Query 011840
Match_columns 476
No_of_seqs 255 out of 1660
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 1.4E-73 3.1E-78 600.8 25.7 414 10-476 192-621 (634)
2 KOG0782 Predicted diacylglycer 100.0 8E-63 1.7E-67 502.4 15.9 397 10-469 274-691 (1004)
3 PRK12361 hypothetical protein; 100.0 4E-44 8.7E-49 388.3 25.0 349 16-474 167-540 (547)
4 PRK11914 diacylglycerol kinase 100.0 5.3E-43 1.1E-47 353.6 27.6 286 79-474 7-302 (306)
5 PRK13057 putative lipid kinase 100.0 1.4E-42 3.1E-47 347.5 26.7 274 84-474 1-283 (287)
6 PRK13059 putative lipid kinase 100.0 4.3E-42 9.2E-47 345.3 27.6 282 80-475 1-292 (295)
7 TIGR03702 lip_kinase_YegS lipi 100.0 2.8E-42 6E-47 346.4 25.8 281 82-474 1-286 (293)
8 PRK13337 putative lipid kinase 100.0 5.5E-42 1.2E-46 345.9 24.8 283 80-474 1-292 (304)
9 PRK00861 putative lipid kinase 100.0 9.5E-42 2.1E-46 343.5 25.7 281 80-474 2-295 (300)
10 PRK13055 putative lipid kinase 100.0 8.9E-42 1.9E-46 348.6 24.5 287 80-474 2-299 (334)
11 PRK13054 lipid kinase; Reviewe 100.0 9E-41 1.9E-45 336.5 26.5 284 79-474 2-292 (300)
12 KOG1170 Diacylglycerol kinase 100.0 2.8E-43 6E-48 371.0 7.2 402 9-471 133-789 (1099)
13 TIGR00147 lipid kinase, YegS/R 100.0 3.2E-40 7E-45 331.1 25.5 282 80-473 1-292 (293)
14 COG1597 LCB5 Sphingosine kinas 100.0 3.1E-40 6.7E-45 332.0 24.7 285 80-475 2-295 (301)
15 PLN02958 diacylglycerol kinase 100.0 4.2E-39 9.2E-44 342.2 27.4 300 78-473 109-463 (481)
16 PLN02204 diacylglycerol kinase 100.0 4.5E-33 9.7E-38 296.1 27.0 318 76-474 155-596 (601)
17 PF00609 DAGK_acc: Diacylglyce 100.0 6.1E-33 1.3E-37 255.0 8.0 160 271-448 1-161 (161)
18 KOG1116 Sphingosine kinase, in 99.9 8.2E-27 1.8E-31 244.0 20.0 325 76-475 175-566 (579)
19 PF00781 DAGK_cat: Diacylglyce 99.9 4.8E-22 1.1E-26 176.1 11.3 125 82-230 1-127 (130)
20 smart00045 DAGKa Diacylglycero 99.9 1.5E-21 3.3E-26 179.2 10.6 160 271-448 1-160 (160)
21 smart00046 DAGKc Diacylglycero 99.8 1.1E-20 2.4E-25 166.3 11.2 101 84-201 1-101 (124)
22 KOG1115 Ceramide kinase [Lipid 99.8 1.8E-17 3.9E-22 166.0 18.1 308 77-468 155-501 (516)
23 KOG4435 Predicted lipid kinase 99.3 1.3E-11 2.7E-16 124.2 9.2 136 75-228 55-196 (535)
24 PRK03708 ppnK inorganic polyph 98.3 3.9E-06 8.4E-11 83.9 11.6 114 82-224 2-116 (277)
25 PRK02645 ppnK inorganic polyph 98.2 8.3E-06 1.8E-10 82.7 11.6 125 79-232 2-127 (305)
26 COG3199 Predicted inorganic po 97.8 0.00012 2.6E-09 73.9 11.0 58 146-220 99-157 (355)
27 PRK03378 ppnK inorganic polyph 97.6 0.00058 1.3E-08 68.9 11.8 124 80-230 5-129 (292)
28 PRK01231 ppnK inorganic polyph 97.5 0.0013 2.7E-08 66.6 12.6 127 80-232 4-130 (295)
29 PRK14075 pnk inorganic polypho 97.3 0.12 2.6E-06 51.2 23.2 42 423-474 194-235 (256)
30 PF01513 NAD_kinase: ATP-NAD k 97.0 0.0024 5.1E-08 64.2 8.5 66 146-228 75-140 (285)
31 PRK14077 pnk inorganic polypho 96.9 0.017 3.7E-07 58.1 13.5 124 78-231 8-131 (287)
32 PRK03372 ppnK inorganic polyph 96.8 0.021 4.5E-07 58.0 13.2 124 78-230 3-138 (306)
33 PRK02155 ppnK NAD(+)/NADH kina 96.7 0.025 5.3E-07 57.1 13.0 126 80-231 5-130 (291)
34 PRK02649 ppnK inorganic polyph 96.6 0.031 6.7E-07 56.8 12.6 128 80-230 1-134 (305)
35 PRK04539 ppnK inorganic polyph 96.5 0.033 7.2E-07 56.3 12.5 127 78-230 3-134 (296)
36 PRK01911 ppnK inorganic polyph 96.4 0.06 1.3E-06 54.4 13.2 122 82-232 2-132 (292)
37 PRK03501 ppnK inorganic polyph 96.3 0.06 1.3E-06 53.6 12.3 104 81-230 3-107 (264)
38 PLN02935 Bifunctional NADH kin 95.7 0.2 4.3E-06 53.9 13.8 129 79-227 193-325 (508)
39 PRK14076 pnk inorganic polypho 95.2 0.26 5.6E-06 54.4 13.3 120 79-227 289-411 (569)
40 PRK04885 ppnK inorganic polyph 94.7 0.42 9E-06 47.6 11.8 99 82-227 2-100 (265)
41 PLN02727 NAD kinase 94.2 0.4 8.8E-06 54.8 11.6 115 78-221 676-800 (986)
42 PRK00561 ppnK inorganic polyph 93.8 0.2 4.4E-06 49.7 7.5 35 147-188 33-67 (259)
43 PRK01185 ppnK inorganic polyph 93.0 1.6 3.4E-05 43.7 12.5 115 82-231 2-116 (271)
44 PLN02929 NADH kinase 91.7 0.94 2E-05 45.9 9.1 75 146-231 63-148 (301)
45 PRK02231 ppnK inorganic polyph 91.0 1.1 2.5E-05 44.7 8.8 35 147-188 42-76 (272)
46 KOG4180 Predicted kinase [Gene 90.5 0.31 6.8E-06 49.2 4.2 87 145-247 103-193 (395)
47 PRK04761 ppnK inorganic polyph 89.5 0.47 1E-05 46.7 4.6 36 146-188 24-59 (246)
48 COG0061 nadF NAD kinase [Coenz 88.6 5.7 0.00012 39.9 11.7 70 146-232 54-123 (281)
49 PF10254 Pacs-1: PACS-1 cytoso 82.7 3.1 6.8E-05 43.8 6.6 50 148-198 76-128 (414)
50 cd08170 GlyDH Glycerol dehydro 82.4 8 0.00017 39.9 9.6 94 81-194 23-119 (351)
51 cd08186 Fe-ADH8 Iron-containin 82.2 6.9 0.00015 41.0 9.1 105 80-196 26-147 (383)
52 cd08197 DOIS 2-deoxy-scyllo-in 81.5 4.9 0.00011 41.8 7.6 96 81-191 24-125 (355)
53 cd08172 GlyDH-like1 Glycerol d 81.5 8 0.00017 39.9 9.2 91 81-194 24-118 (347)
54 cd08180 PDD 1,3-propanediol de 79.8 7.9 0.00017 39.6 8.4 101 81-194 23-127 (332)
55 cd07766 DHQ_Fe-ADH Dehydroquin 79.7 6.6 0.00014 40.0 7.8 91 81-189 24-117 (332)
56 cd08187 BDH Butanol dehydrogen 77.8 9.8 0.00021 39.8 8.5 105 81-197 29-149 (382)
57 cd08194 Fe-ADH6 Iron-containin 77.8 8.1 0.00018 40.3 7.9 101 81-194 24-140 (375)
58 cd08171 GlyDH-like2 Glycerol d 77.3 5.7 0.00012 40.9 6.5 93 81-193 23-119 (345)
59 TIGR03405 Phn_Fe-ADH phosphona 77.0 17 0.00037 37.6 10.0 103 81-195 24-145 (355)
60 cd08181 PPD-like 1,3-propanedi 76.6 10 0.00022 39.2 8.2 104 81-196 26-144 (357)
61 cd08551 Fe-ADH iron-containing 76.0 8.9 0.00019 39.8 7.6 103 81-196 24-142 (370)
62 cd08183 Fe-ADH2 Iron-containin 75.5 18 0.00039 37.7 9.8 99 81-195 23-140 (374)
63 cd08173 Gro1PDH Sn-glycerol-1- 75.4 25 0.00054 36.1 10.6 88 81-189 26-113 (339)
64 cd08169 DHQ-like Dehydroquinat 75.1 11 0.00024 38.9 7.9 97 81-192 24-125 (344)
65 cd08179 NADPH_BDH NADPH-depend 73.1 16 0.00035 38.0 8.7 103 81-196 24-146 (375)
66 cd08177 MAR Maleylacetate redu 73.0 17 0.00036 37.4 8.6 90 81-190 24-114 (337)
67 cd08176 LPO Lactadehyde:propan 73.0 11 0.00023 39.5 7.3 105 81-198 29-149 (377)
68 cd08185 Fe-ADH1 Iron-containin 72.7 15 0.00031 38.4 8.2 106 81-198 26-152 (380)
69 PF00731 AIRC: AIR carboxylase 72.1 18 0.00039 32.9 7.6 80 92-189 8-89 (150)
70 COG1454 EutG Alcohol dehydroge 71.7 23 0.00049 37.2 9.2 106 80-198 29-150 (377)
71 PRK15138 aldehyde reductase; P 70.8 20 0.00042 37.7 8.7 104 81-196 30-150 (387)
72 KOG2178 Predicted sugar kinase 69.4 8.7 0.00019 40.1 5.4 60 147-223 168-227 (409)
73 cd08195 DHQS Dehydroquinate sy 69.2 15 0.00033 37.8 7.4 95 80-186 24-119 (345)
74 PRK09423 gldA glycerol dehydro 69.1 36 0.00078 35.3 10.2 94 81-194 30-126 (366)
75 cd08189 Fe-ADH5 Iron-containin 68.6 28 0.00061 36.3 9.2 104 80-196 26-146 (374)
76 PF00465 Fe-ADH: Iron-containi 67.9 16 0.00035 37.8 7.3 104 82-198 23-143 (366)
77 cd08550 GlyDH-like Glycerol_de 67.7 28 0.0006 35.9 8.9 94 81-194 23-119 (349)
78 PRK00002 aroB 3-dehydroquinate 67.5 18 0.00039 37.4 7.5 98 80-192 31-134 (358)
79 PRK09860 putative alcohol dehy 66.1 31 0.00067 36.1 9.0 105 81-198 32-152 (383)
80 cd08549 G1PDH_related Glycerol 65.2 23 0.0005 36.3 7.7 89 81-187 25-113 (332)
81 cd08182 HEPD Hydroxyethylphosp 64.8 27 0.00059 36.2 8.3 98 81-194 24-141 (367)
82 cd08178 AAD_C C-terminal alcoh 64.5 33 0.00072 36.0 8.9 102 81-196 22-151 (398)
83 cd08192 Fe-ADH7 Iron-containin 64.2 28 0.00062 36.1 8.3 101 81-194 25-145 (370)
84 cd08184 Fe-ADH3 Iron-containin 63.5 35 0.00076 35.3 8.7 49 147-196 81-143 (347)
85 TIGR01357 aroB 3-dehydroquinat 63.4 25 0.00054 36.1 7.6 91 81-186 21-115 (344)
86 cd08174 G1PDH-like Glycerol-1- 61.4 61 0.0013 33.0 10.0 37 147-190 75-111 (331)
87 PRK06203 aroB 3-dehydroquinate 61.1 54 0.0012 34.5 9.7 104 80-191 42-152 (389)
88 PF13685 Fe-ADH_2: Iron-contai 60.5 14 0.00031 36.4 4.9 93 81-191 20-112 (250)
89 PRK15454 ethanol dehydrogenase 60.5 47 0.001 35.0 9.1 91 98-198 64-170 (395)
90 cd08198 DHQS-like2 Dehydroquin 58.9 78 0.0017 33.1 10.3 100 80-187 30-134 (369)
91 TIGR02638 lactal_redase lactal 58.6 39 0.00084 35.3 8.1 104 80-196 29-150 (379)
92 cd08191 HHD 6-hydroxyhexanoate 58.4 35 0.00077 35.7 7.8 102 81-196 23-141 (386)
93 PRK10624 L-1,2-propanediol oxi 58.1 36 0.00079 35.5 7.8 104 81-197 31-152 (382)
94 cd08175 G1PDH Glycerol-1-phosp 57.3 29 0.00062 35.7 6.8 88 81-187 24-113 (348)
95 PRK00843 egsA NAD(P)-dependent 57.2 49 0.0011 34.1 8.5 90 81-191 35-124 (350)
96 cd08193 HVD 5-hydroxyvalerate 56.8 39 0.00085 35.2 7.8 101 81-194 27-143 (376)
97 cd08199 EEVS 2-epi-5-epi-valio 54.2 50 0.0011 34.3 7.9 95 80-186 26-122 (354)
98 cd08188 Fe-ADH4 Iron-containin 53.1 88 0.0019 32.6 9.7 101 81-194 29-145 (377)
99 PF00782 DSPc: Dual specificit 51.0 4.8 0.0001 34.9 -0.2 34 16-49 65-99 (133)
100 PLN02834 3-dehydroquinate synt 50.4 62 0.0014 34.6 8.1 95 80-187 100-198 (433)
101 cd08190 HOT Hydroxyacid-oxoaci 49.7 91 0.002 33.0 9.2 102 81-195 24-147 (414)
102 TIGR02482 PFKA_ATP 6-phosphofr 49.7 75 0.0016 32.3 8.2 41 146-193 90-130 (301)
103 PLN00180 NDF6 (NDH-dependent f 49.2 3.9 8.5E-05 37.0 -1.0 16 152-167 129-144 (180)
104 PRK10586 putative oxidoreducta 49.0 1.1E+02 0.0025 31.7 9.7 89 81-191 35-123 (362)
105 PTZ00286 6-phospho-1-fructokin 47.7 55 0.0012 35.3 7.2 51 146-198 175-228 (459)
106 COG2453 CDC14 Predicted protei 46.5 5.8 0.00013 37.0 -0.3 34 15-48 96-130 (180)
107 smart00195 DSPc Dual specifici 45.6 6.3 0.00014 34.4 -0.3 33 16-48 70-103 (138)
108 cd00763 Bacterial_PFK Phosphof 44.1 1.1E+02 0.0023 31.4 8.4 40 146-193 91-130 (317)
109 PF12219 End_tail_spike: Catal 42.2 14 0.00031 32.8 1.4 14 148-161 85-98 (160)
110 PRK14021 bifunctional shikimat 41.7 1.7E+02 0.0036 32.3 10.0 43 147-194 269-313 (542)
111 TIGR01162 purE phosphoribosyla 40.9 1.4E+02 0.0031 27.4 7.7 75 97-189 11-87 (156)
112 COG1979 Uncharacterized oxidor 40.1 88 0.0019 32.3 6.8 79 80-169 29-111 (384)
113 PRK03202 6-phosphofructokinase 40.0 1.2E+02 0.0026 31.1 8.0 40 146-193 92-131 (320)
114 TIGR02483 PFK_mixed phosphofru 39.8 1.4E+02 0.0029 30.8 8.4 45 146-198 93-140 (324)
115 cd00363 PFK Phosphofructokinas 39.5 1.3E+02 0.0028 31.1 8.2 46 146-193 91-136 (338)
116 PRK13805 bifunctional acetalde 38.7 1.4E+02 0.0029 35.0 9.1 74 80-167 480-558 (862)
117 cd08196 DHQS-like1 Dehydroquin 38.5 1.8E+02 0.004 30.0 9.2 91 81-186 20-110 (346)
118 PLN02564 6-phosphofructokinase 35.2 1.6E+02 0.0035 32.0 8.3 46 146-193 175-220 (484)
119 cd00127 DSPc Dual specificity 34.7 13 0.00027 32.3 -0.1 32 17-48 74-106 (139)
120 cd00764 Eukaryotic_PFK Phospho 34.5 1.6E+02 0.0034 34.0 8.5 47 146-193 477-523 (762)
121 PRK06756 flavodoxin; Provision 33.7 1.7E+02 0.0038 25.7 7.2 29 80-110 1-29 (148)
122 PRK06555 pyrophosphate--fructo 32.9 1.7E+02 0.0036 31.2 7.8 46 146-193 111-156 (403)
123 KOG1719 Dual specificity phosp 30.7 21 0.00045 32.8 0.6 33 16-48 101-134 (183)
124 PRK14071 6-phosphofructokinase 29.9 2.1E+02 0.0045 29.9 8.0 46 146-198 106-154 (360)
125 PRK06830 diphosphate--fructose 29.7 2.3E+02 0.0051 30.4 8.4 51 146-198 171-224 (443)
126 PRK05948 precorrin-2 methyltra 28.4 4.2E+02 0.0092 25.8 9.4 40 146-186 91-130 (238)
127 COG0337 AroB 3-dehydroquinate 28.2 4.3E+02 0.0093 27.7 9.7 97 78-186 31-128 (360)
128 PRK14072 6-phosphofructokinase 27.1 2.6E+02 0.0056 29.8 8.2 46 146-193 102-147 (416)
129 COG0371 GldA Glycerol dehydrog 26.7 2.8E+02 0.006 29.0 8.1 92 81-193 31-123 (360)
130 cd00764 Eukaryotic_PFK Phospho 24.2 3E+02 0.0064 31.8 8.4 48 146-193 96-158 (762)
131 PTZ00393 protein tyrosine phos 23.7 24 0.00052 34.6 -0.3 30 18-47 164-194 (241)
132 PLN02499 glycerol-3-phosphate 23.0 32 0.00069 37.4 0.4 15 147-161 464-478 (498)
133 TIGR02478 6PF1K_euk 6-phosphof 22.9 2.8E+02 0.006 32.0 7.9 70 132-217 84-174 (745)
134 TIGR00730 conserved hypothetic 22.8 1.1E+02 0.0023 28.6 3.9 48 127-187 17-66 (178)
135 PLN02948 phosphoribosylaminoim 22.2 5.3E+02 0.012 28.7 9.8 89 79-189 409-499 (577)
136 COG0205 PfkA 6-phosphofructoki 22.0 3.9E+02 0.0085 27.8 8.2 41 146-193 93-133 (347)
137 PRK12613 galactose-6-phosphate 22.0 2E+02 0.0044 25.9 5.3 39 96-137 11-49 (141)
138 PLN02884 6-phosphofructokinase 20.9 3.7E+02 0.0079 28.7 7.8 46 146-193 142-187 (411)
139 PF12138 Spherulin4: Spherulat 20.0 1.2E+02 0.0027 29.9 3.9 20 77-96 27-46 (253)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-73 Score=600.78 Aligned_cols=414 Identities=36% Similarity=0.609 Sum_probs=333.1
Q ss_pred ccccchhee---hhhhcCCce-eeecccccccccccccchhhhhhhhh-hhcCC-CCCC-----CCCCCCccccCCCCCC
Q 011840 10 IAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAI-RRKEG-EPPA-----DTCQSDVIVDGNGVQP 78 (476)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~-~~~~-----~~~~~~~~~~~~~~~~ 78 (476)
++.+.|.|+ -|.+|-... -+|+++.+++++..|.+++++.+..+ .+... ...+ ++.... .......+
T Consensus 192 ~~~~~c~~~~~~~h~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 269 (634)
T KOG1169|consen 192 LTGPRCGWCQIRVHDKCKSELSQECDLGELKDHILPPSTLRPARTARVASDHSGLPGEKSEEVTDAKKMQ--QLLVTDPP 269 (634)
T ss_pred ccccccceeeeeeecchHHHHhhhccChhhhhccCCceeeeccccccccccccccccccccccccccccc--ccccCCCC
Confidence 446777886 344554433 59999999999999999999876631 00000 0000 000000 01135567
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeec-CcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVK-PHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~-p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
+..|++|||||+||+++|+.+.++++.+|++.||||+.... |.. ++. +.++ .+..+|+|||||
T Consensus 270 ~~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~----gL~----l~~~--------~~~~riLVcGGD 333 (634)
T KOG1169|consen 270 DWRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRP----GLT----LFRD--------VPDFRILVCGGD 333 (634)
T ss_pred CCcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCch----hHH----HHHh--------CCcceEEEecCC
Confidence 88999999999999999999999999999999999998764 543 322 3322 245599999999
Q ss_pred hhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCC
Q 011840 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSG 237 (476)
Q Consensus 158 GTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~ 237 (476)
|||+|||+++.+++..+....||+||+|+||||||+|+|+||++||+++.+ +.++|+.+..+.+.++|.|+|.+.++++
T Consensus 334 GTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~ 412 (634)
T KOG1169|consen 334 GTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSG 412 (634)
T ss_pred CcchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeecccc
Confidence 999999999999876665678999999999999999999999999999877 8999999999999999999999988776
Q ss_pred cccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccc
Q 011840 238 EVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 317 (476)
Q Consensus 238 ~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~ 317 (476)
... |++++..++ ..+.+..+|+||||||+||+|+++||.+|+++|++|++|+.||++|+.+|++ -
