.+.-|+--=++|..|+++|++-+-.|-.+|+.-
T Consensus 418 el~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 418 ELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667888888899999999999999999999998877665
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.63 E-value=0.00015 Score=82.10 Aligned_cols=23 Identities=13% Similarity=-0.156 Sum_probs=13.2
Q ss_pred CccCCCCCcCCCchhHHHHHHhh
Q 011839 441 AVPLTDAPLIGAPFRLVSFVAKY 463 (476)
Q Consensus 441 ~vp~~dapligapfrlisfva~y 463 (476)
.+.|.|=|.-|-..+-+-.|+.|
T Consensus 1113 ~~~~lDE~~~~ld~~~~~~~~~~ 1135 (1179)
T TIGR02168 1113 PFCILDEVDAPLDDANVERFANL 1135 (1179)
T ss_pred CeEEecCccccccHHHHHHHHHH
Confidence 45667777777665444444433
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.54 E-value=3.9e-05 Score=89.83 Aligned_cols=273 Identities=17% Similarity=0.201 Sum_probs=134.3
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 011839 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--- 224 (476)
Q Consensus 148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--- 224 (476)
....+.++..|..++........+...++.++..++..+.....++......+..+......+......++..+..+
T Consensus 294 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~ 373 (1163)
T COG1196 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33566777777777777777777777777777777777777777766665555555555555555555555555522
Q ss_pred -------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011839 225 -------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT 296 (476)
Q Consensus 225 -------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~ 296 (476)
..++..|+..++ .....+..++.++.++......+......+..++..+..++..+..++..+...+....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 452 (1163)
T COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE- 452 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-
Confidence 223333444444 44455555555555555555555555555555555555555554444454444443221
Q ss_pred cccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccccc---cccccccccCCCCCCCCcccccccc
Q 011839 297 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG---SDAVTALTSDTEPMSESSDNMSSLN 373 (476)
Q Consensus 297 ~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~~~~~~~ss~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (476)
...+.+..++..+..-+..+...-..+...++++...++-.......+..+. ....+.++|+++|+.+- ..+-.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~l---i~v~~ 529 (1163)
T COG1196 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAEL---IKVKE 529 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHh---cCcCh
Confidence 1333444444455555555555555555555555554443333221100000 00011144444444332 11111
Q ss_pred ccccccccccccccCCCccCCCCCCCccccCCcccccCCceeeccCCCccch
Q 011839 374 NRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQ 425 (476)
Q Consensus 374 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiv~~~ld~~~~~ 425 (476)
+-++-..+...+..+.+|--+...+.....|=.-...|-..+|||+.+.-.
T Consensus 530 -~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~ 580 (1163)
T COG1196 530 -KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL 580 (1163)
T ss_pred -HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccc
Confidence 222222222233333333222222222223333335888999999987633
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.52 E-value=0.0004 Score=69.32 Aligned_cols=217 Identities=21% Similarity=0.271 Sum_probs=150.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 011839 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQ-------QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 180 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIk-------QLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk 180 (476)
..+++..|..|+..|+.+... .+.++-.+. +++..+.........++..|..|+...+.....+..|+.+|.
T Consensus 49 ~~~ye~el~~lr~~id~~~~e-ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKE-KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHH-hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 556788888888888877766 333333334 444444455667778888999999999999999999999999
Q ss_pred HHHHHHH----HHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHhH----HHHHHHHHHhhhhHhhhhh-chHHHHhhh
Q 011839 181 NLQSEKE----FWLQKEAALEQKIS-QLRDE-----SAALNMKRASL----EERLKLLEADKDSWTQMES-VSKETIAGL 245 (476)
Q Consensus 181 qLe~EIs----~~~qEla~Lepeie-kL~~E-----easLkQKLasL----EeKL~~LKaERD~WLkkEI-sLke~IssL 245 (476)
.|+.++. .|.+++..|..++. ...-+ ...|...+..+ +......+.+=+.|.+..+ .+.......
T Consensus 128 ~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~ 207 (312)
T PF00038_consen 128 SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKS 207 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccc
Confidence 9999888 45566676666663 11111 12223333332 3333333677788888888 888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---hcccchhhhHHHHHHhHHHHHHHHHHH
Q 011839 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQIEAAGALIDKLITENIE 322 (476)
Q Consensus 246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~---~~~~e~~~~qie~a~~~v~kl~~en~~ 322 (476)
...+..++.++..+...+..+..++..|+.....|..++..++....... ......+..++..+..-+..++.+..+
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888876664321 124556777777778888888888888
Q ss_pred HHH
Q 011839 323 LVE 325 (476)
Q Consensus 323 l~e 325 (476)
|+.
T Consensus 288 Ll~ 290 (312)
T PF00038_consen 288 LLD 290 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 9
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.22 E-value=0.00064 Score=77.33 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
+|++.=+..++++.|.++-.|++-+-+..-....+..+...+..+..-|....-...--+.+.+.|+.+...++.++.++
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777666666666666667777777777666666666777788888888888888888
Q ss_pred HHHHHHHHHhh
Q 011839 218 EERLKLLEADK 228 (476)
Q Consensus 218 EeKL~~LKaER 228 (476)
+-.+..|++|-
T Consensus 345 etdlEILKaEm 355 (1243)
T KOG0971|consen 345 ETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHH
Confidence 88888885543
No 10
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.17 E-value=0.0023 Score=71.15 Aligned_cols=234 Identities=21% Similarity=0.258 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHH
Q 011839 77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE--------KVQATLEETIQQLQRQNDLRM 148 (476)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkq--------kLE~llqEkIkQLq~E~~d~l 148 (476)
|+.+|=||-+ -+.+.+..|++|++-.+..---||..|.+|+.++..-.. ..+..+++.+++|+.+++.+.
T Consensus 23 e~a~~qqr~~--qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 23 ESAQWQQRMQ--QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766 778888889999998887777777777777766653221 223334444555555555554
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839 149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW---LQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (476)
Q Consensus 149 Qk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~---~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK 225 (476)
.+....-..-..|..-+....++-..++.++..++...... +..+..=+.-+......|..|+++|.+++.....|-
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33222111111221111222233333444444444443322 222333344567778889999999999999888886
Q ss_pred Hhhhh---HhhhhhchHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccch
Q 011839 226 ADKDS---WTQMESVSKETIA-GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD 301 (476)
Q Consensus 226 aERD~---WLkkEIsLke~Is-sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~ 301 (476)
.++-. -|+.| ..+. .+...+..|+.++..++..+...+.+.+.|..+-+.+...++.-...+ +..+++.+.
T Consensus 181 ne~~elt~~lq~E----q~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~-q~l~~e~e~ 255 (617)
T PF15070_consen 181 NENMELTSALQSE----QHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY-QQLASEKEE 255 (617)
T ss_pred HhhhHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 66533 22333 2222 344444455555555555555555555555555554444444332211 223344555
Q ss_pred hhhHHHHHHhHHHHHH
Q 011839 302 FSTQIEAAGALIDKLI 317 (476)
Q Consensus 302 ~~~qie~a~~~v~kl~ 317 (476)
|..|+-.-+-+++.|-
T Consensus 256 L~~q~l~Qtql~d~lq 271 (617)
T PF15070_consen 256 LHKQLLQQTQLMDRLQ 271 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.15 E-value=0.0051 Score=75.48 Aligned_cols=200 Identities=22% Similarity=0.243 Sum_probs=100.2
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (476)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~ 169 (476)
++.-++.+..+.+-.-.+...++..-+.++.++..++..++..-... ..++.+......++-.+++.|..+++.+....
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~-~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTL-QKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666665666666677777777777766666655433333 55666666666666666666666666666666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHhhhhHhhhhh-chHHH
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA-------SLEERLKLLEADKDSWTQMES-VSKET 241 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa-------sLEeKL~~LKaERD~WLkkEI-sLke~ 241 (476)
..+..+++.+.+|...+.....+...+.....+|......+...+. .++...+.|-.+= .-++..+ .++..
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-KDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 6666666666666666664444433333333332222222222221 2222222221111 1122233 34444
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+..+...+.....++..+...+......+.++...|.+|+.++..|.++.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444445555555555555544444
No 12
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.12 E-value=0.002 Score=71.65 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=136.1
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH-
Q 011839 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH- 168 (476)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~- 168 (476)
+.|+|++|+-|.|-. ..+|+.+...+.+++.- +.+.+..|..+.+..+..+-.+|-.|.+|+.....-
T Consensus 2 l~e~l~qlq~Erd~y----------a~~lk~e~a~~qqr~~q-mseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 2 LMESLKQLQAERDQY----------AQQLKEESAQWQQRMQQ-MSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 468899999998873 33455555555555433 333336677777777788888888888888765432
Q ss_pred --------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh-
Q 011839 169 --------IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES- 236 (476)
Q Consensus 169 --------~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI- 236 (476)
...+..|++++..|+.++..+..++.......+.|...+...+.+|..+|..++.+ ..++..+| ..+
T Consensus 71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLL-e~lq 149 (617)
T PF15070_consen 71 PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLL-EQLQ 149 (617)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence 23345688888999999998888887777777888877888888999999999988 44566544 356
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhhhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN--------------RQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEI--------------q~LkeqIseLqs~lqeLeeei~ 292 (476)
+=+..|++.-..+..|..++..|+...-.+..++ ..|..++..++..+.+++..+.
T Consensus 150 sdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le 219 (617)
T PF15070_consen 150 SDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLE 219 (617)
T ss_pred ccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888888666666555 3556666666777777766653
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.10 E-value=0.0048 Score=67.67 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=39.2
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHH
Q 011839 98 RNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM 177 (476)
Q Consensus 98 ~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEe 177 (476)
..|+.-..+.-..|++.+.+|+.++..+...|.....+- .+|+.....+......+......|...+....++-..|++
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~-e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEM-EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666666666654433333 5555555544444444444444444433333333333333
Q ss_pred HHH
Q 011839 178 NIA 180 (476)
Q Consensus 178 qIk 180 (476)
.|.
T Consensus 228 di~ 230 (546)
T PF07888_consen 228 DIK 230 (546)
T ss_pred HHH
Confidence 333
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.06 E-value=0.0048 Score=60.52 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH
Q 011839 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 182 (476)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL 182 (476)
.|..|+.+++.....+.. +...++........+-..++.+.-+|..|...++...++-.....+|..+
T Consensus 2 K~~~l~~eld~~~~~~~~-~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~ 69 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEE-AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEA 69 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555444333 22222444444444444444444444444444444444333333333333
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=98.05 E-value=0.005 Score=69.69 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkL 129 (476)
++..+..++.++..+...+
T Consensus 204 l~~~l~~~~~~l~el~~~i 222 (880)
T PRK02224 204 LHERLNGLESELAELDEEI 222 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444443
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.04 E-value=0.0079 Score=60.15 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHhHHHHHH
Q 011839 86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET------IQQLQRQNDLRMQKEATLEETIK 159 (476)
Q Consensus 86 ~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEk------IkQLq~E~~d~lQk~A~LE~tIK 159 (476)
.|.+++.+|+.|+...|.....-+-++-.+..|..++..++.+++.....+ |..+..+.+........++..|.
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 477899999999999999888889999999999999999988877655444 44445556666667777888888
Q ss_pred HHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011839 160 QLRNQNDLHIQREGGLEMNIANLQSEK 186 (476)
Q Consensus 160 dLks~~es~~Qkea~LEeqIkqLe~EI 186 (476)
.|+.++.... ..+++.|..|+..+
T Consensus 128 ~L~eEl~fl~---~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 128 SLKEELEFLK---QNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHH---HHHHHHHHTTSTT-
T ss_pred HHHHHHHHHH---hhhhhhhhhhhhcc
Confidence 8877665422 22444455554433
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.03 E-value=0.0092 Score=72.66 Aligned_cols=241 Identities=21% Similarity=0.289 Sum_probs=120.6
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~ 168 (476)
-++--|-+|++.-+.....-..++..+..|..++.....+ ...+.-.|.-+......+.+....++..-+.|...++..
T Consensus 56 ~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~-~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~ 134 (1822)
T KOG4674|consen 56 ELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE-RSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQ 134 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544444 222223333333444444444444443333333333333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHH
Q 011839 169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSV 247 (476)
Q Consensus 169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~ 247 (476)
..+-..+...++.|...+.+.-+.+..+..........-..+.-++..++.+...|+.+ ..||..+. ...+.+..+..
T Consensus 135 ~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~-~~wL~~eL~~~~ekll~~~r 213 (1822)
T KOG4674|consen 135 KAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESE-NKWLSRELSKVNEKLLSLRR 213 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444444444444444444444444444444444444444444332 46777777 66666666666
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hhcccchhhhHHHHHHhHHHHHHHHH
Q 011839 248 D----ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---ATSEQKDFSTQIEAAGALIDKLITEN 320 (476)
Q Consensus 248 ~----i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~---~~~~~e~~~~qie~a~~~v~kl~~en 320 (476)
+ +..|..++..+..+...+...++.|+.+...|...|+.+-.+++.+ ..+..+.|.-.+.+.|.|++=+-..=
T Consensus 214 e~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ 293 (1822)
T KOG4674|consen 214 EHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKL 293 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 6666666666666777777777777777766666666666555433 22344445555555555555444433
Q ss_pred HHHHHhhhhhh
Q 011839 321 IELVEKVNDLS 331 (476)
Q Consensus 321 ~~l~ekvneL~ 331 (476)
-++..+|++|.
T Consensus 294 ee~~~~~~el~ 304 (1822)
T KOG4674|consen 294 EELSHEVAELQ 304 (1822)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.02 E-value=0.011 Score=72.70 Aligned_cols=134 Identities=20% Similarity=0.233 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
+.........+|..++++..+++....+...++.+.+.++.++......+..++..+.++..+......++..++..+..
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666777777776666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 224 LEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 224 LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
+..--+. |.+|- .+++.+..+..++.....++..|...+.-++..++.+...+.
T Consensus 976 ~~e~~~k-L~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 976 LDENISK-LSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4222222 22222 344444444444444444444444444444444444444444
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.02 E-value=0.0032 Score=67.37 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 199 KISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~W--LkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
++..|.+....+..++..++..+..++...+.+ +...+ .++..+...+..+.++..+...++.++..|......+..
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 344444455555555555555555332222211 22333 444444444444444444444444444444443333333
Q ss_pred HHHHHHHhhhhhh
Q 011839 276 NVSSLRSQLSSDE 288 (476)
Q Consensus 276 qIseLqs~lqeLe 288 (476)
.+..+..++.++.
T Consensus 380 ~l~~l~~~l~~~~ 392 (562)
T PHA02562 380 ELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.01 E-value=0.0049 Score=71.60 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
+.........-++.+++|..|..+..+......+=..+-+.+..+..++.....+.......|.+++.....++..++.+
T Consensus 305 ~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~ 384 (1074)
T KOG0250|consen 305 EEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL 384 (1074)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444333333333333333333444444444444444444444444444444444444
Q ss_pred HHHH-HHH------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 218 EERL-KLL------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 218 EeKL-~~L------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
++.. +.+ -+.+-.||++|+ .++..+.+|......+..++..-++++..+...|.+++.++..-...+..|+
T Consensus 385 ~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 385 EKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 222 122223444444 4444444444444444444444444444444444444444444443333333
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=97.96 E-value=0.01 Score=67.17 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV 257 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe 257 (476)
..+|...+..+...+..+..++..+......+...+..++..+..|+.+++. +.+++ .+...+..+...+..+..++.
T Consensus 316 ~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~~l~~l~~el~ 394 (880)
T PRK02224 316 REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRREEIEELEEEIE 394 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555554555555666666666666554443 44454 666666666666666666665
Q ss_pred HHHHHH
Q 011839 258 ELEESR 263 (476)
Q Consensus 258 ~Leee~ 263 (476)
.+...+
T Consensus 395 el~~~l 400 (880)
T PRK02224 395 ELRERF 400 (880)
T ss_pred HHHHHH
Confidence 554433
No 22
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.96 E-value=0.006 Score=70.90 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH---Hhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ---REGG--------LEMNIANLQSEKEFWLQKEAALEQKISQL 203 (476)
Q Consensus 135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Q---kea~--------LEeqIkqLe~EIs~~~qEla~LepeiekL 203 (476)
+.|.+...+.....++...+++.+..+......+.+ -++. -..+++.+...|.....+.+++..+++..
T Consensus 228 ~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~ 307 (1074)
T KOG0250|consen 228 ELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEK 307 (1074)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666654443333322 2222 34566777777778888889999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 204 RDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 204 ~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
......+.+++.+.|+++..+..+=+. -.+.|.+..+....++.++..++..+......++.++..++.+..+
T Consensus 308 ~~k~~~~r~k~teiea~i~~~~~e~~~-------~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 308 QGKIEEARQKLTEIEAKIGELKDEVDA-------QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654443 3347777777778888888888888888888888888888888888
Q ss_pred hhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 011839 284 LSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVN 328 (476)
Q Consensus 284 lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvn 328 (476)
|..++...-....++.+.+...++....-|+++-..+..|.++-|
T Consensus 381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887774443443333333333334444444444444444333
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.0065 Score=66.69 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc---ccchhhhHHHHHHhHHHHH
Q 011839 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS---EQKDFSTQIEAAGALIDKL 316 (476)
Q Consensus 240 e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~---~~e~~~~qie~a~~~v~kl 316 (476)
+.+..+...+..|+.++..|+..-..|...|+.|+-+++ .-...+-.+.+. +-..|+.+..++-.-+++|
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~-------e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD-------EDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh-------hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555544444 221111111110 3335555555555555555
Q ss_pred HHHHHHHH
Q 011839 317 ITENIELV 324 (476)
Q Consensus 317 ~~en~~l~ 324 (476)
+-=++.|-
T Consensus 369 lD~ki~Ld 376 (546)
T KOG0977|consen 369 LDTKISLD 376 (546)
T ss_pred hchHhHHH
Confidence 55444444
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.93 E-value=0.01 Score=67.04 Aligned_cols=35 Identities=29% Similarity=0.202 Sum_probs=28.0
Q ss_pred ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839 298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 332 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~ 332 (476)
-.-+-+.|+|.+...+.+.=.|=.+|+-|+.+|-+
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566789999999998888877788888888844
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.90 E-value=0.01 Score=58.29 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=2.1
Q ss_pred HHHHHH
Q 011839 256 VVELEE 261 (476)
Q Consensus 256 Ve~Lee 261 (476)
+...+.
T Consensus 185 lkeaE~ 190 (237)
T PF00261_consen 185 LKEAEN 190 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.017 Score=70.51 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=25.4
Q ss_pred ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839 298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~ 336 (476)
..+....+|+.+.....++++.+..+-...+.|.+++..
T Consensus 838 ~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 838 QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777776666555555554433
No 27
>PRK11637 AmiB activator; Provisional
Probab=97.86 E-value=0.011 Score=62.34 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkL 129 (476)
++.+++++.+|..+..++
T Consensus 46 ~~~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSV 63 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.029 Score=67.04 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=13.3
Q ss_pred ccCccCCCCCcCCCchhHH
Q 011839 439 VAAVPLTDAPLIGAPFRLV 457 (476)
Q Consensus 439 ~~~vp~~dapligapfrli 457 (476)
...|.|.|-|.-|-...-+
T Consensus 1223 ~~~il~lDEPt~~lD~~~~ 1241 (1311)
T TIGR00606 1223 NCGIIALDEPTTNLDRENI 1241 (1311)
T ss_pred CCCEEEeeCCcccCCHHHH
Confidence 4678888888887764433
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=0.024 Score=67.71 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=44.0
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839 149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (476)
Q Consensus 149 Qk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK 225 (476)
+....++-.|+.|......... ...+..|+.++.....++..+..++..+..+...+..++..|+.++..+.
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~-----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDL-----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHhccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333222 12566777777777777777777777777777777777777766666663
No 30
>PRK11637 AmiB activator; Provisional
Probab=97.80 E-value=0.016 Score=61.24 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 117 QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (476)
Q Consensus 117 qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q 191 (476)
.++++++.+.++++.+..+. .+++.+.....+.+..++..|..+...+....+.-..++.+|..++.+|.....
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i-~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSV-RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543322222 444444444444444444444444444333333333333333333333333333
No 31
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.75 E-value=0.014 Score=56.70 Aligned_cols=173 Identities=21% Similarity=0.239 Sum_probs=101.5
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (476)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk 171 (476)
--=++|..|+-..-+.=.++++.-.+|.++|..+...+..+. ..++.--.++..+.+|+....+....
T Consensus 15 ~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q------------qal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 15 LNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ------------QALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666656666666666777777777776654421 34455556677777777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHH
Q 011839 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDIT 250 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~ 250 (476)
...|..+-++++.+... |..+|..|.+++..+......+..+...|..++.. |+..+ .-+.-+......+.
T Consensus 83 ~~~L~aq~rqlEkE~q~-------L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~-Lq~Ql~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQS-------LVAEIETLQEENGKLLAERDGLKKRSKELATEKAT-LQRQLCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766665 44455555566655555555665555555554433 34444 44444445544555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
.-..++..|..-+..+..-++.|+-.++.|..++
T Consensus 155 e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 155 ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555554444
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.74 E-value=0.021 Score=61.19 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.2
Q ss_pred CccCCCCCc
Q 011839 441 AVPLTDAPL 449 (476)
Q Consensus 441 ~vp~~dapl 449 (476)
.+.|.|-|.
T Consensus 498 ~~lilDEp~ 506 (562)
T PHA02562 498 NLLILDEVF 506 (562)
T ss_pred CeEEEeccc
Confidence 344445554
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.1 Score=60.82 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839 113 GTVQQLQNECDLYKEKVQATLEET-----IQQLQRQNDLRMQKEATLEETIKQLRNQN 165 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEk-----IkQLq~E~~d~lQk~A~LE~tIKdLks~~ 165 (476)
..+.+|..+++...++|- +.+.+ ..++.+++..+...+-+++..|++.....
T Consensus 708 ~kf~~l~~ql~l~~~~l~-l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~ 764 (1174)
T KOG0933|consen 708 QKFRDLKQQLELKLHELA-LLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERAL 764 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555432 12222 12344444444444444444444444433
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.023 Score=66.67 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
.++.-+-+....-+.|.-...-+++.+.+|+..+..+...++ .+..+...+.-.++.++-.|++++..
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~--------~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLE--------KLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444544445566677777777776666543 34444444555566666666666554
No 35
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.62 E-value=0.091 Score=61.15 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhh
Q 011839 196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGL 245 (476)
Q Consensus 196 LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL 245 (476)
|.-+++.|.+....+.+.++.++..-..|+-|++.++ .|+ .......+.
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~-~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL-EETSTVTRSLSRQ 462 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 7778888888888888888888888888888888854 344 544444443
No 36
>PRK09039 hypothetical protein; Validated
Probab=97.60 E-value=0.0052 Score=63.72 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=66.7
Q ss_pred HHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhc
Q 011839 158 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV 237 (476)
Q Consensus 158 IKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIs 237 (476)
|.+|-+-+....+....++.+|..|+..+.......+.++..|..+......+..++..++.++..++.... .
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s-------e 134 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA-------R 134 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH-------H
Confidence 344555555555555555555555555555555555555555554433334444455555444443332111 3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
....|..|+.+|..|+.|+..|+..+...+......+.+|..+..+|...
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666655555444
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.60 E-value=0.075 Score=61.30 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=76.8
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH
Q 011839 103 SHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL 182 (476)
Q Consensus 103 ~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL 182 (476)
|-||-|.+- +.-.++-..+..+.+.|...-++. +++++-.+.+.+..+.....|.=+-=..++...+-..|+..+..+
T Consensus 260 mkiqleqlq-EfkSkim~qqa~Lqrel~raR~e~-keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~l 337 (1243)
T KOG0971|consen 260 MKIQLEQLQ-EFKSKIMEQQADLQRELKRARKEA-KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEAL 337 (1243)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666543 333444455555555555555555 556555555555555444444433333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhH
Q 011839 183 QSEKEFWLQKEAALEQK---------------ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLS 246 (476)
Q Consensus 183 e~EIs~~~qEla~Lepe---------------iekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~ 246 (476)
+..++...-.+.-|+.+ +.+|...|.-|+..+..| +.|-+ --+..+ .+.+.+..++
T Consensus 338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL----RDlsA----~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL----RDLSA----SEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH----Hhcch----HHHHHHHHHHHHHHHHh
Confidence 33333333333333332 333444444444333322 22200 001222 3444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 247 VDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
.++..|...-+.|+.+++..+..|..|+++|+
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666655
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.53 E-value=0.17 Score=57.92 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Q 011839 77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQAT----LEETIQQLQRQNDLRMQKEA 152 (476)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~l----lqEkIkQLq~E~~d~lQk~A 152 (476)
|..|++|-.| ++++|+.+.|+--|...-..-.-.|..++.++++++.+++..-.. -+.+ +=|..++-.+...++
T Consensus 256 E~d~~lq~sa-k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqat-kylh~enmkltrqka 333 (1265)
T KOG0976|consen 256 EQDMDLQASA-KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQAT-KYLHLENMKLTRQKA 333 (1265)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHH
Confidence 7899999998 789999999988887766666667778888888888888774333 3344 557778888888888
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+.|.+++-+-..++--.+...|+.+-..+....-+..+++...+.++..|...-+.+.++++.+..++-.|
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~ 405 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRL 405 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 888888887777666666666666655555555555555556666666666666666666666555555444
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.49 E-value=0.12 Score=61.48 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHhhhhHhhhhh---ch-HHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 225 EADKDSWTQMES---VS-KETIAGLSVDITQLRMQVVELEES 262 (476)
Q Consensus 225 KaERD~WLkkEI---sL-ke~IssL~~~i~sLq~QVe~Leee 262 (476)
..+-+.|.+.|+ .. ...|..++..+..|..++...+..
T Consensus 752 ~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 752 LKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555554 11 235566666666666666655553
No 40
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.48 E-value=0.098 Score=58.21 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=54.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839 105 IQKEATLEGTVQQLQNECDLYKEKVQATLE---------------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (476)
Q Consensus 105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llq---------------EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~ 169 (476)
++-.-..+-.|+.|.+.++.+.+.+..... ++-..|.++....-.+.-.++.+|..|+..+..+.
T Consensus 137 l~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~ 216 (629)
T KOG0963|consen 137 LADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQ 216 (629)
T ss_pred HhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444445555666666666666555544433 22222333333333344444445555544444443
Q ss_pred HHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 170 QREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 170 Qkea~LEeq----IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
-....+... ..-...++.....+++.-...+..|..+..+|..+++..
T Consensus 217 ~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 217 NELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333 444444555555555555555555555555555555533
No 41
>PRK03918 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.22 Score=56.43 Aligned_cols=6 Identities=17% Similarity=0.601 Sum_probs=2.8
Q ss_pred HHHHHH
Q 011839 77 ERQHLL 82 (476)
Q Consensus 77 ~~~~~~ 82 (476)
+|..+|
T Consensus 146 ~r~~~~ 151 (880)
T PRK03918 146 SREKVV 151 (880)
T ss_pred HHHHHH
Confidence 454444
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.47 E-value=0.12 Score=59.37 Aligned_cols=35 Identities=31% Similarity=0.230 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
.|+..|+.+..+.+.++.-+..|.++...|...+.
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35555666666666665555555555555555444
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.46 E-value=0.036 Score=61.08 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=13.9
Q ss_pred HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 011839 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLY 125 (476)
Q Consensus 94 i~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~l 125 (476)
|..|..-.-.-|-|=--||..=+.|+..|+.+
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443344554444444444444444443
No 44
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.45 E-value=0.19 Score=51.89 Aligned_cols=87 Identities=17% Similarity=0.321 Sum_probs=59.5
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMNI----ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL- 224 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqI----kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L- 224 (476)
....+|..|.-++..+-++.+.-..-+..- -.++++-+.|..=-..|.-.+..|.+.+..|.|+|...+.+.+.|
T Consensus 85 ~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe 164 (305)
T PF14915_consen 85 NKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLE 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554433322222 234666678888888889999999999999999999999999988
Q ss_pred ---HHhhhhHhhhhh
Q 011839 225 ---EADKDSWTQMES 236 (476)
Q Consensus 225 ---KaERD~WLkkEI 236 (476)
..-||.+--+-+
T Consensus 165 ~elh~trdaLrEKtL 179 (305)
T PF14915_consen 165 IELHHTRDALREKTL 179 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777544443
No 45
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.44 E-value=0.03 Score=56.01 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011839 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 193 (476)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEl 193 (476)
.|+.|+.+++.+.+... ...+.++.++.+.+.+.+....++..+.+|+.+.......-..+.++++..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~-~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~----- 84 (239)
T COG1579 11 AIQKLDLEKDRLEPRIK-EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA----- 84 (239)
T ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 45567777777777644 556666777777777777777788877777776655555555555555555544431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (476)
Q Consensus 194 a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~ 272 (476)
.+-..+|..|.-+...++.+.++++.++..|..++.. +..+| .++..+..+ ...+ ......++.++..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~-l~~~i~~l~~~~~~~-------e~~~---~e~~~~~e~e~~~ 153 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEK-LEKEIEDLKERLERL-------EKNL---AEAEARLEEEVAE 153 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHH
Confidence 2223344555555555555555555555544333322 11222 222232222 2222 2222334445555
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 011839 273 LKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 273 LkeqIseLqs~lqeLeeei~ 292 (476)
.++..-.+.+.+..|.+..-
T Consensus 154 i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 154 IREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 55555555555555555554
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.40 E-value=0.036 Score=55.41 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
..++.+.+.+.-........++.++..++...-.-..++.++..|+..+ .++..+...+..++...
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv--------------~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQV--------------SQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666655554444433333333333333333 33344444444444444
Q ss_pred HHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 218 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 218 EeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+.++. +..+. .|. .|+..+...+..+.+|..++..+..++..+..++..++..+..++..+...+
T Consensus 79 e~kl~---~v~~~---~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 79 EEKLS---AVKDE---RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHh---ccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 22222 233 3333444444444444444444444444444444444444444433333333
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.39 E-value=0.37 Score=56.36 Aligned_cols=144 Identities=18% Similarity=0.316 Sum_probs=70.0
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhH-------
Q 011839 61 DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATL------- 133 (476)
Q Consensus 61 ~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~ll------- 133 (476)
+|--+.|+-.+|..+-+..+ ...+|.+++-||.|+.|.+--.-.=--++.++.+|+.+|..+.+..+-.+
T Consensus 156 s~~~~~~sp~~~~~~~~~hL---~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~ 232 (1195)
T KOG4643|consen 156 SGKELYKSPYDIVVKKNLHL---EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRAD 232 (1195)
T ss_pred cCCCCCCCcchhhcchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455445544433222 34467888888888877665432222234445555555555544443333
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 011839 134 ------------------------------EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (476)
Q Consensus 134 ------------------------------qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe 183 (476)
.+++..|+.++.-++-...-|++.|..|+.+.+. +.++.+|=+|+
T Consensus 233 ~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlk 307 (1195)
T KOG4643|consen 233 RYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLK 307 (1195)
T ss_pred hhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHH
Confidence 3333444444444444445555555555544322 33444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 184 SEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 184 ~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
..++....+.....-++++|..++..|.-
T Consensus 308 qkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 308 QKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555554443
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.35 Score=56.64 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=84.0
Q ss_pred hhhhhhhhhhhHhhHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839 97 LRNERESHIQKEATLEGTVQ-----QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (476)
Q Consensus 97 l~~e~d~~~~~e~~~Ek~Ik-----qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk 171 (476)
|+++.++...+=+++++.+. ++.+.+..+...++.. +..|+..+.-...+..++..+|-.+++-.... ..+
T Consensus 713 l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~-~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~r 788 (1174)
T KOG0933|consen 713 LKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEES-EQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERR 788 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhH
Confidence 44555555555555554432 3334444444443331 12223333333444444444444444433321 112
Q ss_pred hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhh
Q 011839 172 EGGLEMNIANLQSEKE-------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 244 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs-------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~Iss 244 (476)
...++..|+.++..++ .+.++...|.-+.+.+..+-..+++.+..++..+..|+.+-+. +...|..
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~-------l~~kv~~ 861 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN-------LEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh
Confidence 2223333333333333 2333334444444444444444444444444444444333222 2223333
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHH
Q 011839 245 LSVDITQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI 317 (476)
Q Consensus 245 L~~~i~sLq~QVe~Lee-------e~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~ 317 (476)
...+...++.+++.+.. ++.++..+.+......+.....++.|++++. .|.+....+...|++|.
T Consensus 862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~--------~~~~e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT--------KLESEKANARKEVEKLL 933 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH--------HhhhhHHHHHHHHHHHH
Confidence 33333333333333333 3333333334444444444445555555543 22333344445555555
Q ss_pred HHHHHH
Q 011839 318 TENIEL 323 (476)
Q Consensus 318 ~en~~l 323 (476)
.++.-+
T Consensus 934 ~k~~wi 939 (1174)
T KOG0933|consen 934 KKHEWI 939 (1174)
T ss_pred Hhccch
Confidence 555443
No 49
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.39 E-value=0.25 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQAT 132 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~l 132 (476)
.-+|+.|+.|+++|..+...+...