T Consensus 413 ~~~--~~~~~~~~~------------~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q-~ 477 (634)
T KOG1169|consen 413 ELV--QYSLKPPEK------------GDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQ-E 477 (634)
T ss_pred ccc--cccccCCCc------------CCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecch-h
Confidence 544 666543311 1223468999999999999999999999999999999999999999999984 4
Q ss_pred ccccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCe
Q 011840 318 WFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGL 397 (476)
Q Consensus 318 ~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGl 397 (476)
+|++.|++ ++ +.+++. .+.+|+.++++.++.+|+++|++|||||.++||+..+++.+.+++..++.|||+
T Consensus 478 ~f~~~ck~------~~--~~i~i~--~~~d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgl 547 (634)
T KOG1169|consen 478 TFAARCKN------LH--LHIKIE--LDGDGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGL 547 (634)
T ss_pred hHHHhhcC------Cc--cceEEE--EcccceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCCCcCe
Confidence 68888863 21 222222 234688888888999999999999999999999999999999999999999999
Q ss_pred EEEEEEccchHHHHHHHhhccceeEee----EeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccccccc
Q 011840 398 LEIFGLKQGWHASFVMVELISAKHIAQ----AAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMI 473 (476)
Q Consensus 398 LeVv~l~~~~~~~~~~~~l~~g~~l~q----~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~ 473 (476)
+||+++++.||..+++.+|.+++|++| +.+++|... +.+|||||||||+|||+ .|+|++.+.+.+|+
T Consensus 548 iEvvgv~~~~h~~~~qvgL~~a~rigQ~~a~~~~~~i~~~----k~~PMQiDGEPW~Q~p~-----tI~Ithk~q~~mL~ 618 (634)
T KOG1169|consen 548 IEVVGVQDSWHLLQEQVGLESALRIGQRLAQCSERVIGTK----KTFPMQIDGEPWMQPPC-----TIEITHKNQAPMLM 618 (634)
T ss_pred EEEEEeccchhhhhhhhccchhhHHHHHhhccEEEEeccc----cCcceecCCccccCCCc-----eEEEEecchHhhhh
Confidence 999999999999999999999999986 233445544 89999999999999985 39999999999998
Q ss_pred cCC
Q 011840 474 SGE 476 (476)
Q Consensus 474 ~~~ 476 (476)
+++
T Consensus 619 ~~~ 621 (634)
T KOG1169|consen 619 KAA 621 (634)
T ss_pred ccc
Confidence 753
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8e-63 Score=502.38 Aligned_cols=397 Identities=29% Similarity=0.484 Sum_probs=294.0
Q ss_pred ccccchheehhh-----hcCCce-e--eecccccccccccccchhhhhhhhh-------------hhcCCCCCCCCCCCC
Q 011840 10 IAARSSMIDSIR-----GCGLSG-M--RIDKEDLRRKLSIPEYLRVAMSNAI-------------RRKEGEPPADTCQSD 68 (476)
Q Consensus 10 ~~~~~~~~~~~~-----~~~~~~-~--~~~~~~~~~~~~~~~y~~~~~~~~~-------------~~~~~~~~~~~~~~~ 68 (476)
+-|-||-|+.+- .|=.-- + .|.+|.+..+|++|+||+...+-.. ++|.++.+......+
T Consensus 274 ivAisCSWCKqayH~KvtCFml~~iEEpCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~r 353 (1004)
T KOG0782|consen 274 IVAISCSWCKQAYHLKVTCFMLDKIEEPCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGR 353 (1004)
T ss_pred EEEEEehHHHHHhhcchhhhhhhhhhccccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCC
Confidence 556677775332 232111 1 7999999999999999987654321 111111111122344
Q ss_pred ccccCCCCCCCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCc
Q 011840 69 VIVDGNGVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK 148 (476)
Q Consensus 69 ~~~~~~~~~~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~ 148 (476)
.+.++..++++++|++|||||+|||++|.+.++.+.++|+++||||++...|.. +-++-+ ...+
T Consensus 354 pFvikPtsSplmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFDlsq~GPK~--------aLEmyR--------KV~n 417 (1004)
T KOG0782|consen 354 PFVIKPTSSPLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFDLSQLGPKF--------ALEMYR--------KVVN 417 (1004)
T ss_pred ceEEccCCCCCCCceEEEecCCCCCcchHHHHHHHHHhcChhhheehhccCcHH--------HHHHHH--------hccc
Confidence 555677888999999999999999999999999999999999999999876653 233322 2346
Q ss_pred ceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeee
Q 011840 149 MRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSW 228 (476)
Q Consensus 149 ~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~ 228 (476)
.||++|||||||+|+|..|..++. .+.||+||+|+||||||||+|+||++|.++ .+.++|+++.+|.++.+|.|
T Consensus 418 LRILaCGGDGTVGWiLStLD~L~l---~p~PPvailPLGTGNDLARtlnWGGgytDE---PvSkil~~ve~gtvVqLDRW 491 (1004)
T KOG0782|consen 418 LRILACGGDGTVGWILSTLDNLNL---PPYPPVAILPLGTGNDLARTLNWGGGYTDE---PVSKILQAVEHGTVVQLDRW 491 (1004)
T ss_pred eEEEEecCCCceeehhhhhhhcCC---CCCCCeeEeecCCcchHHHhcccCCCcCcc---hHHHHHHHHhcCcEEeeeee
Confidence 899999999999999999998753 578999999999999999999999999986 47888999999999999999
Q ss_pred EEEEecCCCcccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCcee
Q 011840 229 HAVIQMPSGEVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLI 308 (476)
Q Consensus 229 ~v~~~~~~~~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~ 308 (476)
.+.+ .|++... .-++-+. +...+| -.+|.||||+||||+|..+||++|+.+|++|++|++||++
T Consensus 492 ~lhv-EpNp~~~-------pEe~ddG--~~~~LP------L~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmf 555 (1004)
T KOG0782|consen 492 RLHV-EPNPSCN-------PEEEDDG--MQSALP------LTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMF 555 (1004)
T ss_pred eecc-cCCCCCC-------hhhhccc--chhccc------hhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhh
Confidence 9987 3433110 0000000 111222 2589999999999999999999999999999999999999
Q ss_pred eecccccccccccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCC
Q 011840 309 YSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGF 388 (476)
Q Consensus 309 Y~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~ 388 (476)
|...++..++.. .++.+.+.+++.++.+|.. -...+ -+...|+++|+++|.+|.+|||++.. ...|
T Consensus 556 YaG~afsDfl~r-------SskDL~khi~vvCDG~DlT-PkIqe--LK~qCivFlNIprYcaGTmPWG~pgd----hhDf 621 (1004)
T KOG0782|consen 556 YAGLAFSDFLKR-------SSKDLCKHITVVCDGVDLT-PKIQE--LKLQCIVFLNIPRYCAGTMPWGEPGD----HHDF 621 (1004)
T ss_pred hcchhHHHHHhh-------hhHHhhhheEEEecCccCC-hhhhh--cccceEEEecchhhhcCccCCCCCCc----cccC
Confidence 999998875322 1234444455444333221 11112 34789999999999999999998642 2346
Q ss_pred ccccCCCCeEEEEEEccchHHHHHHHhhccceeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecc
Q 011840 389 VEAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPF 468 (476)
Q Consensus 389 ~~a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~ 468 (476)
..++.|||++||++|.-.+...+.+. .+|.+++||++|++.+. +.+|||+||||+...| ..|.|..-..
T Consensus 622 ePqrhdDGyvEViGFTmasLAALQvG--GhGERl~QCreV~l~T~----KaIPmQVDGEPC~LAp-----s~Iri~lrnq 690 (1004)
T KOG0782|consen 622 EPQRHDDGYVEVIGFTMASLAALQVG--GHGERLAQCREVRLITN----KAIPMQVDGEPCLLAP-----SIIRIGLRNQ 690 (1004)
T ss_pred CccccCCceEEEEeeeHHHHHHHhhc--CcchhhhhceeEEEEec----cccceeecCcchhcch-----hheEEeeccc
Confidence 77889999999999986443333222 38899999999999876 7899999999998775 4577665443
Q ss_pred c
Q 011840 469 Q 469 (476)
Q Consensus 469 ~ 469 (476)
+
T Consensus 691 a 691 (1004)
T KOG0782|consen 691 A 691 (1004)
T ss_pred c
Confidence 3
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=4e-44 Score=388.25 Aligned_cols=349 Identities=21% Similarity=0.227 Sum_probs=251.4
Q ss_pred heehhhhcCCce-eeecccccccccccccchhhhhh----h-hh---hhcCCCCCCCCCCCCccc--cCCCCCCCCceEE
Q 011840 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMS----N-AI---RRKEGEPPADTCQSDVIV--DGNGVQPPEAPMV 84 (476)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 84 (476)
.++..++.|.+| |||..|..||..++.+||....+ + +. +++-+.+..+..|++.++ .+......+++++
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~~~~~ 246 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIHKRAW 246 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccCCceE
Confidence 446778888889 99999999999999999985421 1 11 222233333333444443 2456666789999
Q ss_pred EEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHHHHH
Q 011840 85 VFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL 164 (476)
Q Consensus 85 vivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~vl 164 (476)
||+||+||++++.+.++++++.|.+. +++++ +.|+..++++++++++. .++.+.||+||||||||||+
T Consensus 247 iI~NP~SG~g~~~~~~~~i~~~L~~~--~~~~v-----~~t~~~~~a~~la~~~~-----~~~~d~Viv~GGDGTl~ev~ 314 (547)
T PRK12361 247 LIANPVSGGGKWQEYGEQIQRELKAY--FDLTV-----KLTTPEISAEALAKQAR-----KAGADIVIACGGDGTVTEVA 314 (547)
T ss_pred EEECCCCCCCcHHHHHHHHHHHHhcC--CceEE-----EECCCCccHHHHHHHHH-----hcCCCEEEEECCCcHHHHHH
Confidence 99999999999999999999999764 55554 34566788999998753 24568999999999999999
Q ss_pred HHHHhhhccCCCCCCcEEEecCCCCccccccc-CCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcccCCC
Q 011840 165 GSVGELNKQGREPVPPVAIIPLGTGNDLSRSF-GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (476)
Q Consensus 165 n~l~~~~~~~~~~~~plgiIPlGTgNdfarsl-g~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~~~~p 243 (476)
|+|.+ .++||||||+||||||||+| |++... .++.++++ .+.+|+++++|++.+
T Consensus 315 ~~l~~-------~~~~lgiiP~GTgNdfAr~L~gi~~~~-~~~~~a~~----~i~~g~~~~iD~g~v------------- 369 (547)
T PRK12361 315 SELVN-------TDITLGIIPLGTANALSHALFGLGSKL-IPVEQACD----NIIQGHTQRIDTARC------------- 369 (547)
T ss_pred HHHhc-------CCCCEEEecCCchhHHHHHhcCCCCCC-ccHHHHHH----HHHhCCCeEEEEEEE-------------
Confidence 99975 56899999999999999999 896421 34555554 466899999999873
Q ss_pred CCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccccccc
Q 011840 244 HSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPC 323 (476)
Q Consensus 244 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~~~ 323 (476)
| +++|+|++|+||||+|++.+++.+ |. ++ |+++|...+++.++..
T Consensus 370 --------------n----------~~~fln~agiG~da~v~~~~~~~~--k~-----~~-G~laY~~~~~~~l~~~--- 414 (547)
T PRK12361 370 --------------N----------DRLMLLLVGIGFEQKMIESADRER--KN-----AL-GQLAYLDGLWRAVNEN--- 414 (547)
T ss_pred --------------c----------CeEEEEEEeechhHHHHHhccHHH--Hh-----cc-CHHHHHHHHHHHhhcC---
Confidence 4 379999999999999999887654 21 22 7899998766543211
Q ss_pred CCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEE
Q 011840 324 ISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGL 403 (476)
Q Consensus 324 ~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l 403 (476)
+..++++. +| +.+... .++.+++++|+++|++... .|. +.+++|||+|||+++
T Consensus 415 ----------~~~~l~i~-~d--g~~~~~--~~~~~l~v~N~~~~~~~~~-~Gg-----------g~~~~~DG~Ldv~~v 467 (547)
T PRK12361 415 ----------ETLTLTVT-LD--DAEPQT--ISTHSLVVANAAPFTSLLA-QGG-----------GEPNMTDGLLDITWL 467 (547)
T ss_pred ----------CCeeEEEE-EC--CCCceE--EEEEEEEEEcCCCcccccc-cCC-----------CCCCCCCceeEEEEE
Confidence 12344443 33 322222 3578899999977654221 111 235799999999999
Q ss_pred ccch----HHHHH----HHhhc-----cceeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccc
Q 011840 404 KQGW----HASFV----MVELI-----SAKHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQS 470 (476)
Q Consensus 404 ~~~~----~~~~~----~~~l~-----~g~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~ 470 (476)
+... ++..+ +.+.. ...++.++++++|+++ +++++|+|||++.. +.++|++.|.+.
T Consensus 468 ~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~----~~~~~~iDGE~~~~-------~p~~i~v~p~al 536 (547)
T PRK12361 468 DSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQ----KPIKYVIDGELFED-------EDLTIEVQPASL 536 (547)
T ss_pred cCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeC----CceEEEECCccCCc-------eEEEEEEecCce
Confidence 8743 22222 22211 2346678999999976 67999999999874 569999999998
Q ss_pred cccc
Q 011840 471 LMIS 474 (476)
Q Consensus 471 ~~~~ 474 (476)
.++.
T Consensus 537 ~vlv 540 (547)
T PRK12361 537 KVFV 540 (547)
T ss_pred EEEe
Confidence 8774
No 4
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=5.3e-43 Score=353.55 Aligned_cols=286 Identities=22% Similarity=0.228 Sum_probs=216.9
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
.++++++|+||.||++++.+.++++.+.|..+ .+++.+ +.|+..++++++++++. ..+.|.||++||||
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~-g~~~~~-----~~t~~~~~~~~~a~~~~-----~~~~d~vvv~GGDG 75 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVE-----IVGTDAHDARHLVAAAL-----AKGTDALVVVGGDG 75 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHc-CCeEEE-----EEeCCHHHHHHHHHHHH-----hcCCCEEEEECCch
Confidence 35899999999999999888999998888664 466554 34567789999998754 24568999999999
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCC-cHHHHHHHHHHHHHcCCceeeeeeEEEEecCCC
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSG 237 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~-~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~ 237 (476)
|+|+|+|+|.. .++|||+||+||+|||||+||+ |. ++.++++ .+..++++++|++++..
T Consensus 76 Ti~evv~~l~~-------~~~~lgiiP~GT~NdfAr~lg~----~~~~~~~a~~----~i~~g~~~~iDlg~v~~----- 135 (306)
T PRK11914 76 VISNALQVLAG-------TDIPLGIIPAGTGNDHAREFGI----PTGDPEAAAD----VIVDGWTETVDLGRIQD----- 135 (306)
T ss_pred HHHHHhHHhcc-------CCCcEEEEeCCCcchhHHHcCC----CCCCHHHHHH----HHHcCCceEEEEEEEec-----
Confidence 99999999974 5689999999999999999999 43 4555544 46689999999998642
Q ss_pred cccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccc
Q 011840 238 EVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQG 317 (476)
Q Consensus 238 ~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~ 317 (476)
.|+ ..++|+|++|+||||.|++..++.|+ ++ ++++|...+++.+
T Consensus 136 -------------------~~~--------~~~~f~n~~~~G~~a~v~~~~~~~k~--------~~-G~~aY~~~~l~~l 179 (306)
T PRK11914 136 -------------------DDG--------IVKWFGTVAATGFDSLVTDRANRMRW--------PH-GRMRYNLAMLAEL 179 (306)
T ss_pred -------------------CCC--------CcEEEEEEEeeehHHHHHHHHHhccc--------cC-CchhhHHHHHHHH
Confidence 011 14799999999999999988765431 22 7789998877654
Q ss_pred ccccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCe
Q 011840 318 WFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGL 397 (476)
Q Consensus 318 ~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGl 397 (476)
+.. +.+++++. ++ +++.++ .++.++.|+|+++||||+.+ + |+|+++||+
T Consensus 180 ~~~-------------~~~~~~i~-~d--g~~~~~--~~~~~~~v~N~~~~GG~~~~----~---------p~a~~~DG~ 228 (306)
T PRK11914 180 SKL-------------RPLPFRLV-LD--GTEEIV--TDLTLAAFGNTRSYGGGMLI----C---------PNADHTDGL 228 (306)
T ss_pred Hhc-------------CCCcEEEE-Ee--CCeEEE--eeEEEEEEeCcccccCCcee----C---------CCCcCCCCc
Confidence 211 12344443 33 224433 46889999999999999875 3 589999999
Q ss_pred EEEEEEccchHHH--HHHHhhccce-------eEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecc
Q 011840 398 LEIFGLKQGWHAS--FVMVELISAK-------HIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPF 468 (476)
Q Consensus 398 LeVv~l~~~~~~~--~~~~~l~~g~-------~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~ 468 (476)
|||++++....+. .++..+..|+ +..++++++|++. ++++++|||+... +.++|+++|.
T Consensus 229 ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-----~~~~~~DGE~~~~-------~p~~i~v~p~ 296 (306)
T PRK11914 229 LDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-----GINAYADGDFACP-------LPAEISAVPG 296 (306)
T ss_pred EEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-----CcceecCCCcCCC-------CceEEEEEcC
Confidence 9999998754443 3445555554 3468899999864 3689999999864 3499999999
Q ss_pred cccccc
Q 011840 469 QSLMIS 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+..++.
T Consensus 297 al~v~v 302 (306)
T PRK11914 297 ALQILR 302 (306)
T ss_pred eEEEEC
Confidence 988875
No 5
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=347.46 Aligned_cols=274 Identities=20% Similarity=0.245 Sum_probs=208.8
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHHHH
Q 011840 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (476)
Q Consensus 84 lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~v 163 (476)
++|+||.||+++ +.++++++.|..+ .+++.. ..|+..+++++++++. ..+.+.||++|||||||+|
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~-g~~~~~-----~~t~~~~~a~~~~~~~------~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAA-GLELVE-----PPAEDPDDLSEVIEAY------ADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHc-CCeEEE-----EecCCHHHHHHHHHHH------HcCCCEEEEECchHHHHHH
Confidence 489999999765 4678888888764 356554 3356778999988763 2457899999999999999
Q ss_pred HHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcccCCC
Q 011840 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (476)
Q Consensus 164 ln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~~~~p 243 (476)
+|+|.. .++|||+||+||||||||+||+ |.++.++++ .+..++++++|++++
T Consensus 67 ~~~l~~-------~~~~lgiiP~GT~Ndfar~Lg~----~~~~~~a~~----~i~~~~~~~vD~g~~------------- 118 (287)
T PRK13057 67 APALVE-------TGLPLGILPLGTANDLARTLGI----PLDLEAAAR----VIATGQVRRIDLGWV------------- 118 (287)
T ss_pred HHHHhc-------CCCcEEEECCCCccHHHHHcCC----CCCHHHHHH----HHHcCCeEEeeEEEE-------------
Confidence 999975 4689999999999999999999 556666654 456899999999874
Q ss_pred CCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccccccc
Q 011840 244 HSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPC 323 (476)
Q Consensus 244 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~~~ 323 (476)
| ++||+|++|+||||.|++.++..+ | .++ |+++|+..+++.++..
T Consensus 119 --------------~----------~~~f~n~~g~G~da~v~~~~~~~~--k-----~~~-G~~aY~~~~~~~l~~~--- 163 (287)
T PRK13057 119 --------------N----------GHYFFNVASLGLSAELARRLTKEL--K-----RRW-GTLGYAIAALRVLRRS--- 163 (287)
T ss_pred --------------C----------CEEEEEEEecCccHHHHHHhhHHh--h-----ccC-ChhHHHHHHHHHHhhC---
Confidence 3 379999999999999999887543 1 123 7899998877654211
Q ss_pred CCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEE
Q 011840 324 ISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGL 403 (476)
Q Consensus 324 ~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l 403 (476)
+.+++++. + |++... .+..+++|+|+++||||+.+ + |.++++||+|||+++
T Consensus 164 ----------~~~~~~l~-~---d~~~~~--~~~~~~~v~N~~~~gg~~~~----~---------p~a~~~DG~ldv~~v 214 (287)
T PRK13057 164 ----------RPFTAEIE-H---DGRTER--VKTLQVAVGNGRYYGGGMTV----A---------HDATIDDGRLDLYSL 214 (287)
T ss_pred ----------CCeEEEEE-E---CCEEEE--EEEEEEEEecCcccCCCccc----C---------CCCCCCCceEEEEEe
Confidence 12344433 2 234443 35778899999999999875 3 589999999999999
Q ss_pred ccchH--HHHHHHhhccc-------eeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccccccc
Q 011840 404 KQGWH--ASFVMVELISA-------KHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMIS 474 (476)
Q Consensus 404 ~~~~~--~~~~~~~l~~g-------~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~~ 474 (476)
+.... +..++..+..| .+..++++++|+++ +++++|+|||.+... .++|+++|.+..++.
T Consensus 215 ~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~----~~~~~~~DGE~~~~~-------p~~i~v~p~al~v~~ 283 (287)
T PRK13057 215 EVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTR----KPRPINTDGELTTYT-------PAHFRVLPKALRVLA 283 (287)
T ss_pred cCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeC----CCcEEeeCCccCCCC-------CEEEEEECCeEEEEc
Confidence 87443 33344444444 44578999999986 678999999998743 499999999988774
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.3e-42 Score=345.31 Aligned_cols=282 Identities=19% Similarity=0.180 Sum_probs=208.3
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++++|+||.||++++.+.++++++.|.+. .+++....++ ...+. +.++++. ..+.+.||++|||||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~~~-----~~~~~-~~~~~~~-----~~~~d~vi~~GGDGT 68 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEK-GYLVVPYRIS-----LEYDL-KNAFKDI-----DESYKYILIAGGDGT 68 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHC-CcEEEEEEcc-----CcchH-HHHHHHh-----hcCCCEEEEECCccH
Confidence 4689999999999998888888888888664 4665543222 22232 3343332 245689999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~ 239 (476)
+|+|+|+|.+. ..++||||||+||||||||+||+ |.++.++++. +..|+++++|++++
T Consensus 69 v~evv~gl~~~-----~~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~~~----i~~g~~~~vDlg~v--------- 126 (295)
T PRK13059 69 VDNVVNAMKKL-----NIDLPIGILPVGTANDFAKFLGM----PTDIGEACEQ----ILKSKPKKVDLGKI--------- 126 (295)
T ss_pred HHHHHHHHHhc-----CCCCcEEEECCCCHhHHHHHhCC----CCCHHHHHHH----HHhCCcEEeeEEEE---------
Confidence 99999999863 24689999999999999999998 6677666665 45799999999874
Q ss_pred cCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccc
Q 011840 240 VDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWF 319 (476)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~ 319 (476)
| +++|+|++|+||||+|++.++... | .++ |+++|...+++.++.
T Consensus 127 ------------------~----------~~~f~n~~~~G~~a~v~~~~~~~~--k-----~~~-G~~aY~~~~~~~l~~ 170 (295)
T PRK13059 127 ------------------N----------DKYFINVASTGLFTDVSQKTDVNL--K-----NTI-GKLAYYLKGLEELPN 170 (295)
T ss_pred ------------------C----------CEEEEEEEeeeechhhhhhccHHH--h-----hCc-chHHHHHHHHHHHhc
Confidence 3 379999999999999999886532 1 122 788999888776432
Q ss_pred ccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEE
Q 011840 320 LTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLE 399 (476)
Q Consensus 320 ~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLe 399 (476)
. +..+++++ + |++.++ .++.+++|+|++|||| +.+ + |.|+++||+||
T Consensus 171 ~-------------~~~~~~i~-~---d~~~~~--~~~~~~~v~N~~~~Gg-~~~----~---------p~a~~~DG~Ld 217 (295)
T PRK13059 171 F-------------RKLKVKVT-S---EEVNFD--GDMYLMLVFNGQTAGN-FNL----A---------YKAEVDDGLLD 217 (295)
T ss_pred C-------------CCeeEEEE-E---CCEEEE--eeEEEEEEEcCccccC-ccc----C---------CcccCCCCeEE
Confidence 1 12344443 2 235443 4688899999998875 454 4 58999999999
Q ss_pred EEEEccchHHH--HHHHhhccc--------eeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccc
Q 011840 400 IFGLKQGWHAS--FVMVELISA--------KHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQ 469 (476)
Q Consensus 400 Vv~l~~~~~~~--~~~~~l~~g--------~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~ 469 (476)
|+++++...+. .++..+..| .++.++++++|++. +++++|+|||+... +.++|+++|.+
T Consensus 218 v~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~----~~~~~~~DGE~~~~-------~p~~i~v~p~a 286 (295)
T PRK13059 218 VIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESN----EEIVTDIDGERGPD-------FPLNIECIKGG 286 (295)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeC----CCceEEeCCCcCCC-------CcEEEEEecCe
Confidence 99998854443 344444444 44567889999876 57899999999764 34999999999
Q ss_pred cccccC
Q 011840 470 SLMISG 475 (476)
Q Consensus 470 ~~~~~~ 475 (476)
..++..
T Consensus 287 l~v~~p 292 (295)
T PRK13059 287 LKVLGI 292 (295)
T ss_pred eEEEec
Confidence 888753
No 7
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=2.8e-42 Score=346.36 Aligned_cols=281 Identities=19% Similarity=0.181 Sum_probs=206.9
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHH
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~ 161 (476)
++++|+||+||.. +.+.++.+.|.++ .+++++ +.|++.+|++++++++. ..+.+.|||+|||||+|
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~-g~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDE-GIQLHV-----RVTWEKGDAQRYVAEAL-----ALGVSTVIAGGGDGTLR 66 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHC-CCeEEE-----EEecCCCCHHHHHHHHH-----HcCCCEEEEEcCChHHH
Confidence 4789999998743 3455666667654 355554 34667799999998764 24578999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcccC
Q 011840 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVD 241 (476)
Q Consensus 162 ~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~~~ 241 (476)
+|+|+|..... ...+|||+||+||||||||+||+ |.++.++++. +..++++++|++.+
T Consensus 67 ev~ngl~~~~~---~~~~~lgiiP~GTgNdfAr~l~i----p~~~~~a~~~----i~~g~~~~iDlg~v----------- 124 (293)
T TIGR03702 67 EVATALAQIRD---DAAPALGLLPLGTANDFATAAGI----PLEPAKALKL----ALNGAAQPIDLARV----------- 124 (293)
T ss_pred HHHHHHHhhCC---CCCCcEEEEcCCchhHHHHhcCC----CCCHHHHHHH----HHhCCceeeeEEEE-----------
Confidence 99999975321 23578999999999999999999 5666666554 56799999999874
Q ss_pred CCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccccc
Q 011840 242 PPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLT 321 (476)
Q Consensus 242 ~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~ 321 (476)
|+ +++|+|.+|+||||+|++.+++.. | +..|+++|...+++.++.
T Consensus 125 ----------------~~---------~~~f~n~~~~G~da~v~~~~~~~~--k------~~~G~~aY~~~~l~~l~~-- 169 (293)
T TIGR03702 125 ----------------NG---------KHYFLNMATGGFGTRVTTETSEKL--K------KALGGAAYLITGLTRFSE-- 169 (293)
T ss_pred ----------------CC---------ccEEEEEeecccchHhhhhhhHHH--H------hccchHHHHHHHHHHHhh--
Confidence 32 269999999999999999987642 1 122789999887765421
Q ss_pred ccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEE
Q 011840 322 PCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIF 401 (476)
Q Consensus 322 ~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv 401 (476)
. +..++++ +.+ ++.+ ..++.+++|+|++|||||+.+ + |.|+++||+|||+
T Consensus 170 ----------~-~~~~~~i---~~~-~~~~--~~~~~~~~v~N~~~~GGg~~i----~---------P~A~~~DG~Ldv~ 219 (293)
T TIGR03702 170 ----------L-TAASCEF---RGP-DFHW--EGDFLALGIGNGRQAGGGQVL----C---------PDALINDGLLDVR 219 (293)
T ss_pred ----------C-CCeEEEE---EEC-CEEE--EeeEEEEEEECCCcCCCCcee----C---------CCCccCCceEEEE
Confidence 1 1233443 332 2332 246788999999999999975 4 6899999999999
Q ss_pred EEccchHHHHHHHhhcccee---E--eeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccccccc
Q 011840 402 GLKQGWHASFVMVELISAKH---I--AQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMIS 474 (476)
Q Consensus 402 ~l~~~~~~~~~~~~l~~g~~---l--~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~~ 474 (476)
+++..+.+..++..+..|.+ + .++++++|+++ +++++|+|||++.. +.++|+++|.+..++.
T Consensus 220 ~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~----~~~~~~vDGE~~~~-------~p~~i~v~p~al~v~~ 286 (293)
T TIGR03702 220 ILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAP----QPLTFNLDGEPLSG-------RHFRIEVLPGALRCHL 286 (293)
T ss_pred EeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeC----CCcEEEECCCcCCC-------ceEEEEEEcCeEEEEc
Confidence 99884434334455554432 2 35678888876 67999999999864 4599999999998875
No 8
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.5e-42 Score=345.90 Aligned_cols=283 Identities=18% Similarity=0.168 Sum_probs=215.1
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++++|+||+||++++.+.+..+.+.|.+. .+++.. +.|++.+|++++++++. ..+.+.||++|||||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~-~~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDGT 69 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQA-GYETSA-----HATTGPGDATLAAERAV-----ERKFDLVIAAGGDGT 69 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHc-CCEEEE-----EEecCCCCHHHHHHHHH-----hcCCCEEEEEcCCCH
Confidence 4689999999999988777888888877664 355544 34667899999998753 245789999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~ 239 (476)
||+|+|+|... ...+||||||.||||||||+||+ |.++.++++ .+..|.++++|++++
T Consensus 70 l~~vv~gl~~~-----~~~~~lgiiP~GT~NdfAr~lgi----~~~~~~a~~----~i~~g~~~~vDlg~v--------- 127 (304)
T PRK13337 70 LNEVVNGIAEK-----ENRPKLGIIPVGTTNDFARALHV----PRDIEKAAD----VIIEGHTVPVDIGKA--------- 127 (304)
T ss_pred HHHHHHHHhhC-----CCCCcEEEECCcCHhHHHHHcCC----CCCHHHHHH----HHHcCCeEEEEEEEE---------
Confidence 99999999863 24689999999999999999999 666666665 456899999999874
Q ss_pred cCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccc
Q 011840 240 VDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWF 319 (476)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~ 319 (476)
| +++|+|.+|+|+||+|++...... |. ++ ++++|...+++.++.
T Consensus 128 ------------------n----------~~~fln~~g~G~~a~v~~~~~~~~--k~-----~~-G~~aY~~~~~~~l~~ 171 (304)
T PRK13337 128 ------------------N----------NRYFINIAGGGRLTELTYEVPSKL--KT-----ML-GQLAYYLKGIEMLPS 171 (304)
T ss_pred ------------------C----------CEEEEeeehhhHHHHHHHhcCHHH--hc-----Cc-ccHHHHHHHHHHHhh
Confidence 3 379999999999999998876432 21 23 778998877654321
Q ss_pred ccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEE
Q 011840 320 LTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLE 399 (476)
Q Consensus 320 ~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLe 399 (476)
. +.+++++. + |++..+ .+..+++++|+++||||+.+ + |.+.++||+||
T Consensus 172 ------------~-~~~~~~i~-~---d~~~~~--~~~~~~~v~n~~~~gg~~~~----~---------p~a~~~DG~ld 219 (304)
T PRK13337 172 ------------L-KATDVRIE-Y---DGKLFQ--GEIMLFLLGLTNSVGGFEKL----A---------PDASLDDGYFD 219 (304)
T ss_pred ------------C-CCceEEEE-E---CCeEEE--eEEEEEEEEcCcccCCcccc----C---------CcccCCCCeEE
Confidence 1 12344443 2 345443 35788999999999999875 3 58999999999
Q ss_pred EEEEccchHH--HHHHHhhccce-------eEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccc
Q 011840 400 IFGLKQGWHA--SFVMVELISAK-------HIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQS 470 (476)
Q Consensus 400 Vv~l~~~~~~--~~~~~~l~~g~-------~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~ 470 (476)
|++++....+ ..++..+..|+ ++.++++++|+.+ +++++|+|||+... +.++|+.+|...
T Consensus 220 v~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~----~~~~~~iDGE~~~~-------~p~~i~v~p~al 288 (304)
T PRK13337 220 LIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSF----DKMQLNLDGEYGGK-------LPAEFENLYRHI 288 (304)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcC----CCCeEEeCCCcCCC-------CCEEEEEecceE
Confidence 9999874333 33444454443 4568899999976 67899999999874 349999999998
Q ss_pred cccc
Q 011840 471 LMIS 474 (476)
Q Consensus 471 ~~~~ 474 (476)
.++.
T Consensus 289 ~v~~ 292 (304)
T PRK13337 289 EVFV 292 (304)
T ss_pred EEEe
Confidence 8764
No 9
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=9.5e-42 Score=343.48 Aligned_cols=281 Identities=20% Similarity=0.207 Sum_probs=211.2
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
+++++||+||.||++++.+.+++++..|.+. +++.. +.|++.+|+.++++++. ..+.+.||++|||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~--~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE--MDLDI-----YLTTPEIGADQLAQEAI-----ERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc--CceEE-----EEccCCCCHHHHHHHHH-----hcCCCEEEEECChHH
Confidence 4789999999999998888888998888753 34433 34667789999998764 246789999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~ 239 (476)
+|+|+|+|.. .++|||+||+||||||||+||+ |.++.++++. +..|+++++|++.+
T Consensus 70 l~evv~~l~~-------~~~~lgviP~GTgNdfAr~lgi----~~~~~~a~~~----i~~g~~~~iDlg~v--------- 125 (300)
T PRK00861 70 LSAVAGALIG-------TDIPLGIIPRGTANAFAAALGI----PDTIEEACRT----ILQGKTRRVDVAYC--------- 125 (300)
T ss_pred HHHHHHHHhc-------CCCcEEEEcCCchhHHHHHcCC----CCCHHHHHHH----HHcCCcEEeeEEEE---------
Confidence 9999999975 4689999999999999999999 6666666654 56899999999874
Q ss_pred cCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccc
Q 011840 240 VDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWF 319 (476)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~ 319 (476)
| +++|+|.+|+||||+|++..++.. | .++ |+++|...+++.++.