T Consensus 241 ~~lEr~l~~le~Ei~~L~~~~~~~ 264 (775)
T PF10174_consen 241 ASLERMLRDLEDEIYRLRSRGELS 264 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 456677777777777776654433
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.051 Score=61.96 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=66.4
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh----------HHH
Q 011839 100 ERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND----------LHI 169 (476)
Q Consensus 100 e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e----------s~~ 169 (476)
+.|..+|+ +...|+.++-++..+++..+.+..+. ++|+.+..+..-..+.+......|+.+++ .-.
T Consensus 654 ~l~~~~~k---yK~lI~~lD~~~e~lkQ~~~~l~~e~-eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~ 729 (970)
T KOG0946|consen 654 ELDDIQQK---YKGLIRELDYQIENLKQMEKELQVEN-EELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGA 729 (970)
T ss_pred HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHH
Confidence 34444555 78889999999999999988887777 99999998888888888888888888877 222
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKI 200 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~Lepei 200 (476)
+.-....+.+..+..++.+...+...+..++
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344455555555554444443333333
No 51
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.28 E-value=0.19 Score=48.91 Aligned_cols=125 Identities=21% Similarity=0.193 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 201 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 201 ekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
..+.++...++.-..++|++-+.|.+..-. +-+|. .|-..|..++..+..+..+...+......|..++..|+.++-.
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rq-lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQ-LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444455554444332222 33444 5555666666666666666666666666666666666666644
Q ss_pred HHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 280 LRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 334 (476)
Q Consensus 280 Lqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l 334 (476)
+..-+-.-+..+. +-..+|+.+...|+-...=..+|.-+.+.|--+|
T Consensus 142 ~e~l~~~~da~l~--------e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 142 FESLICQRDAILS--------ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333332222222 2223566666666655555556665666654433
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.28 E-value=0.73 Score=55.12 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=32.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN 165 (476)
Q Consensus 105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~ 165 (476)
.+.-.-.+..++.|..+...++.+++..+.++..+++.....+......+...++.+....
T Consensus 648 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 648 EQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555666666666666666655555555555555555555544444444444433
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.65 Score=55.19 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=49.2
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh------cccchhhhHH
Q 011839 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT------SEQKDFSTQI 306 (476)
Q Consensus 234 kEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~------~~~e~~~~qi 306 (476)
.|+ .+++.+..........+.++...++++.-|...-.+....+..++..+....+...--.+ -+...+...+
T Consensus 479 ~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 479 EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 444 445555555555555555555555555555555555555555555555554433321111 1334444455
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839 307 EAAGALIDKLITENIELVEKVNDLSV 332 (476)
Q Consensus 307 e~a~~~v~kl~~en~~l~ekvneL~~ 332 (476)
..+-.-+.++..+-..|.-.++.|..
T Consensus 559 ~~~~k~l~~~~~e~~~~~~~~~~~rq 584 (1293)
T KOG0996|consen 559 KEKEKELPKLRKEERNLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665555444444433
No 54
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.28 E-value=0.21 Score=59.27 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=23.7
Q ss_pred ccchhhhHHHHHHhHHH-----------HHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839 298 EQKDFSTQIEAAGALID-----------KLITENIELVEKVNDLSVKLDRQSVA 340 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~-----------kl~~en~~l~ekvneL~~~l~~~~~~ 340 (476)
..+.+...|++=|..+. +|.-.+..+...|-.|...|++-.-+
T Consensus 718 k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~ 771 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISK 771 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555443 34444455666777777777765444
No 55
>PRK09039 hypothetical protein; Validated
Probab=97.24 E-value=0.034 Score=57.78 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~ 254 (476)
|.++|..++.+++.+..+++.|-.-+.--......+...+..+.+.+..+++.|+.+-..--........+......+..
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 33444444444444444444443333333444445555555555555555555544222100111112233333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHH-HHHHHHhhhhhhhh
Q 011839 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE-NIELVEKVNDLSVK 333 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~e-n~~l~ekvneL~~~ 333 (476)
++..++...+..-..+..|+.+|..|+.++..|+..+..++... .+.+.+|+....-+++.+.+ ..+|..--++++..
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~-~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~ 202 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD-RESQAKIADLGRRLNVALAQRVQELNRYRSEFFGR 202 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444444444444445555555555555554444333222 56777888888888888865 77777655566544
Q ss_pred h
Q 011839 334 L 334 (476)
Q Consensus 334 l 334 (476)
|
T Consensus 203 l 203 (343)
T PRK09039 203 L 203 (343)
T ss_pred H
Confidence 4
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.20 E-value=0.14 Score=49.60 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011839 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA 152 (476)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A 152 (476)
+.|+.|+++..-.-.++.-.++.+..+..++..+..-|+.+..+. ..|+.++..+.+...
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~-~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV-EELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 356667777777677777777777777777777776666655555 555555555554433
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.19 E-value=0.64 Score=52.64 Aligned_cols=199 Identities=19% Similarity=0.254 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 011839 77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEE 156 (476)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~ 156 (476)
|++.+|-..- .|+-+.-.|+.-..-.+..=.+.++.|..|+..+.....+ +-.....+.+|..++...--+-+.+=.
T Consensus 416 e~qkll~ekk--~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~-eq~yskQVeeLKtELE~EkLKN~ELt~ 492 (786)
T PF05483_consen 416 EKQKLLDEKK--QFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKES-EQHYSKQVEELKTELEQEKLKNTELTV 492 (786)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 4444444455444444455556777888888888777777 444455557777777765556666666
Q ss_pred HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHh
Q 011839 157 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---------EAD 227 (476)
Q Consensus 157 tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---------KaE 227 (476)
....|.-++..-.|......-.++.++..|.........+..+++.|...+..|+-.+.++-.++..- +.+
T Consensus 493 ~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksE 572 (786)
T PF05483_consen 493 NCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSE 572 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 77777777778888888887788888888887777777777888888877777776666555554433 111
Q ss_pred hh-hHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 228 KD-SWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 228 RD-~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
-+ .-+--|+ .....+..+...+..|+.+|+.-...+..|..++..|+.++.
T Consensus 573 en~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 573 ENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11 0111222 334444555555555555555555555555555555554443
No 58
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.16 E-value=0.36 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=10.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhh
Q 011839 307 EAAGALIDKLITENIELVEKVND 329 (476)
Q Consensus 307 e~a~~~v~kl~~en~~l~ekvne 329 (476)
++++..+.+-+.+--...+++-.
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~ 721 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAEN 721 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHH
Confidence 44455554444444444444333
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.16 E-value=0.49 Score=51.80 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH----
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF---- 188 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~---- 188 (476)
..+..++.++..++..+...-.++ -++-.++...-+.+..+..+|...........+.-....-++..++..+..
T Consensus 34 ~eL~~~qeel~~~k~~l~~~E~~k-~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~ 112 (522)
T PF05701_consen 34 TELEKAQEELAKLKEQLEAAEREK-AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASV 112 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchH
Confidence 344556666666666665555555 555555555555555555555555554444444444444455666555553
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 189 -WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 189 -~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
|..++.....+|.....+-...++.|..+...+..+-.+|+.
T Consensus 113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~ 155 (522)
T PF05701_consen 113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNA 155 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555555444444
No 60
>PRK01156 chromosome segregation protein; Provisional
Probab=97.12 E-value=0.79 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=13.4
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHhhhh
Q 011839 75 EAERQHLLQR--------EAMAILEETVKHLRNE 100 (476)
Q Consensus 75 e~~~~~~~q~--------e~~~~~eeti~~l~~e 100 (476)
..+|..||-+ .+|+-+.++++.++.+
T Consensus 148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~e 181 (895)
T PRK01156 148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAE 181 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3466666643 2344445555555544
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.12 E-value=1.2 Score=54.62 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhHh------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 88 AILEETVKHLRNERESHIQKEA------TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQL 161 (476)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~------~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdL 161 (476)
+-++..+++|+.+...-.+.-. .....+..+...+..+...++.. .+.+..++.+...+..+...++..+..|
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~-eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQ-NEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555554322111 12345555555666666554443 3333666666666666666677777777
Q ss_pred HhhhhHHHHHhhhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 162 RNQNDLHIQREGGLEMNIANLQSEKE-----------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 162 ks~~es~~Qkea~LEeqIkqLe~EIs-----------------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+.+.....+....++.++..++..+. .+...+.....++..+..+...+++++..+++.+..+
T Consensus 396 qeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 396 KSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655555544 2222334444444555555555555555555555444
No 62
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.12 E-value=0.77 Score=52.16 Aligned_cols=225 Identities=23% Similarity=0.216 Sum_probs=134.5
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHH-------Hh--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839 104 HIQKEATLEGTVQQLQNECDLYKEKVQ-------AT--------LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (476)
Q Consensus 104 ~~~~e~~~Ek~IkqLqeEi~~lkqkLE-------~l--------lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~ 168 (476)
-.|+=+.+|+.++-+-.+-+.+++.++ .. .-|.|.+|..+=+.+.++...-..-||.|+.+...+
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~ 486 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEA 486 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 478889999999887777777666655 21 124578888888888888888888999999887766
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH---
Q 011839 169 IQREGGLEMNIANLQSEKEFWLQ--------------KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--- 231 (476)
Q Consensus 169 ~Qkea~LEeqIkqLe~EIs~~~q--------------Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W--- 231 (476)
.--..++-+.|..|+.+-....+ -+..+..++....+.++.+.-..+.++++...+++--|..
T Consensus 487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~D 566 (961)
T KOG4673|consen 487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSD 566 (961)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 65555555555555544442222 1234444555555555555666777788777777766664
Q ss_pred hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhhhhh--hhc-ccchhhh
Q 011839 232 TQMESVSKETIAGLSVDITQLRMQVVELEESRNN----LLQENRQLKENVSSLRSQLSSDESKKLQH--ATS-EQKDFST 304 (476)
Q Consensus 232 LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~----LeeEIq~LkeqIseLqs~lqeLeeei~~~--~~~-~~e~~~~ 304 (476)
|+++.-++. ....+.-.-|-.+|..|...+.- +...-+.++..|..|+.|++.-+...-.. +++ ----|=-
T Consensus 567 lqk~nrlkQ--dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlR 644 (961)
T KOG4673|consen 567 LQKENRLKQ--DEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLR 644 (961)
T ss_pred HHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHH
Confidence 334443331 12222222333444444443332 33445667777777777777776555221 111 2223445
Q ss_pred HHHHHHhHHHHHHH----HHHHHHHhhhhh
Q 011839 305 QIEAAGALIDKLIT----ENIELVEKVNDL 330 (476)
Q Consensus 305 qie~a~~~v~kl~~----en~~l~ekvneL 330 (476)
|||+.+..+.+..+ +...|-++..+-
T Consensus 645 QIE~lQ~tl~~~~tawereE~~l~~rL~dS 674 (961)
T KOG4673|consen 645 QIEALQETLSKAATAWEREERSLNERLSDS 674 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Confidence 99999999888775 233444444433
No 63
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.32 Score=55.73 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=75.6
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 235 (476)
Q Consensus 156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE 235 (476)
.+.++|+-+++..--+...|..+|-.++-.+..-..+++.+....+-...+...|.+++-++.+++..|--||..|=++-
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33344444444333334444444444444444566777777777777788888888888888888888877776662221
Q ss_pred h-------chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 236 S-------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 236 I-------sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
. ....+.+.|+.....-..=...++..+.+|+.|+.+-...++-+..++.+|++.+.
T Consensus 517 kq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred HHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 11112233333333323333445555555666666666666666666666665553
No 64
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.08 E-value=0.82 Score=51.83 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 114 TVQQLQNECDLYKEKVQATLEETIQQ---LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~llqEkIkQ---Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
+.+.|+..+......+-.+..++--+ +..-...+...++.++.+|-.|++-+....|+-..++++++.|-.+...+.
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks 390 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKS 390 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 44555555555555555544444333 333445566689999999999999999999999999999999998888777
Q ss_pred HHHHHHHHH-------HHHHHH----------HHHHHHH---HHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHH
Q 011839 191 QKEAALEQK-------ISQLRD----------ESAALNM---KRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI 249 (476)
Q Consensus 191 qEla~Lepe-------iekL~~----------EeasLkQ---KLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i 249 (476)
.++..+... ++.|.. +...+.. .|...+..+.-|-.- ...++ +|+..+.......
T Consensus 391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~----~ekev~dLe~~l~~~~~~e 466 (786)
T PF05483_consen 391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI----REKEVHDLEIQLTTIKESE 466 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhh
Confidence 777655422 111111 1111111 111111111111111 12355 6666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc------ccchhhhHHHHHHhHHHHHHHHHHHH
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS------EQKDFSTQIEAAGALIDKLITENIEL 323 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~------~~e~~~~qie~a~~~v~kl~~en~~l 323 (476)
..-..+|+.|+.++..=.-.+..|......+...-..+..+...+... .-....-|-+-...-|++|-..|..|
T Consensus 467 q~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L 546 (786)
T PF05483_consen 467 QHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL 546 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777776666544555556555665555555555444333211 22333445566677788888889888
Q ss_pred HHhhhhhhhhhhhhhhh
Q 011839 324 VEKVNDLSVKLDRQSVA 340 (476)
Q Consensus 324 ~ekvneL~~~l~~~~~~ 340 (476)
.+.++.++-++.+.+-+
T Consensus 547 rneles~~eel~~k~~E 563 (786)
T PF05483_consen 547 RNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777766555443
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.05 E-value=0.21 Score=55.74 Aligned_cols=92 Identities=23% Similarity=0.194 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhH---HHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL---EMNIANLQSEKEF 188 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~L---EeqIkqLe~EIs~ 188 (476)
+..+..|+.+++.+...++....+. +.+......+.......+.....++........-...| +..|..|+..++.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~-~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEI-KMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4455556666666666644433333 55555555555555666666666655555444443333 3446677777776
Q ss_pred HHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLR 204 (476)
Q Consensus 189 ~~qEla~LepeiekL~ 204 (476)
..+++..|..+|+..+
T Consensus 406 s~~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666443
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.93 Score=51.59 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh--h----hcccchhhhHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH--A----TSEQKDFSTQIEAAG 310 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~--~----~~~~e~~~~qie~a~ 310 (476)
.++..+..+...+..|.+++..|......+..+...+...+..+.....++..+...- . ....+++..++.++.
T Consensus 514 ~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~ 593 (698)
T KOG0978|consen 514 TLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE 593 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555555555555555555555555555444211 1 126677888888888
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839 311 ALIDKLITENIELVEKVNDLSVKLDRQSVA 340 (476)
Q Consensus 311 ~~v~kl~~en~~l~ekvneL~~~l~~~~~~ 340 (476)
.-++++...+--|-|..-.|-.+|-.....
T Consensus 594 ~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 594 LELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889988888888888888888877444433
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.02 E-value=0.52 Score=48.50 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=70.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHH
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVD 248 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~ 248 (476)
.-+..|++.+..|+.........+..+.+-+..+.+..+.|..++..+.+....+. .-|. .++ .++..|..+...
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~-~~D~---~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE-SCDQ---EELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCH---HHHHHHHHHHHHHHHH
Confidence 33445556666666666655555555556666666666666555555544444331 1111 445 666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+...+.++..++.++..+...+..+..++..+..+|.+++.-.
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777777777776666666666443
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.29 Score=57.17 Aligned_cols=37 Identities=24% Similarity=0.537 Sum_probs=25.7
Q ss_pred CCcccccCCceeeccCCCccchhhhhhccccccccccCccCCCC
Q 011839 404 SSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA 447 (476)
Q Consensus 404 ~~~~~~~~~eiv~~~ld~~~~~~~~~q~~~~~~d~~~~vp~~da 447 (476)
-|-.-. .|+|--+||+-.-.++++ |.+.+++.|+++-
T Consensus 567 ~~n~m~-~GrVTF~PLNrl~~r~v~------yp~~sdaiPli~k 603 (1200)
T KOG0964|consen 567 KLNKMK-GGRVTFMPLNRLKARDVE------YPKDSDAIPLISK 603 (1200)
T ss_pred HHHhcc-CCeeEEeecccCchhhcc------CCCCCCccchHHH
Confidence 344443 489999999988776554 3355778888764
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.00 E-value=0.8 Score=56.15 Aligned_cols=141 Identities=8% Similarity=0.095 Sum_probs=72.3
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD 229 (476)
+...+...+..|....+...+.-..+.+++..++.++.....++..+..++..+......+..++..++..+..|...+
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~- 427 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK- 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444444444444444444444444444444444444444444444444444444444444444444444443322
Q ss_pred hHhh-hhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 230 SWTQ-MES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 230 ~WLk-kEI---sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
.|.. ..+ .|+..+.........++.++..++..+..+....+.++.....+......+....
T Consensus 428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~ 493 (1486)
T PRK04863 428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSE 493 (1486)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH
Confidence 2221 111 4556666666666677777777777777777777777666666555555444333
No 70
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.99 E-value=1 Score=51.30 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E 185 (476)
+.|.+|..+=..+..+ .+.....|+.|.+.-...-- .++.|+.....|+.-+.....-+-.+.+.|..++.+
T Consensus 453 E~I~~lm~EGEkLSK~-ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae 531 (961)
T KOG4673|consen 453 EIINQLMAEGEKLSKK-QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAE 531 (961)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4566777666666666 45555566666655444333 333333333334333333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 186 KEFWLQKEAALEQKISQLRDESAA 209 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~Eeas 209 (476)
...-....+.+...+..|...+.+
T Consensus 532 ~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 532 LTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 443333333333333333333333
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.99 E-value=0.8 Score=50.19 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDES---AALNMKRASLEERLK 222 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeq----IkqLe~EIs~~~qEla~LepeiekL~~Ee---asLkQKLasLEeKL~ 222 (476)
++..|-..|..|+..+++.......-+++ ..........|..++.....++..|..+. ..+..+|......+.
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~ 252 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELE 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666543322222222 11223444456666666666666666555 223344555555555
Q ss_pred HHHHhhhhH
Q 011839 223 LLEADKDSW 231 (476)
Q Consensus 223 ~LKaERD~W 231 (476)
.|+.+=..|
T Consensus 253 ~Lq~El~~~ 261 (522)
T PF05701_consen 253 SLQAELEAA 261 (522)
T ss_pred HHHHHHHHH
Confidence 554444333
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.97 E-value=0.12 Score=58.73 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=54.8
Q ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhh----hHhhhhh
Q 011839 163 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKD----SWTQMES 236 (476)
Q Consensus 163 s~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--KaERD----~WLkkEI 236 (476)
.++....++-..|+.++..|.+....=.+-+..|+.+|...+.....++.+|..-......- .+.|- .+...|-
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~ 539 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQEC 539 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchh
Confidence 33333333344444444444444444444444444444444444444444443322111111 11111 1122233
Q ss_pred --chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 237 --VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 237 --sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
.++.....++.++..|+.+++..++.+..++.++++|+.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777766654
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.97 E-value=0.54 Score=51.84 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~ 189 (476)
-.+..|..|+++|......|..+ +.+....+...++..|..|-+.++.-...+...+..+..+...+...
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l----------~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~ 322 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEEL----------DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHA 322 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35677777777777655544222 33444445555556666666655555555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011839 190 LQKEAALEQKISQLRDE 206 (476)
Q Consensus 190 ~qEla~LepeiekL~~E 206 (476)
......+..++..|...
T Consensus 323 ~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 323 KEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44444444444444444
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.97 E-value=0.43 Score=52.59 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------hhhh--Hhhhhh-ch
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA-------------DKDS--WTQMES-VS 238 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa-------------ERD~--WLkkEI-sL 238 (476)
+.+++..+...+.....+...+...+..|...+...+.++..+..++..++. =.+. -+..+| .+
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l 460 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEAL 460 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433311 0001 123444 55
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
...+..-..++..+..++.........+..+...|......+..-|+.
T Consensus 461 ~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 461 AEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555445555555566666666666666666666665555555544
No 75
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.96 E-value=0.086 Score=48.90 Aligned_cols=97 Identities=27% Similarity=0.345 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHh------hhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT------QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (476)
Q Consensus 196 LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WL------kkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Lee 268 (476)
+..++.....+.+.++.+..+++..+...+..+.... +.+| .|+..|+.+...+..|..++..+.+++..|..
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555544433333221 2555 66666666666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 269 ENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 269 EIq~LkeqIseLqs~lqeLeeei~ 292 (476)
..+..+.+|++|.+....+..-+.
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 777777777766666666655554
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.4 Score=51.59 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=97.3
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHH
Q 011839 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 176 (476)
Q Consensus 97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LE 176 (476)
+..+....-++-.-|++.|++++.+|..+.+.| .+...++...-+.++.++-.|..|+.+. .+++..|.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql--------~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La 118 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQL--------IETADDLKKLRKQIADLNARLNALEVQE---REQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 333333344444556666666666666666664 7778888888888888888888888876 56666677
Q ss_pred HHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhH
Q 011839 177 MNIANLQSE---------KEFWL-QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLS 246 (476)
Q Consensus 177 eqIkqLe~E---------Is~~~-qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~ 246 (476)
..|.-++.. +.... +.-..+.--|..+ +-...+....+...+..|.+.|.....+.-.++..+..+.
T Consensus 119 ~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l---~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~ 195 (420)
T COG4942 119 EQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGAL---NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQR 195 (420)
T ss_pred HHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777663 11111 1112222222222 2233444555555555554433333223334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
.+...|..-+.+-++-...+..++......+.+|...=+.|+..+.
T Consensus 196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555555554444444555555555555544444444444443
No 77
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.38 Score=53.37 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH-HH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WL 190 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~-~~ 190 (476)
+..+..|+.+|.-++++++....++|+-.+--+.- +...-.++....+|+...+...+.-..+.+.+.++++-... ..
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~l-LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~ 85 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLEL-LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR 85 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666677777777666666665554444432 23333455555555555555555555555555555433220 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHhhhhHhhh-----hh--chHHHHhhhHHHHHHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL-------EADKDSWTQM-----ES--VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L-------KaERD~WLkk-----EI--sLke~IssL~~~i~sLq~QV 256 (476)
..+..=+.-+..-...+.++.+++..++..+.++ ++|++.+.+. ++ .++..-..++.++..+.--.
T Consensus 86 ~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE 165 (772)
T KOG0999|consen 86 DGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFRE 165 (772)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 0111111112222333444445555555544444 4444443221 11 33344455555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhhhhhhcccchhhhHHHHHHhH---HHHHHH
Q 011839 257 VELEESRNNLLQENRQLKENVSSLRS---QLSSDESKKLQHATSEQKDFSTQIEAAGAL---IDKLIT 318 (476)
Q Consensus 257 e~Leee~s~LeeEIq~LkeqIseLqs---~lqeLeeei~~~~~~~~e~~~~qie~a~~~---v~kl~~ 318 (476)
..|=++.+.|+++|=.|+.+++.|++ .+.-+++++..- ..+-+-|++|.|.|.-| -+|++.
T Consensus 166 ~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRl-eEe~elln~q~ee~~~Lk~IAekQlE 232 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRL-EEETELLNSQLEEAIRLKEIAEKQLE 232 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888887643 334444555322 12556677777766543 344444
No 78
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.90 E-value=0.16 Score=52.76 Aligned_cols=193 Identities=20% Similarity=0.223 Sum_probs=105.0
Q ss_pred HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQ------LQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 93 ti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQ------Lq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
.|..|-.|.|.-.+-..-+...+.+|+..-..++++.......--.. ...+...+++-+....+..+.|..++.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~ 89 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVE 89 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555444444432222000000 001223333334444444444444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh
Q 011839 167 LHIQREGGLEMNIANLQSEKE------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 234 (476)
Q Consensus 167 s~~Qkea~LEeqIkqLe~EIs------------~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk 234 (476)
...|+-..++..++-|+.-+. -+..+-+.+..+++++.....+|..-+.++-....-|..|||.|=.+
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K 169 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCK 169 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333 12266678888888888888888888888888888888888887322
Q ss_pred hhchHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011839 235 ESVSKETIA-------GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (476)
Q Consensus 235 EIsLke~Is-------sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lq 285 (476)
=-.|...++ ..-.++..|-++-.-|.+.+..+.+|..-++..|+.+.+-+.
T Consensus 170 ~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 170 AHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 122367777777777777777777777777777776666555
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.89 E-value=0.15 Score=47.15 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE---SAALNMKR 214 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E---easLkQKL 214 (476)
..|..+.+.+.-....++..+|.|...+....+.-..|..++..|+.+++.....+..+...+....+. ...|..++
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence 345566666666666677777766665444444444444444444444444443333333333322221 11222222
Q ss_pred HhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 215 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 215 asLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
..||..+.... .=+ .....+.........+..+|..|+.+...|+..+..+..+..
T Consensus 83 q~LEeele~ae--------~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 83 QLLEEELEEAE--------KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22222222110 111 233344444444455555555555555555555555544443
No 80
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.82 E-value=0.81 Score=49.06 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 011839 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 228 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaER 228 (476)
...+.+.....+.+...++++..++....+..++++.+..++..|..+...+..+-..+++....|++++
T Consensus 105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555555555555555555555555544444444444444444443333
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.81 E-value=0.093 Score=53.91 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 011839 267 LQENRQLKENVSSLR 281 (476)
Q Consensus 267 eeEIq~LkeqIseLq 281 (476)
..++..|+..+..|+
T Consensus 275 ~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 275 RSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.79 E-value=0.86 Score=52.85 Aligned_cols=166 Identities=16% Similarity=0.223 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tI---KdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
+..+..++.++....+..+-...+- .+|+.+...........+--. .+.+.+.-....+=..+.+.+.+|..+...
T Consensus 364 ~~ql~~le~~~~e~q~~~qe~~~e~-eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~ 442 (980)
T KOG0980|consen 364 ENQLLALEGELQEQQREAQENREEQ-EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHAD 442 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444 455555555555444444333 555555555555555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Lee 268 (476)
.+++...+..+++.-..-....+.....|...+..++.+++.|..+--+..+.+..++.++..+..+++.|+..+.++.+
T Consensus 443 lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 443 LLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66666666666666655555666666677777777788888887776677777777777777777777777776555544
Q ss_pred HHHHHHHHHH
Q 011839 269 ENRQLKENVS 278 (476)
Q Consensus 269 EIq~LkeqIs 278 (476)
+-.....++.
T Consensus 523 s~~~~~~~l~ 532 (980)
T KOG0980|consen 523 SHNNQLAQLE 532 (980)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 83
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.77 E-value=0.84 Score=47.12 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=138.2
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Q 011839 102 ESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 181 (476)
Q Consensus 102 d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq 181 (476)
+..+++-+-+....+.++.++..+......+..++ .+++.++..+.-...+||.-=++|+..+......-......-..
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek-~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEK-DQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777778888888888888888888888 88888888888888888888777777765554333333333333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh---chH-----HHHhhhHHHH
Q 011839 182 LQSEKEFWLQ-KEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES---VSK-----ETIAGLSVDI 249 (476)
Q Consensus 182 Le~EIs~~~q-Ela~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI---sLk-----e~IssL~~~i 249 (476)
-+.++..+++ .+..|...++.-.+.+..+.+.-..+.+++..| +.-|...+.+-+ .|+ ..+.......
T Consensus 104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~ 183 (309)
T PF09728_consen 104 KRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEA 183 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 335555555555554444444444555555544 223333332222 111 1222222222
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh--------------------cccchh
Q 011839 250 TQLRMQVVELEE-------SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT--------------------SEQKDF 302 (476)
Q Consensus 250 ~sLq~QVe~Lee-------e~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~--------------------~~~e~~ 302 (476)
.........+.. .+..+..+-..|+.+++.+...+..+...+.-++- .++..+
T Consensus 184 ~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 184 EQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333334444 55556666667777777776666666665543321 166677
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839 303 STQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336 (476)
Q Consensus 303 ~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~ 336 (476)
...-|.+..-+-.++.|...+.+.+-.+..+++.
T Consensus 264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~k 297 (309)
T PF09728_consen 264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEK 297 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888777655555444443
No 84
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.72 E-value=0.44 Score=54.40 Aligned_cols=224 Identities=24% Similarity=0.287 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHhhhhHHHHHhh-----hHHH
Q 011839 110 TLEGTVQQLQNECDLYK----EKVQATLEETIQQLQRQNDLRMQ---KEATLEETIKQLRNQNDLHIQREG-----GLEM 177 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lk----qkLE~llqEkIkQLq~E~~d~lQ---k~A~LE~tIKdLks~~es~~Qkea-----~LEe 177 (476)
=|+..+..|+.+|-..+ +=++-.|-++|++|..|.+.-+- +-..|+.++.-|+.+..... ... .|-+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~-~~~~~~~~~L~e 511 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKAN-SQDQLMHPVLME 511 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-cccccccHHHHH
Confidence 36777777888877775 55566778999999999887665 56678888888886655541 100 2667
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------HHHHHHHh------HHHHHHHHHH------
Q 011839 178 NIANLQSEKEFWLQKE---AALEQKISQLRDESA----------------ALNMKRAS------LEERLKLLEA------ 226 (476)
Q Consensus 178 qIkqLe~EIs~~~qEl---a~LepeiekL~~Eea----------------sLkQKLas------LEeKL~~LKa------ 226 (476)
++..|+.++.+.+.+- -.|+.+++.|+..-. .+++++.+ +-++...|++
T Consensus 512 K~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g 591 (762)
T PLN03229 512 KIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSG 591 (762)
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 7888999988766653 356666666665543 33334444 4444443333
Q ss_pred -----hhhhHhhhhh-chHHHH--------hhhHHHHH-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HH
Q 011839 227 -----DKDSWTQMES-VSKETI--------AGLSVDIT-QLRMQVV--------ELEESRNNLLQENRQLKENVS---SL 280 (476)
Q Consensus 227 -----ERD~WLkkEI-sLke~I--------ssL~~~i~-sLq~QVe--------~Leee~s~LeeEIq~LkeqIs---eL 280 (476)
+=|.=|+..| .+++.| .+..-... -+..++. .++..+..|.++|++-.+.+- +|
T Consensus 592 ~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~L 671 (762)
T PLN03229 592 ASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDL 671 (762)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhH
Confidence 1111122222 222222 11111111 1111111 124455556666655444432 67
Q ss_pred HHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHH---HHHHHhhhhhhhhh
Q 011839 281 RSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN---IELVEKVNDLSVKL 334 (476)
Q Consensus 281 qs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en---~~l~ekvneL~~~l 334 (476)
...+..|+-++..+.-+---.....|+|....+.+-+.+= .+|+||--+|...+
T Consensus 672 K~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~ 728 (762)
T PLN03229 672 KSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAEL 728 (762)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 7778888877744322211222356666666665555542 36777777775544
No 85
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.72 E-value=0.92 Score=46.87 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhh
Q 011839 172 EGGLEMNIANLQSEKEFWLQ------KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAG 244 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~q------Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~Iss 244 (476)
+-.+-++|.+|+.++..+.. ++..+..++..++.+-..+..+++.+-.+.+.. +.+| .+-..+-.
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~--------he~m~k~~~~~De 204 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEY--------HEEMIKLFEEADE 204 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 33355555555555554331 223333444444444444444444443333222 2222 33333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
++.....+-.++..+...++.+..++..++..|.++...|..|...
T Consensus 205 ~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 205 LRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444433
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.62 E-value=0.75 Score=44.65 Aligned_cols=141 Identities=19% Similarity=0.271 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE 192 (476)
..|+.|.+++...+.. +....-.+.++..++..+..-.+.++..+..|+.. +..++.... .
T Consensus 27 ~lIksLKeei~emkk~-e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~--------------L~~y~kdK~----~ 87 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKK-EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ--------------LKNYEKDKQ----S 87 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHH----H
Confidence 4567777777777766 33333334555555555555555555555555544 444433332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 271 (476)
Q Consensus 193 la~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq 271 (476)
+..++.++..+..+-..++..-..|+.+...|+.|||.|..+-. .+...-..-...+.-|..++..|...+...+.++.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444445555566666554443 33333333333333444445554444444444433
Q ss_pred H
Q 011839 272 Q 272 (476)
Q Consensus 272 ~ 272 (476)
+
T Consensus 168 e 168 (201)
T PF13851_consen 168 E 168 (201)
T ss_pred H
Confidence 3
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.3 Score=55.90 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le 197 (476)
|...+..+...|++ |..++.+|....-+.--.+++....|..+....+........|..+|+.++...-....|...+.