T Consensus 126 ------------------n----------~~~fin~a~~G~~a~v~~~~~~~~--k-----~~~-G~~aY~~~~l~~l~~ 169 (300)
T PRK00861 126 ------------------N----------GQPMILLAGIGFEAETVEEADREA--K-----NRF-GILAYILSGLQQLRE 169 (300)
T ss_pred ------------------C----------CEEEEEEEeccHHHHHHHHhhHHH--H-----hcc-cHHHHHHHHHHHhcc
Confidence 3 379999999999999999876542 2 123 788999888765421
Q ss_pred ccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEE
Q 011840 320 LTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLE 399 (476)
Q Consensus 320 ~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLe 399 (476)
. +.++++++ ++ ++.++ .+..+++++|++++++.+. .| +|.++++||+||
T Consensus 170 ~-------------~~~~~~i~-~d---g~~~~--~~~~~i~v~N~~~~~~~~~-~g-----------~p~a~~~DG~ld 218 (300)
T PRK00861 170 L-------------ESFEVEIE-TE---DQIIT--TNAVAVTVANAAPPTSVLA-QG-----------PGAVIPDDGLLD 218 (300)
T ss_pred C-------------CCeeEEEE-EC---CeEEE--EEEEEEEEECCCCcccccc-cC-----------CCCCCCCCceEE
Confidence 1 12344443 22 34443 3577899999986643221 11 157899999999
Q ss_pred EEEEccchHHHH------HHHhhccce-------eEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEe
Q 011840 400 IFGLKQGWHASF------VMVELISAK-------HIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRV 466 (476)
Q Consensus 400 Vv~l~~~~~~~~------~~~~l~~g~-------~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~ 466 (476)
|++++....+.+ ++..+..|+ +..++++++|+++ +++++|+|||+... +.++|+++
T Consensus 219 v~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~----~~~~~~~DGE~~~~-------~p~~i~v~ 287 (300)
T PRK00861 219 VTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTD----PPQKVVIDGEVVGT-------TPIEIECL 287 (300)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeC----CCeEEEECCccCCC-------ceEEEEEE
Confidence 999988544432 233333443 4568999999986 67899999999863 45999999
Q ss_pred cccccccc
Q 011840 467 PFQSLMIS 474 (476)
Q Consensus 467 p~~~~~~~ 474 (476)
|.+..++.
T Consensus 288 p~al~v~~ 295 (300)
T PRK00861 288 PRSLKVFA 295 (300)
T ss_pred CCEEEEEe
Confidence 99988875
No 10
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=8.9e-42 Score=348.60 Aligned_cols=287 Identities=17% Similarity=0.185 Sum_probs=214.4
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
+++++||+||.||++++.+.+.+++++|.... +++.+.. .|+..++++++++++. ..+.+.|||+|||||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g-~~~~i~~----t~~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAG-YETSAFQ----TTPEPNSAKNEAKRAA-----EAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcC-CeEEEEE----eecCCccHHHHHHHHh-----hcCCCEEEEECCCCH
Confidence 47899999999999988889999999987653 5544321 1224578888887754 245789999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCC-cHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~-~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~ 238 (476)
+|+|+|+|... ...+||||||+||||||||+||+ |. ++.++++. +..++++++|++.+.
T Consensus 72 l~evvngl~~~-----~~~~~LgiiP~GTgNdfAr~Lgi----~~~~~~~a~~~----l~~g~~~~vD~g~v~------- 131 (334)
T PRK13055 72 INEVVNGIAPL-----EKRPKMAIIPAGTTNDYARALKI----PRDNPVEAAKV----ILKNQTIKMDIGRAN------- 131 (334)
T ss_pred HHHHHHHHhhc-----CCCCcEEEECCCchhHHHHHcCC----CCcCHHHHHHH----HHcCCcEEeeEEEEC-------
Confidence 99999999863 24689999999999999999999 65 56666554 567999999998741
Q ss_pred ccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccc
Q 011840 239 VVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 318 (476)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~ 318 (476)
| ++||+|.+|+||||.|++..+...+ .++ |+++|...+++.++
T Consensus 132 -------------------~----------~~~F~n~ag~G~da~v~~~~~~~~k-------~~~-G~laY~~~~~~~l~ 174 (334)
T PRK13055 132 -------------------E----------DKYFINIAAGGSLTELTYSVPSQLK-------SMF-GYLAYLAKGAELLP 174 (334)
T ss_pred -------------------C----------CcEEEEEehhccchHHHHhcCHHHH-------hhc-cHHHHHHHHHHHHH
Confidence 1 4799999999999999988775431 123 78899887766542
Q ss_pred cccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeE
Q 011840 319 FLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLL 398 (476)
Q Consensus 319 ~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlL 398 (476)
.. +..++++. ++ + +... .+..+++++|+++||||+.+ + |.++++||+|
T Consensus 175 ~~-------------~~~~~~i~-~d--~-~~~~--~~~~~~~v~n~~~~Gg~~~~----~---------p~a~~~DG~l 222 (334)
T PRK13055 175 RV-------------SPVPVRIT-YD--E-GVFE--GKISMFFLALTNSVGGFEQI----V---------PDAKLDDGKF 222 (334)
T ss_pred hc-------------CCeeEEEE-EC--C-EEEE--EEEEEEEEEcCcccCCcccc----C---------CCCcCCCceE
Confidence 11 12344443 32 2 3332 45788899999999999875 3 5899999999
Q ss_pred EEEEEccchHHH--HHHHhhcc-ce-------eEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecc
Q 011840 399 EIFGLKQGWHAS--FVMVELIS-AK-------HIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPF 468 (476)
Q Consensus 399 eVv~l~~~~~~~--~~~~~l~~-g~-------~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~ 468 (476)
||++++....+. .++..+.. |+ ++.++++++|++.. .+++++|+|||+... +.++|+++|.
T Consensus 223 dv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~--~~~~~~~iDGE~~~~-------~pv~i~v~p~ 293 (334)
T PRK13055 223 TLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLG--DDRLMVNLDGEYGGD-------APMTFENLKQ 293 (334)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCC--CCcceEeeCCCcCCC-------CcEEEEEEcC
Confidence 999998854433 33444444 43 44678999998752 146899999999864 3599999999
Q ss_pred cccccc
Q 011840 469 QSLMIS 474 (476)
Q Consensus 469 ~~~~~~ 474 (476)
+..++.
T Consensus 294 al~v~~ 299 (334)
T PRK13055 294 HIEFFA 299 (334)
T ss_pred eEEEEe
Confidence 988875
No 11
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=9e-41 Score=336.47 Aligned_cols=284 Identities=20% Similarity=0.204 Sum_probs=208.5
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
+++++++|+||++++ .+.+..+.+.|.++. +++.+ +.|+..+|+.++++++. ..+.+.||++||||
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELREAVGLLREEG-HTLHV-----RVTWEKGDAARYVEEAL-----ALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccc---hHHHHHHHHHHHHcC-CEEEE-----EEecCCCcHHHHHHHHH-----HcCCCEEEEECCcc
Confidence 478999999999863 245556666676543 55544 34667789999998764 24578999999999
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCc
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~ 238 (476)
|+|+|+|+|.+... ..++|||+||+||||||||+||+ |.++.++++. +..+++++||++.+
T Consensus 68 Tl~evv~~l~~~~~---~~~~~lgiiP~GTgNdfar~lgi----~~~~~~a~~~----i~~g~~~~iDlg~v-------- 128 (300)
T PRK13054 68 TINEVATALAQLEG---DARPALGILPLGTANDFATAAGI----PLEPDKALKL----AIEGRAQPIDLARV-------- 128 (300)
T ss_pred HHHHHHHHHHhhcc---CCCCcEEEEeCCcHhHHHHhcCC----CCCHHHHHHH----HHhCCceEEEEEEE--------
Confidence 99999999986321 24689999999999999999998 6677666654 56799999999874
Q ss_pred ccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccc
Q 011840 239 VVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 318 (476)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~ 318 (476)
|+ +++|+|.+|+||||+|++..++.. | .++ |+++|...+++.++
T Consensus 129 -------------------~~---------~~~f~n~~~~G~~a~v~~~~~~~~--k-----~~~-G~~~Y~~~~l~~l~ 172 (300)
T PRK13054 129 -------------------ND---------RTYFINMATGGFGTRVTTETPEKL--K-----AAL-GGVAYLIHGLMRMD 172 (300)
T ss_pred -------------------cC---------ceEEEEEeecchhHHHHHhhHHHH--H-----hcc-chHHHHHHHHHHHh
Confidence 32 239999999999999999886532 1 122 78899888776542
Q ss_pred cccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeE
Q 011840 319 FLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLL 398 (476)
Q Consensus 319 ~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlL 398 (476)
. . +.++++++ .+ ++..+ .++.+++|+|+++||||+.+ + |+++++||+|
T Consensus 173 ~------------~-~~~~~~i~---~d-~~~~~--~~~~~~~v~N~~~~ggg~~~----~---------p~a~~~DG~l 220 (300)
T PRK13054 173 T------------L-KPDRCEIR---GP-DFHWQ--GDALVIGIGNGRQAGGGQQL----C---------PEALINDGLL 220 (300)
T ss_pred h------------C-CCeEEEEE---eC-CcEEE--eeEEEEEEECCCcCCCCccc----C---------CCCcCCCCeE
Confidence 1 1 12344433 32 23332 46889999999999999875 3 5899999999
Q ss_pred EEEEEccchHHHHHHHhhccc-------eeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccccc
Q 011840 399 EIFGLKQGWHASFVMVELISA-------KHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSL 471 (476)
Q Consensus 399 eVv~l~~~~~~~~~~~~l~~g-------~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~ 471 (476)
||++++..+.+...+..+..| .+..++++++|++. +++++|+|||++.. +.++|+++|.+..
T Consensus 221 dv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~----~~~~~~iDGE~~~~-------~p~~i~v~p~al~ 289 (300)
T PRK13054 221 DLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAP----HELTFNLDGEPLSG-------RHFRIEVLPAALR 289 (300)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcC----CCCEEEeCCCcCCC-------ccEEEEEEcCeeE
Confidence 999998822222222233222 34568899999875 67999999999874 3499999999988
Q ss_pred ccc
Q 011840 472 MIS 474 (476)
Q Consensus 472 ~~~ 474 (476)
++.
T Consensus 290 vl~ 292 (300)
T PRK13054 290 CRL 292 (300)
T ss_pred EEe
Confidence 875
No 12
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=371.02 Aligned_cols=402 Identities=29% Similarity=0.483 Sum_probs=287.9
Q ss_pred cccccchhee---hhhhcCCce-eeecccccccccccccchhhhhhhhhhhcCCCCCCCCCCCCccccCCCCCCCCceEE
Q 011840 9 RIAARSSMID---SIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQSDVIVDGNGVQPPEAPMV 84 (476)
Q Consensus 9 ~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (476)
+..---|+|+ .|-.|-.+. .+|.+|.-+.-...|..|-....+... .... ...+.+-.+|++
T Consensus 133 rlqd~rclwc~~~vh~~c~~~~~~~cs~~~~~~svi~ptal~~~~~dg~~-----------v~~~---~a~~~~~~spll 198 (1099)
T KOG1170|consen 133 RLQDYRCLWCGCCVHDTCIGNLARACSLGHSALSVIPPTALKEVTPDGTA-----------VFWE---EAYGGPCGSPLL 198 (1099)
T ss_pred ccCCcceEeeccEeehhhhhhHHhhcccccccccccChhhhcccCCCcce-----------eehh---hhcCCCCCCcee
Confidence 3344456774 566676666 688888888888888777665444321 0011 123336679999
Q ss_pred EEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHHHHH
Q 011840 85 VFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL 164 (476)
Q Consensus 85 vivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~vl 164 (476)
||+|.+||..+|.+..+++..+|++.||||+....|+. ++..... -...+|+||||||+|+||+
T Consensus 199 v~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~----gL~~f~~------------~d~friLvcggdGsv~wvl 262 (1099)
T KOG1170|consen 199 VFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDF----GLTFFSH------------FESFRILVCGGDGSVGWVL 262 (1099)
T ss_pred EeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcch----hhhhhhc------------ccceEEEEecCCCCCcchH
Confidence 99999999999999999999999999999998777753 2222211 2456999999999999999
Q ss_pred HHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEec-C--C-----
Q 011840 165 GSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQM-P--S----- 236 (476)
Q Consensus 165 n~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~-~--~----- 236 (476)
..+..++. ..+..++++|+|||||+||.||||..|+.+.. +.++++....+.++++|.|.+-... | +
T Consensus 263 s~~ds~~l---h~kcql~vlplgtgndlarvlgwg~a~~ddt~--~p~il~~~eRastkmldrwsvm~~e~~~~~~~~~~ 337 (1099)
T KOG1170|consen 263 SAIDRLNL---HSKCQLAVLPLGTGNDLARVLGWGHAFYDDTL--LPQILRTMERASTKMLDRWSVMAIEGPQADAVRRY 337 (1099)
T ss_pred HHHHhccc---hhhcccccccCCChHHHHHHhcccccCchhhc--cHHHHHHHHhhhhhhhhcchhhhhhccccchHHHH
Confidence 99987653 57889999999999999999999988887653 4478888888999999999864321 1 0
Q ss_pred --------------------------------------------------------------------------------
Q 011840 237 -------------------------------------------------------------------------------- 236 (476)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (476)
T Consensus 338 ~~~v~~~~~~~e~~~i~~~e~q~~t~l~kiL~s~~~t~~i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k~sp 417 (1099)
T KOG1170|consen 338 IEKVETFLEAEETWDIIHAENQLATTLRKILHSVSHTYSILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPKCSP 417 (1099)
T ss_pred HHHHHHhcccchhhhhhhhhhhhhhhHHhhhccccchhhhhhhccccchHHHHHHHHhhcccchhccCCchhhccccCCc
Confidence
Q ss_pred -------------------------------------------Ccc----------------------------------
Q 011840 237 -------------------------------------------GEV---------------------------------- 239 (476)
Q Consensus 237 -------------------------------------------~~~---------------------------------- 239 (476)
|..
T Consensus 418 a~e~~~~~~~~~~~es~assv~~~~t~~~~~~l~~gt~~~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kks~s 497 (1099)
T KOG1170|consen 418 AGEDLPQLFEILHSESSASSVLTALSARTYDELEIGTVHPPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKKSVS 497 (1099)
T ss_pred cccchhHHHHHhhhhhhhhhccCCCchhhhhhhhhccccCCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhccHH
Confidence 000
Q ss_pred ---------cCCC-----------------CCCCCC-------------------cc-------cccc------------
Q 011840 240 ---------VDPP-----------------HSLKPT-------------------ED-------CALD------------ 255 (476)
Q Consensus 240 ---------~~~p-----------------~~~~~~-------------------~~-------~~~~------------ 255 (476)
+|-| .++++. .+ ..++
T Consensus 498 ~~i~~te~a~De~~~~~~~~L~eseekm~~ks~~~~~~se~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~~~~~ 577 (1099)
T KOG1170|consen 498 TIIDITEGAPDEPRIYSDTTLNESEEKMKSKSLHPICSSEDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSPARAS 577 (1099)
T ss_pred HhHHHhhcCCCcccccchhhhhhhHhhhhhccCCCcccCccccccccchhhccccchhhccCCCCCcccCccccCccccc
Confidence 0000 000000 00 0000
Q ss_pred c------ccc--cCC-------cc-cc---cc--cceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccc
Q 011840 256 Q------IEG--ALP-------EK-VN---CY--EGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 314 (476)
Q Consensus 256 ~------~ng--~~~-------~~-~~---~~--~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~ 314 (476)
+ ++. -.| +. .. .| .=+|+||||||+||.|...||..|+++|+++++|.+|.+||...|.
T Consensus 578 d~dtl~al~~~~~~p~~d~g~seS~L~sa~~y~EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGt 657 (1099)
T KOG1170|consen 578 DSDTLSALKERKRTPGSDLGLSESHLRSAGQYKEKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGT 657 (1099)
T ss_pred ccchhhhhhccccCCcccccccccccccccchhhhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcch
Confidence 0 000 000 11 00 01 1278999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCC
Q 011840 315 TQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHAD 394 (476)
Q Consensus 315 ~~~~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~d 394 (476)
++++ +.+| ++| +.++. ++| ||+.+++| ++..|+|+|+|+|.||.|+||..+. +--|..+..|
T Consensus 658 KeLL-hrTy------rnL----EQRV~-LEC-DG~~i~lP-~LQGIviLNIpSyaGGtNFWGsnk~----dd~f~apSfD 719 (1099)
T KOG1170|consen 658 KELL-HRTY------RNL----EQRVK-LEC-DGVPIDLP-SLQGIVILNIPSYAGGTNFWGSNKD----DDEFTAPSFD 719 (1099)
T ss_pred HHHH-HHHH------HhH----HHHee-eec-CCcccCCc-ccceeEEEecccccCcccccCCCCC----CCcccCCCcc
Confidence 9974 3333 233 33444 678 47999887 7999999999999999999997542 3457789999
Q ss_pred CCeEEEEEEccchHHHH-HHHhhccceeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccccc
Q 011840 395 DGLLEIFGLKQGWHASF-VMVELISAKHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSL 471 (476)
Q Consensus 395 DGlLeVv~l~~~~~~~~-~~~~l~~g~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~ 471 (476)
|+.||||.+=+..+|.. -+..| ..-+++||++|+|.+-|+ +.+|+|+|||+|.|||+ .+.|-+...+.+
T Consensus 720 DriLEVVAvFGsvqMA~SRvI~L-qhHRIAQCr~V~I~IlGD--E~IPVQvDGEaWlQPPG-----~irIvHKNRaQm 789 (1099)
T KOG1170|consen 720 DRILEVVAVFGSVQMATSRVIRL-QHHRIAQCRHVRIVILGD--EGIPVQVDGEAWLQPPG-----IIRIVHKNRAQM 789 (1099)
T ss_pred cceeEEeeeehhHHHHHHHHHHh-hhhhhhhceEEEEEEecC--CCCceeecCccccCCCc-----eeeeehhhhHHH
Confidence 99999998876555442 12233 345789999999999875 78999999999999984 577766555443
No 13
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=3.2e-40 Score=331.06 Aligned_cols=282 Identities=20% Similarity=0.238 Sum_probs=208.9
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++++|+||.||++++.+.++++.+.|..+. +++.. +.|+..+++.++++++. ..+.+.||++|||||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~-~~~~~-----~~t~~~~~~~~~~~~~~-----~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEG-MEIHV-----RVTWEKGDAARYVEEAR-----KFGVDTVIAGGGDGT 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCC-CEEEE-----EEecCcccHHHHHHHHH-----hcCCCEEEEECCCCh
Confidence 47899999999999888888999998887654 44433 22344556666654322 235789999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~ 239 (476)
+++|+|+|... ...+|||+||+||+|||||+||+ |.++.++++ .+.+++.+++|++.+
T Consensus 70 l~~v~~~l~~~-----~~~~~lgiiP~Gt~N~~a~~l~i----~~~~~~~~~----~l~~~~~~~~Dlg~v--------- 127 (293)
T TIGR00147 70 INEVVNALIQL-----DDIPALGILPLGTANDFARSLGI----PEDLDKAAK----LVIAGDARAIDMGQV--------- 127 (293)
T ss_pred HHHHHHHHhcC-----CCCCcEEEEcCcCHHHHHHHcCC----CCCHHHHHH----HHHcCCceEEEEEEE---------
Confidence 99999999763 13579999999999999999998 556655554 456899999999873
Q ss_pred cCCCCCCCCCcccccccccccCCcccccccce-EEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccc
Q 011840 240 VDPPHSLKPTEDCALDQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 318 (476)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~-F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~ 318 (476)
| +++ |+|++|+|+||++++.++... | .++ ++++|...+++.++
T Consensus 128 ------------------~----------~~~~fln~~g~G~~a~v~~~~~~~~--k-----~~~-g~~~Y~~~~l~~l~ 171 (293)
T TIGR00147 128 ------------------N----------KQYCFINMAGGGFGTEITTETPEKL--K-----AAL-GSLSYILSGLMRMD 171 (293)
T ss_pred ------------------C----------CeEEEEEEEeechhhHhHhhCCHHH--H-----hcc-chHHHHHHHHHHHh
Confidence 3 378 999999999999998876432 1 233 78899988776542
Q ss_pred cccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeE
Q 011840 319 FLTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLL 398 (476)
Q Consensus 319 ~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlL 398 (476)
.. +..++++. ++ ++.++ .+...++++|+++||||+.+ + |.++++||+|
T Consensus 172 ~~-------------~~~~~~i~-~d---~~~~~--~~~~~~~v~n~~~~gg~~~~----~---------p~a~~~DG~l 219 (293)
T TIGR00147 172 TL-------------QPFRCEIR-GE---GEHWQ--GEAVVFLVGNGRQAGGGQKL----A---------PDASINDGLL 219 (293)
T ss_pred hC-------------CCeeEEEE-EC---CeEEE--eeEEEEEEeCCcccCCCccc----C---------CccccCCCee
Confidence 11 12344443 32 35443 35677888999999999876 3 5889999999
Q ss_pred EEEEEccchHHH--HHHHhhccc-------eeEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccc
Q 011840 399 EIFGLKQGWHAS--FVMVELISA-------KHIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQ 469 (476)
Q Consensus 399 eVv~l~~~~~~~--~~~~~l~~g-------~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~ 469 (476)
||++++..+.+. .++..+..| .++.++++++|+++ +++++|+|||++... .++|+++|.+
T Consensus 220 ~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~----~~~~~~iDGE~~~~~-------p~~i~v~p~a 288 (293)
T TIGR00147 220 DLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTP----HKITFNLDGEPLGGT-------PFHIEILPAH 288 (293)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcC----CCcEEEeCCCcCCCC-------cEEEEEEhhc
Confidence 999998754433 334444444 35568999999986 578999999999753 3999999998
Q ss_pred cccc
Q 011840 470 SLMI 473 (476)
Q Consensus 470 ~~~~ 473 (476)
..++
T Consensus 289 l~~~ 292 (293)
T TIGR00147 289 LRCR 292 (293)
T ss_pred cEEe
Confidence 7764
No 14
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=332.02 Aligned_cols=285 Identities=23% Similarity=0.335 Sum_probs=220.1
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++.+|+||.||++++.+.++++++.|..+ .++++.. .|+..+|+.++|+++. ..+.|.||++|||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~-----~t~~~g~a~~~a~~a~-----~~~~D~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVR-----VTEEAGDAIEIAREAA-----VEGYDTVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEE-----EeecCccHHHHHHHHH-----hcCCCEEEEecCcch
Confidence 5789999999999999999999999999875 4666553 3444589999999875 357999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~ 239 (476)
||||+|+|.+.+ .++|||||+||+|||||+||| |.+ .+..+++.+.+|+++.+|+++
T Consensus 71 v~evingl~~~~------~~~LgilP~GT~NdfAr~Lgi----p~~---~~~~Al~~i~~g~~~~vDlg~---------- 127 (301)
T COG1597 71 VNEVANGLAGTD------DPPLGILPGGTANDFARALGI----PLD---DIEAALELIKSGETRKVDLGQ---------- 127 (301)
T ss_pred HHHHHHHHhcCC------CCceEEecCCchHHHHHHcCC----Cch---hHHHHHHHHHcCCeEEEeehh----------
Confidence 999999999742 233999999999999999999 663 134445567789999999975
Q ss_pred cCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeeccccccccc
Q 011840 240 VDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWF 319 (476)
Q Consensus 240 ~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~ 319 (476)
+|+ .+||+|.+|+|++|+++++.+..|++ .+ +.++|+..++..+..