T Consensus 435 ~nak~~ql~~elet-Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 435 LNAKKKQLQQELET-LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555666666544 44444666555555555555555555555555555555555555555555544444444444444
Q ss_pred HHHHH
Q 011839 198 QKISQ 202 (476)
Q Consensus 198 peiek 202 (476)
.++.+
T Consensus 514 ~qlkq 518 (1118)
T KOG1029|consen 514 HQLKQ 518 (1118)
T ss_pred HHHHH
Confidence 44433
No 88
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.58 E-value=0.47 Score=54.11 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 130 QATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (476)
Q Consensus 130 E~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas 209 (476)
|+.+..+|..|+.|....-+..+........|...+.-.......++.+..+|+.+|...+..+.++-.+|..|.++|=+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555566666666667776666777777777777777655
Q ss_pred HHHHHHhH
Q 011839 210 LNMKRASL 217 (476)
Q Consensus 210 LkQKLasL 217 (476)
|-.....|
T Consensus 109 lQKqvs~L 116 (717)
T PF09730_consen 109 LQKQVSVL 116 (717)
T ss_pred HHHHHHHH
Confidence 54444433
No 89
>PRK01156 chromosome segregation protein; Provisional
Probab=96.56 E-value=2.2 Score=49.14 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 011839 175 LEMNIANLQSEK 186 (476)
Q Consensus 175 LEeqIkqLe~EI 186 (476)
++.+|+.++..+
T Consensus 254 ~e~~i~ele~~l 265 (895)
T PRK01156 254 YESEIKTAESDL 265 (895)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.55 E-value=0.36 Score=44.84 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 202 QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 202 kL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
.|..+...+...+..++..+..|..+|+.|.+.==..+..|+.|..-+.++..-+..++.+. ..-.+.++..+..|+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek---~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEK---VQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33333334444444445555555566665443333556666666666666666666665552 222333333444444
Q ss_pred Hhhhh
Q 011839 282 SQLSS 286 (476)
Q Consensus 282 s~lqe 286 (476)
.++..
T Consensus 133 ~ql~~ 137 (140)
T PF10473_consen 133 KQLKE 137 (140)
T ss_pred HHHhh
Confidence 44433
No 91
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.48 E-value=1 Score=44.38 Aligned_cols=139 Identities=21% Similarity=0.268 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 133 lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
....|..+..+++.+....+++|-...+|....+...+--..+...=..|+..+......+.....+|..|+.-. ..
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA---ee 143 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA---EE 143 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344456666666666666666666666666554433332222222222222222222223333333333333221 13
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 213 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 213 KLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
+|...-..+..+.. .....+..++..+...+.++..|+..+.....+|++|..--++|.+.+
T Consensus 144 kL~~ANeei~~v~~----------~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 144 KLEKANEEIAQVRS----------KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333332 233377788888888899999999999999999999988888886654
No 92
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.44 Score=52.88 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=48.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhc----hHHHHhhh
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESV----SKETIAGL 245 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIs----Lke~IssL 245 (476)
+++..|.+..+.|+..+.+...=+..++.+-..+......++..+...|+++..|+.++|. |+..|. .-+.+..+
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~-Lk~~Ie~Q~iS~~dve~m 337 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDE-LKKQIELQGISGEDVERM 337 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHH
Confidence 3334444444444444444444444444444444444444444445555555555555555 233332 12344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 246 SVDITQLRMQVVELEESRNNLLQENRQL 273 (476)
Q Consensus 246 ~~~i~sLq~QVe~Leee~s~LeeEIq~L 273 (476)
+.+...|...+..+..+++.|.+++-.+
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5555555555555555555554444433
No 93
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.45 E-value=0.22 Score=56.76 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 188 FWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
.|.+|+..|..++..|......++.++..
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444443
No 94
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.43 E-value=0.00077 Score=75.47 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 136 TIQQLQRQNDLRMQKEATLEETIKQ 160 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKd 160 (476)
+++.|+.++..+++..+.+|..++.
T Consensus 333 qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 333 QVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=1.2 Score=51.29 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=45.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
+-+.++...+|+.-+..+ .+-|+.++.+...+-|..-.|++..+.|+++...-....+.|.++...|+....
T Consensus 645 ~~~~~k~~e~l~~~~~ky--------K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKY--------KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555554443 344577777777777777777777777777666666666666666666655544
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.38 E-value=0.43 Score=44.06 Aligned_cols=63 Identities=27% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
..|+...+.+..+-..++.+++.|+.....+.+++..|..++..|..+...+..++..+...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666666665555555555555555555555544444444443333
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.34 E-value=0.00093 Score=74.81 Aligned_cols=99 Identities=26% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhh-------h
Q 011839 179 IANLQSEKE---FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES-VSKETIAG-------L 245 (476)
Q Consensus 179 IkqLe~EIs---~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W--LkkEI-sLke~Iss-------L 245 (476)
+..|+.++. +++.++..++.++..|.+.+..|.+....+|+.+...-+-|... ++++| .++..+.. +
T Consensus 310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l 389 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKL 389 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 44555677888888899999888888888888887653322221 23333 33333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 246 SVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
..++..|+.++..+..++..+..+.+.|++.+
T Consensus 390 ~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 390 EFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444444444444444444433
No 98
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.34 E-value=0.74 Score=54.92 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=25.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.++..+.+.++-..=++.+...+..++..++.+++.|++.++..
T Consensus 191 ~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 191 ELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555556666666777777777766654
No 99
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.34 E-value=1.6 Score=45.17 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
.-+..|+...+-|+.+-..+...+..+..+.+.+..++.-+. +.++.+..+++.....+..+-..-.++...
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~-e~~~elr~~rdeineev~elK~kR~ein~k 84 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELR-EKAQELREERDEINEEVQELKEKRDEINAK 84 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355666666666666666666666666666665544322 222555555555555555555444444443
No 100
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.32 E-value=1.2 Score=51.08 Aligned_cols=70 Identities=21% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 147 ~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
+...+..++..++.++..+.........|......+.........+...|..++..++-.+.-+.+-..+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344444444444444444444444444444444444444444444444444444444444333333333
No 101
>PRK11281 hypothetical protein; Provisional
Probab=96.31 E-value=0.77 Score=54.82 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=21.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+.+...-..-++.+...+..++..++.+++.|++.++..
T Consensus 215 l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 215 LEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555556666666666666666666654
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.30 E-value=0.061 Score=55.37 Aligned_cols=56 Identities=30% Similarity=0.408 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
....+..++.++....+++..+..++..|..+...+.+.+..++.+...|+.+...
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777777777766666443333
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.25 E-value=3.4 Score=48.03 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=17.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839 105 IQKEATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 105 ~~~e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
.|.+.++...+-.|++.+..++..+
T Consensus 84 tqetriyRrdv~llEddlk~~~sQi 108 (1265)
T KOG0976|consen 84 TQETRIYRRDVNLLEDDLKHHESQI 108 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777777777777776666665
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.25 E-value=1.3 Score=43.10 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011839 114 TVQQLQNECDLYKEKVQAT 132 (476)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~l 132 (476)
.|..|+.++..+..+++.+
T Consensus 13 ki~~L~n~l~elq~~l~~l 31 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQEL 31 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666655555443
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.20 E-value=2.3 Score=45.72 Aligned_cols=106 Identities=10% Similarity=0.141 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le 197 (476)
+...|..++-+|+....++ .+.+.+++..-++..+.-..-+-.+.+.....++..+....+.++........+++..+.
T Consensus 79 i~~qlr~~rtel~~a~~~k-~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 79 IRPQLRALRTELGTAQGEK-RAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555 667776666666666666666666666666666666666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 198 QKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.++.+|..+..++--.-..|+.-..+|
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666555444444434444
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.14 E-value=1 Score=48.07 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES-------- 207 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~-Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Ee-------- 207 (476)
+.-++.+....-++....|..+.+|+.++.... .....+..+|..++........++..+...+..|...-
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~ 242 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL 242 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 345566666666677777777777766554321 12223455666666666666666666666666655432
Q ss_pred -------HHHHHHHHhHHHHHHHHHH---hhhhHhhhhh-chHHHHhhhHHHHHHHHH--------------HHHHHHHH
Q 011839 208 -------AALNMKRASLEERLKLLEA---DKDSWTQMES-VSKETIAGLSVDITQLRM--------------QVVELEES 262 (476)
Q Consensus 208 -------asLkQKLasLEeKL~~LKa---ERD~WLkkEI-sLke~IssL~~~i~sLq~--------------QVe~Leee 262 (476)
..+..++..++.++..|.. +.. -.+ .++.+|..++..+..... -...|...
T Consensus 243 ~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~h----P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (498)
T TIGR03007 243 AGSSVANSELDGRIEALEKQLDALRLRYTDKH----PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIE 318 (498)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHhcccC----hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHH
Confidence 2455556666666555511 111 111 333333333333222110 01223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh--hhcccchhhhHHHHHHhHHHHHHH
Q 011839 263 RNNLLQENRQLKENVSSLRSQLSSDESKKLQH--ATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 263 ~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~--~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
+..+..++..++.++..+..++..++.+.... ...+...|..+.+.+....+.++.
T Consensus 319 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 319 LAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555544444221 122556677777778777777776
No 107
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=3.4 Score=47.04 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
+...+..+++.++.....++-.++.-+.+.++-+...++-...++.+++++.+.....-+.-+.++.+....+.......
T Consensus 106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~ 185 (716)
T KOG4593|consen 106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH 185 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666677777777776666666667777777777777777777777776666555555555555444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh--hhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ--MESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk--kEIsLke~IssL~~~i~sLq~QVe~Leee~s~Lee 268 (476)
..+...+.+|..-...-....++.+...+.+..+...+..--. +.+.....+..++.....--.+.+.++.+...+-+
T Consensus 186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~e 265 (716)
T KOG4593|consen 186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLRE 265 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333322111 11133334455555555555555555556666666
Q ss_pred HHHHHHHHH---HHHHHhhhhhhhhhh
Q 011839 269 ENRQLKENV---SSLRSQLSSDESKKL 292 (476)
Q Consensus 269 EIq~LkeqI---seLqs~lqeLeeei~ 292 (476)
+...+++.. .-|+..+..|+....
T Consensus 266 e~~~~re~~~tv~~LqeE~e~Lqskl~ 292 (716)
T KOG4593|consen 266 ELATLRENRETVGLLQEELEGLQSKLG 292 (716)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 655443332 244555555544444
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.10 E-value=2.7 Score=45.50 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=7.7
Q ss_pred chhhhHHHHHHhHHHHHH
Q 011839 300 KDFSTQIEAAGALIDKLI 317 (476)
Q Consensus 300 e~~~~qie~a~~~v~kl~ 317 (476)
+.|.-+-..+.-++.++-
T Consensus 227 ~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 227 EELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 334434444444444444
No 109
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.10 E-value=2.9 Score=45.82 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh---hhh----hHhhHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Q 011839 77 ERQHLLQREAMAILEETVKHLRNERES---HIQ----KEATLEGTVQQLQNECDLYKEKVQA--TLEETIQQLQRQNDLR 147 (476)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~d~---~~~----~e~~~Ek~IkqLqeEi~~lkqkLE~--llqEkIkQLq~E~~d~ 147 (476)
|..+-| +|+|| |-|+|++|+..|-- .|| .-..||+.|+.|+..+..-..=+.+ +|.+.|..|=++.=..
T Consensus 304 Eslqpl-eedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~v 381 (527)
T PF15066_consen 304 ESLQPL-EEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRV 381 (527)
T ss_pred hccCCc-HHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHh
Confidence 555566 46665 67899999887754 233 4567888888888776542221111 1233333333344444
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (476)
Q Consensus 148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas 209 (476)
+-....++-++.+|+.. -+.-+..|..-+.++..+..++-.++..|-.|+++...
T Consensus 382 iLEKnd~~k~lqnLqe~-------la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEA-------LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred hhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555555555543 23333344555666777777888888888888777643
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.07 E-value=1.4 Score=45.14 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011839 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE 218 (476)
Q Consensus 176 EeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLE 218 (476)
..+...++..+..+..++..+..++..+......+...+...+
T Consensus 136 ~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433433333333
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.05 E-value=0.045 Score=52.22 Aligned_cols=108 Identities=29% Similarity=0.369 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Le 267 (476)
....+..+..++..+....+.+.+++..+..++..|.. ++ .....|..+...+..|+.++..++.++....
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~--------~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK--------ELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666555554322 22 2333444444444445555555555544455
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHh
Q 011839 268 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 326 (476)
Q Consensus 268 eEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ek 326 (476)
.-++.+++.+..|+.++..+ ..=+.+|-.||.+||++
T Consensus 144 k~~e~l~DE~~~L~l~~~~~----------------------e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNML----------------------EEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHH
Confidence 44544444444444333333 33445788899998874
No 112
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.01 E-value=2.3 Score=44.08 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=106.9
Q ss_pred HHHHHHHHhhhhhhh----hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 89 ILEETVKHLRNERES----HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 89 ~~eeti~~l~~e~d~----~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
+|.+-|-.|+-|.|. +..||--.-+.|.-+.+.++.+...|+. ..++ |-...-.+.+....+-..-.-|.++
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKL-neE~---ltkTi~qy~~QLn~L~aENt~L~Sk 78 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKL-NEET---LTKTIFQYNGQLNVLKAENTMLNSK 78 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHH---HHHHHHHHhhhHHHHHHHHHHHhHH
Confidence 344445555555554 5778888888888888888888877654 2333 2222333333444444445556666
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhh
Q 011839 165 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 244 (476)
Q Consensus 165 ~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~Iss 244 (476)
++.-.|.+..|+..|..+....+... .++.+-. .+--.--..++.+||.|++-.-.+.-.++.
T Consensus 79 Le~EKq~kerLEtEiES~rsRLaaAi-------~d~dqsq----------~skrdlelafqr~rdEw~~lqdkmn~d~S~ 141 (305)
T PF14915_consen 79 LEKEKQNKERLETEIESYRSRLAAAI-------QDHDQSQ----------TSKRDLELAFQRARDEWVRLQDKMNSDVSN 141 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHH----------hhHHHHHHHHHHHhhHHHHHHHHhcchHHh
Confidence 66666666666555555554444322 2222211 111111124689999999988888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
+...+..|..++...++..++|..+....+..+-
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr 175 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALR 175 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776666555
No 113
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.98 E-value=4.1 Score=46.58 Aligned_cols=14 Identities=50% Similarity=0.852 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhhh
Q 011839 90 LEETVKHLRNERES 103 (476)
Q Consensus 90 ~eeti~~l~~e~d~ 103 (476)
|-+|++||+++.|.
T Consensus 247 L~~tVq~L~edR~~ 260 (739)
T PF07111_consen 247 LLETVQHLQEDRDA 260 (739)
T ss_pred HHHHHHHHHHHHHH
Confidence 67899999999887
No 114
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.93 E-value=3.5 Score=46.77 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhhhhhhh-hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839 89 ILEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~-~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es 167 (476)
.++|.+.+|+..+++.+ |--++.+.. ++ .-|+|++|+.=.+.+.++....|+.+- .+.-+
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqV---------------ea-QgEKIrDLE~cie~kr~kLnatEEmLQ---qells 168 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQV---------------EA-QGEKIRDLETCIEEKRNKLNATEEMLQ---QELLS 168 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHH---------------HH-hhhhHHHHHHHHHHHHhhhchHHHHHH---HHHHh
Confidence 57899999999999874 444443322 11 334445555544444444444444321 11110
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 168 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 168 ~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+..|+..+-....+++.|+-+|..+..+....+.|+...|.-++.+
T Consensus 169 -----------rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 169 -----------RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred -----------hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 1334444444555555555566666666655666666555544443
No 115
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=4.3 Score=48.26 Aligned_cols=196 Identities=15% Similarity=0.167 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhH------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 140 LQRQNDLRMQKEATLEETIKQLRNQNDL------HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~~es------~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQK 213 (476)
...+...++++.+++.-.|+..+..... -.++-+....+|...+..+.............|+.+.++..++..+
T Consensus 260 ~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~ 339 (1141)
T KOG0018|consen 260 RKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGA 339 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344556677777888788777776655 2333444556666666666666666666667777777777666666
Q ss_pred HHhHHHHHHHHHHhhhhH-------------hhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 214 RASLEERLKLLEADKDSW-------------TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 214 LasLEeKL~~LKaERD~W-------------LkkEI--sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
...++.++..--..|+.. |+.|- .-...+..++.+...-+.-..++......++..+..+..++.
T Consensus 340 ~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sve 419 (1141)
T KOG0018|consen 340 KEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVE 419 (1141)
T ss_pred HHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666655432222210 11111 113334444444444444444445555555555666666665
Q ss_pred HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839 279 SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336 (476)
Q Consensus 279 eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~ 336 (476)
.+..++..|...+..... +.+.+...+......+..+-.+-+++-++..+.-.+|..
T Consensus 420 r~~~~~~~L~~~i~s~~~-~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 420 RLDKRRNKLAAKITSLSR-SYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 555555555555432211 222333344444555555555555555544444444433
No 116
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.90 E-value=0.0021 Score=73.81 Aligned_cols=141 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL-------QSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqL-------e~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
++.....+-+....++..+.+|...++.....+...+..++.| +..++.....+..+.....+|..+++.|..
T Consensus 143 lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~ 222 (859)
T PF01576_consen 143 LQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTR 222 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555554444444333333 333334444445555556666666666666
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhh---------------chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 213 KRASLEERLKLLEADKDSWTQMES---------------VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 213 KLasLEeKL~~LKaERD~WLkkEI---------------sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
.+...+.++..|...+..| ..++ .|...+..+..++..|..++..-...+..|...+..+...+
T Consensus 223 qLee~e~~~~~l~r~k~~L-~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El 301 (859)
T PF01576_consen 223 QLEEAESQLSQLQREKSSL-ESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAEL 301 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence 6666666666664444432 1222 23334444444444554444444444444444444444444
Q ss_pred HHHH
Q 011839 278 SSLR 281 (476)
Q Consensus 278 seLq 281 (476)
..|+
T Consensus 302 ~~~k 305 (859)
T PF01576_consen 302 EQWK 305 (859)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 117
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=4 Score=45.75 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~ 189 (476)
.|+..|..|+.+.+.+.+.|+.+. +.+-+... .-+++|.-.++-. .+-+.-...++...-.+|-.|+.+..++
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtk-eal~q~~s----~hkk~~~~g~e~E--esLLqESaakE~~yl~kI~eleneLKq~ 119 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTK-EALGQYRS----QHKKVARDGEERE--ESLLQESAAKEEYYLQKILELENELKQL 119 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHhhccchhhH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777764422 22222222 2222222211110 1111122233444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 226 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa 226 (476)
.+++.....+.+.+......+...-+.+|..+.+|++
T Consensus 120 r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~ 156 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRD 156 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 5566666666666666666666655666666666633
No 118
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.80 E-value=1.4 Score=39.81 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 254 MQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 254 ~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
.++..++..+..|..+|.-|-.+|
T Consensus 105 ~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 105 KELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.80 E-value=0.81 Score=47.37 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=17.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 127 EKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 127 qkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
..|+.-|.+.+..++.|...+.+..+.+..-+-.|+.
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~ 179 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRD 179 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555544444444444443
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.69 E-value=2.7 Score=47.48 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ-REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE---------- 206 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Q-kea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E---------- 206 (476)
.-|+.+...+-++....|..+..|+.++..-.- .....+++|..|.........+......++..++..
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~ 276 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVL 276 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 556666666666777777777777765544221 112223555555555555444444444444444432
Q ss_pred -------------HHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 207 -------------SAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (476)
Q Consensus 207 -------------easLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~ 272 (476)
...++.++..++.++..|....-. -+-.+ .++.+|..++..+... +..-...+..+.+.
T Consensus 277 ~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~-~hP~v~~l~~qi~~l~~~i~~e------~~~~~~~~~~~~~~ 349 (754)
T TIGR01005 277 PEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLA-NHPRVVAAKSSLADLDAQIRSE------LQKITKSLLMQADA 349 (754)
T ss_pred hhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 222333333333333333111000 00112 3333333333332221 11122233344444
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh--hhcccchhhhHHHHHHhHHHHHHH
Q 011839 273 LKENVSSLRSQLSSDESKKLQH--ATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 273 LkeqIseLqs~lqeLeeei~~~--~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
.+.....++.++.+++..+... ...+...|..+.+.+..+.+.|+.
T Consensus 350 a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~ 397 (754)
T TIGR01005 350 AQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT 397 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444322 122666788888888888888877
No 121
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.68 E-value=0.028 Score=63.22 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhc-----ccchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011839 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--DESKKLQHATS-----EQKDFSTQIEAAGALIDKLITENIELVE 325 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe--Leeei~~~~~~-----~~e~~~~qie~a~~~v~kl~~en~~l~e 325 (476)
..++..|..++..|..++..|+..+..|..+|.. |.-.+.+..+. .|=....+- ...+.++.|-.||+.|..
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~-~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQ-IKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555443 11112122111 222222221 235789999999999999
Q ss_pred hhhhh
Q 011839 326 KVNDL 330 (476)
Q Consensus 326 kvneL 330 (476)
.+..|
T Consensus 581 ~l~~l 585 (722)
T PF05557_consen 581 RLRSL 585 (722)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88776
No 122
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=2.8 Score=47.72 Aligned_cols=200 Identities=21% Similarity=0.149 Sum_probs=115.4
Q ss_pred HHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHH----HHHhHHHHHHHHHh
Q 011839 91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDL---RMQ----KEATLEETIKQLRN 163 (476)
Q Consensus 91 eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d---~lQ----k~A~LE~tIKdLks 163 (476)
+--+|+|.+-.....|+-+++-..|..|-..+..++-..+....+. -++-.+++. +.+ -.+.++....++-.
T Consensus 383 ~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l-~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~ 461 (716)
T KOG4593|consen 383 ETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEEL-PQVTKEREQLKGLVQKVDKHSLEMEASMEELYR 461 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHH
Confidence 3446667666677788999999999999999888888766655554 333333322 222 33445555666666
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------------
Q 011839 164 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL------------------- 224 (476)
Q Consensus 164 ~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L------------------- 224 (476)
.+....+....++-.++.|++......+.+..-..+..-+......+.+++..|+..=.+|
T Consensus 462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~r 541 (716)
T KOG4593|consen 462 EITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITR 541 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 7777777777788888888887777666665444444444444444444444444443333
Q ss_pred ---------------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 225 ---------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 225 ---------------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+..+...|+.|+ .|++.+..+.........--...-+-+++ ..++.+|+.++.+...+.+.++
T Consensus 542 Vl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk 620 (716)
T KOG4593|consen 542 VLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLK 620 (716)
T ss_pred eeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444 44443333333222222111111112222 4678888888887777777777
Q ss_pred hhhh
Q 011839 289 SKKL 292 (476)
Q Consensus 289 eei~ 292 (476)
+-+.
T Consensus 621 ~vF~ 624 (716)
T KOG4593|consen 621 EVFA 624 (716)
T ss_pred HHHH
Confidence 6664
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.62 E-value=4.6 Score=44.50 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=97.1
Q ss_pred HHHHHhhhhhhhh---hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839 92 ETVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (476)
Q Consensus 92 eti~~l~~e~d~~---~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~ 168 (476)
--|-.|+.+||-. ||.---+-..|+.|++.-..++.. ..+++.-..+++.....|..+..+|...|..-++++.+.
T Consensus 271 ~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D-~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L 349 (622)
T COG5185 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSD-SNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3455677777654 555555666788888888888888 677777778888888888888888888888778887777
Q ss_pred HHHhhhHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHH
Q 011839 169 IQREGGLEMNIAN-------L---QSEKEFWLQKEAALEQKISQLRDESAALNM----KRASLEERLKLLEA 226 (476)
Q Consensus 169 ~Qkea~LEeqIkq-------L---e~EIs~~~qEla~LepeiekL~~EeasLkQ----KLasLEeKL~~LKa 226 (476)
..+...|..+|.. + -.+..+...++..|.++..+|......-+. ...+++..++++..
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776542 2 334447788999999999999887654332 45577777777743
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.55 E-value=0.11 Score=49.45 Aligned_cols=89 Identities=21% Similarity=0.251 Sum_probs=41.5
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839 146 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (476)
Q Consensus 146 d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK 225 (476)
.+.+.+..+...+..++.........-..+..++..|+..+..+..++.....-++.|.++...|.-.+..+|.+++.|+
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555555555566666666666666666666666666666667777777776
Q ss_pred HhhhhHhhh
Q 011839 226 ADKDSWTQM 234 (476)
Q Consensus 226 aERD~WLkk 234 (476)
.|.+.++..
T Consensus 172 ~En~~Lv~R 180 (194)
T PF08614_consen 172 EENRELVER 180 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 125
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.54 E-value=2.9 Score=42.78 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.5
Q ss_pred CCceeecc
Q 011839 411 SGEIVQIP 418 (476)
Q Consensus 411 ~~eiv~~~ 418 (476)
.|.|+.|.
T Consensus 346 ~g~V~~i~ 353 (423)
T TIGR01843 346 NGKVKSIS 353 (423)
T ss_pred cEEEEEEC
Confidence 34444443
No 126
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=3.4 Score=42.30 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
|.+-+..+..+-+.+..++..|..|..+++....+...+.+++.+++.+|.....++..++..|....+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777777777777777777777777777777777777777666554443
No 127
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=7.7 Score=46.24 Aligned_cols=243 Identities=13% Similarity=0.147 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011839 73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEA 152 (476)
Q Consensus 73 ~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A 152 (476)
-+|-+-+.|-++-- -|.+-|+.+.. .-+ ...--+-.|.-|+..|..+...++... -.+.+++.+...+.-...
T Consensus 649 wdek~~~~L~~~k~--rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k-~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKE--RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLK-RSLEQNELELQRTESEID 721 (1141)
T ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666665544 67777777776 333 344455667777777777777776655 444666666666666666
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHh
Q 011839 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE-FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EAD 227 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs-~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L----KaE 227 (476)
.+.-+|-.++..++........|+++++.++..|= .+-+...----+|+...- ......++.+++..+..| .=+
T Consensus 722 ~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe 800 (1141)
T KOG0018|consen 722 EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFE 800 (1141)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 66666667777777766677777777777776664 233333222334444333 444455555555555444 222
Q ss_pred hhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcccchhhhH
Q 011839 228 KDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ-LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQ 305 (476)
Q Consensus 228 RD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~-LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~q 305 (476)
++.=++..+ ..++.++.++.++.++..++..+...+.++ ++.+. -+......+..+.+....... .+++.-.|+.+
T Consensus 801 ~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~-~~~~~tkl~~~ 878 (1141)
T KOG0018|consen 801 KQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRR-LVKELTKLDKE 878 (1141)
T ss_pred ecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Confidence 333344555 666666667777777766666666666665 33322 011122222233222222221 23355566666
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 011839 306 IEAAGALIDKLITENIELVE 325 (476)
Q Consensus 306 ie~a~~~v~kl~~en~~l~e 325 (476)
|.+..+.++++..|=..|-.
T Consensus 879 i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 879 ITSIESKIERKESERHNLLS 898 (1141)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 77777777777765544443
No 128
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.48 E-value=0.8 Score=52.32 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 111 LEGTVQQLQNE-CDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 111 ~Ek~IkqLqeE-i~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
|=+.++.|.++ +..+. .....++.+++.|+.+.+..+++...++.+++.|++
T Consensus 541 L~~a~~vlreeYi~~~~-~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~ 593 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQD-LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRE 593 (717)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445444 33322 224445555555555555555555555555555543
No 129
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.46 E-value=1.3 Score=46.04 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011839 257 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV 332 (476)
Q Consensus 257 e~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~ 332 (476)
..|..++....+++-...+.|..|..++-.+...... .+.++++|..++.++..-=..|..|..+|.+|--+...
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~-~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ-LAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444321 13578888888888888888889988888887666543
No 130
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.45 E-value=6.2 Score=46.73 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011839 77 ERQHLLQREAM-----AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE 151 (476)
Q Consensus 77 ~~~~~~q~e~~-----~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~ 151 (476)
....+++.+.+ -+.+|+|..|+.+.+..--....+++.++.+..++.....++..+..++ .++..+...+.+..
T Consensus 616 k~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er-~~~~~~~~~~~~r~ 694 (1072)
T KOG0979|consen 616 KSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRER-TKLNSELKSYQQRK 694 (1072)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHH
Confidence 34455555551 2445667777777777766777788888888888888888888888888 88888888888888
Q ss_pred HhHHHHHHHHH
Q 011839 152 ATLEETIKQLR 162 (476)
Q Consensus 152 A~LE~tIKdLk 162 (476)
+.+|-.+.+|-
T Consensus 695 ~~ie~~~~~l~ 705 (1072)
T KOG0979|consen 695 ERIENLVVDLD 705 (1072)
T ss_pred HHHHHHHHHHH
Confidence 88777654443
No 131
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.44 E-value=2.8 Score=41.88 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 133 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 133 lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
|.++.+.++.+...+-++...++..+..|+.........+..|+.++..++..|.....+...-..+-..|+.+...-..
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777778888888888888888888888888888888888888888877666666666666666666555555
Q ss_pred HHHhHHHHH
Q 011839 213 KRASLEERL 221 (476)
Q Consensus 213 KLasLEeKL 221 (476)
.+.....++
T Consensus 118 ~~~~ak~~L 126 (246)
T PF00769_consen 118 DEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.43 E-value=8.5 Score=46.34 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh--------------hhh-c
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ--------------MES-V 237 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk--------------kEI-s 237 (476)
..++.+..-++..+....+++.......+-++.+.+.++.+...++..++.|+..-+..=. ++. .
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~ 255 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGD 255 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 3345555555556666666665555555555555555666666666665555222211100 111 1
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+...|..+-..+..|...+..+-...+.+..+....+..+..+.....++++.+
T Consensus 256 ~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 256 LPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344445556677777777777777777777666666666666666666555
No 133
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.43 E-value=0.004 Score=71.56 Aligned_cols=104 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011839 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKISQLRDESAALNMKRASLEERLKLLEA 226 (476)
Q Consensus 148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~-LepeiekL~~EeasLkQKLasLEeKL~~LKa 226 (476)
...+..++..+..|+...+-....+..++.++..+..++..|..+... ....++.|.+....+..++..++..+..+.+
T Consensus 263 ~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~ 342 (859)
T PF01576_consen 263 EKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANA 342 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666677777777777777777888888888888888887754 3333666666666666677766666666655
Q ss_pred hhhhH------hhhhh-chHHHHhhhHHHHHH
Q 011839 227 DKDSW------TQMES-VSKETIAGLSVDITQ 251 (476)
Q Consensus 227 ERD~W------LkkEI-sLke~IssL~~~i~s 251 (476)
..+.| |..|+ ++...+...+..+..
T Consensus 343 ~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~ 374 (859)
T PF01576_consen 343 KVSSLEKTKKRLQGELEDLTSELEKAQAAAAE 374 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 44444 444444443333333
No 134
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.43 E-value=6.6 Score=47.36 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 117 QLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 117 qLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
.+.+.+....+. ....++.|++...+....-+.+++++....--+....+..|.-.+|+..+..|+..+..
T Consensus 1567 ~V~eaL~~Ad~A-q~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1567 DVVEALEEADVA-QGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 34456666666666666666677776666666666666666666666666655555553
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.42 E-value=1.9 Score=38.89 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=9.1
Q ss_pred chHHHHhhhHHHHHHHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVV 257 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe 257 (476)
.++..+..|+.++.-|-.++.
T Consensus 109 ~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444443
No 136
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.40 E-value=4.2 Score=43.42 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH----HH
Q 011839 114 TVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIA----NL 182 (476)
Q Consensus 114 ~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIk----qL 182 (476)
.|++.++--..+.--++..--.-|+.|+.++..++| -.+-+|-.-.+|+.+++-+...+-..+-.-+ +|
T Consensus 97 qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qL 176 (561)
T KOG1103|consen 97 QCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQL 176 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555567888888888888 4455666666777666666555444333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHHHhhhhHhhhhhchHHHHhhhHHHHHH
Q 011839 183 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-----------LLEADKDSWTQMESVSKETIAGLSVDITQ 251 (476)
Q Consensus 183 e~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~-----------~LKaERD~WLkkEIsLke~IssL~~~i~s 251 (476)
+.+..-|.+=-.-|.-+-.+....-+.+.++-..+--++. .+-+||.--|+.|.-.++.|+....+..-
T Consensus 177 eeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~ 256 (561)
T KOG1103|consen 177 EEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREF 256 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444443332222211 22577777788888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 252 Lq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
|+.++..++..-.-+.++..+|++.+..+...++-+.-.
T Consensus 257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 257 LRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 999999999999999999999999999888777766543
No 137
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.36 E-value=2.9 Score=40.60 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
..+..|..|+..+++- .....-.|...+....++-+-++.....|+.|+...-......-.++.+|+....++-
T Consensus 26 ~~l~~l~~ENk~Lk~l-q~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 26 RKLQELRKENKTLKQL-QKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 3333334455555566666666666777777777666666666666666665555554
No 138
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.35 E-value=1.7 Score=45.11 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=6.9
Q ss_pred HhHHHHHHHHHhhhh
Q 011839 152 ATLEETIKQLRNQND 166 (476)
Q Consensus 152 A~LE~tIKdLks~~e 166 (476)
..+..+++.|+.++.
T Consensus 163 e~Lq~Klk~LEeEN~ 177 (306)
T PF04849_consen 163 EALQEKLKSLEEENE 177 (306)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 139
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.34 E-value=6.2 Score=44.21 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=8.2
Q ss_pred ccchhhhHHHHHHhHHHH
Q 011839 298 EQKDFSTQIEAAGALIDK 315 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~k 315 (476)
....+...++.|..+.+-
T Consensus 474 ~~~~~~~~~~~~~~~~~~ 491 (650)
T TIGR03185 474 NAFELERAITIADKAKKT 491 (650)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 344444455555444333
No 140
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.16 E-value=4.9 Score=41.97 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 011839 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA-------TLEETIQQLQRQNDLRMQK-EATLEETI 158 (476)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~-------llqEkIkQLq~E~~d~lQk-~A~LE~tI 158 (476)
|+.++..-+.|+-+.++.-.+-..|...++.|....-.+..+.|. .|.-+|.+|..+...++.+ ...=|+-.