T Consensus 128 -----------------~~~---------~~~fin~a~~G~~a~~~~~~~~~~k~-------~~-g~~~y~~~~~~~l~~ 173 (301)
T COG1597 128 -----------------VNG---------RRYFINNAGIGFDAEVVAAVEEERKK-------GF-GRLAYALAGLAVLAR 173 (301)
T ss_pred -----------------cCC---------cceEEEEeecchhHHHHHhhcHHHHh-------cc-chHHHHHHHHHhccc
Confidence 343 23999999999999999999987642 22 678899887765422
Q ss_pred ccccCCCCcccccccceeeEEEeeecCCceEEeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEE
Q 011840 320 LTPCISDPNLRGLKNILRMHVKKVNCSEWEQVAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLE 399 (476)
Q Consensus 320 ~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLe 399 (476)
.. ...++++ ++. +..+ .....+++.|++++||+..+ + |++.++||+|+
T Consensus 174 ~~-------------~~~~~i~-~d~---~~~~--~~~~~~~~~~~~~~gg~~~~----~---------p~a~~~dG~l~ 221 (301)
T COG1597 174 LK-------------PFRIEIE-YDG---KTFE--GEALALLVFNGNSYGGGMKL----A---------PDASLDDGLLD 221 (301)
T ss_pred cC-------------CCcEEEE-EcC---cEEE--EEEEEEEEecCccccccccc----C---------CcCCCCCceEE
Confidence 22 2344443 332 3222 34778888899999998875 4 58999999999
Q ss_pred EEEEccch--HHHHHHHhhccce-------eEeeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccc
Q 011840 400 IFGLKQGW--HASFVMVELISAK-------HIAQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQS 470 (476)
Q Consensus 400 Vv~l~~~~--~~~~~~~~l~~g~-------~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~ 470 (476)
+++++... .+..++..+.+|+ .+.+++.++|+++ .++++++|||+.... .++|+.+|.+.
T Consensus 222 ~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~----~~~~~~~DGE~~~~~-------p~~i~~~p~al 290 (301)
T COG1597 222 VYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSD----PPIPVNLDGEYLGKT-------PVTIEVLPGAL 290 (301)
T ss_pred EEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcC----CCceEeeCCccCCCC-------cEEEEEecccE
Confidence 99999843 3334566666664 3467888999887 689999999998754 39999999999
Q ss_pred ccccC
Q 011840 471 LMISG 475 (476)
Q Consensus 471 ~~~~~ 475 (476)
.++..
T Consensus 291 ~vl~p 295 (301)
T COG1597 291 RVLVP 295 (301)
T ss_pred EEEcC
Confidence 88754
No 15
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=4.2e-39 Score=342.23 Aligned_cols=300 Identities=17% Similarity=0.167 Sum_probs=211.2
Q ss_pred CCCceEEEEEcCCCCCCChhHHHH-HHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~-~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG 156 (476)
..+++++||+||.||++++.+.+. .++.+|.... +++.+ +.|++.+|+++++++++ ..+++.|||+||
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g-i~~~v-----~~T~~~ghA~~la~~~~-----~~~~D~VV~vGG 177 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD-IQLTI-----QETKYQLHAKEVVRTMD-----LSKYDGIVCVSG 177 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC-CeEEE-----EeccCccHHHHHHHHhh-----hcCCCEEEEEcC
Confidence 457899999999999999888765 6888887653 55554 34778899999998764 356899999999
Q ss_pred ChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCccccccc----CCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEE
Q 011840 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF----GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarsl----g~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~ 232 (476)
|||+|||+|+|.....+....++||||||+||||||||+| |+ |.++.+|+. .|..|..+++|++.+..
T Consensus 178 DGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gi----p~~~~~A~~----~I~~g~~~~vDlg~v~~ 249 (481)
T PLN02958 178 DGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGE----PCSATNAVL----AIIRGHKCSLDVATILQ 249 (481)
T ss_pred CCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCC----CcCHHHHHH----HHHcCCceEEeEEEEEc
Confidence 9999999999986432222346899999999999999999 77 666666654 35689999999998631
Q ss_pred ecCCCcccCCCCCCCCCcccccccccccCCcccccccce-EEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeec
Q 011840 233 QMPSGEVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSG 311 (476)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~-F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~ 311 (476)
++ .++ |+|.+|+||||+|....++. |+.|.+.|..
T Consensus 250 -------------------------~~---------~~~f~vn~~g~GfdAdV~~~se~k----------r~lG~lrY~~ 285 (481)
T PLN02958 250 -------------------------GE---------TKFFSVLMLAWGLVADIDIESEKY----------RWMGSARLDF 285 (481)
T ss_pred -------------------------CC---------ceEEEEEeeeeehhhhhhcccccc----------cccchHHHHH
Confidence 10 233 47999999999997653322 1237788998
Q ss_pred ccccccccccccCCCCcccccccceeeEEEe-------------------------------------eecCCceEEeec
Q 011840 312 YSCTQGWFLTPCISDPNLRGLKNILRMHVKK-------------------------------------VNCSEWEQVAVP 354 (476)
Q Consensus 312 ~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~-------------------------------------v~~~~~e~i~~~ 354 (476)
++++.++..... ..++.+.. ++..+|+.+ +
T Consensus 286 ~~l~~l~~~r~y-----------~~~I~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~ 352 (481)
T PLN02958 286 YGLQRILCLRQY-----------NGRISFVPAPGFEAYGEPTSYNGESTSKEESGKDKQHGYQGPDVKLENLDWRTI--K 352 (481)
T ss_pred HHHHHHHhcCCc-----------ceEEEEEeccccccccccccccccccccccccccccccccCCccccCCccceEe--e
Confidence 887765322110 01111100 000112222 1
Q ss_pred CCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEEccchHHH--HHHHhhcccee-------EeeE
Q 011840 355 KSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHAS--FVMVELISAKH-------IAQA 425 (476)
Q Consensus 355 ~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~--~~~~~l~~g~~-------l~q~ 425 (476)
....++.++|.++||||+.+ + |.|+++||+|||+++++...+. .++..+..|+| +.++
T Consensus 353 ~~fl~v~v~N~~~~Ggg~~i----a---------P~A~l~DG~LDlviv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~ 419 (481)
T PLN02958 353 GPFVSVWLHNVPWGGEDTLA----A---------PDAKFSDGYLDLILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKV 419 (481)
T ss_pred cceeEEeeccCcccCCCccc----C---------CcccCCCCeEEEEEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEE
Confidence 22344559999999999875 4 5899999999999999865544 34455555544 5689
Q ss_pred eEEEEEecCC---ccccccEEecCCccCCCCCCCCceEEEEEEeccccccc
Q 011840 426 AAIRLEFRGG---EWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMI 473 (476)
Q Consensus 426 ~~i~I~~~~~---~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~ 473 (476)
++++|++... ..++.++++|||.... +.++|+++|.+..++
T Consensus 420 k~~~I~~~~~~~~~~~~~~i~iDGE~~~~-------~p~~i~v~~~al~~~ 463 (481)
T PLN02958 420 KAFVLEPGPRTDDPTKGGIIDSDGEVLAR-------GNGSYKCDQKALMSY 463 (481)
T ss_pred EEEEEEECCcccCcCcCCeEEECCcccCC-------CCceeeecccccccc
Confidence 9999987410 0135789999999864 348888888887664
No 16
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=4.5e-33 Score=296.08 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=210.9
Q ss_pred CCCCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEc
Q 011840 76 VQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (476)
Q Consensus 76 ~~~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~G 155 (476)
....+++++|||||.||++++.+.|+++..+|.... +++.+ +.|++.+|+.++++++.+. ....+|.|||+|
T Consensus 155 ~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~-i~~~v-----~~T~~aghA~d~~~~~~~~--~l~~~D~VVaVG 226 (601)
T PLN02204 155 EVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAK-VKTKV-----IVTERAGHAFDVMASISNK--ELKSYDGVIAVG 226 (601)
T ss_pred ccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcC-CeEEE-----EEecCcchHHHHHHHHhhh--hccCCCEEEEEc
Confidence 345678999999999999999999999999997654 44444 4577889999998765321 135689999999
Q ss_pred CChhHHHHHHHHHhhhcc--------------------------------------------------------------
Q 011840 156 GDGTVGWVLGSVGELNKQ-------------------------------------------------------------- 173 (476)
Q Consensus 156 GDGTv~~vln~l~~~~~~-------------------------------------------------------------- 173 (476)
||||+|||+|+|......
T Consensus 227 GDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (601)
T PLN02204 227 GDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQ 306 (601)
T ss_pred CccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999732100
Q ss_pred -----CCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEecCCCcccCCCCCCCC
Q 011840 174 -----GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKP 248 (476)
Q Consensus 174 -----~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~~~~~~~~~p~~~~~ 248 (476)
.....++|||||+|||||||+++.. +.++..++. .|..|+.+.+|+++|.-.... +
T Consensus 307 ~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g----~~dp~taa~----~Ii~G~~~~lDig~V~~~~~~------~----- 367 (601)
T PLN02204 307 DSDFPFPNERFRFGIIPAGSTDAIVMCTTG----ERDPVTSAL----HIILGRRVCLDIAQVVRWKTT------S----- 367 (601)
T ss_pred cccccccCCCceEEEECCccHHHHHHHccC----CCCHHHHHH----HHHhCCCeEeeEEEEeccccc------c-----
Confidence 0024578999999999999998865 566665554 366899999999997521000 0
Q ss_pred CcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccccccccCCCCc
Q 011840 249 TEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPN 328 (476)
Q Consensus 249 ~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~~~~~~p~ 328 (476)
.|. ...+.+||+|.+|+||+|+|+.+.++.| +.|.+.|...+++.++...
T Consensus 368 --------~~~-----~~~~~ryf~s~ag~Gf~gdVi~esek~R----------~mG~~rY~~~g~k~~~~~r------- 417 (601)
T PLN02204 368 --------TSE-----IEPYVRYAASFAGYGFYGDVISESEKYR----------WMGPKRYDYAGTKVFLKHR------- 417 (601)
T ss_pred --------ccc-----ccccceEEEEEeecchHHHHHHHhhhhc----------ccchHHHHHHHHHHHHhCC-------
Confidence 000 0112489999999999999998865443 2277899998887653221
Q ss_pred ccccccceeeEEEeeecCCceEEee------------cCC---c---eEEEEEccc---------------------ccC
Q 011840 329 LRGLKNILRMHVKKVNCSEWEQVAV------------PKS---V---RAIVALNLH---------------------NYA 369 (476)
Q Consensus 329 ~~~l~~~~~~~i~~v~~~~~e~i~~------------~~~---~---~~i~v~N~~---------------------~~g 369 (476)
.+++++. ++ + +..+. +.+ + ..+.|+|.+ .+|
T Consensus 418 ------~y~~~V~-~d--~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~~~~~~~p~~~~~~~~W~~~~G 487 (601)
T PLN02204 418 ------SYEAEVA-YL--E-TESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVSTNSPSTTPNSCPEETRWLRSKG 487 (601)
T ss_pred ------CceEEEE-EC--C-eEeeecccccccccccccccccchhhhhheeeecccccccccccccccccccccceeecC
Confidence 2233333 22 1 11110 000 0 135677755 122
Q ss_pred CCCCcCCCC-------CchhhhccCCccccCCCCeEEEEEEccchHHHH--HHHhhc-c-c-------eeEeeEeEEEEE
Q 011840 370 SGRNPWGNL-------SPEYLEKKGFVEAHADDGLLEIFGLKQGWHASF--VMVELI-S-A-------KHIAQAAAIRLE 431 (476)
Q Consensus 370 gG~~~wg~~-------~p~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~--~~~~l~-~-g-------~~l~q~~~i~I~ 431 (476)
+.+..++.. +|+ .-.|.|+++||.|||+++++..+..+ ++..+. + | .++.++++++|+
T Consensus 488 ~f~~vG~~iis~~~~rap~----gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~ 563 (601)
T PLN02204 488 RFLSVGAAIISNRNERAPD----GLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFT 563 (601)
T ss_pred ceEEeeeeccccccccccc----ccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEE
Confidence 222111100 111 11258999999999999998665443 233333 2 2 345789999998
Q ss_pred ecCCccccccEEecCCccCCCCCCCCceEEEEEEecccccccc
Q 011840 432 FRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMIS 474 (476)
Q Consensus 432 ~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~~ 474 (476)
+.. ++.++++|||.+.. +.++|+..|....++.
T Consensus 564 s~~---~~~~~niDGE~~~~-------~~v~v~V~~~al~lfa 596 (601)
T PLN02204 564 SFG---DESVWNLDGEIFQA-------HQLSAQVFRGLVNLFA 596 (601)
T ss_pred ECC---CCceEEeCCCcCCC-------ccEEEEEEcCeeEEEe
Confidence 752 45679999999864 3599999998877664
No 17
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.98 E-value=6.1e-33 Score=255.04 Aligned_cols=160 Identities=36% Similarity=0.632 Sum_probs=137.5
Q ss_pred eEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccccccccCCCCcccccccceeeEEEeeecCCceE
Q 011840 271 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 350 (476)
Q Consensus 271 ~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~ 350 (476)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+..+++++| ..+|. .+.+.+++ .+ ||+.