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt 108 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT 108 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777777777777665555544332 3455667777777777543 33334444
Q ss_pred HHHHhhhhHHHHHhhhHHHHHH
Q 011839 159 KQLRNQNDLHIQREGGLEMNIA 180 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIk 180 (476)
+.|...+....+.+..|+.++.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.10 E-value=4.2 Score=43.01 Aligned_cols=120 Identities=23% Similarity=0.171 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
+||+..+..+.........-+.+.+. ....||..+.+++.++......+..+.-++..-.++...|.+.+++.
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~-------~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKG-------DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666666666666555555544443 34457777777777777777777777777777778888888888888
Q ss_pred HHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839 218 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (476)
Q Consensus 218 EeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Le 267 (476)
-+-+..|-+|...=+.. =-..|...+.-|..|..+|..|--++.++.
T Consensus 175 layqq~L~~eyQatf~e---q~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 175 LAYQQELNDEYQATFVE---QHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHhhccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666552222 223444455556666666666555555443
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.00 E-value=5.3 Score=41.51 Aligned_cols=90 Identities=26% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhh---Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 203 LRDESAALNMKRASLEERLKLLEADKDS---WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 203 L~~EeasLkQKLasLEeKL~~LKaERD~---WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
+......+..+.+.|..++.+|++..+. .=..|. .+++.|..+..++...+.++..++.++..+...|+....+..
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444322222 122455 677777777777777888888888888888888888877777
Q ss_pred HHHHhhhhhhhhhh
Q 011839 279 SLRSQLSSDESKKL 292 (476)
Q Consensus 279 eLqs~lqeLeeei~ 292 (476)
.+..+|++.+...-
T Consensus 250 e~~~~I~~ae~~~~ 263 (312)
T smart00787 250 ELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776543
No 143
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.83 E-value=8.1 Score=42.85 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=77.2
Q ss_pred HHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHh
Q 011839 147 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE----------SAALNMKRAS 216 (476)
Q Consensus 147 ~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E----------easLkQKLas 216 (476)
+......+...|..|-+..+.-...+...+..+..+..-+......-..+..++..+... ...+..++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 334555566666666666666666666555555555555544444444444444443322 1222233333
Q ss_pred HHHHHHHHHHhhhhHhhhhh---chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 217 LEERLKLLEADKDSWTQMES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 217 LEeKL~~LKaERD~WLkkEI---sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
++.....+. +.+-...+ .+...+..+...+..+..+...+...+.+|...-...++.+..++..+..++..+.
T Consensus 356 l~~~~~~~~---~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 356 LEKRYEDLE---ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHH---HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 11112333 45556666666666666666777777777777777777777777777766666653
No 144
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.79 E-value=7.4 Score=44.08 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 011839 108 EATLEGTVQQLQNECDLYKEKVQAT 132 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~l 132 (476)
-..++..+.+|+.++.....+++..
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 145
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.73 E-value=2.5 Score=41.77 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhhhhhhhhhhhhhhcccchhh
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS------------SLRSQLSSDESKKLQHATSEQKDFS 303 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs------------eLqs~lqeLeeei~~~~~~~~e~~~ 303 (476)
+++.+..++..+.+|..++..++.....+..-.......+. +...++..|+.....+.++..|.++
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r 152 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFR 152 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence 44455666666666666666666665555554333333333 3456677777776666666666666
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.64 E-value=0.63 Score=48.02 Aligned_cols=54 Identities=19% Similarity=0.371 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
......+.+++.++..+++. +..+...++.|+.++..+.+....++...+.|..
T Consensus 39 ~~~~~~~~~~~~el~~le~E-e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQE-EEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp ---HH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666 3333333366666666666666665555555544
No 147
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.59 E-value=15 Score=44.66 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HhHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQ---ATLE------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE---~llq------EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe 183 (476)
++|++|-.+|.+...+|. +.|. .+-.+|+.+-....+.-..++.+.......++...+.....+..|+..-
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567888888877766642 2222 3345566666666666666666677777777777777777777787777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..|....+-+..+..+..........-.+++..|+..+..|
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.57 E-value=7.1 Score=40.95 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011839 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~ 189 (476)
-+-..+.+.++.+..+...++.+.+ ++..++-|..-+.++.+.....-..+...... ..+..|-.+|..++..+..|
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrq-kl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQ-KLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333222 22445555555554444444444333333222 66777888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 269 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeE 269 (476)
...+-.+..+.+.+..+.+.++.|-..|-.+++.+-.+... =| = .|-.+=.++.-|...+..++.+++.+...
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~----ri--v-DIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN----RI--V-DIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----Cc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888888766444333 11 1 45666667788888888888888888888
Q ss_pred HHHHHHHHH
Q 011839 270 NRQLKENVS 278 (476)
Q Consensus 270 Iq~LkeqIs 278 (476)
+..-+.-++
T Consensus 219 i~KYK~~le 227 (319)
T PF09789_consen 219 INKYKSALE 227 (319)
T ss_pred HHHHHHHHH
Confidence 888888777
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.49 E-value=1.5 Score=47.72 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 138 QQLQRQNDLRMQKEATLEE-TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~-tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
.||+..+..+.+...+++- .+.+.+...+...++...++.....++.+......++..+..++.++.++...++
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----- 402 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----- 402 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4566666666666555555 4444444444444444444444444444444444444444444443333332221
Q ss_pred HHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 217 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 217 LEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
|+ -+.-+..+..-...|....+.++..+.+.++.|+.|++|+.++
T Consensus 403 ------------------E~-n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 403 ------------------EE-NKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred ------------------HH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11 1112233333444556666677777777888888888887766
No 150
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.35 E-value=0.37 Score=40.95 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=44.5
Q ss_pred hh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 235 ES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 235 EI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
.| -|+..|..++..+..|..++..+.+.+..|..++++|+..-..|+.++..|
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 566677777888888888888888899999999999999999998888765
No 151
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.34 E-value=6.7 Score=41.98 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhh
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVS---SLRSQLSSDESKK 291 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs---eLqs~lqeLeeei 291 (476)
.+...+..++.++..++..+..+..++..++..+. ..+.++..|..+.
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~ 364 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDY 364 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 34444444444555555555555555554444444 3344445555444
No 152
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.34 E-value=4.6 Score=37.86 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE 192 (476)
-.+..++..+.....-=+.+-.--+.||+-++..+..++.+-...+..|+.......+.-...-+++.-+..+......+
T Consensus 20 ~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~ 99 (177)
T PF13870_consen 20 HQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQE 99 (177)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333322344445568888888888888888888888888888888887777777777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 193 EAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 193 la~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+....+.+.++.++-...+.....+......|
T Consensus 100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 100 LKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555555544444443
No 153
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.33 E-value=0.4 Score=54.13 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-------WLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~-------~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
.+.++..|+.|...+....+....+...+..+...... ...++..|..++..|..+...|.+.+..|+.++..
T Consensus 456 ~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 456 KAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp --------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667666665555555566666655444432 23455666667777777777777777777777765
No 154
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.22 E-value=15 Score=43.24 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=57.3
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
.-++.+++.+|+...-..+++-.+...++..-+..|.....+...+...++++..+...+..|..+....+..|+.|...
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444445555555556666666666666555555555555555554443
Q ss_pred Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQE 269 (476)
Q Consensus 231 WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeE 269 (476)
+..|+ .++..++...+.-.....++..+..+++.+..+
T Consensus 506 -l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 506 -LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 23333 555555444444444444444444444444333
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=13 Score=42.65 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Le 267 (476)
+..++..|..++..+......+......++++.+.|+.-... +.+|+ .++-.+...+.....+......|+...+...
T Consensus 501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~-l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK-LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555433322 12222 3444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHH------HHhHHHHHHHHHHHHHH
Q 011839 268 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEA------AGALIDKLITENIELVE 325 (476)
Q Consensus 268 eEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~------a~~~v~kl~~en~~l~e 325 (476)
....+++.++.+....+..+.-.....+ .+.+.|+.-.+. +.+-.+.|..|...+++
T Consensus 580 ~~le~i~~~~~e~~~ele~~~~k~~rle-EE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELEIEKFKRKRLE-EELERLKRKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 4444444444444333333333322111 111222211111 23345567777777765
No 156
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.19 E-value=2.8 Score=45.72 Aligned_cols=80 Identities=24% Similarity=0.260 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHH
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL 323 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l 323 (476)
........++.+++.+.+++..+.+.++.|++....|...+.++++... .|+.-.+..|+ +|
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~---------------~~~~s~d~~I~---dL 440 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK---------------EALGSKDEKIT---DL 440 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH---HH
Confidence 3444566777888888888888889999999999999888888877665 33344455556 88
Q ss_pred HHhhhhhhhhhhhhhhhh
Q 011839 324 VEKVNDLSVKLDRQSVAA 341 (476)
Q Consensus 324 ~ekvneL~~~l~~~~~~~ 341 (476)
.|-++.|-.-|+-++.-.
T Consensus 441 qEQlrDlmf~le~qqklk 458 (493)
T KOG0804|consen 441 QEQLRDLMFFLEAQQKLK 458 (493)
T ss_pred HHHHHhHheehhhhhhhh
Confidence 899999988887666554
No 157
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.16 E-value=6.4 Score=38.84 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q 191 (476)
+..|..++.++....... .-+..++..+...+.....-+..+|.+|.++=.. ..+........|..+..+.+....
T Consensus 8 d~~~~~~~~e~~~~E~e~-~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~ 83 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEE-QELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYA 83 (207)
T ss_pred HHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHH
Confidence 344555555554444442 2234445666666666666777777777665443 222233334444444444444333
Q ss_pred HHHHHHHHHH
Q 011839 192 KEAALEQKIS 201 (476)
Q Consensus 192 Ela~Lepeie 201 (476)
.+..++.-+.
T Consensus 84 dL~s~E~sfs 93 (207)
T PF05010_consen 84 DLNSLEKSFS 93 (207)
T ss_pred HHHHHHhhHH
Confidence 3333333333
No 158
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.12 E-value=15 Score=42.81 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=96.0
Q ss_pred HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011839 93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQR----QNDLRMQKEATLEETIKQLRNQNDLH 168 (476)
Q Consensus 93 ti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~----E~~d~lQk~A~LE~tIKdLks~~es~ 168 (476)
-+-.||.+.|.-+|+...+|..+..|+..+.+--+.|...-+|.=+.+.+ --..|-+..+.||.+|.++..++...
T Consensus 25 e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~ 104 (769)
T PF05911_consen 25 EAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAES 104 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999888764333332011111 01223335556777777776665443
Q ss_pred HHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 169 IQREGG-------LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 169 ~Qkea~-------LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
.-.-.. ...-|..|.........++..+..+++....++++|+-.+--++..+..--.||+-
T Consensus 105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 22347777777778888888888999999999999999999888888877666665
No 159
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.05 E-value=13 Score=41.95 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---------hhhHhhhhhchHHHHh
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD---------KDSWTQMESVSKETIA 243 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE---------RD~WLkkEIsLke~Is 243 (476)
.-|.+++..|+.....+..+-...-.++..++.+...+...+..-++...+|+.+ |..+++.=+.+-..|.
T Consensus 422 ~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~ 501 (594)
T PF05667_consen 422 APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIR 501 (594)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHH
Confidence 3345555555555544444444444445555555555555555555555555333 3334443335555556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENR 271 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq 271 (476)
-++.+|.....+...|+.+++.+.....
T Consensus 502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 502 KQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555555444
No 160
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.02 E-value=5.9 Score=42.39 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=8.9
Q ss_pred hhhhhhhhhccccccc
Q 011839 333 KLDRQSVAAGLSSAIG 348 (476)
Q Consensus 333 ~l~~~~~~~~~ss~~~ 348 (476)
.|+....-++.++-+.
T Consensus 313 ~l~~~~I~AP~dG~V~ 328 (457)
T TIGR01000 313 DSQKGVIKAPEDGVLH 328 (457)
T ss_pred HHhCCEEECCCCeEEE
Confidence 4444444677777554
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.02 E-value=8.6 Score=39.78 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHH
Q 011839 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQL 252 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sL 252 (476)
.-+=+|..|+....+-.++...-+.+|..|+-++..|......++.....|.. ++ .-+-.|..+...+.+.
T Consensus 36 QrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh--------dlq~Ke~qv~~lEgQl~s~ 107 (307)
T PF10481_consen 36 QRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSH--------DLQVKESQVNFLEGQLNSC 107 (307)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH--------HHhhhHHHHHHHHHHHHHH
Confidence 33444566666666666666666667777777776666666666555443333 22 3334555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh----------cccchhhhHHHHHHhHHHHHHHHHHH
Q 011839 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT----------SEQKDFSTQIEAAGALIDKLITENIE 322 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~----------~~~e~~~~qie~a~~~v~kl~~en~~ 322 (476)
..++..|+.++.-+..+....+... ..-..++..+.+ ...-...+..+-++.-..+=+.|.-.
T Consensus 108 Kkqie~Leqelkr~KsELErsQ~~~-------~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkr 180 (307)
T PF10481_consen 108 KKQIEKLEQELKRCKSELERSQQAA-------SSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKR 180 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------ccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 5555554444444444443332222 222222212211 12233334444455555555666666
Q ss_pred HHHhhhhhhhhh
Q 011839 323 LVEKVNDLSVKL 334 (476)
Q Consensus 323 l~ekvneL~~~l 334 (476)
|...|--|.++.
T Consensus 181 le~e~k~lq~k~ 192 (307)
T PF10481_consen 181 LEAEVKALQAKK 192 (307)
T ss_pred HHHHHHHHhccc
Confidence 655555565543
No 162
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.91 E-value=18 Score=43.11 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=31.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHH
Q 011839 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS------SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDK 315 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs------eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~k 315 (476)
+..+.+++..|+..-...+..+....+.|.+++..+. .++...+++..+.....-+.+.+.+..|++-.....+
T Consensus 320 v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~ 399 (1072)
T KOG0979|consen 320 VEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQK 399 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 3333334444444444433333333333333333333 2233333444444444444555666555444444444
Q ss_pred HH
Q 011839 316 LI 317 (476)
Q Consensus 316 l~ 317 (476)
++
T Consensus 400 ~~ 401 (1072)
T KOG0979|consen 400 LR 401 (1072)
T ss_pred HH
Confidence 43
No 163
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.84 E-value=11 Score=41.79 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=78.6
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHh
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EAD 227 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--KaE 227 (476)
..-++-..|+.|+..-.........++.-.+.++.-..+|.-.+..|..+++.-.++-.+|..+.++|-..++.- --+
T Consensus 289 ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e 368 (622)
T COG5185 289 EAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH
Confidence 333444444444444444444455555566666666666666666666666666666666666666665555432 011
Q ss_pred hhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011839 228 KDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (476)
Q Consensus 228 RD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lq 285 (476)
-=+.+.+|- .|.+.+...+-....|...|...+-+..+.-.+..++..+.+++..+|.
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111122333 5666777777777788888877776666666666666666665554443
No 164
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.74 E-value=1 Score=37.47 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (476)
Q Consensus 135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeie 201 (476)
+.+.+|+.....++..++.++..+..|+.++....+....|.....+|+.+-..|...+..+-.++.
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457788888888888888999999999988888888888888888888888888888877776665
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.74 E-value=3.5 Score=38.62 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
+.++..+++........+..++..+.+....+...+...++++.
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 133 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLD 133 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 166
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.49 E-value=11 Score=39.13 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
.+.--..+++.|..-.+..-.-||..|+.|+..+..++-.-
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~ 94 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES 94 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455677777778888899999999999998888653
No 167
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.47 E-value=19 Score=41.99 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAAL 210 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasL 210 (476)
+...+..+.++++.+......+
T Consensus 327 ~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 327 LEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333333
No 168
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.43 E-value=2.3 Score=42.45 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=46.5
Q ss_pred HHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 225 KaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
..|++.++.+-...-+.|...+++|..|..-|+.++++++.....+..+.+.+.-|...+..+..+
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333445577777788888888888888888888888888877777777777777776
No 169
>PLN02939 transferase, transferring glycosyl groups
Probab=93.40 E-value=22 Score=42.45 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 171 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk 171 (476)
...-.+.+.+-.++.-+|.++.+-........|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (977)
T PLN02939 159 EKILTEKEALQGKINILEMRLSETDARIKLAAQE 192 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhc
Confidence 4444444455555555555555544444333333
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.32 E-value=2.8 Score=38.05 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
......+..|+.++..|+.+...+.+=.=+--+.+.+|+.++..++.=
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666665555555555555555555555543
No 171
>PF15294 Leu_zip: Leucine zipper
Probab=93.27 E-value=7.4 Score=40.13 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=49.6
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
|.-.++.... .++-+.|..|+.|+..++-.| +.++.....++....+++..|++|+...+
T Consensus 118 L~pl~e~g~~--~ll~kEi~rLq~EN~kLk~rl--------~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 118 LEPLNESGGS--ELLNKEIDRLQEENEKLKERL--------KSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred cccccccchH--HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666433 788899999999998877765 77899999999999999999999999433
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.22 E-value=5.7 Score=41.25 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 119 QNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ 198 (476)
Q Consensus 119 qeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lep 198 (476)
.+++.+...+-.-.+..- -||++++..++-.+-.|..+|-+++. .+.+++.++..+..++..++-
T Consensus 83 k~~l~evEekyrkAMv~n-aQLDNek~~l~yqvd~Lkd~lee~eE--------------~~~~~~re~~eK~~elEr~K~ 147 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSN-AQLDNEKSALMYQVDLLKDKLEELEE--------------TLAQLQREYREKIRELERQKR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 77888888888777777766666554 588888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh-----hh--------------chHHHHhhhHHH-HHHHHHHHHH
Q 011839 199 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQM-----ES--------------VSKETIAGLSVD-ITQLRMQVVE 258 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk-----EI--------------sLke~IssL~~~-i~sLq~QVe~ 258 (476)
.+..|..+...|+..+.....-|. ++.--|-. +. ...+....|... -..|.-.+..
T Consensus 148 ~~d~L~~e~~~Lre~L~~rdeli~----khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkK 223 (302)
T PF09738_consen 148 AHDSLREELDELREQLKQRDELIE----KHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKK 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHH
Confidence 888888888888777755533332 11111111 00 123333333333 3345556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 259 LEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 259 Leee~s~LeeEIq~LkeqIseLqs 282 (476)
|-.+...|..+|+.|+.++...+.
T Consensus 224 l~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 224 LADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777765533
No 173
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.20 E-value=15 Score=42.49 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhhhhhhhhHhh---HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHH---HHhHHHHHH
Q 011839 89 ILEETVKHLRNERESHIQKEAT---LEGTVQQLQNECDLYK---EKVQATLEETIQQLQRQNDLRMQK---EATLEETIK 159 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~---~Ek~IkqLqeEi~~lk---qkLE~llqEkIkQLq~E~~d~lQk---~A~LE~tIK 159 (476)
+|.|+|.+|++|.|..+-.-.. |.....-|+.++...+ |-+--.+.++|..|..+.+.-+.. ...+..++.
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 7889999999999986543332 3444444444444421 111112556677787777776663 334445555
Q ss_pred HHHhhh
Q 011839 160 QLRNQN 165 (476)
Q Consensus 160 dLks~~ 165 (476)
-|+...
T Consensus 539 ~Lk~~~ 544 (762)
T PLN03229 539 MLNEFS 544 (762)
T ss_pred HHHHHH
Confidence 555443
No 174
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.19 E-value=17 Score=40.47 Aligned_cols=249 Identities=15% Similarity=0.199 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHH-----
Q 011839 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQA----------TLEETIQQLQRQNDLRMQ----- 149 (476)
Q Consensus 85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~----------llqEkIkQLq~E~~d~lQ----- 149 (476)
+.++-.++.|+.+.++.+-.+..|.--...|.+|.+....+++.+-. .+.+.+.+++.++..+..
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34556677777777777777777777777777777777776666532 344455555555554444
Q ss_pred -------HHHhHHHHHHHHHhhhhHHHH----HhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 011839 150 -------KEATLEETIKQLRNQNDLHIQ----REGGLEMNIANLQSEKEFW------------LQKEAALEQKISQLRDE 206 (476)
Q Consensus 150 -------k~A~LE~tIKdLks~~es~~Q----kea~LEeqIkqLe~EIs~~------------~qEla~LepeiekL~~E 206 (476)
-...++..+..|+...+.--. -+..+-.+|..|+..+... ..++..+..++......
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 223333333333333332211 1223444455555555422 12222222222222222
Q ss_pred HHH-----HHHHHHhHHHHHHHH-------HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 011839 207 SAA-----LNMKRASLEERLKLL-------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN---NLLQEN 270 (476)
Q Consensus 207 eas-----LkQKLasLEeKL~~L-------KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s---~LeeEI 270 (476)
-.. ....+..+..+|..| ...|+. +.+.. .+...|......+..|..++..+..+.. ......
T Consensus 268 L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~-V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~ 346 (560)
T PF06160_consen 268 LKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKY-VEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV 346 (560)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 211 122333444455544 222332 33344 7777888888888888888888887653 244556
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhc-------------ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 271 RQLKENVSSLRSQLSSDESKKLQHATS-------------EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 334 (476)
Q Consensus 271 q~LkeqIseLqs~lqeLeeei~~~~~~-------------~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l 334 (476)
..+..++..+..++..+...+....+. ..+.+..+......-|..|-.+...-.+++..+..+|
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888887777777777554332 2333333444444455556666666666666665544
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.15 E-value=0.85 Score=37.94 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 231 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W 231 (476)
+.+|+..|....-..+.|.-+++.|+.++..+...-..|..+-.+|+.+|..|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555566666555555555555555555555554
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.03 E-value=5 Score=36.62 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
...+.+++..+..++.........++.++..+..+.+.+..++..++.++
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333333333333333333
No 177
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.96 E-value=0.96 Score=37.98 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
-|+..|..++..+.+|+.++..+...+..|..++++|+..-..|+.++..|
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777788888888888888889999999998888888888765
No 178
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.89 E-value=20 Score=40.64 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=29.6
Q ss_pred HHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011839 281 RSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS 338 (476)
Q Consensus 281 qs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~~~ 338 (476)
.+.++.|-..+-...+| +...++.-|+-|..|-.++-......++|--+|+-++
T Consensus 291 d~~i~~L~~di~~~~~S----~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s 344 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEAS----LVEEREKHKAQISALEKELKAKISELEELKEKLNSRS 344 (629)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444433333 3344455566666666666666666777777775543
No 179
>PRK11281 hypothetical protein; Provisional
Probab=92.80 E-value=28 Score=42.12 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+-..+..|...+..+-...+.+..++...+..++.+.....++++.+
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666555555
No 180
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.77 E-value=24 Score=41.15 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q 191 (476)
|..+.-|..+++...++ .+.+++++-+|+.-+..+++..-.. +++.+...+.- +-..-.+.+........
T Consensus 23 e~e~~~lk~~l~~~~~~-~~~~e~r~~hld~aLkec~~qlr~~-------ree~eq~i~~~--~~~~s~e~e~~~~~le~ 92 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQ-KLALEDRVSHLDGALKECMRQLRQV-------REEQEQKIHEA--VAKKSKEWEKIKSELEA 92 (769)
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHhhhhhHHHHHHHHHHHHh-------hHHHHHHHHHH--HHHHhHHHHHHHHHHHH
Confidence 45566777788888888 7888888888888888888754332 22111111110 11112334444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQEN 270 (476)
Q Consensus 192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEI 270 (476)
++..+..++..+..++..+...|...+.-|..|...|.. .-.++ .|...+.+...++.+|+.++-.+.+++.-...|-
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~-~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQ-AEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888888887777777777555544 33566 8888888888888888888888888776655554
Q ss_pred HHH
Q 011839 271 RQL 273 (476)
Q Consensus 271 q~L 273 (476)
.--
T Consensus 172 ~~~ 174 (769)
T PF05911_consen 172 EYS 174 (769)
T ss_pred HHh
Confidence 433
No 181
>PRK10698 phage shock protein PspA; Provisional
Probab=92.69 E-value=11 Score=37.15 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ 202 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeiek 202 (476)
....+..+..|+.........-..|...+..|+..+..+..+...|..++..
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444433
No 182
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.64 E-value=10 Score=36.52 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011839 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EI 186 (476)
.+.+++..|+++++.+...+..+-...... +.++.+++.+.......+..... ..+.-. ++--...=..+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~~~A~~-------Al~~g~--edLAr~al~~k 93 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWEKQAEL-------ALAAGR--EDLAREALQRK 93 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHcCC--HHHHHHHHHHH
Confidence 348999999999999999999986666555 66666666666655555555433 322211 11112223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839 187 EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 235 (476)
Q Consensus 187 s~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE 235 (476)
.........+...|..+......|+..+..++.++..++..++.+.-..
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666666654444
No 183
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.59 E-value=21 Score=40.14 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=48.3
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHH-----
Q 011839 103 SHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM----- 177 (476)
Q Consensus 103 ~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEe----- 177 (476)
+.=+++..+++..+.|+.-+..++--+.. +......+.++++.+...|..-+.+++...++...|..
T Consensus 256 k~~~~~eslre~~~~L~~D~nK~~~y~~~--------~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 256 KDPGKEESLREKKARLQDDVNKFQAYVSQ--------MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777776666666555433 33333333333333333333333333333333333322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 178 -----NIANLQSEKEFWLQKEAALEQKISQLRDESAALN 211 (476)
Q Consensus 178 -----qIkqLe~EIs~~~qEla~LepeiekL~~EeasLk 211 (476)
.+.+...+..+..+++..|.+++..|..+.-.++
T Consensus 328 ~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 328 GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2233334444556666666666666655544333
No 184
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.56 E-value=19 Score=39.52 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.7
Q ss_pred chhHHHHHHhh
Q 011839 453 PFRLVSFVAKY 463 (476)
Q Consensus 453 pfrlisfva~y 463 (476)
+|||-.|.=||
T Consensus 484 ~ir~g~fLrr~ 494 (511)
T PF09787_consen 484 SIRLGIFLRRY 494 (511)
T ss_pred hHHHHHHHhcC
Confidence 67888888777
No 185
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.43 E-value=12 Score=36.96 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhhh-hhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 011839 88 AILEETVKHLRNERESH-IQKEATLEGTVQQLQNECDLYKEKVQA 131 (476)
Q Consensus 88 ~~~eeti~~l~~e~d~~-~~~e~~~Ek~IkqLqeEi~~lkqkLE~ 131 (476)
+.+.+++..|.....-. -++....+..++.+.+.+..+...|+.
T Consensus 8 ~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~ 52 (247)
T PF06705_consen 8 ASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEA 52 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433222 233344444555555555555555444
No 186
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=92.04 E-value=1.6 Score=36.24 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 148 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 148 lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
.+.++.....|+.|..+.+.....+..+...|+.|+..+......+..+..++..+..+...+...+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666666666666666666666555555555555555555444444433
No 187
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.01 E-value=26 Score=40.15 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=104.7
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011839 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (476)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~ 169 (476)
|...-..+-+-.+-+.++-..++..|..+=..+=+....-+..++-.|-+.++++.++....-..-.-...+...-+...
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLk 102 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLK 102 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHH
Confidence 33444444444455555555566666554332222222223333333355555555554422111111111111222444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhHHHHHHHHHHhhhhHhhh
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL---------------NMKRASLEERLKLLEADKDSWTQM 234 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasL---------------kQKLasLEeKL~~LKaERD~WLkk 234 (476)
+....+...+..|+...+....+...|..++++|..+.+.. ..+|..+..+|+.|+.+|..=|++
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlek 182 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEK 182 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666777777777777777777666554 257777778888887777665443
Q ss_pred hhchHHHHhh-------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 235 ESVSKETIAG-------------------------------LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 235 EIsLke~Iss-------------------------------L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
=+.+...|.. -...+..|..-|..|+..+......++.|.+++-.|
T Consensus 183 v~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 183 VLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred HHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443322 234456777788888888888888888888888766
No 188
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.84 E-value=4.9 Score=36.12 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 154 LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
++..+..|+.+..+-.|+...|+.+|..+...++.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 189
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.83 E-value=19 Score=37.87 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=91.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH--HHhhhHHHHHHHHHHH
Q 011839 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI--QREGGLEMNIANLQSE 185 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~--Qkea~LEeqIkqLe~E 185 (476)
..+....+..+.+..-..+.. ....++.-++.+....-+++...|..+..|+.+++.-. +.......++..|...
T Consensus 147 ~~i~n~~~~~y~~~~~~~~~~---~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~ 223 (444)
T TIGR03017 147 ATVANAFAQAYIDTNIELKVE---PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQ 223 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHH
Confidence 344444444454444433322 12334466777777888888888888888888765431 1111122344444444
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh-chHHHHhhhHHHHH
Q 011839 186 KEFWLQKEAALEQKISQL-----------RDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDIT 250 (476)
Q Consensus 186 Is~~~qEla~LepeiekL-----------~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI-sLke~IssL~~~i~ 250 (476)
......+......++... ......+.+++..++.++..| +.++. -.+ .++..|..++..+.
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~h----P~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 224 LVAAQAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNH----PQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHHHHHHHH
Confidence 443333332222222111 011234555666666665555 11111 122 33444444433332
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHH
Q 011839 251 QLRMQ-VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 251 sLq~Q-Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
..... ...+..+...+......+..++..++.++..+.... .+...|..+.+.+..+.+.|+.
T Consensus 300 ~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~-----~~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 300 AEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQR-----DEMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 111222222333333344444443333333333322 2556777788888877777776
No 190
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.60 E-value=1.9 Score=35.88 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 209 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 209 sLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
++...+++-.+.|.+|..|-..|-++|..+...|..|+..+..+..++..+...+...+.++..|+..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777788777777777777777777777777777777777777666666666666655543
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.60 E-value=15 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011839 115 VQQLQNECDLYKEKVQA 131 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~ 131 (476)
|.++..+.+.+..+++.
T Consensus 29 l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 29 LQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 192
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.57 E-value=7.3 Score=40.48 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011839 313 IDKLITENIELVEKVNDLSVKLDRQSVA 340 (476)
Q Consensus 313 v~kl~~en~~l~ekvneL~~~l~~~~~~ 340 (476)
+-||+.|+..|.+.|-.|..+|++....
T Consensus 221 LkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999988664443
No 193
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.86 E-value=4.7 Score=41.63 Aligned_cols=103 Identities=25% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhhh--hHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKD--SWTQMES-VSKETIAGLSVDITQLRMQVVELEE 261 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L----KaERD--~WLkkEI-sLke~IssL~~~i~sLq~QVe~Lee 261 (476)
.++++..|+.++++|+.+..+--.+|++||+.+.-- ..++. .-|+.|. .|-+....+......|.+++..-+.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 467777788888888888887777888888776643 12222 1245555 5555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 262 SRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 262 e~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
.+..++......+.+|..|...+.-++.+.
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666655
No 194
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.85 E-value=17 Score=35.98 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 136 TIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+|.++.++...+......+...+..|+.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 195
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.83 E-value=2.7 Score=35.92 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-------EGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qk-------ea~LEeqIkqLe~EIs~~~qEla~Lepeie 201 (476)
+.+|+......+-.++-++..|.+|+.++....+. +..|..+..+|+.+-..|...+..|..+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666667777777777777776666655 444777777777777777777776666554
No 196
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.73 E-value=33 Score=38.60 Aligned_cols=29 Identities=7% Similarity=0.073 Sum_probs=16.1
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011839 165 NDLHIQREGGLEMNIANLQSEKEFWLQKE 193 (476)
Q Consensus 165 ~es~~Qkea~LEeqIkqLe~EIs~~~qEl 193 (476)
.+...+.+..++.+++.++.+......++
T Consensus 257 GG~~~~~r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 257 GGDLFEEREQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655444444
No 197
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.64 E-value=23 Score=36.64 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=54.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH--HH
Q 011839 106 QKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN--LQ 183 (476)
Q Consensus 106 ~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq--Le 183 (476)
+.-.++...|..|..+-..+++..+. ....-.-++...|+.|-...++.+.+....+...=-..+++. |.
T Consensus 101 ~~~rll~d~i~nLk~se~~lkqQ~~~--------a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD 172 (330)
T KOG2991|consen 101 KYTRLLSDDITNLKESEEKLKQQQQE--------AARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD 172 (330)
T ss_pred cccchhHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence 44456777777777766666666422 333445566677777777777777666655544433333222 22
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 184 SEKE----FWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 184 ~EIs----~~~qEla~LepeiekL~~EeasLkQ 212 (476)
-.|. ....++...+.+++.++++.++|+.