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~~------~~~~~i~l-----~~-dg~~ 67 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSCK------NLPKKIEL-----EV-DGKE 67 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchhc------Cchhhccc-----cc-CCee
Confidence 489999999999999999999999999999999999999999999986 55553 23222232 23 4688
Q ss_pred EeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEEccchHHHHHHHhhccceeEeeEeEEEE
Q 011840 351 VAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRL 430 (476)
Q Consensus 351 i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~q~~~i~I 430 (476)
++++.++.+|+++|+++|+||.++|+..++.... +.|..++++||+|||+++.+.+|+..++.++.+++|++|++.|+|
T Consensus 68 ~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~-~~~~~~~~~Dg~lEVvg~~~~~hl~~~~~g~~~~~rl~Q~~~i~i 146 (161)
T PF00609_consen 68 VDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSK-LKFKKQSMDDGKLEVVGFRGSFHLGQIQAGLSSAKRLAQGRPIRI 146 (161)
T ss_pred EeeecceeEEEEEccccccCCcccccCCcccccc-cccccccccCceEEEEEEcCchhhhhhhhccCCceEeecCCEEEE
Confidence 8888889999999999999999999975543221 457789999999999999999999999999999999999999999
Q ss_pred EecCCccc-cccEEecCCc
Q 011840 431 EFRGGEWK-DAFMQMDGEP 448 (476)
Q Consensus 431 ~~~~~~~~-~~~~qiDGE~ 448 (476)
+++ + ++||||||||
T Consensus 147 ~~~----~~~~~~QvDGEp 161 (161)
T PF00609_consen 147 ETK----ENKVPFQVDGEP 161 (161)
T ss_pred EEC----CCceeEEeCCCC
Confidence 998 5 8999999997
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=8.2e-27 Score=243.97 Aligned_cols=325 Identities=20% Similarity=0.232 Sum_probs=213.0
Q ss_pred CCCCCceEEEEEcCCCCCCChhHHHHH-HHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEE
Q 011840 76 VQPPEAPMVVFINSRSGGRHGPELKER-LQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (476)
Q Consensus 76 ~~~~~~~~lvivNP~SG~~~~~~~~~~-l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~ 154 (476)
.....++++|||||.+|.|++.+++++ ++.+|.... ..+++ .+|++++||.++++..+ ..++|.|+++
T Consensus 175 ~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~-i~~ev-----v~T~~~~HArei~rt~d-----l~kyDgIv~v 243 (579)
T KOG1116|consen 175 SLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAG-ISFEV-----VLTTRPNHAREIVRTLD-----LGKYDGIVCV 243 (579)
T ss_pred ccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcC-ceEEE-----EEecCccHHHHHHHhhh-----ccccceEEEe
Confidence 345678999999999999999888765 455666543 33333 45889999999999875 6789999999
Q ss_pred cCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEEec
Q 011840 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQM 234 (476)
Q Consensus 155 GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~~~ 234 (476)
||||+++||+|||..+..+......|||+||+||||+||.+++|..++ + -++...+ .+.+|....+|+..+++
T Consensus 244 sGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~--~--~~~~a~l-~iirg~~t~~dv~~v~~-- 316 (579)
T KOG1116|consen 244 SGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP--D--LPLLATL-LIIRGRLTPMDVSVVEY-- 316 (579)
T ss_pred cCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc--c--cchHHHH-HHHccCCCchheeehhh--
Confidence 999999999999998765544568999999999999999999997652 2 0122222 36689999999987654
Q ss_pred CCCcccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCcccc----------ccCC
Q 011840 235 PSGEVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQ----------GPIS 304 (476)
Q Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~----------~rl~ 304 (476)
.++ ...++++....||-|+|-...++.|+..+.+|. ...+
T Consensus 317 ----------------------~~~--------~~~fSfLs~~wGlIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~ 366 (579)
T KOG1116|consen 317 ----------------------AGK--------DRHFSFLSAAWGLIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYK 366 (579)
T ss_pred ----------------------ccC--------cceEEEEeeeeeeEEecccchHHHHhhcchhhhHHHHHHHHhccCCC
Confidence 222 136889999999999999999988865443331 0113
Q ss_pred Cceeeecccccccccc-----------cccCC-------CCccccc----------ccce-e---------eE-----EE
Q 011840 305 NKLIYSGYSCTQGWFL-----------TPCIS-------DPNLRGL----------KNIL-R---------MH-----VK 341 (476)
Q Consensus 305 nkl~Y~~~~~~~~~~~-----------~~~~~-------~p~~~~l----------~~~~-~---------~~-----i~ 341 (476)
+.+.|..+.-+.. .- ..|.. ++..+.. +... . .. -.
T Consensus 367 gri~ylp~~~k~~-~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~ 445 (579)
T KOG1116|consen 367 GRIEYLPAKGKSA-EPLPAHELEAADSEGCLSTHADTEPSEYPRLSVPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEE 445 (579)
T ss_pred ceEEEeccccccc-CcccchhhccccccccccccccccccccccccccccCccccccCcccccCcccCCccccCCCcccC
Confidence 4455555322210 00 00000 0000000 0000 0 00 00
Q ss_pred eeecCCceEEeecCCceEEE-EEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEEccc-hHH--HHHHHhhc
Q 011840 342 KVNCSEWEQVAVPKSVRAIV-ALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQG-WHA--SFVMVELI 417 (476)
Q Consensus 342 ~v~~~~~e~i~~~~~~~~i~-v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l~~~-~~~--~~~~~~l~ 417 (476)
.+. .+|+...-. +...+. +.+ .|.+..+.. +|.|.++||+++++++... .+. ..++..+.
T Consensus 446 p~p-sdw~~~~~~-d~~~~~a~~~-sy~~~d~~~-------------~P~A~~~dg~I~lv~~~~~~~r~~ll~~llald 509 (579)
T KOG1116|consen 446 PLP-SDWEVVPGV-DFVCILAILL-SYLGADMKF-------------APAARPDDGLIHLVIVRAGGSRTQLLRLLLALD 509 (579)
T ss_pred CCC-cceeeecCc-ceeeeehhhh-hhccCCccc-------------ccccccCCCeEEEEEEccCCcHHHHHHHHHhhc
Confidence 011 235544211 222221 222 255555543 4799999999999999874 332 23566777
Q ss_pred cceeE---------eeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEeccccccccC
Q 011840 418 SAKHI---------AQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMISG 475 (476)
Q Consensus 418 ~g~~l---------~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~~~ 475 (476)
+|.|+ ..+++++++... ...++++|||.+...| +++++.|+.-+++.|
T Consensus 510 ~gsh~~~~~p~v~~~~vra~r~epv~---~~~~~~vDGE~~~~ep-------~q~~v~p~~i~~~s~ 566 (579)
T KOG1116|consen 510 KGSHLHVECPFVKYVKVRAFRLEPVT---PSGYFAVDGELVPLEP-------LQVQVLPGLILTLSG 566 (579)
T ss_pred ccccccccCCceeEEEeEEEEEEEec---CCceEEecccEeeccc-------eeEEecccceeEEec
Confidence 88774 357788888763 3589999999997543 888888888877766
No 19
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.87 E-value=4.8e-22 Score=176.09 Aligned_cols=125 Identities=29% Similarity=0.399 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCc-ceEEEEcCChhH
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTV 160 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~-~~Ivv~GGDGTv 160 (476)
+++||+||+||++++. ++++.+.|.... +++.. +.|+..++++.+++... .... +.||++|||||+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~-~~~~~-----~~t~~~~~~~~~~~~~~-----~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG-IDYEV-----IETESAGHAEALARILA-----LDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT-CEEEE-----EEESSTTHHHHHHHHHH-----HTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC-CceEE-----EEEeccchHHHHHHHHh-----hccCccEEEEEcCccHH
Confidence 5899999999999887 577888776643 44433 23445677777775221 3444 899999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHH-HHHHHHHHHHcCCceeeeeeEE
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKS-AVKRTLQRASAGPICRLDSWHA 230 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~-al~~~l~~i~~g~~~~iD~~~v 230 (476)
++++|++.+... ...+|||+||+||+|||||+||++ .++.. +.. .+..+...++|++++
T Consensus 68 ~~vv~~l~~~~~---~~~~~l~iiP~GT~N~~ar~lg~~----~~~~~~a~~----~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 68 NEVVNGLMGSDR---EDKPPLGIIPAGTGNDFARSLGIP----SDPEANAAL----LIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHCTSTS---SS--EEEEEE-SSS-HHHHHTT------SSHHH-HHH----HHHHSEEEEEEEEEE
T ss_pred HHHHHHHhhcCC---CccceEEEecCCChhHHHHHcCCC----CCcHHHHHH----HHHhCCCcEeEEEEe
Confidence 999999987532 126799999999999999999994 44433 222 234566778998874
No 20
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.86 E-value=1.5e-21 Score=179.18 Aligned_cols=160 Identities=34% Similarity=0.588 Sum_probs=117.2
Q ss_pred eEEEEEeeeehHHHhhhhhhccccCCccccccCCCceeeecccccccccccccCCCCcccccccceeeEEEeeecCCceE
Q 011840 271 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 350 (476)
Q Consensus 271 ~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl~nkl~Y~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~v~~~~~e~ 350 (476)
+|+|++||||||+|++.+++.|+++|.+++.++.|+++|...+++.+|... + +.. ..++++. ++ ++.
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~-~------~~~--~~~~~i~-~d---g~~ 67 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRT-C------KDL--HERIELE-CD---GVD 67 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhcc-c------cch--hhceEEE-EC---CEe
Confidence 489999999999999999988877676665666799999999988764211 0 000 1133333 32 354
Q ss_pred EeecCCceEEEEEcccccCCCCCcCCCCCchhhhccCCccccCCCCeEEEEEEccchHHHHHHHhhccceeEeeEeEEEE
Q 011840 351 VAVPKSVRAIVALNLHNYASGRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRL 430 (476)
Q Consensus 351 i~~~~~~~~i~v~N~~~~ggG~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~~~~l~~g~~l~q~~~i~I 430 (476)
.+.+.++.+++++|+++||||+.+|...++.| +++|+|+++||+|||+++++.+++..++..-..+.++.|+++++|
T Consensus 68 ~~~~~~~~~v~v~N~~~~ggG~~i~p~~~~~~---~~~p~a~~~DG~ldv~~~~~~~~~~~~~~~~~~~v~~~~~~~v~i 144 (160)
T smart00045 68 VDLPNSLEGIAVLNIPSYGGGTNLWGTTDKED---LNFSKQSHDDGLLEVVGLTGAMHMAQIRQVGLAGRRIAQCSEVRI 144 (160)
T ss_pred ccCCCCccEEEEECCCccccCcccccCCcccc---cccCCCCCCCceEEEEEEcCchhhhhhhhccCCCceeecCceEEE
Confidence 44333588999999999999999986544434 468899999999999999998777655422235678889999995
Q ss_pred EecCCccccccEEecCCc
Q 011840 431 EFRGGEWKDAFMQMDGEP 448 (476)
Q Consensus 431 ~~~~~~~~~~~~qiDGE~ 448 (476)
+++. .+++++|+|||+
T Consensus 145 ~i~~--~~~~~~q~DGE~ 160 (160)
T smart00045 145 TIKT--SKTIPMQVDGEP 160 (160)
T ss_pred EEec--CCceeeecCCCC
Confidence 5432 278999999996
No 21
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.84 E-value=1.1e-20 Score=166.34 Aligned_cols=101 Identities=47% Similarity=0.847 Sum_probs=75.1
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHHHH
Q 011840 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (476)
Q Consensus 84 lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~v 163 (476)
+||+||+||++++.+.+.+++..+...+++... +....++..++++ ...++.|+++|||||+++|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~--------~~~~~~~~~~~~~-------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLT--------KKGPAAALVIFRD-------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEe--------cCChHHHHHHHhh-------cCcCCEEEEEccccHHHHH
Confidence 589999999999988999998888765433222 1123344444433 2346799999999999999
Q ss_pred HHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCC
Q 011840 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGS 201 (476)
Q Consensus 164 ln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~ 201 (476)
+|+|.+.... ...+|||+||+||||||||+|||+.+
T Consensus 66 vn~l~~~~~~--~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELP--LPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccc--cCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999864310 12289999999999999999999654
No 22
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-17 Score=166.01 Aligned_cols=308 Identities=16% Similarity=0.104 Sum_probs=200.2
Q ss_pred CCCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC
Q 011840 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (476)
Q Consensus 77 ~~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG 156 (476)
...++.++|||||.+|+|+|.++++.+..++ -+..+.+.-++|+..+||.+...+..+ ++...+|-||++||
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F------~la~v~tkvivTErAnhA~d~~~ei~~--~~~~~yDGiv~VGG 226 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIF------ILAKVNTKVIVTERANHAFDVMAEIQN--KELHTYDGIVAVGG 226 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhE------EeeecceeEEEEccccchhhhhhhCCH--hhhhhcccEEEecC
Confidence 3457899999999999999999999966653 333344444779999999987655432 33567899999999
Q ss_pred ChhHHHHHHHHHhhhcc-------C-----CCCCCcEEEecCCCCcccccccCCCCCCCCcHH-HHHHHHHHHHHcCCce
Q 011840 157 DGTVGWVLGSVGELNKQ-------G-----REPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWK-SAVKRTLQRASAGPIC 223 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~-------~-----~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~-~al~~~l~~i~~g~~~ 223 (476)
||-.||+|+|+...... + ....+-+||||+|++|...-+-. |. .|+. +|+ .|.-|+..
T Consensus 227 DG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~-gt---~D~~TSAl-----HI~lG~~l 297 (516)
T KOG1115|consen 227 DGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT-GT---RDPVTSAL-----HIILGRKL 297 (516)
T ss_pred chhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec-cC---Ccccccee-----eeEeccce
Confidence 99999999998643210 1 12456799999999999988774 22 2321 333 35569999
Q ss_pred eeeeeEEEEecCCCcccCCCCCCCCCcccccccccccCCcccccccceEEEEEeeeehHHHhhhhhhccccCCccccccC
Q 011840 224 RLDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPI 303 (476)
Q Consensus 224 ~iD~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~ng~~~~~~~~~~~~F~n~~sIG~DA~V~~~~~~~R~~kp~~~~~rl 303 (476)
.+|+-.+.. ++ ..-||-.|.+|.||.++|....+++|...|
T Consensus 298 ~vDVctVht-------------------------~~-------kLiRysaSa~gYGFyGDvl~dSEKYRWmGp------- 338 (516)
T KOG1115|consen 298 FVDVCTVHT-------------------------IE-------KLIRYSASAAGYGFYGDVLSDSEKYRWMGP------- 338 (516)
T ss_pred eeeeeeeee-------------------------cc-------hheeeehhhhcccccchhhhhhhhhhccCc-------
Confidence 999977642 11 135888999999999999999998876432
Q ss_pred CCceeeecccccccccccccCCCCcccccccceeeE------------EEeeec-CCceEEeecCCceEEEEEcccccCC
Q 011840 304 SNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMH------------VKKVNC-SEWEQVAVPKSVRAIVALNLHNYAS 370 (476)
Q Consensus 304 ~nkl~Y~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~------------i~~v~~-~~~e~i~~~~~~~~i~v~N~~~~gg 370 (476)
..|-..+++.+... +..++.-.++..+ ...-++ +.|+. ..++...|.+.|++....
T Consensus 339 ---~RYDfsglKtflkH------~~YegeVsFlpa~sen~~qe~~~~g~~~~~~~k~Wq~--~~g~Fl~V~c~aipciC~ 407 (516)
T KOG1115|consen 339 ---KRYDFSGLKTFLKH------RSYEGEVSFLPAESENPCQEPCPSGASLHTRSKTWQR--NTGRFLKVLCRAIPCICN 407 (516)
T ss_pred ---hhhhhHHHHHHHhc------cccceEEEecccccCCchhccccccCCcccCcchhhh--hhhheeeeeEeecccccc
Confidence 35777777654221 1112111111000 000011 22443 245677788888888765
Q ss_pred CCCcCCCCCchhhhccCCccccCCCCeEEEEEEccchHHHHHHHhhc----cc------eeEeeEeEEEEEecC---Ccc
Q 011840 371 GRNPWGNLSPEYLEKKGFVEAHADDGLLEIFGLKQGWHASFVMVELI----SA------KHIAQAAAIRLEFRG---GEW 437 (476)
Q Consensus 371 G~~~wg~~~p~~~~~~~~~~a~~dDGlLeVv~l~~~~~~~~~~~~l~----~g------~~l~q~~~i~I~~~~---~~~ 437 (476)
-. |.| .+ |...++||-+++++.+..++..++-.-.. .+ .....+.++...+.- +..
T Consensus 408 ~~-PrG-La---------P~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~d~~~~ 476 (516)
T KOG1115|consen 408 SK-PRG-LA---------PSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIKDCSRP 476 (516)
T ss_pred CC-CCC-cC---------CccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecCCCCCC
Confidence 32 333 23 47899999999999998777654322111 11 122345555544321 223
Q ss_pred ccccEEecCCccCCCCCCCCceEEEEEEecc
Q 011840 438 KDAFMQMDGEPWKQPLNRDYSTFVEIKRVPF 468 (476)
Q Consensus 438 ~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~ 468 (476)
++....+|||.+.|| ..++|+.=|.
T Consensus 477 d~~eWN~DGeile~p------~~lh~rlHpq 501 (516)
T KOG1115|consen 477 DYLEWNLDGEILEQP------KPLHFRLHPQ 501 (516)
T ss_pred CcceeccCcchhcCC------cceEEEechh
Confidence 456789999999986 3588877663
No 23
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-11 Score=124.22 Aligned_cols=136 Identities=20% Similarity=0.124 Sum_probs=92.0
Q ss_pred CCCCCCceEEEEEcCCCCCCChhHHHHHHH-HhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEE
Q 011840 75 GVQPPEAPMVVFINSRSGGRHGPELKERLQ-ELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (476)
Q Consensus 75 ~~~~~~~~~lvivNP~SG~~~~~~~~~~l~-~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv 153 (476)
.|....++++|++||.+..+.....+.+.. .+|+- .++++.+++ |.+.++++.|++..+ ...|.|+|
T Consensus 55 pp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHL-aG~~V~Ivk-----td~~gqak~l~e~~~------t~~Dii~V 122 (535)
T KOG4435|consen 55 PPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHL-AGVQVDIVK-----TDNQGQAKALAEAVD------TQEDIIYV 122 (535)
T ss_pred CcccccceEEEEechhhccchhhhhhhcccchheee-ccceEEEEe-----cCcHHHHHHHHHHhc------cCCCeEEE
Confidence 455678999999999998765544444332 34443 357777755 557899999998764 23499999
Q ss_pred EcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCccc-cccc-CCCCCCCCcHHHHHHHHHHHHHcCCc---eeeeee
Q 011840 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDL-SRSF-GWGGSFPFAWKSAVKRTLQRASAGPI---CRLDSW 228 (476)
Q Consensus 154 ~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdf-arsl-g~g~~~p~~~~~al~~~l~~i~~g~~---~~iD~~ 228 (476)
+|||||+++|+.|++.++ ....|++++|.|--|-- +++| .+-. ..|..+.+-..+..+++++. ..+|+-
T Consensus 123 aGGDGT~~eVVTGi~Rrr----~~~~pv~~~P~G~~~l~~~s~l~~vfe--~~d~V~h~~~a~~avikde~ksv~~fdv~ 196 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR----KAQLPVGFYPGGYDNLWLKSMLPSVFE--NSDDVRHACEAAMAVIKDEKKSVYAFDVT 196 (535)
T ss_pred ecCCCcHHHhhHHHHhcc----cccCceeeccCccchHhhhhhchhhhc--cchHHHHHHHHHHHHhcccccceEEEEec
Confidence 999999999999999754 36789999999988763 3433 1111 12333333344445666655 566663
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.34 E-value=3.9e-06 Score=83.91 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHh-cchhhhhcccCcceEEEEcCChhH
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE-LGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~-~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++.+++|+.. ....++++++.+.|..+. +++.... . .+...+++...+. .. ...+.+.||++|||||+
T Consensus 2 ~v~iv~~~~k--~~~~~~~~~I~~~L~~~g-~~v~v~~-~--~~~~~~~~~~~~~~~~-----~~~~~d~vi~iGGDGTl 70 (277)
T PRK03708 2 RFGIVARRDK--EEALKLAYRVYDFLKVSG-YEVVVDS-E--TYEHLPEFSEEDVLPL-----EEMDVDFIIAIGGDGTI 70 (277)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEec-c--hhhhcCcccccccccc-----cccCCCEEEEEeCcHHH
Confidence 5778888754 466778899998887653 4444321 0 0111111111110 10 01357899999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCcee
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICR 224 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~ 224 (476)
.++++ +.. ..+|+..||+||. +|...+.. .+ +...++++.+|....