T Consensus 173 PAinl~F~rlK~ele~tk~Klee~QnelsAwkF 205 (330)
T KOG2991|consen 173 PAINLFFLRLKGELEQTKDKLEEAQNELSAWKF 205 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 2232 2333445555666666666665543
No 198
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.53 E-value=2.7 Score=34.70 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 154 LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
||..+.-|++.+++...+-+..+..++.|..+-+.....+...-.++.+|+.++..+++.+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566665555555666666666666666666666666666666666666666665544
No 199
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.97 E-value=16 Score=39.81 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHH
Q 011839 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 251 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~s 251 (476)
++.+.+++-+|..++++..+.-+.+.++.-.+..+-..+..++..+|..|+.||.|-..+. .| .++ .+.+..-
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~-e~-----~v~-~~a~~~~ 80 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN-EE-----RVR-EEATEKT 80 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHH-HHHHHHH
Confidence 4455666666666666666666667777777777777777777777777777766555421 11 222 4444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 252 LRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 252 Lq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
+..++..++...--...+|..++++-.
T Consensus 81 ~t~~~~~~en~~~r~~~eir~~~~q~~ 107 (459)
T KOG0288|consen 81 LTVDVLIAENLRIRSLNEIRELREQKA 107 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555555555555555555555555444
No 200
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.96 E-value=31 Score=37.03 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=5.5
Q ss_pred CCceeeccCC
Q 011839 411 SGEIVQIPLD 420 (476)
Q Consensus 411 ~~eiv~~~ld 420 (476)
.|.|..|.-|
T Consensus 393 ~G~V~~Is~~ 402 (457)
T TIGR01000 393 DGTITSISSA 402 (457)
T ss_pred EEEEEEEcCC
Confidence 4566666544
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.90 E-value=20 Score=40.00 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhh------HhhH-H--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011839 79 QHLLQREAMAILEETVKHLRNERESHIQK------EATL-E--------GTVQQLQNECDLYKEKVQATLEETIQQLQRQ 143 (476)
Q Consensus 79 ~~~~q~e~~~~~eeti~~l~~e~d~~~~~------e~~~-E--------k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E 143 (476)
-..+||+-...|.+.+|-+++||....+| |++. + .-+++|++-++... ..++.|.+.-.+
T Consensus 153 ~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~-----s~~eel~~kt~e 227 (596)
T KOG4360|consen 153 RSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQAR-----SGQEELQSKTKE 227 (596)
T ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 35788888889999999999998764333 2221 1 12223332222221 122222333333
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
+.....+..+|.-.|.+++.+...+...+..+-+ .|+.-++ --..+..++..+.+.++...+.+.+.++.|+-
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~---~Lq~~~d----a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE---HLQAYKD----AQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444443333333322221 2222222 22567889999999999999999999999998
Q ss_pred H
Q 011839 224 L 224 (476)
Q Consensus 224 L 224 (476)
|
T Consensus 301 l 301 (596)
T KOG4360|consen 301 L 301 (596)
T ss_pred h
Confidence 8
No 202
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.74 E-value=34 Score=37.30 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 231 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W 231 (476)
...+.=-+++..+..+...++..|..+|.+-==+++.|.+.+..-...+++-+.|...+
T Consensus 410 sdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 410 SDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444456777888888999999999999999999999999888877788777776664
No 203
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=89.65 E-value=31 Score=36.65 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=32.3
Q ss_pred ccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011839 298 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 336 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~~ 336 (476)
+-+.|..+|....-|..-|.+|-.+|++++-.|.+.+.-
T Consensus 293 ~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 293 EYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 667888899999999999999999999999888664433
No 204
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.61 E-value=16 Score=33.31 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
...+..++..+...+......-..|.+++..++.++..+..++..+..++..+...
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555554444444444444443333
No 205
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.58 E-value=14 Score=37.05 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=17.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
|..++..+.+++.+-......+.-+-.+..-|+..|+.++.
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444445544433
No 206
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.54 E-value=23 Score=35.02 Aligned_cols=109 Identities=12% Similarity=0.234 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHH-HHHHHHHHHHHH
Q 011839 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-LQSEKEFWLQKE 193 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkq-Le~EIs~~~qEl 193 (476)
+..+...+......|+.-...+ +..--.....+...|..|+..+....+++......|.. ++..+......+
T Consensus 7 L~~i~e~~~~f~~~le~e~~~R-------r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v 79 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQR-------REQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERV 79 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444332222 33334456666777777777777777777665555433 233333333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 194 -AALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 194 -a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
..+......+......|..++..++..+..-+..|..
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~ 117 (247)
T PF06705_consen 80 ENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQ 117 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445555666666666666677776666655555554
No 207
>PRK10698 phage shock protein PspA; Provisional
Probab=89.54 E-value=23 Score=34.98 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI 158 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tI 158 (476)
-+.+++-.|+++++.+...++.+-...... +.++.+...+-...+..+.+.
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~-k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEK-KQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888765555555 555555555555444444443
No 208
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.47 E-value=22 Score=34.69 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=70.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-HHHHHHHHHHH
Q 011839 107 KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-LEMNIANLQSE 185 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~-LEeqIkqLe~E 185 (476)
-+.+++..|+++++.+...++.+-...... +.++.+++.+-...+..+.+. ....+.-.. |.... =.+
T Consensus 25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~-k~~e~~~~~~~~~~~~~~~~A-------~~Al~~G~EdLAr~A---l~~ 93 (219)
T TIGR02977 25 PEKMIRLIIQEMEDTLVEVRTTSARTIADK-KELERRVSRLEAQVADWQEKA-------ELALSKGREDLARAA---LIE 93 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCHHHHHHH---HHH
Confidence 456888899999999998888875555555 555555544444444444443 333332211 11111 114
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhh
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ 233 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLk 233 (476)
...+......+..+|..+......++.++..++.++..+++-++.+.-
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777777777777777666665433
No 209
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.35 E-value=25 Score=35.21 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQL 203 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL 203 (476)
..+..|+.+|.+++.+.......+..-......|
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~L 38 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEEL 38 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555544444433333333
No 210
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=88.97 E-value=19 Score=38.06 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=85.9
Q ss_pred HHHHHHHhHHHHHHHHHhhhhHHHH---------HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--
Q 011839 146 LRMQKEATLEETIKQLRNQNDLHIQ---------REGGLEMNIANLQSEKEFW-LQKEAALEQKISQLRDESAALNMK-- 213 (476)
Q Consensus 146 d~lQk~A~LE~tIKdLks~~es~~Q---------kea~LEeqIkqLe~EIs~~-~qEla~LepeiekL~~EeasLkQK-- 213 (476)
..+.++|.+|-+|..|+.-++.... ...-+-..|..|...++-+ ...+..+..++..|..+...+..+
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~ 285 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRK 285 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467999999999999999988222 1223445566666555533 123455555555554444443332
Q ss_pred ----HHhHHHHHHHHHHhhhhH--hhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 214 ----RASLEERLKLLEADKDSW--TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 214 ----LasLEeKL~~LKaERD~W--LkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
....+.|+..|+.=-..| +..-+ .+=.++ ..+..|=.+.......+..|+.....+...+..|...+..
T Consensus 286 ~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL----~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ 361 (388)
T PF04912_consen 286 EAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL----KTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNK 361 (388)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566777775554554 22222 222233 3345566666677777777888888888888888888877
Q ss_pred hhhhhh
Q 011839 287 DESKKL 292 (476)
Q Consensus 287 Leeei~ 292 (476)
++..+.
T Consensus 362 ve~~~~ 367 (388)
T PF04912_consen 362 VEEKFK 367 (388)
T ss_pred HHHHHH
Confidence 777754
No 211
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.93 E-value=5.4 Score=39.17 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 276 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lkeq 276 (476)
.+..++.++..|..++..++.+...+..+++.++..
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555443
No 212
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.77 E-value=0.79 Score=47.94 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..+...+..+|-.+..|..........-..|...|..+...+....-++..|...+..++...+.+
T Consensus 31 s~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~l-------------- 96 (326)
T PF04582_consen 31 SPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSL-------------- 96 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333444555555555555554444444444444444444444443333333333333333333222
Q ss_pred HHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 225 EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 225 KaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
...| ++...+......+..|+..|..++.++.++...+-.+--.|.+|+.|+..|+....
T Consensus 97 --------sssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 97 --------SSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred --------hhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence 2333 44445555555555566666666666666666666666666667777777776654
No 213
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.68 E-value=28 Score=34.79 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=28.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
+++..+..+...+..+...+..|+..+..|...|.+++.+...+.-+.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666666666666665555543333
No 214
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.64 E-value=14 Score=31.85 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 258 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~ 258 (476)
.|+-.|+..|..+..........+..+|.++..|..|+..-=++--...+....+..++..|..++..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46667777777787777777777777777777776666553223224444444444444444444443
No 215
>PF13166 AAA_13: AAA domain
Probab=88.55 E-value=46 Score=37.22 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=10.5
Q ss_pred CCCcCCCchhHH-HHHHhhcccc
Q 011839 446 DAPLIGAPFRLV-SFVAKYVSGA 467 (476)
Q Consensus 446 dapligapfrli-sfva~yvsga 467 (476)
.+..||-.-|-| -...+|.-|.
T Consensus 632 ~~~~~~N~~RriLE~yf~~~~~~ 654 (712)
T PF13166_consen 632 SAYNIPNVMRRILEAYFKFPGKI 654 (712)
T ss_pred hHHhhHHHhHHHHHHHHhhCCCC
Confidence 455666555532 2225554443
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.49 E-value=41 Score=39.16 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839 306 IEAAGALIDKLITENIELVEKVNDL 330 (476)
Q Consensus 306 ie~a~~~v~kl~~en~~l~ekvneL 330 (476)
+-++.-.-+|.++=|......--++
T Consensus 300 L~~~rdep~kv~~l~~q~w~r~qq~ 324 (916)
T KOG0249|consen 300 LKALRDEPEKVQTLNEQEWARDQQA 324 (916)
T ss_pred HHHhhhchHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666543333
No 217
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.43 E-value=34 Score=36.57 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=20.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
-|..+..++..|+.++..+..+..+.+++.++|...+++-....+.|-.+
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444333333333333
No 218
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.41 E-value=28 Score=34.53 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=21.3
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
.|.+.+..+..++.+|......+....+....+|..+-..+.
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555554444433
No 219
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.33 E-value=18 Score=39.34 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
.++.+|...+-...++...+-++..-++.+......++...+.++..|++++..+......
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433333344444444444455555555555555555555555555555544443
No 220
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.26 E-value=8.4 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 011839 108 EATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
.......+.+|+.++..++.+|
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l 109 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKL 109 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666554
No 221
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.06 E-value=45 Score=36.55 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQN 165 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~ 165 (476)
+||+.|++.+++..+.+|.+++.+.+..
T Consensus 302 rqlqrdlE~~~~~r~ele~~~~qs~ed~ 329 (542)
T KOG0993|consen 302 RQLQRDLEELIETRAELEHTEQQSQEDI 329 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5777777777777777777777776643
No 222
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.88 E-value=49 Score=36.72 Aligned_cols=175 Identities=18% Similarity=0.171 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q 191 (476)
+-.|+.|+-.+..+..+++.+.-...+| .-++--+.+|+..|.+|=+..=.-+=.+...+.++..|+...+.-..
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQ-----qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk 404 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQ-----QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQK 404 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544433222111 11223445556666666555555555566666777777666554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHH----HHHH
Q 011839 192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESR----NNLL 267 (476)
Q Consensus 192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~----s~Le 267 (476)
.|..-..+-+.|.=+...++.....|+++-..--..|+..+..=+.+.+.++.....+..|+.--..|+... +-|.
T Consensus 405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLk 484 (527)
T PF15066_consen 405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLK 484 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334334444444445555554444556677777777777777777666666665554544332 2222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 268 QENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 268 eEIq~LkeqIseLqs~lqeLeeei 291 (476)
.|-......+=.|+..++..+.+.
T Consensus 485 rEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333334444444444433
No 223
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=87.76 E-value=1.1 Score=47.05 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHH
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQ 251 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~s 251 (476)
..|+..+..|..-+.....+++.|...+..+....+.+.-.|..+...+..|+ ..+ .+...|+.+...+..
T Consensus 38 saLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq--------~Sl~~lsssVs~lS~~ls~ 109 (326)
T PF04582_consen 38 SALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQ--------SSLSSLSSSVSSLSSTLSD 109 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHhhhhhhhh
Confidence 33455555666666666666666666666666666666666666665555443 356 777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 252 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 252 Lq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
....|..|+.....+...+..|+..++....+|..|+.++.
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 77778888888888888888888888888888888887775
No 224
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.75 E-value=80 Score=38.99 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=17.7
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011839 105 IQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRM 148 (476)
Q Consensus 105 ~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~l 148 (476)
...-.++...++.+++++....-++.....+. .++..+.++..
T Consensus 725 ~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el-~~~~~~~e~~~ 767 (1294)
T KOG0962|consen 725 LKLKPTFGSIIKLIDKEIPELEKELQEVYEEL-GDLSEEEEDDE 767 (1294)
T ss_pred HhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhhhhhhhHHH
Confidence 33333444444444445444444443322222 44444444333
No 225
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.58 E-value=7.8 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
...+..|...++.++..+..+......++.++.+++..++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555443
No 226
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.45 E-value=28 Score=33.47 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H
Q 011839 145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-L 223 (476)
Q Consensus 145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~-~ 223 (476)
..+=|.+..++..|.+++.........+..++.++..++..+..|.. +.. .
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~----------------------------~A~~A 77 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK----------------------------QAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHH
Confidence 34444444555555555555555555555555555555555444443 333 2
Q ss_pred HHHhhhhH----hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 224 LEADKDSW----TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 224 LKaERD~W----LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
|..+++.+ |..-..+...+..+...+..+..++..|+..+..+...+..++.+...+..+...-.
T Consensus 78 l~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 78 LAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332 222225556666666666666666666666666666666666666665554444333
No 227
>PF13514 AAA_27: AAA domain
Probab=87.25 E-value=75 Score=38.15 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
..+..++..++.++..+..++..+...+..++.++..+..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555666666666655555555555544
No 228
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.23 E-value=27 Score=35.84 Aligned_cols=114 Identities=22% Similarity=0.207 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E 185 (476)
+.+++|-.+|...=-+|=.+|... -.+...+...+. -+..+...|+.+..+.....+.-..+...-+.|+..
T Consensus 120 k~~R~Laseit~~GA~LydlL~kE-~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~K 198 (267)
T PF10234_consen 120 KAARQLASEITQRGASLYDLLGKE-VELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAK 198 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhch-HhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777666666655555 355555555555 333444455555555555555556666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
|..+.+++.+...++..|+...=++......+|++++.|+..
T Consensus 199 Iekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 199 IEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777778888888777443
No 229
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.10 E-value=23 Score=31.99 Aligned_cols=85 Identities=25% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
+..+--..+.++..|...+..++-....+..|...+..|+....+..+.++.|..+|..+...... .|++.++-.-+.
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~ 88 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRL 88 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333344444455555555555555555555555555555555555555555555555555544444 333333333333
Q ss_pred HHHhhhh
Q 011839 224 LEADKDS 230 (476)
Q Consensus 224 LKaERD~ 230 (476)
+++++|.
T Consensus 89 ~k~~~dk 95 (107)
T PF09304_consen 89 LKAQKDK 95 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 4444443
No 230
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.96 E-value=10 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
+.+|+......+-.++-++..|.+|+.++.+..|....+......|+++...
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq 57 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666665555555444444444444443
No 231
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=86.82 E-value=33 Score=33.69 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhh
Q 011839 86 AMAILEETVKHLR 98 (476)
Q Consensus 86 ~~~~~eeti~~l~ 98 (476)
..+.++.|+..|.
T Consensus 19 ~i~~l~~al~~L~ 31 (240)
T PF12795_consen 19 LIQDLQQALSFLD 31 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 232
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.52 E-value=31 Score=34.01 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011839 313 IDKLITENIELVEKVNDLSVKLDRQSV 339 (476)
Q Consensus 313 v~kl~~en~~l~ekvneL~~~l~~~~~ 339 (476)
.+.|+.||.+|+| ||.-||....
T Consensus 124 q~~L~rEN~eLKE----lcl~LDeer~ 146 (195)
T PF10226_consen 124 QEELIRENLELKE----LCLYLDEERP 146 (195)
T ss_pred HHHHHHhHHHHHH----HHHHHhcccc
Confidence 4678999999995 9999998883
No 233
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=86.39 E-value=4.1 Score=43.06 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc-----ccchhhhHHHHHHhHHHHHHH
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-----EQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~-----~~e~~~~qie~a~~~v~kl~~ 318 (476)
++..-+..+...|..++..+..+...++.+...+..+...+..|+...-..... |.++- +---++.++++++.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e~--~~k~~~~~l~~ii~ 218 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEEE--EGKGPENFLEEIIP 218 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCccc--cccCHHHHHHHHHH
Confidence 445555666666666666667777777777777777777777777777655443 33221 23346788999999
Q ss_pred HHH-HHH
Q 011839 319 ENI-ELV 324 (476)
Q Consensus 319 en~-~l~ 324 (476)
+|- .|.
T Consensus 219 e~~p~L~ 225 (370)
T PF02994_consen 219 ENFPNLP 225 (370)
T ss_dssp HH-CHHH
T ss_pred HhCcCcc
Confidence 874 343
No 234
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.36 E-value=43 Score=34.48 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
.=++..|..|+.++..+..++. .+.++|.+++.+...+-++++.++.+|.+.+.
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~-~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKID-ELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666632 24444455555555555555555555544443
No 235
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.31 E-value=58 Score=37.47 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA---NLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk---qLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
..+..++..+.........++.+..............|++.+. .++..+.........+..++..|+.+-..+++.+
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544445555544444444444444554433 3444444444444444444555555555554444
Q ss_pred HhHHHHHHHH
Q 011839 215 ASLEERLKLL 224 (476)
Q Consensus 215 asLEeKL~~L 224 (476)
..+......+
T Consensus 258 ~~l~~~~~~~ 267 (670)
T KOG0239|consen 258 KELNDQVSLL 267 (670)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 236
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.19 E-value=48 Score=34.88 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=14.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHH
Q 011839 107 KEATLEGTVQQLQNECDLYKEKVQA 131 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~lkqkLE~ 131 (476)
.-..++..+.+++.++.....+|+.
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666555544
No 237
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.16 E-value=30 Score=32.46 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
|..|+.-+....+-++-+..++..+..+...++..+.
T Consensus 65 L~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~ 101 (177)
T PF13870_consen 65 LLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELK 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333333333
No 238
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.64 E-value=19 Score=34.81 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHH----HHHH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE----SRNN 265 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Lee----e~s~ 265 (476)
.+....+...+.+|..+...+..++..++.++..++.+|...-... .+-..+..+...+..|+.++..+.. .+..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3444566666777777777777777777777777766666620000 2223344444444444444443322 3344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqeLee 289 (476)
+..++..+++.++.|...|-.|..
T Consensus 140 ~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444555555555555554444443
No 239
>PLN02939 transferase, transferring glycosyl groups
Probab=85.59 E-value=58 Score=39.07 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhh
Q 011839 317 ITENIELVEKVNDLS 331 (476)
Q Consensus 317 ~~en~~l~ekvneL~ 331 (476)
+.+|++|..||..|-
T Consensus 323 ~~~~~~~~~~~~~~~ 337 (977)
T PLN02939 323 LDQNQDLRDKVDKLE 337 (977)
T ss_pred hccchHHHHHHHHHH
Confidence 456666666665553
No 240
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.49 E-value=60 Score=36.48 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhHhhhhh
Q 011839 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES 236 (476)
Q Consensus 184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L---KaERD~WLkkEI 236 (476)
..+.....+++....++..+.+++..|.-.++.+..|++-+ +.+++..|+.-+
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566666677777788888888888888877 666666555443
No 241
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.37 E-value=77 Score=36.53 Aligned_cols=185 Identities=17% Similarity=0.177 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
++.++...+..+++..|..|..+.+|-..++-.---.. +....-...++.+..|.|.++.|..+.+.=...+.
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-------~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~ 127 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-------ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFK 127 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777777777777777665432211111 00011115566677777777777777777777777
Q ss_pred hHHHHHHHH---HHhh----hhHhhhhhchH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 011839 216 SLEERLKLL---EADK----DSWTQMESVSK-ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS----- 282 (476)
Q Consensus 216 sLEeKL~~L---KaER----D~WLkkEIsLk-e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs----- 282 (476)
.+-.++..| -++. ..++-.+-++- +.+ ..++.++..|+.++..-.+++..++..|..+-.
T Consensus 128 el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kL-------eelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~ 200 (660)
T KOG4302|consen 128 ELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKL-------EELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD 200 (660)
T ss_pred HHHHHHHHHHHHhcCCccCCcccccCcccccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777766 2222 22222333222 333 445555555555555555555555555554422
Q ss_pred ---hhhhhhhhhhhhhh-cccchhhhHHHHHHhHHHHHHHHHH-------HHHHhhhhhhhhh
Q 011839 283 ---QLSSDESKKLQHAT-SEQKDFSTQIEAAGALIDKLITENI-------ELVEKVNDLSVKL 334 (476)
Q Consensus 283 ---~lqeLeeei~~~~~-~~~e~~~~qie~a~~~v~kl~~en~-------~l~ekvneL~~~l 334 (476)
-+..++.....+.- -..-..+.-++..|.+|.+|-.+=- +|..++-+|--.|
T Consensus 201 ~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 201 FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22333333322210 0123445566666666666655443 4444444444433
No 242
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.17 E-value=9.3 Score=31.56 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es 167 (476)
|+..|..|+..++.+.+++++.-.+- +.|..+++.++......=..+.+|+.+++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~-k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIEN-KRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666654433333 555555555555555555555555554443
No 243
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.83 E-value=8.7 Score=31.66 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
..++.++..|+.++..+..+...|.+.+..-+.+|..+.+++..++.
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34556666777777777777777777777777777777777766654
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.71 E-value=13 Score=42.06 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=6.1
Q ss_pred ccccchHHHHHHH
Q 011839 68 AESANLAEAERQH 80 (476)
Q Consensus 68 ~~~~~~~e~~~~~ 80 (476)
|+.+.|+| ||+.
T Consensus 318 P~~dLsve-EK~~ 329 (652)
T COG2433 318 PDRDLSVE-EKQE 329 (652)
T ss_pred CcccCCHH-HHHH
Confidence 55555555 3444
No 245
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.51 E-value=49 Score=38.56 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=19.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
.+..|.++..++..++..+...++.+-..+..|+..++.|.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 246
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.06 E-value=91 Score=36.24 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.|..+-..|...+.+|.+..+.|-.-..-|.-+++.|
T Consensus 239 ~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 239 AWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666767777777777777777766666666666655
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.68 E-value=5.3 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqeLee 289 (476)
+...|.+|...+..+..++..|..
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444
No 248
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.58 E-value=50 Score=35.67 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011839 92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET 136 (476)
Q Consensus 92 eti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEk 136 (476)
.-|+.|..+.+.|+|--+-=......|+.+-..+++.++--..++
T Consensus 118 Kli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~ 162 (561)
T KOG1103|consen 118 KLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEK 162 (561)
T ss_pred HHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999876555555556665555555555444443
No 249
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=83.43 E-value=27 Score=31.40 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+...+.-|...+..|+..+..+...+..++.++..+...++.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555443
No 250
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.32 E-value=58 Score=33.43 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
.+..+--.+..+..++..-...++.+.++|..|+..+..|+.+..+...-++
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF 231 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhh
Confidence 3333445566777778888888888888888888888888777776666554
No 251
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.27 E-value=5.5 Score=38.75 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=43.1
Q ss_pred hhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 229 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR--NNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 229 D~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~--s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+.-|..+| .+++.+.++.+++..+..+|..|.+-+ ..+.++|++|+..+...+.+|.+++.-.
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666 666677777777777777777777743 4577777777777777777777777544
No 252
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=83.12 E-value=85 Score=35.23 Aligned_cols=106 Identities=14% Similarity=0.269 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 197 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
...+..+.+...++.+.+.++..+....+++=|.-+-.|- .....|..++++++.+..++..+...--+ ..|.+.+.
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg 488 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQG 488 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHH
Confidence 3444455555556666666666666666777777666666 67777777777777777777777665444 22444444
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhhhHH
Q 011839 276 NVSSLRSQLSSDESKKLQHATSEQKDFSTQI 306 (476)
Q Consensus 276 qIseLqs~lqeLeeei~~~~~~~~e~~~~qi 306 (476)
++. ..+|-+|++.+.-.-+.-+-.|++.+
T Consensus 489 ~l~--~~qi~kle~siq~nKtiqn~kfntEt 517 (531)
T PF15450_consen 489 KLA--TNQIMKLENSIQTNKTIQNLKFNTET 517 (531)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhcccchHH
Confidence 444 56666666666433333333444333
No 253
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=83.00 E-value=35 Score=30.75 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=19.1
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+.+-+.-++..+..|...+..+...+..+...++.+...+..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 254
>PF13166 AAA_13: AAA domain
Probab=82.99 E-value=86 Score=35.15 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 254 ~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
.++..++..+..+...+..+...+..+...+..++...
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 255
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.92 E-value=44 Score=31.82 Aligned_cols=94 Identities=21% Similarity=0.311 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011839 185 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR 263 (476)
Q Consensus 185 EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~ 263 (476)
+.....+++..++.++...-.+.+.|.......-.+|...-..-+.+...+| .--+.-..+...+..++.+...|...+
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333333333333344445666 666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 011839 264 NNLLQENRQLKENVS 278 (476)
Q Consensus 264 s~LeeEIq~LkeqIs 278 (476)
+.|+.....+...|.
T Consensus 108 D~LErrl~~l~~tie 122 (159)
T PF05384_consen 108 DELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666666655554
No 256
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.81 E-value=60 Score=34.57 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
...+..-|+.+..+++.+.+++...+.++.
T Consensus 289 y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 289 YKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 257
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=82.79 E-value=93 Score=35.40 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 77 ERQHLLQREAMAILEETVKHLRNER 101 (476)
Q Consensus 77 ~~~~~~q~e~~~~~eeti~~l~~e~ 101 (476)
.|.+..+++.....-+++++|.++.
T Consensus 347 ~r~~e~~kd~~~~~~~~~~~~~~sl 371 (607)
T KOG0240|consen 347 KRKLEKKKDKNVALKEELEKLRNSL 371 (607)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666553
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.72 E-value=18 Score=41.04 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=7.5
Q ss_pred ceeeccCCCccchhhhhh
Q 011839 413 EIVQIPLDDKEVQDLELQ 430 (476)
Q Consensus 413 eiv~~~ld~~~~~~~~~q 430 (476)
+|=-+|-+|-+|--++-+
T Consensus 590 ~iPv~~~~dV~i~~ld~~ 607 (652)
T COG2433 590 EIPVLPEGDVQIIRLDEF 607 (652)
T ss_pred CCceeecCceEEEEecce
Confidence 333344444444444333
No 259
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.55 E-value=84 Score=34.71 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=14.9
Q ss_pred CceeecCCCCCCCCCccCCccc
Q 011839 24 DDVAVGADPNHLINGQKDDVRS 45 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (476)
.+++|+....|+..++..++..
T Consensus 105 ~~~svg~es~hn~se~~tD~et 126 (502)
T KOG0982|consen 105 SNISVGKESMHNLSEQLTDNET 126 (502)
T ss_pred cccccccccccccccCCCCCcc
Confidence 4677777777777777666543
No 260
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=82.41 E-value=33 Score=29.92 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=40.5
Q ss_pred hHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 166 DLHIQREGGLEMNIANLQSEKE-FWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 166 es~~Qkea~LEeqIkqLe~EIs-~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
+.|.+..+.++.+++-|+.... .|..++..|..++..|..++..|+.++..-
T Consensus 23 eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 23 ELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999998887776 677777888888888888887777766644
No 261
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=82.01 E-value=57 Score=35.81 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhh
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 235 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkE 235 (476)
..++..+......++..+..+++.+..++..+...|..++.+-.+|-.+.+.+.+.-
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey 234 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREY 234 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666667777777777777777777777777776655555544333
No 262
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.44 E-value=42 Score=30.54 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKV 129 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkL 129 (476)
-.|++++-|+..++..+
T Consensus 23 s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 23 SQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 263
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.24 E-value=36 Score=35.20 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-------hhcccchhhhHHHHHHhHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH-------ATSEQKDFSTQIEAAGALI 313 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~-------~~~~~e~~~~qie~a~~~v 313 (476)
.++.++.++..++.++..+......-.-.+..++.++..++.++......+... ...+.+.|..+.+.|..+.
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y 294 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQL 294 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443222224455666666666666666655554322 1226677888888888888
Q ss_pred HHHHH
Q 011839 314 DKLIT 318 (476)
Q Consensus 314 ~kl~~ 318 (476)
+.++.
T Consensus 295 ~~~l~ 299 (362)
T TIGR01010 295 KAALT 299 (362)
T ss_pred HHHHH
Confidence 87777
No 264
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=81.13 E-value=40 Score=38.38 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHH
Q 011839 181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 260 (476)
Q Consensus 181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Le 260 (476)
+++..+.....+++.++.++.. ...+...|+.....|...|+.|+..|+.-=-.+..++- .|...+...-
T Consensus 375 ~~~~~~~~~~~~l~~le~~l~~-------~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L---~l~~dv~~A~ 444 (656)
T PRK06975 375 QAQASVHQLDSQFAQLDGKLAD-------AQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQL---QLTGNVQLAL 444 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH---HHhCCHHHHH
Confidence 3333344444444444444444 34444555555666677889999999833333333221 2222333222
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHhhhhhhhhh---hhhhhcccchhhhHHHHHHhHHHHHHH
Q 011839 261 ESRNNLLQENRQLKENVS--SLRSQLSSDESKK---LQHATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 261 ee~s~LeeEIq~LkeqIs--eLqs~lqeLeeei---~~~~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
.-+.+.+ .....++ .+-.-++.|...+ ......+...+-.+++++..-|+.|--
T Consensus 445 ~~L~~AD----~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~Lpl 503 (656)
T PRK06975 445 IALQNAD----ARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDALPL 503 (656)
T ss_pred HHHHHHH----HHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhCcC
Confidence 2222222 2222222 1222222222222 112223666777778888888888765
No 265
>PRK12704 phosphodiesterase; Provisional
Probab=81.11 E-value=97 Score=34.50 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.9
Q ss_pred HHhHHHHHHH
Q 011839 309 AGALIDKLIT 318 (476)
Q Consensus 309 a~~~v~kl~~ 318 (476)
|.-.+++|+.
T Consensus 266 a~~~l~~l~~ 275 (520)
T PRK12704 266 ARLALEKLVQ 275 (520)
T ss_pred HHHHHHHHHh
Confidence 4445555543
No 266
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.09 E-value=1.5e+02 Score=36.73 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=73.3
Q ss_pred HHHHHHHhhhhhhh---hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839 90 LEETVKHLRNERES---HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 90 ~eeti~~l~~e~d~---~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
.+-+|--+.-+-++ .|+...=+...-+.++.+...+...++.+..+.| +....+...-.+-.+.+.+.....
T Consensus 800 ~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~-----~~~~~i~~l~~~~~e~k~~~~~~~ 874 (1294)
T KOG0962|consen 800 REKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVI-----EQEREISRLINLRNELKEEKQKIE 874 (1294)
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554 4677666777777888888888887766555553 334444455555566666777777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 167 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (476)
Q Consensus 167 s~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eea 208 (476)
...+....+++.+..|+..+....+++..+.+.+.-+.....
T Consensus 875 ~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~ 916 (1294)
T KOG0962|consen 875 RSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE 916 (1294)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH
Confidence 777777788888888888887666666666555554444433
No 267
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.04 E-value=73 Score=33.05 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHH---HH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN---NL 266 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s---~L 266 (476)
-+.++.|+-++.+++....++..-+..||..=..|...+-. ...++...-+.|++.|. ....|++++. .+
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa---ti~sleDfeqrLnqAIE----rnAfLESELdEke~l 162 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA---TIYSLEDFEQRLNQAIE----RNAFLESELDEKEVL 162 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh---hhhhHHHHHHHHHHHHH----HHHHHHHHhhHHHHH
Confidence 34445555555556666655555555555555555222222 23366666566655554 3445555443 35
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011839 267 LQENRQLKENVSSLRSQ 283 (476)
Q Consensus 267 eeEIq~LkeqIseLqs~ 283 (476)
.++++-|++..-.|+..
T Consensus 163 lesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQE 179 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666655555433
No 268
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.87 E-value=1.1e+02 Score=34.86 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 209 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eeas 209 (476)
..+..+..+++|++.-.+....-..+..+|+.|+-.+.+...+...|..++.+.++....
T Consensus 353 ~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 353 ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 344556667777776666666666777888888888888888888888888888776643
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.59 E-value=54 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
|+..||.-+.+=.+--..----....+..|+.++..++..+
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v 43 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEV 43 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666554443322222223344555555555555554
No 270
>PRK11519 tyrosine kinase; Provisional
Probab=80.07 E-value=1.2e+02 Score=34.82 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011839 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (476)
Q Consensus 134 qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es 167 (476)
...+.-|+.+...+-++....|..+.+|+.++..
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444667777777777888888888888876654
No 271
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.01 E-value=51 Score=35.08 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
..++..+..++..+-.+......+++.+..+|..+..-...+...|+.+.+++.+.|.+=+.
T Consensus 258 ~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 258 ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777888888888888888888888888888888888888877655444
No 272
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=79.77 E-value=37 Score=28.86 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
+.+..++.|++.+.+.+......+ ...+......++....+.-++-+|+.. |..-+..-+++|.+|+.+++
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~-~e~e~ki~~Qi~Em~~ir~~v~eLE~~---h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQK-DEYEHKINSQIQEMQQIRQKVYELEQA---HRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555555 666666666666667777777777663 44445555666666666554
No 273
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=79.41 E-value=71 Score=31.93 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
.+++.-|++.+.++..+.+.+....-.. ++++.+++.......+++..-..--....-.+-+ ..-.++..|+.....
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~-k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQ-KQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHH
Confidence 8899999999999999999987766666 8888888888887777777665543333322222 134556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
+.+.+........+|......|..++..+..+...|++.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777777777777777766666543
No 274
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.37 E-value=62 Score=31.24 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=6.7
Q ss_pred hhh-chHHHHhhhHHH
Q 011839 234 MES-VSKETIAGLSVD 248 (476)
Q Consensus 234 kEI-sLke~IssL~~~ 248 (476)
.|| .|+.....++..
T Consensus 170 ~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 170 EEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 444 444444444443
No 275
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=79.35 E-value=14 Score=30.93 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 195 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE 261 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Lee 261 (476)
..+..|..|..+|=.|+-++-.+++++..+-.+...-+.++. .|+-.+.++..++..++..+..++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889988999999998888865333333233332 5555555554444444444444443
No 276
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=78.98 E-value=1.2e+02 Score=34.17 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHH
Q 011839 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE 319 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~e 319 (476)
.++..|...+...++++..+..++... ..++..|+.+.......=.+-|+.=.|-.|++.++|...
T Consensus 441 ~Ec~aL~~rL~~aE~ek~~l~eeL~~a-------~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 441 AECRALQKRLESAEKEKESLEEELKEA-------NQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444 444444444443332223344555567778888888763
No 277
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=78.71 E-value=1.1e+02 Score=33.72 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011839 81 LLQREAMAILEETVKHLR----NERESHIQKEATLEGTVQQLQNECDLYKEK 128 (476)
Q Consensus 81 ~~q~e~~~~~eeti~~l~----~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqk 128 (476)
=+|..+...+.+.+.-|+ .+.+..|....++-+.+-.+......+...
T Consensus 151 ~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~ 202 (511)
T PF09787_consen 151 RLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEER 202 (511)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444467777776655 345556777777666666655544444444
No 278
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.10 E-value=73 Score=31.32 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 011839 201 SQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 201 ekL~~EeasLkQKLasLEeKL~ 222 (476)
+.+...-....+.+..+...+.
T Consensus 116 ~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 116 ERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444443
No 279
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=78.09 E-value=77 Score=31.56 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 191 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~q 191 (476)
+..-.++++.+..+..+|+-..+=. ...+..++...++.+-+|-.+......-+.....=..|++.++.+.+.......
T Consensus 52 enr~~kdEE~~e~~e~qLkEAk~ia-E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 52 ENRAQKLEEKMEAQEAQLKEAKHIA-EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3334444545544444443332222 345556777788888888777777776666666666666666666555444333
No 280
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.78 E-value=62 Score=30.79 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 011839 194 AALEQKISQLRDES 207 (476)
Q Consensus 194 a~LepeiekL~~Ee 207 (476)
..|-|.+-...+.-
T Consensus 25 ~~LmP~VV~vLE~L 38 (158)
T PF09744_consen 25 KGLMPKVVRVLELL 38 (158)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444443333333
No 281
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.67 E-value=60 Score=33.44 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
.+++.....+...++.++.+|+.-+.+++ ..+.++..|++.-=.+--|...++.++.+|=+..-.-=..++-|
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekkk~ELE-------R~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKKKQELE-------RNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44445555555556666666666555544 44556777777777777888888888888877776655566666
Q ss_pred HHHHHHH
Q 011839 218 EERLKLL 224 (476)
Q Consensus 218 EeKL~~L 224 (476)
|..+...
T Consensus 252 e~qle~~ 258 (267)
T PF10234_consen 252 EHQLEEY 258 (267)
T ss_pred HHHHHHH
Confidence 6665544
No 282
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.25 E-value=47 Score=28.67 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
+.+...........+.+|.++..|..+....-|+-.....-+..|..++.....-++.-..-+.+|.+-+..+..++..+
T Consensus 13 ~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 13 KELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555566666666666555555555554444555555554444444444444444444444444444444
No 283
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.16 E-value=33 Score=34.92 Aligned_cols=28 Identities=14% Similarity=0.404 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
+..++.++..+++....+|.....+++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556665555555555555444
No 284
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.74 E-value=19 Score=33.52 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=30.4
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhhhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQE--NRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeE--Iq~LkeqIseLqs~lqeLeeei~ 292 (476)
.+...|..+..++..|..++..|+.++..|..+ +.+|...|..+...+..++..+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555443 24555556666666666655553
No 285
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.64 E-value=1.4e+02 Score=33.93 Aligned_cols=15 Identities=20% Similarity=-0.073 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHH
Q 011839 310 GALIDKLITENIELV 324 (476)
Q Consensus 310 ~~~v~kl~~en~~l~ 324 (476)
.++|-|+-+||+-++
T Consensus 590 ~~~~~k~~~ev~~~~ 604 (654)
T KOG4809|consen 590 NETVTKGSTEVTLAE 604 (654)
T ss_pred hhHHHhhHHHHHHHH
Confidence 456777777776665
No 286
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=76.61 E-value=1.8e+02 Score=34.93 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhH
Q 011839 78 RQHLLQ-REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK--VQATLEETIQQLQRQNDLRMQKEATL 154 (476)
Q Consensus 78 ~~~~~q-~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqk--LE~llqEkIkQLq~E~~d~lQk~A~L 154 (476)
||+|.| |-+|++++.-+..|... .-+-|+--..-+.++++=++++=-+ +.--....|-.+=.++...+|+++.|
T Consensus 556 rq~~~~~r~~ld~leaa~e~lE~r---~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL 632 (984)
T COG4717 556 RQHWQQLRKALDQLEAAYEALEGR---FAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAEL 632 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667764 78899999888887654 1222333333333333333332111 11112222233334555566666666
Q ss_pred HHHHHHHHhhhhHHHHHhhh
Q 011839 155 EETIKQLRNQNDLHIQREGG 174 (476)
Q Consensus 155 E~tIKdLks~~es~~Qkea~ 174 (476)
......|.....+-..+-+.
T Consensus 633 ~~q~~~L~ee~~af~~~v~~ 652 (984)
T COG4717 633 THQVARLREEQAAFEERVEG 652 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444444333
No 287
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.55 E-value=1.1e+02 Score=32.39 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEET 136 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEk 136 (476)
-+.-+|-.|+.++...-..-.+....|+.|..+|..+... -+.++.+
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~-sv~~~~~ 70 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA-SVRIQAK 70 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3445555566666555555555556666666666666665 4444444
No 288
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.53 E-value=17 Score=40.04 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHH
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
=+.+++.|-.+++.++.++..+..+|+.|+++-+.|+.+.++++..+..+..++..++..+++++..-+.++..
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34577788888999999999999999999999999999999999999877666666777676666555544433
No 289
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=76.40 E-value=1.5e+02 Score=34.03 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
..++...+..+-++.-..+.. . ...++.-|+.+...+-++....|..+.+|+.+++
T Consensus 243 a~ilN~la~~Yi~~~l~~k~~--~-a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~ 298 (726)
T PRK09841 243 TRILNSIANNYLQQNIARQAA--Q-DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRD 298 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444442222222 2 2334477888888888888888888888888763
No 290
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.13 E-value=40 Score=33.78 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
.+...+.+...|+.|.+.+..+.+.+.++.+.|++++.
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555555555555555555543
No 291
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=75.80 E-value=1.4e+02 Score=33.53 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 201 SQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 201 ekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~-sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
.-|...++.+.+.+..|..++-.|...=|. +|-.|...|+.....+. ..+..+..+-.=.+.+......+++.+++
T Consensus 347 qile~sv~~l~~~lkDLd~~~~aLs~rld~---qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~ 423 (531)
T PF15450_consen 347 QILEDSVAELMRQLKDLDDHILALSWRLDL---QEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDS 423 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555555544333222 33344444444433222 11111222222222233333444444555
Q ss_pred HHHhhhhhhhhhh
Q 011839 280 LRSQLSSDESKKL 292 (476)
Q Consensus 280 Lqs~lqeLeeei~ 292 (476)
+-.+|..+...+.
T Consensus 424 LpqqI~~vs~Kc~ 436 (531)
T PF15450_consen 424 LPQQIEEVSDKCD 436 (531)
T ss_pred hhHHHHHHHHHHH
Confidence 5555555555543
No 292
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.63 E-value=1.1e+02 Score=34.23 Aligned_cols=86 Identities=10% Similarity=0.048 Sum_probs=36.6
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 011839 101 RESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 180 (476)
Q Consensus 101 ~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk 180 (476)
+-+.+|.=+.-..-|+.+.+.+.+|. +..+..--+|.+++..+-++...+-++=.++.=|+..--...-.|+.|..++.
T Consensus 343 ~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kld 421 (508)
T KOG3091|consen 343 LKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLD 421 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHH
Confidence 33444444444455555555555555 43444444444444444444433333333333333332223333344444444
Q ss_pred HHHHHHH
Q 011839 181 NLQSEKE 187 (476)
Q Consensus 181 qLe~EIs 187 (476)
.|..++.
T Consensus 422 tll~~ln 428 (508)
T KOG3091|consen 422 TLLAQLN 428 (508)
T ss_pred HHHHHhc
Confidence 4444443
No 293
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.41 E-value=24 Score=38.90 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
-.++|+.|=........++..+..+=+.|+.+|..|+++...+..+++
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345555555555555566666666666666666666666655544444
No 294
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.11 E-value=37 Score=32.80 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhh
Q 011839 142 RQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 142 ~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
.+|...+.....++..++.|+.+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554444
No 295
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.99 E-value=14 Score=33.01 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=38.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
+-..|..+.+.+..|..++..|+..+..+.+||..|+-.-..|+.++..+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777777777777888888887777777777777665
No 296
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=74.87 E-value=1.1e+02 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
-+.|+.-|.+|..++..-+.-+.+.-.+.++|-+-|.+..++|..|+.|=+.
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~ 124 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVK 124 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999776555
No 297
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.52 E-value=50 Score=27.64 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=21.1
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
...-+..+......+..++..++..+..+..++..++..+.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544443
No 298
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.48 E-value=2.3e+02 Score=35.23 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.5
Q ss_pred cccCCCCCCCc
Q 011839 58 VDADRHQSNGA 68 (476)
Q Consensus 58 ~~~~~~~~~~~ 68 (476)
|+.||+-..|+
T Consensus 708 v~~dG~~r~G~ 718 (1353)
T TIGR02680 708 IDVDGRFRLGV 718 (1353)
T ss_pred ECCCCceeeee
Confidence 67777776663
No 299
>PRK00106 hypothetical protein; Provisional
Probab=74.21 E-value=1.2e+02 Score=34.18 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=6.9
Q ss_pred HHHHhHHHHHHH
Q 011839 307 EAAGALIDKLIT 318 (476)
Q Consensus 307 e~a~~~v~kl~~ 318 (476)
|-|.-.+++|+.
T Consensus 279 eiAr~~le~Li~ 290 (535)
T PRK00106 279 EIARMTLESLIK 290 (535)
T ss_pred HHHHHHHHHHHH
Confidence 345556666664
No 300
>PRK11519 tyrosine kinase; Provisional
Probab=74.19 E-value=81 Score=36.10 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhh--cccchhhhHHHHHHhHHHHHHH
Q 011839 271 RQLKENVSSLRSQLSSDESKKLQHAT--SEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 271 q~LkeqIseLqs~lqeLeeei~~~~~--~~~e~~~~qie~a~~~v~kl~~ 318 (476)
+.++.++..++.++..++.++..... .+...|..+.+.+..+.+.|++
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~ 391 (719)
T PRK11519 342 RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLN 391 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444322211 1344566677777777777766
No 301
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.82 E-value=78 Score=36.25 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh--hcccchhhhHHHHHHhHHHHHHH
Q 011839 269 ENRQLKENVSSLRSQLSSDESKKLQHA--TSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 269 EIq~LkeqIseLqs~lqeLeeei~~~~--~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
.++.++.++..++.++..+..++.... ..+.-.|..+.+.+..+-+.|++
T Consensus 340 ~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~ 391 (726)
T PRK09841 340 TYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLN 391 (726)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443221 12444556666666677666666
No 302
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.69 E-value=1.8e+02 Score=33.64 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=9.6
Q ss_pred HHHHHHHhHHHHHHHHHhhhh
Q 011839 146 LRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 146 d~lQk~A~LE~tIKdLks~~e 166 (476)
...++.-+++..+..+...+.
T Consensus 172 ~~~k~~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 172 LALKESLKLESDLGDLVTELE 192 (670)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444433
No 303
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.48 E-value=41 Score=27.40 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 160 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 160 dLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
+|++.+++-.+.+..+.++|..++...-....++-..+.+...|..+...|+..+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777777777777776666655555544444444444444444333
No 304
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.43 E-value=76 Score=29.25 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 259 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 259 Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
++++..-|.-=.-.+-.++..++.++..|...++
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVS 115 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKELGEEVS 115 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCcc
Confidence 3333333333333344444444444444444443
No 305
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=73.06 E-value=2.2e+02 Score=34.32 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHh
Q 011839 198 QKISQLRDESAALNMKRASLEERLKLLEADKDSWT 232 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~LKaERD~WL 232 (476)
..+..+......+...+..+..++..++..-..||
T Consensus 724 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1047)
T PRK10246 724 EQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTAL 758 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 306
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=72.90 E-value=1.8e+02 Score=33.26 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011839 210 LNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNN 265 (476)
Q Consensus 210 LkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~ 265 (476)
-+++..++-..+..|-..+|.|+++-- .+... +...+.+|+.-+...+...+.
T Consensus 482 ~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n---~~sel~sl~~~~~~~~~r~~~ 535 (607)
T KOG0240|consen 482 AKDEVKEVLTALEELAVNYDQKSEEKESKLSQN---LKSELQSLQEPSEHQSKRITE 535 (607)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh---hHHHHHhhhhcccchhHHHHH
Confidence 333344444445555556677766543 22222 233344444444444444333
No 307
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=72.85 E-value=75 Score=36.33 Aligned_cols=57 Identities=19% Similarity=0.080 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla 194 (476)
.-|.--.++++-++-.|-+.-.=|+.++++..|.+.+|+++|+.|+.++....++..
T Consensus 318 NALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 318 NALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888898988899999999999999999999999999887666654
No 308
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.84 E-value=45 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
.....+..|..++..++.++..+......+..++.+++..+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554443
No 309
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.70 E-value=1.6e+02 Score=32.67 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 269 ENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 269 EIq~LkeqIseLqs~lqeLeeei~ 292 (476)
.+..|..++..+..++..+...++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 310
>PRK09343 prefoldin subunit beta; Provisional
Probab=72.60 E-value=73 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
..|...++.++.++..++.....++.++.+++..+..+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555554444
No 311
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=72.56 E-value=2.4e+02 Score=34.67 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 011839 115 VQQLQNECDLYKEKVQATL 133 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~ll 133 (476)
-+.|+++|...+|.|+.+.
T Consensus 1065 s~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3556777777777766543
No 312
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.31 E-value=1.1e+02 Score=30.50 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
+..|+.....+..++.....++....++...+..++..++..+..|+.+
T Consensus 54 ~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 54 IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555555555333
No 313
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.25 E-value=88 Score=30.47 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhhh
Q 011839 89 ILEETVKHLRNERE 102 (476)
Q Consensus 89 ~~eeti~~l~~e~d 102 (476)
.+=|.|+.|+-++.
T Consensus 54 ~l~e~v~~l~idd~ 67 (190)
T PF05266_consen 54 NLAEKVKKLQIDDS 67 (190)
T ss_pred HHHHHHHHcccCCc
Confidence 45566676666554
No 314
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.23 E-value=36 Score=37.16 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+..-..-...++..+..++..+..++..+.+++..++.++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444455555555555555555555555555554443
No 315
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=72.03 E-value=2.4e+02 Score=34.37 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHhhhhHHHHHhhhHH
Q 011839 112 EGTVQQLQNECDLYKEKVQATL--------EETIQQLQRQNDLRM-------QKEATLEETIKQLRNQNDLHIQREGGLE 176 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~ll--------qEkIkQLq~E~~d~l-------Qk~A~LE~tIKdLks~~es~~Qkea~LE 176 (476)
...+++|-.||..+++.|-+.- +++..|.+.++.... .++..++..|++|++..-....-...|.
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456778888888888876532 344433444443333 3455555555555555555555555788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHH
Q 011839 177 MNIANLQSEKEFWLQKEAALEQKISQLRDE---SAALNMKRASLEERLK 222 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL~~E---easLkQKLasLEeKL~ 222 (476)
.+...++..+....++++.+..+|.++... ....-+++..+|.++.
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~ 531 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLV 531 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777665 2233334444444444
No 316
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.70 E-value=76 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=8.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 011839 242 IAGLSVDITQLRMQVVELEESRN 264 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s 264 (476)
+..+...+..|..+...++..+.
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~ 102 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLK 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 317
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=71.43 E-value=1.7e+02 Score=32.37 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=13.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 011839 107 KEATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
....+...|......+..+..+|
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l 267 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKEL 267 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666554
No 318
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.18 E-value=2.5e+02 Score=34.22 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=4.3
Q ss_pred ccCCCCC
Q 011839 59 DADRHQS 65 (476)
Q Consensus 59 ~~~~~~~ 65 (476)
|-.||-|
T Consensus 335 e~s~HIP 341 (1041)
T KOG0243|consen 335 EHSGHIP 341 (1041)
T ss_pred ccCCCCC
Confidence 5666665
No 319
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.91 E-value=1.1e+02 Score=35.69 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHh
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 232 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WL 232 (476)
|.....+...++.+...+......++.....++.++..|...|+.++
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444444433
No 320
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.81 E-value=1.1e+02 Score=30.03 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011839 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL 267 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Le 267 (476)
.|..-...|+..+..+..+...+++++..+-..++. ........|..|......+-.+.-.++..+..|.
T Consensus 133 aW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~----------~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 133 AWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR----------RQEEAGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566555555555555555555555555544443332 2334555788888888888888899888888899
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011839 268 QENRQLKENVSSLRSQL 284 (476)
Q Consensus 268 eEIq~LkeqIseLqs~l 284 (476)
.+|.+++.+-..++..+
T Consensus 203 ~ei~~l~~~~~~~~~~~ 219 (221)
T PF05700_consen 203 QEIEQLKRKAAELKENQ 219 (221)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888888777665443
No 321
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=70.03 E-value=76 Score=27.78 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 258 ELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 258 ~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
.++..+..++..+..+..++..++..+.+++.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333
No 322
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=70.02 E-value=1.2e+02 Score=30.22 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 246 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 246 ~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
+.++-.-...+..++..+..|..+|.+--..|..|+.+
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555555555555555433
No 323
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.89 E-value=51 Score=34.02 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=44.6
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011839 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLR---NERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEE 135 (476)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~---~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqE 135 (476)
+-|++.|-| +.+-.+--=+..+ ++|.|..|+ .+.|-.|- --++.|..|... .+....++-+-.+
T Consensus 208 NG~~f~P~~-D~~~~dh~V~i~~--------lkeeia~Lkk~L~qkdq~il---eKdkqisnLKad-~e~~~~~ek~Hke 274 (305)
T KOG3990|consen 208 NGDGFPPFG-DRDPGDHMVKIQK--------LKEEIARLKKLLHQKDQLIL---EKDKQISNLKAD-KEYQKELEKKHKE 274 (305)
T ss_pred CCCcCCCCC-CCCCcchHHHHHH--------HHHHHHHHHHHHhhhHHHHH---hhhhhhhccCcc-hhHHHHHHHHHHH
Confidence 567788865 4444443333333 445555544 33333221 113445555443 2222445555666
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 011839 136 TIQQLQRQNDLRMQKEATLE 155 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE 155 (476)
+..||+...++.++..+.|.
T Consensus 275 ~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 275 RVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888777654
No 324
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.33 E-value=2.4e+02 Score=33.37 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~ 254 (476)
|+.+++......+....+-+.|...++.+++++..+...+-.-+.++ ..-|..|--+-..++-.+...-....+++-
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l---~~~kq~~d~e~~rik~ev~eal~~~k~~q~ 515 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL---LENKQQFDIETTRIKIEVEEALVNVKSLQF 515 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555556666666677777755544443333333 233333322211444444444444444444
Q ss_pred HHHHHHHH
Q 011839 255 QVVELEES 262 (476)
Q Consensus 255 QVe~Leee 262 (476)
+++..+.+
T Consensus 516 kLe~sekE 523 (861)
T PF15254_consen 516 KLEASEKE 523 (861)
T ss_pred hHHHHHhh
Confidence 44444333
No 325
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=69.33 E-value=90 Score=30.42 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 011839 81 LLQREAMAI 89 (476)
Q Consensus 81 ~~q~e~~~~ 89 (476)
|=+.|+|..
T Consensus 12 W~~~E~mev 20 (190)
T PF05266_consen 12 WKTIESMEV 20 (190)
T ss_pred hHHHHHHHH
Confidence 333444333
No 326
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.26 E-value=1.5e+02 Score=30.76 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-H-HhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 011839 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-Q-REGGLEMNIANLQSEKEFWLQKEAALE-------QKISQLR 204 (476)
Q Consensus 134 qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~-Q-kea~LEeqIkqLe~EIs~~~qEla~Le-------peiekL~ 204 (476)
.+.+.-++.+....-++....|..+.+|+.++..-- . .-......+..|+.++.....+++.+. |++..++
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence 445577888888888888888889999988765421 1 111233445555555555555555443 4444444
Q ss_pred HHHHHHHHHHH
Q 011839 205 DESAALNMKRA 215 (476)
Q Consensus 205 ~EeasLkQKLa 215 (476)
.+.+.+..++.
T Consensus 249 ~~i~~l~~~i~ 259 (362)
T TIGR01010 249 ARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 327
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=69.16 E-value=69 Score=26.96 Aligned_cols=118 Identities=23% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (476)
Q Consensus 194 a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~L 273 (476)
+.|...+..+......+...+..++..+..++.-.+. ..-.+......+ +..|+.....+..++...
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~I~~~f~~l----------~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAAD---VEAQIKAAFDEL----------RNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHH-HH-HHHHhhhhhhhhhhh
Q 011839 274 KENVS-SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE-NI-ELVEKVNDLSVKLDR 336 (476)
Q Consensus 274 keqIs-eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~e-n~-~l~ekvneL~~~l~~ 336 (476)
..... .+...+..+..... ++..+|..++.++.+ +. +|....+.++..+..
T Consensus 70 ~~~~~~~l~~q~~~l~~~l~------------~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~ 123 (127)
T smart00502 70 KENKLKVLEQQLESLTQKQE------------KLSHAINFTEEALNSGDPTELLLSKKLIIERLQN 123 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
No 328
>PF13514 AAA_27: AAA domain
Probab=68.96 E-value=2.7e+02 Score=33.66 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=15.7
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 302 FSTQIEAAGALIDKLITENIELVEKVNDLSVKL 334 (476)
Q Consensus 302 ~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l 334 (476)
+...++.+..-++.|-.+..++.+..-.+...|
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l 926 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQEL 926 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544444444433
No 329
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.89 E-value=46 Score=29.41 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
..+...+.-+...+..|++.+..+...+..++.++..+...++.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777777777777766655543
No 330
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.78 E-value=29 Score=28.26 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=31.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
.+.+.+...+..+..+..++...+.....|..+|..|+..+.+++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555666666777777777777777777777777777776654
No 331
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.51 E-value=52 Score=33.58 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
++.+...++..+....-+.+.|...+.+|..+...|+.++..|+.++..+
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 44444455555555555555666666666666666666666666655544
No 332
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.43 E-value=2e+02 Score=31.97 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 011839 77 ERQHLLQREAM 87 (476)
Q Consensus 77 ~~~~~~q~e~~ 87 (476)
+|=.+|+|.+.
T Consensus 222 ~kv~flerkv~ 232 (502)
T KOG0982|consen 222 RKVRFLERKVQ 232 (502)
T ss_pred HHHHHHHHHHH
Confidence 44555666553
No 333
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.29 E-value=16 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839 181 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
+|+...+.....-..|..++..|..++..|...+..+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666667777777777777777776666665544
No 334
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=68.20 E-value=1.5e+02 Score=30.51 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhhhHhhh-hh-chHHHHhhhHHHHHHHH
Q 011839 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQM-ES-VSKETIAGLSVDITQLR 253 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L--KaERD~WLkk-EI-sLke~IssL~~~i~sLq 253 (476)
++.+++.+...|..+ +..++..|..+...+..++....+.++-| +-+++--++. .| +|.++|..+ .
T Consensus 64 ~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l-------k 133 (258)
T PF15397_consen 64 QLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL-------K 133 (258)
T ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------H
Confidence 344455555555444 34567777777788888888888888877 4444433333 33 333333332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---------------hhcccchhhhHHHHHHhHHHHHHH
Q 011839 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---------------ATSEQKDFSTQIEAAGALIDKLIT 318 (476)
Q Consensus 254 ~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~---------------~~~~~e~~~~qie~a~~~v~kl~~ 318 (476)
...+.+++.+.+-++..+.. +...++.-..++.++ .+.+|-.|.-.|..-.-+++.|-.
T Consensus 134 ---~~qqdEldel~e~~~~el~~---l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e 207 (258)
T PF15397_consen 134 ---DSQQDELDELNEMRQMELAS---LSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEE 207 (258)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222344444433333332 333333333333322 223566666566555555555555
Q ss_pred HHHHHHHhhhhhhh
Q 011839 319 ENIELVEKVNDLSV 332 (476)
Q Consensus 319 en~~l~ekvneL~~ 332 (476)
+...|...|-.|+.
T Consensus 208 ~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 208 EIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 335
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.19 E-value=67 Score=35.13 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
|..-...+..++..+..+...+.+++..+++++..|+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444555555554444444433
No 336
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=68.03 E-value=1.4e+02 Score=30.27 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQL 161 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdL 161 (476)
..+..++...-.+=...+..+.++
T Consensus 158 ~~~~~~Y~~~p~Kg~ka~evL~~f 181 (297)
T PF02841_consen 158 DELEKEYEQEPGKGVKAEEVLQEF 181 (297)
T ss_dssp HHHHHHHHHSS---TTHHHHHHHH
T ss_pred HHHHHHHhhcCCCCccHHHHHHHH
Confidence 344444433333333444444444
No 337
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.03 E-value=1.3e+02 Score=29.88 Aligned_cols=213 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
+-..++.+...+...+..+..+-.+. ..|..+.+.+-.+....-.+.-.+....+...++-..|...|..+...|....
T Consensus 29 ~~~~L~~~~~~~~~~~~~~~~~e~~l-~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 29 LTNQLRSYRSKLNPQKQQLDPLEKEL-ESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQE 269 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~L-eee~s~LeeE 269 (476)
.+...+.+ ..-.--...+...+...+.=++.++. |+-.-+.. .-.+-...-..|...|... ..-......-
T Consensus 108 ~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~-r~f~~~~~-----~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l 179 (264)
T PF06008_consen 108 EQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRK-RDFTPQRQ-----NAEDELKEAEDLLSRVQKWFQKPQQENESL 179 (264)
T ss_pred HHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHh-ccchhHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHhhHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh--hhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 270 NRQLKENVSSLRSQLSSDESKK--LQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD 335 (476)
Q Consensus 270 Iq~LkeqIseLqs~lqeLeeei--~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL~~~l~ 335 (476)
...++..++.+...+..+..-+ +...+.+.++++........-+.+-.. .+.+..++...-|.
T Consensus 180 ~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~---~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 180 AEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQ---ELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
No 338
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=68.00 E-value=2.8e+02 Score=33.48 Aligned_cols=40 Identities=5% Similarity=0.062 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 183 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 183 e~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
+.........+..+...+..+......+...+......+.
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 755 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFD 755 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555555555444444
No 339
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.90 E-value=80 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
..|...++.++.++..+..++..+..++.+++..+.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 340
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=67.39 E-value=1.2e+02 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 188 FWLQKEAALEQKISQLRDESAALN 211 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLk 211 (476)
.|.++...+..++..|..++..|.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 341
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.24 E-value=1.7e+02 Score=32.89 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011839 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QV 256 (476)
+...+..+.......+...+.+.+.+..+.....+++..|++++.--+.-+. ..| .+.+.|.+++..+..-+.+|
T Consensus 435 Ka~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE----~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 435 KAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE----EQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443333332 245 66667777777777777777
Q ss_pred HHHH
Q 011839 257 VELE 260 (476)
Q Consensus 257 e~Le 260 (476)
..|+
T Consensus 511 ~~LK 514 (518)
T PF10212_consen 511 QTLK 514 (518)
T ss_pred HHHh
Confidence 7665
No 342
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.86 E-value=1.9e+02 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=19.0
Q ss_pred ccchhhhHHHHHHhHHHHHHHHHHHHH
Q 011839 298 EQKDFSTQIEAAGALIDKLITENIELV 324 (476)
Q Consensus 298 ~~e~~~~qie~a~~~v~kl~~en~~l~ 324 (476)
...+|..+.+++.++.+.+++.=.++.
T Consensus 374 ~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 374 QLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888899998888444444
No 343
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.69 E-value=75 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 161 LRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 161 Lks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
++.++......-..|..++..|+.++....++...+..+|..|-..
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555555555555555555554443
No 344
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=66.59 E-value=1.6e+02 Score=31.91 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhhhhHhhhhh
Q 011839 195 ALEQKISQLRDESAALNMKRASLEERLKLLE-ADKDSWTQMES 236 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLasLEeKL~~LK-aERD~WLkkEI 236 (476)
.+...+..+..+...+.+.+..|+.++..|. ..++.|+..|+
T Consensus 96 ~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEa 138 (390)
T PRK10920 96 QQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 3334444445555556666666666666664 44488888887
No 345
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.42 E-value=25 Score=36.51 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 199 KISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
++......-.....++..+++++..|+.+.+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444433
No 346
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=66.22 E-value=1.1e+02 Score=28.71 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~ 205 (476)
..-|++|.+....+... .+..|..++.+|..+++..-.|+..++++|++|..
T Consensus 65 A~sCR~KRv~Qk~eLE~-~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 65 AQSCRVKRVQQKHELEK-EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588888877654433 34557777777777777777777777777777654
No 347
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=65.96 E-value=1.3e+02 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 197 EQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~ 222 (476)
..++..|..+...|..++..+..+..
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344334333333333333
No 348
>PLN03188 kinesin-12 family protein; Provisional
Probab=65.52 E-value=3.5e+02 Score=33.78 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA-------NLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk-------qLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
|+.++-.|+..+.+-=.--.+|+.+++++..--..++-+|. .|...+...-+==|+|..+|-.|++....|..
T Consensus 1049 l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~ 1128 (1320)
T PLN03188 1049 LEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLA 1128 (1320)
T ss_pred HHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556665444444445666666665544444433332 33444444444458888899999888888888
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 213 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 213 KLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+=....+.|..+|..=..-=.+- -=.++|..|-.++..|+.+ .++++.-|-.|+..|+.|+-+-
T Consensus 1129 ~hr~i~egi~dvkkaaakag~kg-~~~~f~~alaae~s~l~~e---reker~~~~~enk~l~~qlrdt 1192 (1320)
T PLN03188 1129 RHRRIQEGIDDVKKAAARAGVRG-AESKFINALAAEISALKVE---REKERRYLRDENKSLQAQLRDT 1192 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhH
Confidence 87777777777733222100000 1134566666666666544 3457777888888888777644
No 349
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=65.29 E-value=75 Score=27.56 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
....+.-+...+..++..+..+...+..+..++..+...++.
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555565555555666666665555555555443
No 350
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=65.21 E-value=1.5e+02 Score=29.29 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
.++|.+...+-+.++....+|++|++
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 351
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=65.10 E-value=1.8e+02 Score=30.32 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=6.2
Q ss_pred hhhhHhhhhh
Q 011839 227 DKDSWTQMES 236 (476)
Q Consensus 227 ERD~WLkkEI 236 (476)
||+.||-.|+
T Consensus 147 ErnAfLESEL 156 (333)
T KOG1853|consen 147 ERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHh
Confidence 5666666665
No 352
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=65.03 E-value=1.3e+02 Score=28.71 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHH
Q 011839 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE 260 (476)
Q Consensus 182 Le~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Le 260 (476)
|+..+...-..+......+.....+.....+.+......|..+-.....|.-.++ .+......+......+..++..+.
T Consensus 20 L~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~l~ 99 (158)
T PF09486_consen 20 LRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAALR 99 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666677777777777777777777777677777777777 777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 261 ESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 261 ee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
..+.....+|......|..+..+++-+...+.