T Consensus 71 L~a~~-~~~-------~~~pi~gIn~G~l-GFl~~~~~-----~~----~~~~l~~i~~g~~~~ 116 (277)
T PRK03708 71 LRIEH-KTK-------KDIPILGINMGTL-GFLTEVEP-----EE----TFFALSRLLEGDYFI 116 (277)
T ss_pred HHHHH-hcC-------CCCeEEEEeCCCC-CccccCCH-----HH----HHHHHHHHHcCCceE
Confidence 99999 654 4789999999999 88887642 23 445566667776543
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.24 E-value=8.3e-06 Score=82.69 Aligned_cols=125 Identities=12% Similarity=0.042 Sum_probs=75.8
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
.++++++|+|| |.....+..+.+.+.|..+ .+++....... .......+.+. .....+.||++||||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~-g~~v~v~~~~~----~~~~~~~~~~~------~~~~~d~vi~~GGDG 68 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEAR-GCKVLMGPSGP----KDNPYPVFLAS------ASELIDLAIVLGGDG 68 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHC-CCEEEEecCch----hhccccchhhc------cccCcCEEEEECCcH
Confidence 35789999999 4445567788888878654 46654422110 00001111110 123578999999999
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecC-CCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEE
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPl-GTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~ 232 (476)
|+.++++.+.. ..+|+..|.+ |+-.=|+..-. +.. . +.+++++.+|...--....+.+
T Consensus 69 T~l~~~~~~~~-------~~~pv~gin~~G~lGFL~~~~~-------~~~-~-~~~l~~i~~g~~~i~~r~~L~~ 127 (305)
T PRK02645 69 TVLAAARHLAP-------HDIPILSVNVGGHLGFLTHPRD-------LLQ-D-ESVWDRLQEDRYAIERRMMLQA 127 (305)
T ss_pred HHHHHHHHhcc-------CCCCEEEEecCCcceEecCchh-------hcc-h-HHHHHHHHcCCceEEEeeEEEE
Confidence 99999999864 5788999998 76555553211 110 1 3455667788766555555544
No 26
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.85 E-value=0.00012 Score=73.88 Aligned_cols=58 Identities=38% Similarity=0.387 Sum_probs=44.6
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc-cccCCCCCCCCcHHHHHHHHHHHHHcC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-RSFGWGGSFPFAWKSAVKRTLQRASAG 220 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa-rslg~g~~~p~~~~~al~~~l~~i~~g 220 (476)
++-+.|+.+|||||...|++++. .+.|+--||+||-|-+. ..+. |. +..+++..+.++
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~--------~~vPvLGipaGvk~~SgvfA~~-----P~----~aa~l~~~~lkg 157 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVG--------ADVPVLGIPAGVKNYSGVFALS-----PE----DAARLLGAFLKG 157 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhcc--------CCCceEeeccccceeccccccC-----hH----HHHHHHHHHhcc
Confidence 35799999999999999999993 47899999999999775 3331 32 345666667777
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.61 E-value=0.00058 Score=68.86 Aligned_cols=124 Identities=13% Similarity=0.073 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++.+|.|+.. ....++.+++.+.|..+. +++....... ...+. ... ...+......+.|.||+.|||||
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~~~---~~~~~-~~~--~~~~~~~~~~~~d~vi~lGGDGT 75 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKG-YEVIVEQQIA---HELQL-KNV--KTGTLAEIGQQADLAIVVGGDGN 75 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchh---hhcCc-ccc--cccchhhcCCCCCEEEEECCcHH
Confidence 677999999865 355677888888786643 4443321000 00000 000 00000000124689999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCc-ccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEE
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGN-DLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgN-dfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v 230 (476)
+..++..+.. .. +.++|.++|| .|...+.. .++ ...++++.+|....-....+
T Consensus 76 ~L~aa~~~~~-------~~--~Pilgin~G~lGFl~~~~~-----~~~----~~~l~~i~~g~~~i~~r~~L 129 (292)
T PRK03378 76 MLGAARVLAR-------YD--IKVIGINRGNLGFLTDLDP-----DNA----LQQLSDVLEGHYISEKRFLL 129 (292)
T ss_pred HHHHHHHhcC-------CC--CeEEEEECCCCCcccccCH-----HHH----HHHHHHHHcCCceEEEEEEE
Confidence 9999988754 22 4578888888 77776642 333 44455566777544444443
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.50 E-value=0.0013 Score=66.55 Aligned_cols=127 Identities=14% Similarity=0.009 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++.||+||... ...+.++++.+.|.++ .+++......... ...+........ ....+.+.||++|||||
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~-giev~v~~~~~~~--~~~~~~~~~~~~----~~~~~~d~vi~~GGDGt 74 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETLRRLKDFLLDR-GLEVILDEETAEV--LPGHGLQTVSRK----LLGEVCDLVIVVGGDGS 74 (295)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHC-CCEEEEecchhhh--cCcccccccchh----hcccCCCEEEEEeCcHH
Confidence 5679999998764 5567888888878654 3554432211000 000000000000 00135789999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEE
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~ 232 (476)
+..+++.+.. ..+|+--|.+|+-+=| -.+. +. .++.+++++.+|...--.+..+++
T Consensus 75 ~l~~~~~~~~-------~~~Pvlgin~G~lGFl-~~~~-----~~----~~~~~l~~~~~g~~~i~~r~~L~~ 130 (295)
T PRK01231 75 LLGAARALAR-------HNVPVLGINRGRLGFL-TDIR-----PD----ELEFKLAEVLDGHYQEEERFLLEA 130 (295)
T ss_pred HHHHHHHhcC-------CCCCEEEEeCCccccc-ccCC-----HH----HHHHHHHHHHcCCceEEEEEEEEE
Confidence 9999988753 4567666777753322 1111 12 344556666777765544554443
No 29
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.27 E-value=0.12 Score=51.25 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=31.9
Q ss_pred eeEeEEEEEecCCccccccEEecCCccCCCCCCCCceEEEEEEecccccccc
Q 011840 423 AQAAAIRLEFRGGEWKDAFMQMDGEPWKQPLNRDYSTFVEIKRVPFQSLMIS 474 (476)
Q Consensus 423 ~q~~~i~I~~~~~~~~~~~~qiDGE~~~~p~~~~~~~~v~i~~~p~~~~~~~ 474 (476)
-+.++|+|+++ ++..+++|||.... ...|+|+..|.+..++.
T Consensus 194 p~~~~I~I~~~----~~~~l~iDGe~~~~------~~~I~I~~s~~~l~li~ 235 (256)
T PRK14075 194 PSNEKVTVESQ----RDINLIVDGVLVGK------TNRITVKKSRRYVRILR 235 (256)
T ss_pred CCCCEEEEEEC----CceEEEECCCCcCC------CcEEEEEECCCEEEEEE
Confidence 35678888875 57889999998542 23799999998877653
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.02 E-value=0.0024 Score=64.20 Aligned_cols=66 Identities=27% Similarity=0.261 Sum_probs=44.8
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceee
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (476)
.+.|.||++|||||+-.++..+.. ..+|+--|++||-|=|+. +. +.+..+++++ +.++....-
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~-------~~~Pilgin~G~lgfl~~-~~-----~~~~~~~l~~----~~~g~~~~~ 137 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD-------YDIPILGINTGTLGFLTE-FE-----PEDIEEALEK----ILAGEYSIE 137 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT-------ST-EEEEEESSSSTSSSS-EE-----GCGHHHHHHH----HHHTHCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc-------CCCcEEeecCCCcccccc-CC-----HHHHHHHHHH----HhcCCeEEE
Confidence 567999999999999999998864 478999999999655544 32 3454445544 445554433
Q ss_pred eee
Q 011840 226 DSW 228 (476)
Q Consensus 226 D~~ 228 (476)
...
T Consensus 138 ~r~ 140 (285)
T PF01513_consen 138 ERM 140 (285)
T ss_dssp EEE
T ss_pred Eee
Confidence 333
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.91 E-value=0.017 Score=58.13 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=69.9
Q ss_pred CCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
..++++.+|.||.. ...++.+++.+.|..++ +++...... +..+............+.|.||+.|||
T Consensus 8 ~~~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~Dlvi~iGGD 74 (287)
T PRK14077 8 KNIKKIGLVTRPNV---SLDKEILKLQKILSIYK-VEILLEKES---------AEILDLPGYGLDELFKISDFLISLGGD 74 (287)
T ss_pred ccCCEEEEEeCCcH---HHHHHHHHHHHHHHHCC-CEEEEecch---------hhhhcccccchhhcccCCCEEEEECCC
Confidence 44778999999963 56778888888887653 444332110 011100000000001346899999999
Q ss_pred hhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEE
Q 011840 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (476)
Q Consensus 158 GTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (476)
||+-.++..+.. ..+|+--|-+|+ ||+=..++. +.++.+++++.+|....-.+..++
T Consensus 75 GT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~~---~~~~~~l~~i~~g~y~ie~r~~L~ 131 (287)
T PRK14077 75 GTLISLCRKAAE-------YDKFVLGIHAGH-------LGFLTDITV---DEAEKFFQAFFQGEFEIEKPYMLS 131 (287)
T ss_pred HHHHHHHHHhcC-------CCCcEEEEeCCC-------cccCCcCCH---HHHHHHHHHHHcCCCeEEEEEEEE
Confidence 999999887754 355655566665 343222221 235556667778875443444433
No 32
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.80 E-value=0.021 Score=57.99 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=71.2
Q ss_pred CCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHh---cc---------hhhhhcc
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---LG---------DFCAKDT 145 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~---~~---------~~~a~~~ 145 (476)
.+++++.+|.|+.. ....++.+++.+.|..+. +++...... +..+.. .. .......
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAG-IGVRVLDAE---------AVDLGATHPAPDDFRAMEVVDADPDAA 70 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEeech---------hhhhcccccccccccccccccchhhcc
Confidence 45678999999754 355677888888776543 443332110 000000 00 0000001
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceee
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (476)
.+.|.||+.|||||+-.++..+.. ..+|+--|.+|+-.=|+..- +.+ +..+|+++.+|...--
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~-------~~~PilGIN~G~lGFL~~~~------~~~----~~~~l~~i~~g~y~i~ 133 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARA-------ADVPVLGVNLGHVGFLAEAE------AED----LDEAVERVVDRDYRVE 133 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcc-------CCCcEEEEecCCCceeccCC------HHH----HHHHHHHHHcCCceEE
Confidence 246899999999999999987754 45677778888754444311 223 4455666677776544
Q ss_pred eeeEE
Q 011840 226 DSWHA 230 (476)
Q Consensus 226 D~~~v 230 (476)
.+..+
T Consensus 134 ~R~~L 138 (306)
T PRK03372 134 ERMTL 138 (306)
T ss_pred EeeeE
Confidence 43333
No 33
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.72 E-value=0.025 Score=57.14 Aligned_cols=126 Identities=17% Similarity=0.093 Sum_probs=70.0
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++.+.+|.|+.. ....+.++.+.+.|..+ .+++...... ....+ ...+-....+ ......|.||++|||||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~-g~~v~v~~~~---~~~~~-~~~~~~~~~~--~~~~~~d~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKR-GFEVVFEADT---ARNIG-LTGYPALTPE--EIGARADLAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHC-CCEEEEecch---hhhcC-cccccccChh--HhccCCCEEEEECCcHH
Confidence 467889988865 35567788888877654 3553332110 00000 0000000000 00134689999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEE
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (476)
+..+++.+.. .++|+-=|.+|+-.=|+. + + + +.+...|+++.+|....-.++.+.
T Consensus 76 ~l~~~~~~~~-------~~~pilGIn~G~lGFL~~---~----~--~-~~~~~~l~~~~~g~~~i~~r~~L~ 130 (291)
T PRK02155 76 MLGIGRQLAP-------YGVPLIGINHGRLGFITD---I----P--L-DDMQETLPPMLAGNYEEEERMLLE 130 (291)
T ss_pred HHHHHHHhcC-------CCCCEEEEcCCCcccccc---C----C--H-HHHHHHHHHHHcCCceEEEeEEEE
Confidence 9999998864 355655577776543331 1 2 1 234556666777876544455443
No 34
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.57 E-value=0.031 Score=56.75 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=67.1
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCc-ceeecchhHH-----HHHHhcchhhhhcccCcceEEE
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPH-EFVQYGLACL-----EKLAELGDFCAKDTRQKMRIVV 153 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~-~~~t~~~~~~-----~~la~~~~~~a~~~~~~~~Ivv 153 (476)
|+++.+|.|+.. ....++.+++.+.|..+. +++...... ..+ ...... ..+.+ .. ........|.||+
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAG-WEVVRASSSGGIL-GYANPDQPVCHTGIDQ-LV-PPGFDSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchhhhc-Cccccccccccccccc-cC-hhhcccCcCEEEE
Confidence 467889999844 345678888888786643 444331110 000 000000 00000 00 0000124689999
Q ss_pred EcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEE
Q 011840 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (476)
Q Consensus 154 ~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v 230 (476)
.|||||+-.++..+.. ..+|+--|-+|+ ||+=..++ + +.+...|+++.+|...--.+-.+
T Consensus 75 iGGDGTlL~aar~~~~-------~~iPilGIN~G~-------lGFLt~~~--~-~~~~~~l~~l~~g~y~ie~r~~L 134 (305)
T PRK02649 75 LGGDGTVLSAARQLAP-------CGIPLLTINTGH-------LGFLTEAY--L-NQLDEAIDQVLAGQYTIEERTML 134 (305)
T ss_pred EeCcHHHHHHHHHhcC-------CCCcEEEEeCCC-------CcccccCC--H-HHHHHHHHHHHcCCcEEEEeeeE
Confidence 9999999999987764 355655566665 33322111 1 23456666777787544344333
No 35
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.53 E-value=0.033 Score=56.32 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=69.8
Q ss_pred CCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcc----eee-cchhHHHHHHhcchhhhhcccCcceEE
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHE----FVQ-YGLACLEKLAELGDFCAKDTRQKMRIV 152 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~----~~t-~~~~~~~~la~~~~~~a~~~~~~~~Iv 152 (476)
.+++++.+|.||.. ....+..+++.+.|..+. +++....... ... ...++. .. ... ...+..|.||
T Consensus 3 ~~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~--~~-~~~---~~~~~~D~vi 73 (296)
T PRK04539 3 SPFHNIGIVTRPNT--PDIQDTAHTLITFLKQHG-FTVYLDEVGIKEGCIYTQDTVGCH--IV-NKT---ELGQYCDLVA 73 (296)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecccccccchhcccccccc--cc-chh---hcCcCCCEEE
Confidence 34678999999865 355678888888776543 4433221000 000 000000 00 000 0012468999
Q ss_pred EEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEE
Q 011840 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (476)
Q Consensus 153 v~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v 230 (476)
+.|||||+-.++..+.. ..+|+-=|-+|+ ||+=..++. +.+...++++.+|....-.+..+
T Consensus 74 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFL~~~~~---~~~~~~l~~i~~g~~~~~~r~~l 134 (296)
T PRK04539 74 VLGGDGTFLSVAREIAP-------RAVPIIGINQGH-------LGFLTQIPR---EYMTDKLLPVLEGKYLAEERILI 134 (296)
T ss_pred EECCcHHHHHHHHHhcc-------cCCCEEEEecCC-------CeEeeccCH---HHHHHHHHHHHcCCceEEEeeeE
Confidence 99999999999987764 355655577776 444322221 23455566677776544444433
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.38 E-value=0.06 Score=54.38 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHh---------cchhhhhcccCcceEE
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---------LGDFCAKDTRQKMRIV 152 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~---------~~~~~a~~~~~~~~Iv 152 (476)
++.+|.|+.. ....++.+++.+.|..+. +++..... .+..+.. ..+.........|.||
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi 69 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERG-AEVLIEEK---------FLDFLKQDLKFHPSYDTFSDNEELDGSADMVI 69 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc---------hhhhhccccccccccccccchhhcccCCCEEE
Confidence 5778888754 345677888888776543 44433110 0010000 0000000012468999
Q ss_pred EEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEEE
Q 011840 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (476)
Q Consensus 153 v~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~~ 232 (476)
+.|||||+-.++..+.. ..+|+--|-+|+ ||+=..++ + +-++..|+++.+|...--.+..+++
T Consensus 70 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~--~-~~~~~~l~~i~~g~~~i~~r~~L~~ 132 (292)
T PRK01911 70 SIGGDGTFLRTATYVGN-------SNIPILGINTGR-------LGFLATVS--K-EEIEETIDELLNGDYTIEERSLLQL 132 (292)
T ss_pred EECCcHHHHHHHHHhcC-------CCCCEEEEecCC-------CCcccccC--H-HHHHHHHHHHHcCCceEEEEeeEEE
Confidence 99999999999987764 356655577776 44432222 1 2355666777788765444444443
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.27 E-value=0.06 Score=53.57 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
.++.+|.|+.. ...++.+++.++|.++. +..... ..+.|.|++.|||||+
T Consensus 3 ~~i~iv~~~~~---~a~~~~~~l~~~l~~~g-~~~~~~--------------------------~~~~D~vi~lGGDGT~ 52 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKVKPLKKIAEEYG-FTVVDH--------------------------PKNANIIVSIGGDGTF 52 (264)
T ss_pred cEEEEEECCCH---HHHHHHHHHHHHHHHCC-CEEEcC--------------------------CCCccEEEEECCcHHH
Confidence 46778888776 45678888888887643 332210 1235799999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecC-CCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEE
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPl-GTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v 230 (476)
=.++..+... ..+|+--|.+ |+ +|+=..++. +.+++.++++.+|....-....+
T Consensus 53 L~a~~~~~~~------~~~pilgIn~~G~-------lGFL~~~~~---~~~~~~l~~i~~g~~~~~~r~~l 107 (264)
T PRK03501 53 LQAVRKTGFR------EDCLYAGISTKDQ-------LGFYCDFHI---DDLDKMIQAITKEEIEVRKYPTI 107 (264)
T ss_pred HHHHHHhccc------CCCeEEeEecCCC-------CeEcccCCH---HHHHHHHHHHHcCCcEEEEeeeE
Confidence 8888776431 2456433555 53 333222121 23556667777787544333333
No 38
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=95.70 E-value=0.2 Score=53.91 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCc-cee-ec--chhHHHHHHhcchhhhhcccCcceEEEE
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPH-EFV-QY--GLACLEKLAELGDFCAKDTRQKMRIVVA 154 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~-~~~-t~--~~~~~~~la~~~~~~a~~~~~~~~Ivv~ 154 (476)
+++.++||.||..- ...++..++...|.....+.+.+.... ..+ .. ..+.. ..-.............|.||+.