T Consensus 100 ~~l~~~~~~ia~~~raIarn~a~id~~~er~~ 131 (158)
T PF09486_consen 100 QALRAAEDEIAATRRAIARNDARIDVCRERID 131 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77777777777777777777777777777665
No 353
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.89 E-value=30 Score=31.12 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=32.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
-..+..+.+++..+..++..|+..+..+.+||..|+-.-.-|+.++..+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666777777777777777777777766666666666655
No 354
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.46 E-value=2.1e+02 Score=32.11 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=50.5
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
++|+.++....|.-.....+|+.+...+..+.+.-+...++|+++++....|..++-.+=-++..|
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777778888888888888888888887778889999888888877777666664444433
No 355
>PF14992 TMCO5: TMCO5 family
Probab=64.20 E-value=1.9e+02 Score=30.20 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=22.1
Q ss_pred HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011839 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128 (476)
Q Consensus 94 i~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqk 128 (476)
..+|-+.|....||=..-|.+|+.|..+|+..-+-
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~ 47 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHI 47 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34455666666666666677777777776665553
No 356
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.13 E-value=2.7e+02 Score=31.98 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=20.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839 303 STQIEAAGALIDKLITENIELVEKVNDL 330 (476)
Q Consensus 303 ~~qie~a~~~v~kl~~en~~l~ekvneL 330 (476)
..|--..++++-+|.-+|-+-+.+|-..
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566888999988888887766543
No 357
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.12 E-value=1.4e+02 Score=34.97 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh
Q 011839 194 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 234 (476)
Q Consensus 194 a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk 234 (476)
..++.+...+......++.....++.++..|+.+|+.++.+
T Consensus 525 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 565 (771)
T TIGR01069 525 KELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555555555555554433
No 358
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.13 E-value=2.3e+02 Score=30.84 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 011839 269 ENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 269 EIq~LkeqIseLqs~lqeLe 288 (476)
...++.+-+..++.++..|+
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 35566777888888888888
No 359
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.73 E-value=67 Score=31.78 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 274 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lk 274 (476)
...+.++..++..+..||..|+.=+..-..+.++|+
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777788888887777777777766664
No 360
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.60 E-value=3.1e+02 Score=31.80 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH-----
Q 011839 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE----- 187 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs----- 187 (476)
+.|..++++.++.+...-.----..--|+.++++..+.---|..+++.+..+.....+=...+...|+-|+.+.-
T Consensus 437 ~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~L 516 (852)
T KOG4787|consen 437 TELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKL 516 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 456667777766665432222222234666777777777777777788878777777777888889999888765
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 188 --FWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 188 --~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
.+..++..+.|.+.++...+..|.+.+...
T Consensus 517 s~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t 548 (852)
T KOG4787|consen 517 AIDLVSELEGKIPTIDEIEQCCEVLAAVETQT 548 (852)
T ss_pred HHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhH
Confidence 344555666666777766666666655444
No 361
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=61.50 E-value=1e+02 Score=32.37 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 203 LRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 203 L~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
|+..+-+++.--+.|-+-.+.|+. ||. || .|+.++.+++.++-.=.=-..+.+=.+.+--.||++|+.-|+-.+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~d-Ret----EI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHD-RET----EIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhhhh
Q 011839 282 SQLSSDESKK 291 (476)
Q Consensus 282 s~lqeLeeei 291 (476)
+.+..-+..+
T Consensus 138 ssL~ekDkGi 147 (305)
T PF15290_consen 138 SSLAEKDKGI 147 (305)
T ss_pred hhhchhhhhH
No 362
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=61.38 E-value=1.5e+02 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 011839 94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128 (476)
Q Consensus 94 i~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqk 128 (476)
++.|+..-=+.-|-|++..-...-|.+.+......
T Consensus 8 v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~ 42 (177)
T PF07798_consen 8 VKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQD 42 (177)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777877777766666666555444
No 363
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.37 E-value=2e+02 Score=33.85 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
.+++-+.-.+...++..++.|+++++..+....+....+..+.-++.- ..+..+.+....+...+..+.++..+.
T Consensus 530 ~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~-----~~~~~i~~l~~el~eq~~~~~~~~~~~ 604 (809)
T KOG0247|consen 530 MNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST-----EYEEEIEALDQELEEQKMELQQKFSEK 604 (809)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc-----hhhhhhHHHHHHHHhhhHHHHhhccch
Confidence 445555577788899999999999999888888888777777666655 334566777777888888888888777
Q ss_pred HHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 218 EERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 276 (476)
Q Consensus 218 EeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lkeq 276 (476)
..+...+...... .. . ..++..+...+.+++....+.+..+..-
T Consensus 605 ~~~~~~~~~~~~~-------t~-~-------~~~v~~~~~~~~~~l~~~~e~l~~~~~~ 648 (809)
T KOG0247|consen 605 KKAMAKVRGILAN-------TS-P-------ECSVAAKLLELQSKLWFKDEKLKHLTAI 648 (809)
T ss_pred hHHHhhhccccCC-------Cc-h-------hhhHHHHHHHHHHHhcccHHHHHHhhcc
Confidence 6666655332222 00 1 1155555555666666666666555443
No 364
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.27 E-value=1.3e+02 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 285 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lq 285 (476)
...|...++.|+-++..|......+++++.++++.|.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455444444444443
No 365
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=61.02 E-value=1.8e+02 Score=28.89 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011839 192 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (476)
Q Consensus 192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD 229 (476)
.++..+-+--+|..+++.+...++..+++...|+++-+
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~ 136 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQ 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666433
No 366
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.96 E-value=1.4e+02 Score=27.59 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+..........+.+|..+...++.+-..++.+...+..|...|..++
T Consensus 76 klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555666666666666666666666665555555554
No 367
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.94 E-value=30 Score=27.29 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+..|+..+..|..++..|+..+..|...+..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 368
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.93 E-value=3.1e+02 Score=31.54 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011839 183 QSEKEFWLQKEAALEQKI----SQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 183 e~EIs~~~qEla~Lepei----ekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QV 256 (476)
+.++.++.........+| .++....+.|.+++..+..+.+.....|..||+.++ .-...|+..-..+..+-+++
T Consensus 138 ~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~ 216 (611)
T KOG2398|consen 138 KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEF 216 (611)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 444444444444444443 344455667888888999999999999999999998 66666655544444443333
No 369
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=60.81 E-value=1.6e+02 Score=28.11 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
-++..+...+.++.+.++..++.|+.-+.++.-.-..+. ..++=....+.|.+.-++..|.-+...+.++-..+
T Consensus 26 ~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~------r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l 99 (147)
T PF02090_consen 26 LQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLS------REELYALLRKQAVVRRQIQELNLQEQQIQEKRRQL 99 (147)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHcccccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888888887666554421111 23444667778888888888888888898999999
Q ss_pred HHHHHHHHHhhhhHhhhhhchHHHH
Q 011839 218 EERLKLLEADKDSWTQMESVSKETI 242 (476)
Q Consensus 218 EeKL~~LKaERD~WLkkEIsLke~I 242 (476)
+.++..++..|.-|+.++=.-..-+
T Consensus 100 ~ke~~~~~~~r~~wlrK~dkY~rw~ 124 (147)
T PF02090_consen 100 EKEKQEQQEQRKHWLRKEDKYDRWQ 124 (147)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999999999886444333
No 370
>PRK04406 hypothetical protein; Provisional
Probab=60.66 E-value=52 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+..-+..|...+..++..+..|+..+-....+|+.|+.+++.|.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333
No 371
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=60.08 E-value=1.7e+02 Score=28.38 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
.-+..|+.-+++|-.-.+..+....-+......+-..+..+-.- | ....+...+.+.+....+++.+...
T Consensus 11 ~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~-E---------~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 11 QYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSL-E---------LSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------cchHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655555544444444444444444332 1 1134555556666666666666654
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhh
Q 011839 165 NDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 244 (476)
Q Consensus 165 ~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~Iss 244 (476)
...+.-..|.+.|..+-.-+.+.. .+.......-+.+..++..+..+++.++.+....-+....+..
T Consensus 81 --~a~~e~~~l~~~L~ey~r~~~Svk-----------~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~ 147 (216)
T cd07627 81 --QALQDVLTLGVTLDEYIRSIGSVR-----------AAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNS 147 (216)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 333444445555555554444322 1112222222222233333333333333322111122346666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHH
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALI 313 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v 313 (476)
++.++..++..+..++.+...+.+.+..-..... ..++..+...+. ..++++|+....++
T Consensus 148 ~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~--~~r~~dfk~~l~-------~~~e~~ie~~k~~i 207 (216)
T cd07627 148 LLSELEEAERRASELKKEFEEVSELIKSELERFE--RERVEDFRNSVE-------IYLESAIESQKELI 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 6666667777777777766666666655433333 233333333332 34455665554443
No 372
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.04 E-value=59 Score=30.82 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+.+..+++.++.++...+.++..|+.|.+.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 373
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.95 E-value=58 Score=29.05 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK 225 (476)
.+=+++.+++..+.....+++.|+..+..|.++|+.|+-....|-+.+..+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677888888888888888888888888888888877777766666553
No 374
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.63 E-value=34 Score=27.52 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 255 QVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
++-.++..++++..+++++++.+..+
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443333333
No 375
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=59.41 E-value=11 Score=36.13 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=14.1
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
.+|+.......++.+.||.+| .|...|..+...|++|-..|++.+
T Consensus 3 eD~EsklN~AIERnalLE~EL-----------dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL-----------DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 333344444444444444444443
No 376
>PF14282 FlxA: FlxA-like protein
Probab=59.36 E-value=38 Score=29.79 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=28.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 239 KETIAGLSVDITQLRMQVVELEES----RNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee----~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
...|..|+..+..|+.++..|... -......++.|..+|..|+.+|..+....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666652 12334445555555555555555444433
No 377
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=59.17 E-value=2.1e+02 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 172 EGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~Lepeie 201 (476)
+..+...+..++.....+.+++...-.+|.
T Consensus 206 ~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~ 235 (447)
T KOG2751|consen 206 EAELDHQLKELEFKAERLNEEEDQYWREYN 235 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443444433333333
No 378
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.92 E-value=60 Score=26.85 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhh
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG 173 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea 173 (476)
.+|+.++..+.+.++.+...-..|.++++.+.++-.
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554555554444444333
No 379
>PRK02119 hypothetical protein; Provisional
Probab=58.89 E-value=50 Score=27.48 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011839 253 RMQVVELEESRNNLLQEN 270 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEI 270 (476)
...+..++..+..|+..+
T Consensus 15 E~rla~QE~tie~LN~~v 32 (73)
T PRK02119 15 EMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 380
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.57 E-value=67 Score=27.51 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011839 217 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 217 LEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QV 256 (476)
++..+..+.+-++..+..+| .|++....+...+..|+.++
T Consensus 58 Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 58 LESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555666666666 66666666666655555554
No 381
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.08 E-value=1.1e+02 Score=32.60 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES-RNNLLQE 269 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee-~s~LeeE 269 (476)
.|-..+..++.+|++....+++++.++.+-+..- - ..|+.++..+..|...++.++.. ...-...
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C----~----------ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~ 69 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKC----S----------SSISHQKKRLKELKKSLKRCKKSLSAEEREL 69 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 4556788888888888888888888775444322 1 13444444445555555555432 2223455
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q 011839 270 NRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 270 Iq~LkeqIseLqs~lqeLee 289 (476)
++++++.+...+..+.+++.
T Consensus 70 i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHh
Confidence 66666667777666666663
No 382
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=57.99 E-value=3.1e+02 Score=30.72 Aligned_cols=184 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le 197 (476)
+++|+.++...+....++- ..++.....+-...-.+|..+.+|.+. +.++|..+=.+++.|..-.-.+.
T Consensus 307 s~~E~ee~rve~~~s~ed~-~~~q~q~~~Lrs~~~d~EAq~r~l~s~----------~~~q~~~~h~~ka~~~~~~~~l~ 375 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDS-AHIQDQYTLLRSQIIDIEAQDRHLESA----------GQTQIFRKHPRKASILNMPLVLT 375 (554)
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH----------hHHHHHHhhhHhhhhhhchHHHH
Q ss_pred HHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHH
Q 011839 198 QKISQLRDESAALNM---------------KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES 262 (476)
Q Consensus 198 peiekL~~EeasLkQ---------------KLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee 262 (476)
..|+++.-+....++ +...+..-+.+|+. -.|=..--.+......|-..+..-+...+.+...
T Consensus 376 ~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~--r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~ 453 (554)
T KOG4677|consen 376 LFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKL--RAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEI 453 (554)
T ss_pred HHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHH--HhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc-------ccchhhhHHHHHHhHHHH
Q 011839 263 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-------EQKDFSTQIEAAGALIDK 315 (476)
Q Consensus 263 ~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~-------~~e~~~~qie~a~~~v~k 315 (476)
+..+.-..+-|.+.++..+.-=-.+...-.+...+ ..+++ .|+-+|.+-|++
T Consensus 454 ~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~v~~l~~d~~~~-~q~r~a~s~VD~ 512 (554)
T KOG4677|consen 454 LHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDVVIDLYRDLKDR-QQLRAARSKVDK 512 (554)
T ss_pred HhhhhhhHHHHHHHhccccccceeeccCCCcccccccchHhhhhhhh-HHHHHHHhhcch
No 383
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.40 E-value=1.6e+02 Score=27.17 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
...+...|..=+..+...+...+...
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rL 107 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERL 107 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 384
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=57.00 E-value=1.5e+02 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
..+...+.-+|.-|...+..|..+++.+..|+.
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e 216 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLE 216 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 455677777888888888888777777766665
No 385
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.29 E-value=32 Score=36.43 Aligned_cols=8 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 011839 77 ERQHLLQR 84 (476)
Q Consensus 77 ~~~~~~q~ 84 (476)
.+..|++.
T Consensus 41 ~~~~~~~~ 48 (370)
T PF02994_consen 41 LKSYLIMM 48 (370)
T ss_dssp --------
T ss_pred cchHHHHH
Confidence 44555543
No 386
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.06 E-value=56 Score=34.05 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 219 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEe 219 (476)
+...+..+.....++..+..+|+....+...+..+....+.
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344443444444444444444444444444333333
No 387
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=55.97 E-value=3.9e+02 Score=31.23 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=74.7
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhh
Q 011839 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADK 228 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L-KaER 228 (476)
.+..--++|++|+.=++.+.++ |..+=..||.++-.. ..|+-+--.|-.+...|+.+++.+|...+.- +.-|
T Consensus 133 qVeaQgEKIrDLE~cie~kr~k---LnatEEmLQqellsr----tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R 205 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEKRNK---LNATEEMLQQELLSR----TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR 205 (861)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh---hchHHHHHHHHHHhh----hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 4444456777777755554443 333333444444332 3444444556666667777777666544321 1111
Q ss_pred hhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccch
Q 011839 229 DSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN-------NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD 301 (476)
Q Consensus 229 D~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s-------~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~ 301 (476)
+. +..+..++ +..|..+..+.. +...+...|++++++-...+..+.....+...-+++.
T Consensus 206 ~s--------e~l~qevn------~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~ 271 (861)
T KOG1899|consen 206 LS--------ENLMQEVN------QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEH 271 (861)
T ss_pred hH--------HHHHHHHH------HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccc
Confidence 11 11111111 222333333332 3344555666666655555555555554443334444
Q ss_pred hhhHHHHHHhHHHHHHHHHHH
Q 011839 302 FSTQIEAAGALIDKLITENIE 322 (476)
Q Consensus 302 ~~~qie~a~~~v~kl~~en~~ 322 (476)
--.++.-..--++.|+.-|.+
T Consensus 272 ~~~rd~~lk~a~eslm~ane~ 292 (861)
T KOG1899|consen 272 KSLRDNTLKNALESLMRANEQ 292 (861)
T ss_pred hhhHHHHHHHHHHHHHhhchh
Confidence 444555666667777777743
No 388
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=55.82 E-value=68 Score=29.62 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011839 199 KISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
.|+++.+.+..+++.++.....+..|+.+.+.
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777666666666555544
No 389
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=55.27 E-value=1.4e+02 Score=25.77 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
..++.+|..|....+..-+++.....+..+|..-+..+..+|...-+.++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666677777777777777777777777777776666553
No 390
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.90 E-value=66 Score=36.77 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHH
Q 011839 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN 320 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en 320 (476)
++...++..|+.+.+.|.+++..+...|..++..|-.-+..+. .|...|++|+.-.+.|.+.|
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~---------------~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELS---------------ALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH---------------HHHhHHHHHHHHHHHHHhhc
Confidence 3333344444444444444444444444444444443333333 34445555555555555433
No 391
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=54.35 E-value=2.4e+02 Score=28.19 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011839 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla 194 (476)
|.-|...+.++.-++-.+..+. -.|...+.+.--.....+..+..|+....+-.......+.++.+..++++.+..++.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Ei-v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEI-VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 4445555555555544444444 667777777777777777777777776655555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 011839 195 ALEQKISQLRDESAAL 210 (476)
Q Consensus 195 ~LepeiekL~~EeasL 210 (476)
.++.++..|....+..
T Consensus 91 ~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 91 QLEAELAELREELACA 106 (202)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 5555555555554443
No 392
>PRK00295 hypothetical protein; Provisional
Probab=54.04 E-value=63 Score=26.49 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 011839 252 LRMQVVELEE 261 (476)
Q Consensus 252 Lq~QVe~Lee 261 (476)
|..++..++.
T Consensus 10 LE~kla~qE~ 19 (68)
T PRK00295 10 LESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 393
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.77 E-value=1.5e+02 Score=25.65 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
-+..+...+..+...+..++..+..+..+...++..|.++
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555444
No 394
>PRK00736 hypothetical protein; Provisional
Probab=53.58 E-value=69 Score=26.25 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
+..|..++..++..+..|+..+-....+|..|..+++.|..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333
No 395
>PRK00295 hypothetical protein; Provisional
Probab=52.92 E-value=84 Score=25.75 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqeL 287 (476)
...+|..|+.++..+..++..+
T Consensus 31 Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 31 QQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444443
No 396
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.68 E-value=3.7e+02 Score=29.92 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 011839 309 AGALIDKLITENIELVEKVNDLSVKLDRQSVAAGL 343 (476)
Q Consensus 309 a~~~v~kl~~en~~l~ekvneL~~~l~~~~~~~~~ 343 (476)
+.+.|..|.- +=..||-.||..|+-...-.++
T Consensus 501 ~Katvp~l~~---e~~akv~rlq~eL~~seq~~~~ 532 (542)
T KOG0993|consen 501 LKATVPSLPN---ERPAKVCRLQHELLNSEQKPFF 532 (542)
T ss_pred HHhhcccccc---cchHHHHHHHHHHhhhccCCcc
Confidence 4445555554 2234666777766554443433
No 397
>PRK14011 prefoldin subunit alpha; Provisional
Probab=52.51 E-value=2e+02 Score=26.91 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
......+..+...++.|++....+...++++...+..++..+
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888888888777665443
No 398
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.37 E-value=3.8e+02 Score=29.96 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=6.8
Q ss_pred HHHHhHHHHHHH
Q 011839 307 EAAGALIDKLIT 318 (476)
Q Consensus 307 e~a~~~v~kl~~ 318 (476)
|-|.-.+++|+.
T Consensus 258 eia~~~l~~li~ 269 (514)
T TIGR03319 258 EIARMALEKLIQ 269 (514)
T ss_pred HHHHHHHHHHHH
Confidence 335556666663
No 399
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=52.34 E-value=1.3e+02 Score=25.80 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhH
Q 011839 198 QKISQLRDESAALNMKRASLEERLKLLEAD-KDSW 231 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~LKaE-RD~W 231 (476)
.-+..|..+..++.+.+..-++++..++++ +|.|
T Consensus 7 ~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~ 41 (90)
T PF02970_consen 7 GVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEY 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 345678888888888888888888888776 5555
No 400
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=52.14 E-value=2.4e+02 Score=27.69 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=42.2
Q ss_pred HHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhh
Q 011839 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST 304 (476)
Q Consensus 225 KaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~ 304 (476)
+-..+.|+.-=-.|+..+..+...+..++.+|..+...+..--.+ ....+..|+.+-. +...-+-
T Consensus 128 ~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~----------~~~~L~~Le~~W~-----~~v~kn~ 192 (221)
T PF05700_consen 128 KYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE----------AGEELRYLEQRWK-----ELVSKNL 192 (221)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHH-----HHHHHHH
Confidence 556678875443555555555555555555555444433222111 1222233333332 2223344
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Q 011839 305 QIEAAGALIDKLITENIELVEKV 327 (476)
Q Consensus 305 qie~a~~~v~kl~~en~~l~ekv 327 (476)
+|+.||.-++..+. .|..+-
T Consensus 193 eie~a~~~Le~ei~---~l~~~~ 212 (221)
T PF05700_consen 193 EIEVACEELEQEIE---QLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHH---HHHHHH
Confidence 88888888875555 555443
No 401
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=52.02 E-value=1.6e+02 Score=25.79 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
.....+.-|...+..+...+..+...+..++.++..+...+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555554443
No 402
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=51.95 E-value=3.8e+02 Score=29.87 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---
Q 011839 73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ--- 149 (476)
Q Consensus 73 ~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ--- 149 (476)
..|-|+.-+.++=. .-|++|+++.+...-.=.-|...-.+|...+..-..-|--.|-.+|.+|+.+.+-+.+
T Consensus 151 ~leqeqef~vnKlm-----~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 151 LLEQEQEFFVNKLM-----NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHH-----HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ---------------------HHHhHHHHHHHHHhhhhHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 150 ---------------------KEATLEETIKQLRNQNDLHIQREGG----LEMNIANLQSEKEFWLQKEAALEQKISQLR 204 (476)
Q Consensus 150 ---------------------k~A~LE~tIKdLks~~es~~Qkea~----LEeqIkqLe~EIs~~~qEla~LepeiekL~ 204 (476)
.-+.+-..|..|+++++.....-.. ..+++.+|..+--.+..+..++..++..-.
T Consensus 226 qpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 226 QPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred CcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 011839 205 DESAALNMKRASLEERLKLL 224 (476)
Q Consensus 205 ~EeasLkQKLasLEeKL~~L 224 (476)
+...++-+.+.+.+.-+..+
T Consensus 306 erRealcr~lsEsesslemd 325 (552)
T KOG2129|consen 306 ERREALCRMLSESESSLEMD 325 (552)
T ss_pred HHHHHHHHHhhhhhHHHHHH
No 403
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=51.54 E-value=96 Score=27.99 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+=+++.+|+..+.....+++.|+..+..|.++|+.|.-.-..|-.++..+
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777777777777777777777776666665555544
No 404
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.48 E-value=1.7e+02 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=11.7
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHH
Q 011839 234 MES-VSKETIAGLSVDITQLRMQVVELE 260 (476)
Q Consensus 234 kEI-sLke~IssL~~~i~sLq~QVe~Le 260 (476)
+|+ .+++.|...+.+...|+.|.+.+.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 444444444444444444444443
No 405
>PF14992 TMCO5: TMCO5 family
Probab=51.36 E-value=3.1e+02 Score=28.67 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ 149 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ 149 (476)
+++.-++|++.+..+-+++.. .+++|..|..+.....-
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~-~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQE-KEGAIQSLEREITKMDH 46 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcc
Confidence 567778888888888888755 55666777666655433
No 406
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.89 E-value=61 Score=24.75 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
+..+...|+..-..|..+...|..+++.|+.++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777777777777777777765544
No 407
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=50.71 E-value=1.6e+02 Score=29.14 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 247 VDITQLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
..+.+++.+|..+++....|+.....-+..+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL 190 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQEL 190 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444443333
No 408
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.94 E-value=5.2e+02 Score=30.85 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.|.-+..+++-++++..-....+..+|...+.+=..|
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 3444445555555555555555555665555554444
No 409
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=49.81 E-value=5.4 Score=44.04 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011839 206 ESAALNMKRASLEERLKLLEADKDSW 231 (476)
Q Consensus 206 EeasLkQKLasLEeKL~~LKaERD~W 231 (476)
...++..+|...|.+|++++.|+|.-
T Consensus 409 ll~qyq~RLedSE~RLr~QQ~eKd~q 434 (495)
T PF12004_consen 409 LLLQYQARLEDSEERLRRQQEEKDSQ 434 (495)
T ss_dssp --------------------------
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhHHH
Confidence 34455667788888889888888873
No 410
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.48 E-value=87 Score=29.46 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHH
Q 011839 260 EESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAG 310 (476)
Q Consensus 260 eee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~ 310 (476)
+...+.+..+...++.+|.....+|..|+... ..+++|..+|+...
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~-----~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSA-----KDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHH
Confidence 33333444444444444444444444444422 24555555554333
No 411
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=49.28 E-value=2.4e+02 Score=26.86 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 202 QLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 202 kL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.|..+.+.+..+.+.|..=+...+++--..-+.++ .+-...+-+.-.+..|..+...+.+..-.+..+.+.+.++..-|
T Consensus 34 ~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~~~~~~r~~w 113 (147)
T PF02090_consen 34 KLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQEQQEQRKHW 113 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333333666566677888 88888888888889999999999999999999998888887766
No 412
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=48.87 E-value=2.7e+02 Score=27.22 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
...+..+...+..+...|..|+..+..|...+...+..-..|..+.+.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555544444433
No 413
>PF15456 Uds1: Up-regulated During Septation
Probab=48.77 E-value=2.2e+02 Score=26.13 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011839 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 294 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~ 294 (476)
+...++++..+...++++-..+..+..++..+....+.|
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH 114 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEH 114 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666677777777777777655
No 414
>PRK02119 hypothetical protein; Provisional
Probab=48.70 E-value=93 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 255 QVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
.+..|+..+.-.+..|++|...|...+..|
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333
No 415
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.48 E-value=91 Score=25.40 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqe 286 (476)
...+|..|+.++..|..++.+
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 416
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.31 E-value=2.4e+02 Score=28.36 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=22.6
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
.++..+......+..++.++..|....+++..|.+.|.+.-+.|+.++
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444444444444444454444444444444444444444444443
No 417
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=47.90 E-value=2.5e+02 Score=26.54 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 174 GLEMNIANLQSEKEFWLQKEAALEQKI 200 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~Lepei 200 (476)
.+..++..|+..++...+.+..|..-+
T Consensus 10 ~l~a~lq~l~~qie~L~~~i~~l~~~~ 36 (145)
T COG1730 10 ELAAQLQILQSQIESLQAQIAALNAAI 36 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444443333
No 418
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=47.70 E-value=3.4e+02 Score=28.96 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+..+..-+..|-.++-.|.|+. +.|+..+...|..+
T Consensus 171 v~~K~~~E~~L~~KF~~vLNeK---K~KIR~lq~~L~~~ 206 (342)
T PF06632_consen 171 VNAKEEHEEDLYAKFVLVLNEK---KAKIRELQRLLASA 206 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHh
Confidence 3333333344445555555554 34444444444433
No 419
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.69 E-value=1.5e+02 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
|..|......|...+.+|...++.++..++....+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444
No 420
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.63 E-value=61 Score=25.77 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+..+..++..++.++..+..+++.|+..+..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555565566666666666666666555
No 421
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.54 E-value=4e+02 Score=31.57 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-h----hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011839 76 AERQHLLQREAMAILEETVKHLRNERE-S----HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQK 150 (476)
Q Consensus 76 ~~~~~~~q~e~~~~~eeti~~l~~e~d-~----~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk 150 (476)
.+..++.++.-+..+++--+..-.+++ . .-+++.+.++....++-+...+... .....+.|.|+.++.....++
T Consensus 485 ~~~~~~~~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~-l~~kke~i~q~re~~~~~~k~ 563 (809)
T KOG0247|consen 485 EEQDKNDKETLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLESQMLSSQ-LNDKKEQIEQLRDEIERLKKE 563 (809)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhh
Confidence 345555555544444444433222222 1 1234444555555555555666666 455677778999999988888
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
...++..|.=++.. ..+..++.....++.....+.++....+++..+....
T Consensus 564 ~l~~e~~~~i~E~~-----~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~ 614 (809)
T KOG0247|consen 564 NLTTEYSIEILEST-----EYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGI 614 (809)
T ss_pred hhhhhhhhhhhhcc-----hhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccc
Confidence 88888888777765 3333444444445555555555555555555544433
No 422
>PF07902 Gp58: gp58-like protein; InterPro: IPR012892 Sequences found in this entry are derived from a number of bacteriophage and prophage proteins. They are similar to gp58 (Q38355 from SWISSPROT), a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H [].
Probab=47.52 E-value=22 Score=40.27 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=24.7
Q ss_pred hhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 233 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 233 kkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
..|+ +-+-.|++++++..++...+..++..+++|.+++..++..|.
T Consensus 260 ~~ei~~~~gaVS~vqQtads~~~rLq~aE~n~SSL~QTV~GLqs~Vs 306 (601)
T PF07902_consen 260 SQEISNREGAVSRVQQTADSYQRRLQDAEGNYSSLTQTVRGLQSTVS 306 (601)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 3444 444455555555555555555555555555555555555555
No 423
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=47.25 E-value=4.9e+02 Score=29.76 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=43.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--------------hc-----
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA--------------TS----- 297 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~--------------~~----- 297 (476)
.+...+..+...+..+..+.......+.+|...--+-++.+..+.+++..+..-..-+. ++
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~ 458 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQD 458 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHH
Confidence 34444455555555555555555555555555555555666666666666665442221 00
Q ss_pred ---ccchhhhHHHHHHhHHHHH
Q 011839 298 ---EQKDFSTQIEAAGALIDKL 316 (476)
Q Consensus 298 ---~~e~~~~qie~a~~~v~kl 316 (476)
+..+....++++..+|+.-
T Consensus 459 l~~eLse~pinm~~v~~~v~~a 480 (570)
T COG4477 459 LMKELSEVPINMEAVSALVDIA 480 (570)
T ss_pred HHHHHhhcCCcHHHHHHHHHHH
Confidence 4455555677777776653
No 424
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.08 E-value=2.3e+02 Score=26.03 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=15.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~ 272 (476)
|++++..+...+..|..+...+.+++..+...|++
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 425
>COG5293 Predicted ATPase [General function prediction only]
Probab=47.04 E-value=4.7e+02 Score=29.54 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 208 AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE 261 (476)
Q Consensus 208 asLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Lee 261 (476)
...++.+..+++=-+.+-++|-.+|+.|| .++..+..++..+..|..+..+.=.
T Consensus 316 g~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~ 370 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLA 370 (591)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888999999999999 9999999999999988877765433
No 426
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=46.96 E-value=3e+02 Score=27.33 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh--chHHHHhhhHHHHHHHHHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES--VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI--sLke~IssL~~~i~sLq~QV 256 (476)
++.+-..+..|..|+..|+....+|+++|..|..---.|-...+ | ..-|-.|- .=.=..+.+.++...-..++
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRq--K---grklarEWQrFGryta~vmr~eV~~Y~~KL 117 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQ--K---GRKLAREWQRFGRYTASVMRQEVAQYQQKL 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHH--H---hHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66667777888999999999999999999666543333322111 1 11111222 11113466777788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 257 VELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 257 e~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
..|+.....+..+|..|++-.--|..+.
T Consensus 118 ~eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 118 KELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 9999999999999999977665554333
No 427
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.93 E-value=78 Score=25.56 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011839 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
.|..++..|..+|..|..+.+.+-..++..++....-..||.+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333334444443333333334433
No 428
>PF13945 NST1: Salt tolerance down-regulator
Probab=46.85 E-value=1.5e+02 Score=29.27 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=5.4
Q ss_pred hhhhHhhHHHH
Q 011839 104 HIQKEATLEGT 114 (476)
Q Consensus 104 ~~~~e~~~Ek~ 114 (476)
.|-|+++|.++
T Consensus 124 kIEKe~VLkkm 134 (190)
T PF13945_consen 124 KIEKEAVLKKM 134 (190)
T ss_pred HhhHHHHHHHH
Confidence 34455555444
No 429
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=46.79 E-value=4.4e+02 Score=29.11 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=44.1
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhh--------hhcccch
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLL-------QENRQLKENVSSLRSQLSSDESKKLQH--------ATSEQKD 301 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~Le-------eEIq~LkeqIseLqs~lqeLeeei~~~--------~~~~~e~ 301 (476)
+-......+...+..|+.++..++-++..+. -.+..|+.+|..++.+|.....++... ...+-+.
T Consensus 276 DP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~ 355 (434)
T PRK15178 276 DPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFED 355 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Confidence 5555555555556666666666666555553 346666666666666666666665421 1124455
Q ss_pred hhhHHHHHHhHHH
Q 011839 302 FSTQIEAAGALID 314 (476)
Q Consensus 302 ~~~qie~a~~~v~ 314 (476)
|..+.++|.....
T Consensus 356 L~le~efAe~~y~ 368 (434)
T PRK15178 356 LRLQSEIAKARWE 368 (434)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 430
>PRK00736 hypothetical protein; Provisional
Probab=46.64 E-value=1.1e+02 Score=24.98 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 011839 266 LLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs~lqe 286 (476)
...+|..|..++..+..++..
T Consensus 31 Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 31 QWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 431
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.42 E-value=2.1e+02 Score=27.68 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 191 QKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
+.+....|....+..++..++..+..|..++.
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e 121 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNE 121 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433333
No 432
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=46.31 E-value=2.2e+02 Score=25.60 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS 201 (476)
Q Consensus 139 QLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeie 201 (476)
..+..+..++...+.++..+.+++.-.++........+..-.+++..|..-..+.+.++.++.
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~ 105 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELE 105 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888776666555554444444444444443344333333333
No 433
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=46.16 E-value=4.4e+02 Score=28.97 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011839 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
+.|+.+-..|..++.....+.++++.++..-.+.+..+-.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCik 391 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIK 391 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555555556666666666666666655444444433
No 434
>PRK04406 hypothetical protein; Provisional
Probab=46.12 E-value=1.1e+02 Score=25.77 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
+|..|...++-...=|..|...+.....+|..|+.++..+..++..+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333344444444444444444444444444443
No 435
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.73 E-value=1.1e+02 Score=25.42 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011839 251 QLRMQVVELEESRNNLLQEN 270 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEI 270 (476)
.|..++..++..+..|+..+
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v 31 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTV 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 436
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=45.54 E-value=4.5e+02 Score=28.89 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 196 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 196 LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
|..--.+|...-..|-.++..|+.-+..|.. |. +.+.+.-....+..+..++..+..++..+...+...+-
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRk--DV-------~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp 274 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRK--DV-------VQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKP 274 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 3333444444455555555555555555533 22 22233333333444444444444444445555555544
Q ss_pred HHH-HHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHH
Q 011839 276 NVS-SLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDK 315 (476)
Q Consensus 276 qIs-eLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~k 315 (476)
... -|...++.+=+ |.+-|+.|-+.+..|-+.
T Consensus 275 ~WkKiWE~EL~~V~e--------EQqfL~~QedL~~DL~eD 307 (424)
T PF03915_consen 275 IWKKIWESELQKVCE--------EQQFLKLQEDLLSDLKED 307 (424)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 444 45555555532 333455555554444443
No 437
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.39 E-value=1.1e+02 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
|..|...+.....+|..|..++..+..++..+
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444444444444443
No 438
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.85 E-value=4.8e+02 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
...+..+.--+..|.....+|+-+.+.-=+++.-+
T Consensus 215 ~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~ 249 (446)
T KOG4438|consen 215 NKILNALKLLVVTLEENANCLKTQIVQSPEKLKEA 249 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444445555555555555555444444433
No 439
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.73 E-value=1.6e+02 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 197 EQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..++.++.+.-..+..++..+|.++..|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555556555556666666666666555
No 440
>smart00338 BRLZ basic region leucin zipper.
Probab=44.43 E-value=75 Score=25.08 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
...+..|+..+..|..++..|..++..+...+..|....
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 441
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.39 E-value=1.4e+02 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 155 E~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
+.++..|+.....+.+....|..+|..|+.+|.
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~ 71 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID 71 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 442
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.31 E-value=2.2e+02 Score=24.86 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011839 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QV 256 (476)
++-.-+.++......+..-..+|..+......-...|...+..+. ..+ .....|..............
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~-----------~~~~~f~~flken~~k~~rA~k~a 69 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELE-----------EDVIKFDKFLKENEAKRERAEKRA 69 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 257 VELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 257 e~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
..-.........+|..|...+..+...++.++..+
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=44.14 E-value=1.9e+02 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 011839 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 127 (476)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkq 127 (476)
+.++.=+|..+........++...|-..|..+..++..+..
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666555554
No 444
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=43.97 E-value=50 Score=29.47 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHH
Q 011839 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 258 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~ 258 (476)
=+.|+.-|..|..+|+.-...+.....+.+.|-+.|..- ...|..|..++..
T Consensus 17 ~k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n----------------------------~~~I~~L~~~v~~ 68 (116)
T PF05064_consen 17 GKTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVEN----------------------------GEKISKLYSEVQK 68 (116)
T ss_dssp --------------------------------TCHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 356677788888888877777777777776664444433 3444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 259 LEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 259 Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
++..-..++.+++-+..+=.+|..-+..++..+
T Consensus 69 ~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~ 101 (116)
T PF05064_consen 69 AESEQKRLDQELDFIEAQQKELEELLDPLEKQV 101 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444
No 445
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=43.94 E-value=4.3e+02 Score=28.18 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 011839 89 ILEETVKHLRNERESHIQ 106 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~ 106 (476)
++.++|..-+.+...-.+
T Consensus 205 ~s~~ni~~a~~e~~~S~~ 222 (384)
T PF03148_consen 205 FSNENIQRAEKERQSSAQ 222 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666554433
No 446
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.89 E-value=5.1e+02 Score=29.01 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=7.0
Q ss_pred chhHHHHHHhhc
Q 011839 453 PFRLVSFVAKYV 464 (476)
Q Consensus 453 pfrlisfva~yv 464 (476)
-+|.|.++-||-
T Consensus 351 ~LrtI~~~Wr~e 362 (475)
T PRK10361 351 ALRTIANLWRYE 362 (475)
T ss_pred HHHHHHHHHHHH
Confidence 366666665553
No 447
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.56 E-value=4e+02 Score=27.72 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 259 LEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 259 Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
+.+++...+.+.+.++.++.+...++..++.+-
T Consensus 212 ~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444333
No 448
>PRK00106 hypothetical protein; Provisional
Probab=43.40 E-value=5.4e+02 Score=29.16 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=6.4
Q ss_pred chhHHHHHHhhccc
Q 011839 453 PFRLVSFVAKYVSG 466 (476)
Q Consensus 453 pfrlisfva~yvsg 466 (476)
||=.|=|+|-++|+
T Consensus 430 ~~a~IV~~AD~lsa 443 (535)
T PRK00106 430 VIAVIVAAADALSS 443 (535)
T ss_pred hHHHHHHHHHHhcc
Confidence 44444445544443
No 449
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.30 E-value=4e+02 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 188 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+..++..+..++.+...+...+..++...-+++..|
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 450
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.07 E-value=81 Score=25.41 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=19.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~L 273 (476)
++..+..+...+..++.+...+..++..+.+.++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544
No 451
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=43.03 E-value=2.6e+02 Score=26.11 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHH
Q 011839 231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAA 309 (476)
Q Consensus 231 WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a 309 (476)
|+.-++ .+...+...+..+...+..+..+...+..+....+.-...-..|...+..........
T Consensus 16 ~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~r--------------- 80 (135)
T TIGR03495 16 WQSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQR--------------- 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HhHHHHHHHHHHHHH
Q 011839 310 GALIDKLITENIELV 324 (476)
Q Consensus 310 ~~~v~kl~~en~~l~ 324 (476)
...++.|+-||..|.
T Consensus 81 e~~i~rL~~ENe~lR 95 (135)
T TIGR03495 81 EQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHcCHHHH
No 452
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=42.70 E-value=3.5e+02 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
-+|+.++...-+.++.-+.+...|+..+.-..+.++....+-.+.+.+...
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~a 158 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQA 158 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777777777776666666665555555555544443
No 453
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.67 E-value=2.9e+02 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
+..+-..+...+.++..+..+...++.+|......|.
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~ 44 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIK 44 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555444444
No 454
>PRK04325 hypothetical protein; Provisional
Probab=42.50 E-value=1.3e+02 Score=25.03 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011839 252 LRMQVVELEESRNNLLQEN 270 (476)
Q Consensus 252 Lq~QVe~Leee~s~LeeEI 270 (476)
|..++..++..+..|+..+
T Consensus 14 LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 455
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.39 E-value=1.2e+02 Score=32.20 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=45.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHH
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAG 310 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~ 310 (476)
++.+.-..++........+.+++.+-.+.+...|...+..+.++...++.++.....-.....++++..|..+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 55556666666666677777777777777777777777777777777777765533222223344444443333
No 456
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=42.38 E-value=4.5e+02 Score=28.01 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHH----------------
Q 011839 203 LRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNN---------------- 265 (476)
Q Consensus 203 L~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~---------------- 265 (476)
-..-+.+|.+++..++.....|+..... +.+|| .++..|..+...+.....-++..+.++..
T Consensus 242 ~~~vn~al~~Ri~et~~ak~~Le~ql~~-~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~ 320 (384)
T PF03148_consen 242 ADAVNAALRKRIHETQEAKNELEWQLKK-TLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQY 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHH
Confidence 3344566677777777777766555555 44667 77777777777777666666655554443
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011839 266 -LLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 266 -LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
|..|+..|++.+..|+..+...+...
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l 347 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666555555555555444443
No 457
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.15 E-value=6.8e+02 Score=30.02 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011839 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
+..|-+|.|+++---++.-++-..-...|.+|++..+.+.+=.+..-... |...+-..+|.+...+.+|....+
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~I------D~~Sa~rqIael~~~lE~L~~t~~ 691 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASI------DLPSAQRQIAELQARLERLTHTQS 691 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhc------chhhHHHHHHHHHHHHHHhcCChh
Confidence 34688999999999999999999999999999999998877655533333 566666677777777777766544
No 458
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=42.13 E-value=5.8e+02 Score=29.18 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=28.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNN-----------------------LLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~-----------------------LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
...+.+.+++.+-...+.....+.+.+.. ...+++.+..+++...-.+..+..-..
T Consensus 400 ~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~ 478 (570)
T COG4477 400 KVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVD 478 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 45555555555555555555555544433 344555666666555444444444443
No 459
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.71 E-value=1.5e+02 Score=31.95 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011839 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
...|..++..+..++..++.+...+.+.+..+-..+=++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345555556666666666666666655555554444444
No 460
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=41.56 E-value=2.1e+02 Score=24.21 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839 256 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 330 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL 330 (476)
+..++.+-+.+--|.=.|+.++...+ .+.+.+. -|-+|||-.+-+|+.|..++.+.+.+|
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~r-------qELs~aL--------Yq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTR-------QELSHAL--------YQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--------HHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 34455555556666666655555443 3333221 278999999999999999998877665
No 461
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.46 E-value=5.3e+02 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.8
Q ss_pred chhHHHHHHhhcccccc
Q 011839 453 PFRLVSFVAKYVSGADL 469 (476)
Q Consensus 453 pfrlisfva~yvsgadl 469 (476)
+|=+++-+-.|+-..||
T Consensus 523 ~~~ilarae~~l~~gdL 539 (582)
T PF09731_consen 523 VESILARAEYYLERGDL 539 (582)
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 34444444444444444
No 462
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.44 E-value=1.7e+02 Score=25.09 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011839 169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
...+..|-.++..||........+....+.+..+|..+|..|.+=+..|
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667778888888888888888888888888888886665544443
No 463
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=41.37 E-value=8.1e+02 Score=30.66 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHH
Q 011839 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNE 121 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeE 121 (476)
-+++.|..|..+.+.+-..-..++..+..|..+
T Consensus 746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 746 ELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444444433333333333333333
No 464
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.29 E-value=5.5e+02 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011839 139 QLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 139 QLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
++..+..........++..+..|+..
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~ 89 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 465
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=41.17 E-value=2e+02 Score=26.31 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+...+..+...+.....--..+..++.+++.....|..++-.+-.++..|
T Consensus 49 ~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eil 98 (141)
T PF13874_consen 49 HRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEIL 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433335555666666666666666665554444433
No 466
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.16 E-value=5.9e+02 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI 200 (476)
Q Consensus 155 E~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepei 200 (476)
+..|.+|+....-..+.+.+.+..++.-...+.....+++.+.|.=
T Consensus 126 q~~~d~l~~~~~fle~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~ 171 (613)
T KOG0992|consen 126 QIEIDKLKNLLSFLEQEKVDREGLMRQQTQQIESLSEELERLRPIE 171 (613)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3445555555555566667777777777777776666665555443
No 467
>PLN03188 kinesin-12 family protein; Provisional
Probab=41.16 E-value=8.4e+02 Score=30.75 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
|++-+...++-.|.+=+.-++|++..-....+--...+=|..++..-+
T Consensus 1098 l~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaa 1145 (1320)
T PLN03188 1098 LKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAA 1145 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555577777777777777655544444444444555544433
No 468
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.13 E-value=76 Score=36.31 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.|+.++..+..|+..+..-+-++..|..+|.+-+.+..++
T Consensus 108 eI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444455555555555554444444
No 469
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.87 E-value=86 Score=29.56 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 220 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 220 KL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
++..++.=++.|..+-..|...|-..+.++..|...-.-=...+..+..||.+|+.++.++
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444466666666655555555444444445666667777776666654
No 470
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=40.80 E-value=4.3e+02 Score=27.29 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 134 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (476)
Q Consensus 134 qEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQK 213 (476)
+..+.+.-.+.+.|=+...+...+|..|.++..........|...+ +-....-..|+.-
T Consensus 91 e~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L---------------------~~I~sqQ~ELE~~ 149 (254)
T KOG2196|consen 91 ERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQEL---------------------EFILSQQQELEDL 149 (254)
T ss_pred HHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 3345666677888888888888888888876554444444333332 2222233333444
Q ss_pred HHhHHHHHHHH---------HHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011839 214 RASLEERLKLL---------EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 214 LasLEeKL~~L---------KaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
|..+|.++..+ --+|..--+.=-++..++.++..++..+..++-....-.+... .|.++-.-+..+-..+
T Consensus 150 L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~-~~~qi~Kilnah~~sL 228 (254)
T KOG2196|consen 150 LDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTD-PIIQIEKILNAHMDSL 228 (254)
T ss_pred HHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCC-chHHHHHHHHHHHHHH
Confidence 44444444432 2223322222224555666666666655555544444333222 3444555555555555
Q ss_pred hhhhhhhh
Q 011839 285 SSDESKKL 292 (476)
Q Consensus 285 qeLeeei~ 292 (476)
+-|+....
T Consensus 229 qwl~d~st 236 (254)
T KOG2196|consen 229 QWLDDNST 236 (254)
T ss_pred HHHHhhhH
Confidence 55555554
No 471
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=40.76 E-value=2.1e+02 Score=23.60 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhhh
Q 011839 217 LEERLKLLEADKDS 230 (476)
Q Consensus 217 LEeKL~~LKaERD~ 230 (476)
...++..|...++.
T Consensus 17 ~~~~l~~L~~~~~~ 30 (123)
T PF02050_consen 17 AEEQLEQLQQERQE 30 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 472
>PLN02678 seryl-tRNA synthetase
Probab=40.46 E-value=2e+02 Score=31.64 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 203 LRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 203 L~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
+-++.-.+-++...+..++..|+++|+. +.++| ..+.........|..++..|.+++..++.+...+..++..+-.
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~-~sk~I---~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNK-LNKEV---AKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhh
Q 011839 283 QLSSD 287 (476)
Q Consensus 283 ~lqeL 287 (476)
+|=++
T Consensus 107 ~iPNi 111 (448)
T PLN02678 107 TIGNL 111 (448)
T ss_pred hCCCC
No 473
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.72 E-value=90 Score=27.57 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 248 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 248 ~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
.+..++.++..++.+...+..+++.|+.+|..|++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345666777777777777777777777777777543
No 474
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.26 E-value=1.3e+02 Score=31.30 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 155 E~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le 197 (476)
.-.|-+|+...++..+-+..+.++..+|+..+...+.+++.|.
T Consensus 252 dkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 252 DKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred hhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666665555555555566667777777777666666554
No 475
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.46 E-value=2.5e+02 Score=24.69 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 011839 138 QQLQRQNDLRMQKEATLEETIKQL 161 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdL 161 (476)
..+.+....+-+.++.+|.+++.|
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333333333444444444433
No 476
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.26 E-value=17 Score=31.77 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
..|..++.....++..+..++..+...+..+...+
T Consensus 35 ~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 35 ERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 33333333333333333333334433333333333
No 477
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=37.59 E-value=5.4e+02 Score=27.52 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHH
Q 011839 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK-LLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 255 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~-~LKaERD~WLkkEIsLke~IssL~~~i~sLq~Q 255 (476)
+++.++.+-| +++.....|.+.+|+++-..-..++++.|.-++ +|. .++++=-.+...++.++.....+..-
T Consensus 230 ~QM~s~~~nI---e~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~----~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 230 EQMNSMHKNI---EQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLA----SLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHH---HHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444433 455666777777777777766666666655554 221 11111113334455555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 256 VVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIse 279 (476)
|...-+.++..-.++..+++++.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665553
No 478
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.53 E-value=3.6e+02 Score=25.48 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATL 154 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~L 154 (476)
++.....+...+.+++..+...-...+..++.+...+-..+..+
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666665555444444444444444444433333
No 479
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.26 E-value=2.2e+02 Score=30.69 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 011839 116 QQLQNECD 123 (476)
Q Consensus 116 kqLqeEi~ 123 (476)
+.|..++.
T Consensus 337 ~~l~~~~~ 344 (451)
T PF03961_consen 337 EELEEELE 344 (451)
T ss_pred HHHHHHHH
Confidence 33333333
No 480
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.26 E-value=1.9e+02 Score=24.22 Aligned_cols=53 Identities=32% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011839 240 ETIAGLSVDITQLRMQVVELEESRNN--------LLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 240 e~IssL~~~i~sLq~QVe~Leee~s~--------LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
..|..++.++-+|.-.|-.|++.+.. +..++-+|+..+..++..++.+...+.
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554442 344555555555555555555554443
No 481
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.22 E-value=1.1e+02 Score=34.10 Aligned_cols=8 Identities=38% Similarity=0.717 Sum_probs=4.3
Q ss_pred HHHhhccc
Q 011839 459 FVAKYVSG 466 (476)
Q Consensus 459 fva~yvsg 466 (476)
|+|-+++|
T Consensus 327 ~~AG~l~G 334 (475)
T PRK13729 327 WGAGFVDG 334 (475)
T ss_pred HHHHHHHH
Confidence 55555554
No 482
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.20 E-value=1.8e+02 Score=29.36 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=32.9
Q ss_pred hchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 236 SVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 236 IsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
+.|..+|..++.++..|+-+|+.+..++..+.+.-.++-..|+.+.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777777777777777666666666543
No 483
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.01 E-value=6.3e+02 Score=28.10 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011839 68 AESANLAEAERQHLLQREAMAILEETVKHLRNERES-HIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQ 141 (476)
Q Consensus 68 ~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~-~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq 141 (476)
.+.++..+.=+..++-.++-..+=-|+.-++.+-.- .-|--...++.+.++++++...+.+...+..+-|.+..
T Consensus 18 ~e~s~~~~~~~~~~i~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~ 92 (438)
T COG4487 18 CEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE 92 (438)
T ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444444444433333344333332211 12222222367777777777777665555555544444
No 484
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.65 E-value=1.9e+02 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=29.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
.++.++......+..|+.++...+..+..-.+.+++|+..+..+...+......
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555666666555555555555555555555554444444433
No 485
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=36.44 E-value=6.4e+02 Score=28.04 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHhHHHH----HHHHHhhhhHHHHHhhhHH
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQ--------NDLRMQKEATLEET----IKQLRNQNDLHIQREGGLE 176 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E--------~~d~lQk~A~LE~t----IKdLks~~es~~Qkea~LE 176 (476)
..|++.|+.|+.+++.-.-.+++..-.- +-+++- ..-+-+-.|.||.+ |.+|+.. ++
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~-~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRq----------Hq 362 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSAL-RSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQ----------HQ 362 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhH-hhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHH----------HH
Confidence 4578889999988888777765432221 211111 11122234444432 3333332 33
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHH---h----HHHHHHHHHHhhhhHhhhhh-chHHHHhhhH
Q 011839 177 MNIANLQSEKEFWLQKE-AALEQKISQLRDESAAL-NMKRA---S----LEERLKLLEADKDSWTQMES-VSKETIAGLS 246 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEl-a~LepeiekL~~EeasL-kQKLa---s----LEeKL~~LKaERD~WLkkEI-sLke~IssL~ 246 (476)
-++..|+.+++-.+.++ +..-.-|+..++.-..- ...|. + .++=.++...+ =.-++.|+ .|.++-+..=
T Consensus 363 RELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQylee-lqsvqRELeVLSEQYSQKC 441 (593)
T KOG4807|consen 363 RELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEE-LQSVQRELEVLSEQYSQKC 441 (593)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34666666666555555 33333333333322111 11111 1 11111111222 22255666 6666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
-++++|-...+.-...+-.+..+++.|..---+|..+
T Consensus 442 LEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnR 478 (593)
T KOG4807|consen 442 LENAHLAQALEAERQALRQCQRENQELNAHNQELNNR 478 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 6777777777776666666666666665444444333
No 486
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.42 E-value=2.3e+02 Score=30.54 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011839 266 LLQENRQLKENVSSLRS 282 (476)
Q Consensus 266 LeeEIq~LkeqIseLqs 282 (476)
+..++.+|..++..++.
T Consensus 387 l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 387 LKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 487
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.42 E-value=72 Score=37.63 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHH
Q 011839 173 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 252 (476)
Q Consensus 173 a~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sL 252 (476)
..++....+|......-..++..+.+.+..........+.+.......+..+....+. +...+...+.++..+
T Consensus 438 ~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~-------~~~~~~~~~~ei~~~ 510 (847)
T KOG0998|consen 438 SNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNL-------LPLQLSNDNREISSL 510 (847)
T ss_pred hhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhh-------cccccccchhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHH
Q 011839 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE 325 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~e 325 (476)
..++..+......|...+...+.++..+...|..+..++. +..-.|++++........+++
T Consensus 511 ~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~------------~~~s~~~~l~~~~~~~~~~~~ 571 (847)
T KOG0998|consen 511 EKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMA------------DTRSKSTLLDDSFKVGMELFE 571 (847)
T ss_pred HHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHH------------hhcccchhhhhhhhhhhhhhh
No 488
>PRK11020 hypothetical protein; Provisional
Probab=36.41 E-value=1.7e+02 Score=26.86 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG 174 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~ 174 (476)
+...|++|-+.++.+.+++.+...-- -..-...+.++++.++.+|..|+........++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rg---d~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~ 63 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRG---DAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQ 63 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF15294 Leu_zip: Leucine zipper
Probab=36.11 E-value=5.3e+02 Score=26.96 Aligned_cols=231 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHhhhh-------hhhhhhhHhhHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011839 91 EETVKHLRNE-------RESHIQKEATLEGTVQQLQNECDLYKEK-----VQATLEETIQQLQRQNDLRMQKEATLEETI 158 (476)
Q Consensus 91 eeti~~l~~e-------~d~~~~~e~~~Ek~IkqLqeEi~~lkqk-----LE~llqEkIkQLq~E~~d~lQk~A~LE~tI 158 (476)
..+-+||++= +++++.-++..-+.|.++=+.|..-.+. |.-..+--.-.++.=+...-+-..+++..|
T Consensus 4 ~kr~~~Lk~Vds~F~Dlk~srL~e~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~di 83 (278)
T PF15294_consen 4 SKREQHLKEVDSCFQDLKSSRLREDTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDI 83 (278)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccH
Q ss_pred HHHHhhhhHHHHHhhh------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 159 KQLRNQNDLHIQREGG------------------------------LEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 208 (476)
Q Consensus 159 KdLks~~es~~Qkea~------------------------------LEeqIkqLe~EIs~~~qEla~LepeiekL~~Eea 208 (476)
..|+++.-...-.+.. |...|.+|+.++.++...+..+..+.....++..
T Consensus 84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~ 163 (278)
T PF15294_consen 84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS 163 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011839 209 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 209 sLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+..+|..+....-..+.-.+...+.. .++.+....+.+. ..++............|.+.+......+-...
T Consensus 164 kl~~~L~~lq~~~~~~~~k~~~~~~~q-----~l~dLE~k~a~lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Q 235 (278)
T PF15294_consen 164 KLEAQLKELQDEQGDQKGKKDLSFKAQ-----DLSDLENKMAALK---SELEKALQDKESQQKALEETLQSCKHELLRVQ 235 (278)
T ss_pred HHHHHHHHHHHHHHhhhcccccccccc-----chhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred hhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011839 289 SKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDL 330 (476)
Q Consensus 289 eei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekvneL 330 (476)
.. ......+.+..=.+.-+...+=+=|+..|...++--..|
T Consensus 236 eq-L~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 236 EQ-LSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred hh-hhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
No 490
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.99 E-value=6.1e+02 Score=27.68 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
+.-+..+..++-.....++..+..|++ +-...+.--...|+.+-.....=+..+-.-++--++|-..|+|.|++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~------~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~ 287 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKE------QYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS 287 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHH
Q 011839 217 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE 260 (476)
Q Consensus 217 LEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Le 260 (476)
+|+|+.=+-.||..=+.+=| +.+..|+.++ ...+.++..++
T Consensus 288 ~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE---~~~~Qq~~q~e 329 (395)
T PF10267_consen 288 MEEKMAYQSYERARDIWEVMESCQTRISKLE---QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhhhhhhhc
No 491
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.90 E-value=4.4e+02 Score=26.74 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------------------------------
Q 011839 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEER--------------------------------------------- 220 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeK--------------------------------------------- 220 (476)
++....++..+..++++++.-++.|+.-|..+...
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 221 LKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 271 (476)
Q Consensus 221 L~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq 271 (476)
|-.+.+-||-|=.+=..|++.+..+.+++..|+.+|..|+.+-..|=+.+.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=3.2e+02 Score=25.82 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------HHhhhhHhhhhh--chHHHHhhhHHHH
Q 011839 195 ALEQKISQLRDESAALNMKRASLEERLKLL-----------------------EADKDSWTQMES--VSKETIAGLSVDI 249 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLasLEeKL~~L-----------------------KaERD~WLkkEI--sLke~IssL~~~i 249 (476)
.+..+|..++++-..+..++..||..++-- --||.- ++. -|+.....+...+
T Consensus 19 ~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTV---keVlP~L~~nke~i~~~i 95 (140)
T KOG4098|consen 19 AVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTV---KEVLPILQTNKENIEKVI 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhH---HHHhHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011839 250 TQLRMQVVELEESRNNLLQENR 271 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq 271 (476)
..|..++....++++.+...+.
T Consensus 96 ~~l~~qL~~k~kElnkfk~~hk 117 (140)
T KOG4098|consen 96 KKLTDQLVQKGKELNKFKKDHK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
No 493
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.69 E-value=4.4e+02 Score=25.96 Aligned_cols=165 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
|.+...+-..++..=.+++.......+..|+..+-.--+..+.+.-.+..|+. -...+...+.+|..|+.++..-.
T Consensus 23 L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~----~~~~k~~qe~eI~~Le~e~~~~~ 98 (206)
T PF14988_consen 23 LWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKE----FRRLKEQQEREIQTLEEELEKMR 98 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHH-----------HHhhhHHHHHHHHHHHHH
Q 011839 191 QKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE-----------TIAGLSVDITQLRMQVVE 258 (476)
Q Consensus 191 qEl-a~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke-----------~IssL~~~i~sLq~QVe~ 258 (476)
.+- +.+..--.+...+...|...+... +...-.+-...+ -+.++..-..++..+=..
T Consensus 99 ~e~~~~l~~~~~qfl~EK~~LEke~~e~-----------~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~ 167 (206)
T PF14988_consen 99 AEHAEKLQEAESQFLQEKARLEKEASEL-----------KILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQ 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011839 259 LEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 259 Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
|..++..+..+...|....+.|..+-+.|..+
T Consensus 168 L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 168 LRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.25 E-value=56 Score=31.45 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQ 202 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Lepeiek 202 (476)
+.+++..++..+..-|-||.+| +++..|...+.+|+.|..++.+|+ .+..++..
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----------dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----------DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
No 495
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=35.23 E-value=3.3e+02 Score=24.31 Aligned_cols=196 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEAT-LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~-LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
+.++..+..|...+..+...+.....+....+....+.+...+.. ++.....|....+.-.. .+...+..+...+.
T Consensus 1 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~~~~l~ 77 (202)
T PF01442_consen 1 TKLDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKE---RIEERIEELKNSLD 77 (202)
T ss_dssp -HHHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHH-HHHHH
Q 011839 188 FWLQKE-AALEQKISQLRDESAALNMKRA-SLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVE-LEESR 263 (476)
Q Consensus 188 ~~~qEl-a~LepeiekL~~EeasLkQKLa-sLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~-Leee~ 263 (476)
....++ ..+...+..+.+........+. .+......+...=..+...=- .+...+..+...+......+.. +....
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~~i~~~~ 157 (202)
T PF01442_consen 78 SSTSELDESLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEELKEKIEERLEELSEELTERAEELEAKISERL 157 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhhcccchhhhHHH
Q 011839 264 NNLLQENRQLKENVS-SLRSQLSSDESKKLQHATSEQKDFSTQIE 307 (476)
Q Consensus 264 s~LeeEIq~LkeqIs-eLqs~lqeLeeei~~~~~~~~e~~~~qie 307 (476)
..+...+...-..+. .+..++..|...+......-.+.+..+||
T Consensus 158 ~~l~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~ 202 (202)
T PF01442_consen 158 EELRESLEEKAEELKETLDQRIEELESSIDRISEDIEEALDQVIE 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 496
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.23 E-value=2.4e+02 Score=22.74 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011839 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
+...+..+...|..+...--..-...|+.++...+.+-.-+-.|+..+..+ ....+..+..+|+.++.+...+.
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~------p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSL------PPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 011839 191 QKEAA 195 (476)
Q Consensus 191 qEla~ 195 (476)
.++..
T Consensus 75 ~~l~~ 79 (79)
T PF05008_consen 75 KELKK 79 (79)
T ss_dssp HHHHH
T ss_pred HHhcC
No 497
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=35.23 E-value=3.8e+02 Score=25.07 Aligned_cols=76 Identities=16% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
...+..++...-+........|..+...+....+.-..-+..-.+|..........++.-+.+|+.|.+||..|+.
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 498
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.09 E-value=4.7e+02 Score=26.14 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HH
Q 011839 155 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKE----FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EA 226 (476)
Q Consensus 155 E~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs----~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L----Ka 226 (476)
+..+...++..++....+..+...+.++...+. .....-..+..+|+.-.+.-..+...++.+|..-..| ..
T Consensus 24 dilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~ 103 (201)
T PF11172_consen 24 DILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQ 103 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHhhhhh--chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhhhhhhhhhh
Q 011839 227 DKDSWTQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS---------SLRSQLSSDESKKLQHA 295 (476)
Q Consensus 227 ERD~WLkkEI--sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs---------eLqs~lqeLeeei~~~~ 295 (476)
|=+.+....+ .+..++...+.....|..-....+....-......+..--++ .++.++..++..+..-
T Consensus 104 EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~L- 182 (201)
T PF11172_consen 104 ELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQL- 182 (201)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hcccchhhhHHHHHHhHHHHH
Q 011839 296 TSEQKDFSTQIEAAGALIDKL 316 (476)
Q Consensus 296 ~~~~e~~~~qie~a~~~v~kl 316 (476)
-.+|+.-|..|.++|..|
T Consensus 183 ---i~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 183 ---IKEMERSIAEADAFIASL 200 (201)
T ss_pred ---HHHHHHHHHHHHHHHHhh
No 499
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=35.02 E-value=5.7e+02 Score=27.06 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHhhhhHHHH--
Q 011839 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLE----ETIKQLRNQNDLHIQ-- 170 (476)
Q Consensus 97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE----~tIKdLks~~es~~Q-- 170 (476)
|+.-|-.-...-.........-+.+++.+.-.|+-++=|+ .+|+.+...+..=...-+ ....+|....-....
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~-~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~ 81 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEK-SHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDP 81 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-HHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhcccc
Q ss_pred ---HhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011839 171 ---REGGLEMNIANLQSEKE---FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 226 (476)
Q Consensus 171 ---kea~LEeqIkqLe~EIs---~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa 226 (476)
....++..|++|+-|.. ....++..+..+..+|..++..-+..|.++..+|..|..
T Consensus 82 ~~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 82 ELTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 500
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=7.1e+02 Score=28.05 Aligned_cols=198 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011839 109 ATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 109 ~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
..+...-.+|.++++-..-.=+- .-+|++++.++.......-+-|+--++|+++.+..--.-. .+.|...|..
T Consensus 321 ~pll~kkl~Lr~~l~~~e~e~~e--~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~-----rk~ytqrikE 393 (521)
T KOG1937|consen 321 QPLLQKKLQLREELKNLETEDEE--IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ-----RKVYTQRIKE 393 (521)
T ss_pred hhHHHHHHHHHHHHhcccchHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH-----HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011839 189 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (476)
Q Consensus 189 ~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~Lee 268 (476)
...-....+.+|-+..++-.+|..++.+..+++.+-.+==|.++-++..-.-.+. .--.+...+-..=.++.+...
T Consensus 394 i~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR----~aykllt~iH~nc~ei~E~i~ 469 (521)
T KOG1937|consen 394 IDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVR----LAYKLLTRIHLNCMEILEMIR 469 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHHHHHHHHHHHhh
Q 011839 269 ENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 327 (476)
Q Consensus 269 EIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl~~en~~l~ekv 327 (476)
..-.++..+-.++.+|..=+-+...+ +.|....=.+++-++|++|...+
T Consensus 470 ~tg~~~revrdlE~qI~~E~~k~~l~----------slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 470 ETGALKREVRDLESQIYVEEQKQYLK----------SLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HcchHHHHHHHHHHHHhHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHH
Done!