T Consensus 193 ~p~~VgIV~n~~k~--~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~DlVIsi 269 (508)
T PLN02935 193 DPQTVLIITKPNST--SVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFV-QTWEDEKEILLLHTKVDLVITL 269 (508)
T ss_pred CCCEEEEEecCCCH--HHHHHHHHHHHHHHhcCCCEEEEechhhhhhcccccccccc-ccccccchhhhcccCCCEEEEE
Confidence 47889999998653 455677888887763222333321100 000 00 00000 0000000000001346899999
Q ss_pred cCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeee
Q 011840 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDS 227 (476)
Q Consensus 155 GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~ 227 (476)
|||||+=.++..+.. ..+||--|.+|+ ||+=..++ + +.+...|+++.+|...--.+
T Consensus 270 GGDGTlL~Aar~~~~-------~~iPILGIN~G~-------LGFLt~i~--~-~e~~~~Le~il~G~y~Ie~R 325 (508)
T PLN02935 270 GGDGTVLWAASMFKG-------PVPPVVPFSMGS-------LGFMTPFH--S-EQYRDCLDAILKGPISITLR 325 (508)
T ss_pred CCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------cceecccC--H-HHHHHHHHHHHcCCceEEEE
Confidence 999999999988754 345655466664 22211111 1 23556666777776543333
No 39
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.22 E-value=0.26 Score=54.44 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchh---hhhcccCcceEEEEc
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDF---CAKDTRQKMRIVVAG 155 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~---~a~~~~~~~~Ivv~G 155 (476)
+.+++.||.|+.. ....++.+++.+.|..+. +++..... .+..+.....+ ......+.|.||+.|
T Consensus 289 ~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~dlvi~lG 356 (569)
T PRK14076 289 KPTKFGIVSRIDN--EEAINLALKIIKYLDSKG-IPYELESF---------LYNKLKNRLNEECNLIDDIEEISHIISIG 356 (569)
T ss_pred CCcEEEEEcCCCC--HHHHHHHHHHHHHHHHCC-CEEEEech---------hhhhhcccccccccccccccCCCEEEEEC
Confidence 3456888888753 355677888888776543 33332110 01111100000 000123468999999
Q ss_pred CChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeee
Q 011840 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDS 227 (476)
Q Consensus 156 GDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~ 227 (476)
||||+=.++..+.. ..+|+--|-+|+-.=|+. +. + +.+...|+++.+|...--.+
T Consensus 357 GDGT~L~aa~~~~~-------~~~PilGin~G~lGFL~~-------~~--~-~~~~~~l~~~~~g~~~i~~r 411 (569)
T PRK14076 357 GDGTVLRASKLVNG-------EEIPIICINMGTVGFLTE-------FS--K-EEIFKAIDSIISGEYEIEKR 411 (569)
T ss_pred CcHHHHHHHHHhcC-------CCCCEEEEcCCCCCcCcc-------cC--H-HHHHHHHHHHHcCCceEEEe
Confidence 99999999987754 356666688887433332 11 1 23455666777887553333
No 40
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.66 E-value=0.42 Score=47.64 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHH
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~ 161 (476)
++.+|.|+ ..+..++.+++.+.|..+. +++. .++.|.|++.|||||+=
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g-~~~~----------------------------~~~~Dlvi~iGGDGT~L 49 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFG-FILD----------------------------EKNPDIVISVGGDGTLL 49 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcC-CccC----------------------------CcCCCEEEEECCcHHHH
Confidence 46777773 3346677888888776542 3210 12457999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeee
Q 011840 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDS 227 (476)
Q Consensus 162 ~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~ 227 (476)
..+..+... ..++|+--|.+|+-.=|+. +. +.+ ++.+++++.+|....-.+
T Consensus 50 ~a~~~~~~~-----~~~iPilGIN~G~lGFL~~-~~-----~~~----~~~~l~~i~~g~y~i~~r 100 (265)
T PRK04885 50 SAFHRYENQ-----LDKVRFVGVHTGHLGFYTD-WR-----PFE----VDKLVIALAKDPGQVVSY 100 (265)
T ss_pred HHHHHhccc-----CCCCeEEEEeCCCceeccc-CC-----HHH----HHHHHHHHHcCCceEEEE
Confidence 998877541 1356655577776433332 21 223 455666677776544443
No 41
>PLN02727 NAD kinase
Probab=94.19 E-value=0.4 Score=54.81 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHh--cc----h---hhhhc-ccC
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE--LG----D---FCAKD-TRQ 147 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~--~~----~---~~a~~-~~~ 147 (476)
.+.+.++||.++.. ...+...++.+.|..+..+++.+.. . .+..+.. .. . ....+ ...
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~--------~a~~l~~~~~~~~~~~~~~~~~~el~~~ 743 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-D--------VHDIFARIPGFGFVQTFYSQDTSDLHER 743 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-c--------hHHHhhccccccccceecccchhhcccC
Confidence 46889999999976 3455667777777664234443321 0 0111100 00 0 00001 124
Q ss_pred cceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCC
Q 011840 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGP 221 (476)
Q Consensus 148 ~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~ 221 (476)
.|.||+.|||||+=.++..+.. ..+||--|-+|+ ||+=..++ +. -+...|+++.+|.
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~-------~~iPILGINlGr-------LGFLTdi~--~e-e~~~~L~~Il~G~ 800 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRG-------AVPPVVSFNLGS-------LGFLTSHY--FE-DFRQDLRQVIHGN 800 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcC-------CCCCEEEEeCCC-------ccccccCC--HH-HHHHHHHHHHcCC
Confidence 6899999999999999988754 456766677774 44422222 21 2445555566665
No 42
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.81 E-value=0.2 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=27.7
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCC
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGT 188 (476)
..|.|++.|||||+=.++..+.. ..+|+--|-+|+
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~-------~~iPilGIN~G~ 67 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNC-------AGCKVVGINTGH 67 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcC-------CCCcEEEEecCC
Confidence 46799999999999998887653 456766677775
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.03 E-value=1.6 Score=43.69 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHH
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~ 161 (476)
++.+++||.. ....++.+++.+.|. + .+++..... .+..+.....+. . ..+.|.||+.|||||+=
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~-g~~~~~~~~---------~~~~~~~~~~~~-~-~~~~D~vi~lGGDGT~L 66 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-P-DWEIIYEME---------AAKALGMDGLDI-E-EINADVIITIGGDGTIL 66 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-c-CCEEEEech---------hhhhcCcccCcc-c-ccCCCEEEEEcCcHHHH
Confidence 4788889754 345667788887773 3 344332110 011110000000 0 12468999999999987
Q ss_pred HHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceeeeeeEEE
Q 011840 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (476)
Q Consensus 162 ~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~iD~~~v~ 231 (476)
.++..+ . +|+--|-+|+-.=|+ .++. +.+.+.|+++.+|...--.+..+.
T Consensus 67 ~a~~~~---------~-~PilGIN~G~lGFL~-------~~~~---~~~~~~l~~i~~g~~~i~~r~~L~ 116 (271)
T PRK01185 67 RTLQRA---------K-GPILGINMGGLGFLT-------EIEI---DEVGSAIKKLIRGEYFIDERMKLK 116 (271)
T ss_pred HHHHHc---------C-CCEEEEECCCCccCc-------ccCH---HHHHHHHHHHHcCCcEEEEeeEEE
Confidence 666532 1 244345777643333 1121 234556666777765544444443
No 44
>PLN02929 NADH kinase
Probab=91.72 E-value=0.94 Score=45.91 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=47.4
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCC---------ccc--ccccCCCCCCCCcHHHHHHHHH
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG---------NDL--SRSFGWGGSFPFAWKSAVKRTL 214 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTg---------Ndf--arslg~g~~~p~~~~~al~~~l 214 (476)
...|.||++|||||+-.++..+ + ..+|+-=|-.|+. |.| .|++|.=..+. + +.+.+.|
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~--~-~~~~~~L 131 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT--A-EDFEQVL 131 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------CCCcEEEEECCCcccccccccccccccccCccccccCC--H-HHHHHHH
Confidence 4678999999999999988877 4 3455544666641 233 35677643322 2 3466777
Q ss_pred HHHHcCCceeeeeeEEE
Q 011840 215 QRASAGPICRLDSWHAV 231 (476)
Q Consensus 215 ~~i~~g~~~~iD~~~v~ 231 (476)
+++.+|....-.+-.+.
T Consensus 132 ~~il~g~~~~~~r~~L~ 148 (301)
T PLN02929 132 DDVLFGRLKPTELSRIS 148 (301)
T ss_pred HHHHcCCceEEEeeeEE
Confidence 77888876544444433
No 45
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.03 E-value=1.1 Score=44.71 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=26.7
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCC
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGT 188 (476)
+.|.||+.|||||+-.++..+.. ..+|+--|-+|+
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~-------~~~PilgIn~G~ 76 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK-------YDIPLIGINRGN 76 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC
Confidence 46899999999999999887754 345544457777
No 46
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=90.50 E-value=0.31 Score=49.16 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=56.5
Q ss_pred ccCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEE--ecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCc
Q 011840 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAI--IPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (476)
Q Consensus 145 ~~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgi--IPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~ 222 (476)
+...|.||-+|||||.--.+.-+.+ ...|.||| =|.|+---++- +..||.++..|+.+ +..|..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~------~~~PViGvNtDP~~Seg~lcL----~~~~~~n~~~al~k----~~sgnF 168 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVID------DSKPVIGVNTDPTGSEGHLCL----PDKYPSNPAGALCK----LTSGNF 168 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhc------cCCceeeecCCCCcCcceEec----cccCCCCcHHHHHH----HHhccH
Confidence 4567899999999999888875544 35677777 58888777664 55667666666654 446666
Q ss_pred eeeeeeEEEEec--CCCcccCCCCCCC
Q 011840 223 CRLDSWHAVIQM--PSGEVVDPPHSLK 247 (476)
Q Consensus 223 ~~iD~~~v~~~~--~~~~~~~~p~~~~ 247 (476)
..+-.-.|..++ .+| +..|..||
T Consensus 169 ~wv~r~rir~tv~g~~g--ip~p~dlh 193 (395)
T KOG4180|consen 169 EWVLRQRIRGTVVGDDG--IPDPIDLH 193 (395)
T ss_pred HHhhhheeEEEEecCCC--CCCchhhh
Confidence 555444455444 233 44455444
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=89.54 E-value=0.47 Score=46.71 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=28.0
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGT 188 (476)
++.|.||+.|||||+-.++..+.. ..+|+--|-+|+
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~-------~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMN-------SGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcC-------CCCeEEEEeCCC
Confidence 457899999999999999987654 356655577775
No 48
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=88.60 E-value=5.7 Score=39.88 Aligned_cols=70 Identities=24% Similarity=0.273 Sum_probs=47.0
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCceee
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (476)
+..+.|++.|||||+-.++..+.. ..+|+--|-+|+ ||+=..++ .+.++++++++.++..+-.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------~~~pilgin~G~-------lGFLt~~~---~~~~~~~~~~~~~~~~~~~ 116 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------LDIPVLGINLGH-------LGFLTDFE---PDELEKALDALLEGEYRIE 116 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------CCCCEEEEeCCC-------cccccccC---HHHHHHHHHHHhcCceEEE
Confidence 567899999999999999988875 346666666663 33322223 2356777777777766655
Q ss_pred eeeEEEE
Q 011840 226 DSWHAVI 232 (476)
Q Consensus 226 D~~~v~~ 232 (476)
.+..+++
T Consensus 117 ~r~~l~~ 123 (281)
T COG0061 117 ERLLLEV 123 (281)
T ss_pred EeEEEEE
Confidence 6665554
No 49
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=82.69 E-value=3.1 Score=43.84 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=38.0
Q ss_pred cceEEEEcCChhHHHHHHHHHhhhccCC---CCCCcEEEecCCCCcccccccCC
Q 011840 148 KMRIVVAGGDGTVGWVLGSVGELNKQGR---EPVPPVAIIPLGTGNDLSRSFGW 198 (476)
Q Consensus 148 ~~~Ivv~GGDGTv~~vln~l~~~~~~~~---~~~~plgiIPlGTgNdfarslg~ 198 (476)
...|+++|||-=++.||....+.-.... ..-..+-+||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 5689999999999999998876432110 1234589999999 999999964
No 50
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.42 E-value=8 Score=39.87 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++|+.-+.+- ....+++...|....+ +.+....+.+ ......+.++.+ + ..+.|.||++|| |+
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~i~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~D~IIavGG-GS 88 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAGIDARFEVFGGEC----TRAEIERLAEIA----R-DNGADVVIGIGG-GK 88 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCCCeEEEEEeCCcC----CHHHHHHHHHHH----h-hcCCCEEEEecC-ch
Confidence 677777633332 2467777777765432 2222222322 113344444433 2 246789999999 88
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecC--CCCccccc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfar 194 (476)
+-.+.-.+.-. ..+|+..||. |||--...
T Consensus 89 ~iD~aK~ia~~------~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 89 TLDTAKAVADY------LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred hhHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 88888777543 3578999997 67765554
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=82.23 E-value=6.9 Score=40.97 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
.++++|+..+.+-... ..++++...|....+ +. +....|.+ ......+.++.+. ..+.|.||++||
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 93 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNP----TVDQVDEAAKLGR-----EFGAQAVIAIGG- 93 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 3688888876654322 245666666654321 11 11222222 1233444444332 235689999999
Q ss_pred hhHHHHHHHHHhhhcc-------------CCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~~~~-------------~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++..+...+.-.-.. .....+|+..||. |||....+.-
T Consensus 94 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 94 GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 7777776655321100 0123578999998 8877666544
No 52
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=81.55 E-value=4.9 Score=41.75 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEee---ecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE---VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~---~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG 156 (476)
++++|+..+... ....+.+.+.|..... +.... ..+.+ .....+++++.+.+ ...+..+.||++||
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k----~~~~v~~~~~~~~~--~~~dr~~~IIAvGG 93 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGEEHK----TLSTLSDLVERALA--LGATRRSVIVALGG 93 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 678888875532 2255667777764321 22211 11211 22334444443321 01233458888887
Q ss_pred ChhHHHHHHHHHhhhccCCCCCCcEEEecC--CCCcc
Q 011840 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNd 191 (476)
|++..+...+.... ...+|+..||. |++.|
T Consensus 94 -Gsv~D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 94 -GVVGNIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred -cHHHHHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 89999887775421 14689999999 66666
No 53
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.54 E-value=8 Score=39.86 Aligned_cols=91 Identities=20% Similarity=0.134 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeee--cCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEV--KPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~--~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+.+ ...+.+.+.+.|... ...+... .|+ ....+++++.+. ..+.|.||++|| |
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~-~~~~~~~~~~p~------~~~v~~~~~~~~-----~~~~D~iIavGG-G 86 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAG-EAFVLRYDGECS------EENIERLAAQAK-----ENGADVIIGIGG-G 86 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcC-eEEEEEeCCCCC------HHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 68888888776 335677777777432 2322211 122 234455544332 235689999998 8
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfar 194 (476)
++..+...+... ..+|+..||. |||-..++
T Consensus 87 s~~D~aK~ia~~------~~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 87 KVLDTAKAVADR------LGVPVITVPTLAATCAAWTP 118 (347)
T ss_pred HHHHHHHHHHHH------hCCCEEEecCccccCcccce
Confidence 999998888653 3579999997 67666554
No 54
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=79.80 E-value=7.9 Score=39.65 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhc-CeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++|+..+.... ..+++++.+.|... ....+....+.+ .....++.++.+ + ..+.|.||++|| |+
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IiaiGG-Gs 89 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSSIEVEIFSDVVPDP----PIEVVAKGIKKF----L-DFKPDIVIALGG-GS 89 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhcCcEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEECC-ch
Confidence 6788888764332 12455566666542 111112222222 123334444332 2 245789999999 77
Q ss_pred HHHHHHHHHhhhcc-CCCCCCcEEEecC--CCCccccc
Q 011840 160 VGWVLGSVGELNKQ-GREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 160 v~~vln~l~~~~~~-~~~~~~plgiIPl--GTgNdfar 194 (476)
+..+...+.-+... .....+|+..||. |||--...
T Consensus 90 ~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~ 127 (332)
T cd08180 90 AIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTS 127 (332)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCC
Confidence 77777654221100 0124579999997 77754443
No 55
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=79.67 E-value=6.6 Score=40.02 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhc-CeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++|+..+..-. ...+++.+.|... ++..+....|+. ......++++++. ..+.|.||++|| |+
T Consensus 24 ~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-Gs 89 (332)
T cd07766 24 DRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNP----TFEEVKEAVERAR-----AAEVDAVIAVGG-GS 89 (332)
T ss_pred CeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-ch
Confidence 6788887655543 3556666666542 111111222221 2244555554432 145788999988 89
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecC--CCC
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPl--GTg 189 (476)
+..++..+.... ...+|+..||. |||
T Consensus 90 ~~D~aK~ia~~~----~~~~p~i~iPTt~~tg 117 (332)
T cd07766 90 TLDTAKAVAALL----NRGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHHHHHh----cCCCCEEEEeCCCchh
Confidence 998887775532 13689999998 555
No 56
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=77.79 E-value=9.8 Score=39.78 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcC--eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQ--VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~--v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.+.... .+++++.+.|.... +..+....|.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 96 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNP----RLETVREGIELC----K-EEKVDFILAVGG-G 96 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-h
Confidence 678888666554322 34566777776532 11122223322 112333333332 2 246789999999 7
Q ss_pred hHHHHHHHHHhhhc------------cCCCCCCcEEEecC--CCCcccccccC
Q 011840 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (476)
Q Consensus 159 Tv~~vln~l~~~~~------------~~~~~~~plgiIPl--GTgNdfarslg 197 (476)
++..+.-.+.-.-. ......+|+-.||. |||--..+.--
T Consensus 97 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~av 149 (382)
T cd08187 97 SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGAV 149 (382)
T ss_pred HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCEE
Confidence 77777665532100 00124578999997 77766655443
No 57
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=77.76 E-value=8.1 Score=40.30 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+.+-. . ..++++...|..... +. +....+.. ......+.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~-~--g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-G 90 (375)
T cd08194 24 KRPLIVTDKVMVK-L--GLVDKLTDSLKKEGIESAIFDDVVSEP----TDESVEEGVKLAK-----EGGCDVIIALGG-G 90 (375)
T ss_pred CeEEEEcCcchhh-c--chHHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 6788887765542 1 255667777765431 21 11222222 1233444444432 246789999999 7
Q ss_pred hHHHHHHHHHhh---hc---------cCCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGEL---NK---------QGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~~---~~---------~~~~~~~plgiIPl--GTgNdfar 194 (476)
++..+.-.+.-+ .. ......+|+..||. |||--..+
T Consensus 91 S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t~ 140 (375)
T cd08194 91 SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVTR 140 (375)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 777766555311 00 00124578999997 66655543
No 58
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.33 E-value=5.7 Score=40.90 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe--eEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++||..+.+- ....+++.+.|+...+ ..+....++. .....+++++.+ + ..+.|.||++|| |
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGES----TYENVERLKKNP----A-VQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCC----CHHHHHHHHHHH----h-hcCCCEEEEeCC-c
Confidence 778888765443 2356777777765432 1222222322 123344444332 2 246789999999 8
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecC--CCCcccc
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfa 193 (476)
++..+.-.+... ..+|+-.||. |||--..
T Consensus 89 s~~D~aK~ia~~------~~~p~i~VPTt~gtgse~t 119 (345)
T cd08171 89 KAIDTVKVLADK------LGKPVFTFPTIASNCAAVT 119 (345)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCccccCcccc
Confidence 888888877653 3578999997 5554333
No 59
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=76.99 E-value=17 Score=37.58 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcc-cCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDT-RQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~-~~~~~Ivv~GGDGT 159 (476)
++++|+..+.... ....+++...|.....+-+..+.|.+ .....++.++.+. +. ...|.||++|| |+
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~p----t~~~v~~~~~~~~----~~~~~~D~IIaiGG-GS 91 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNP----DVAQLDGLYARLW----GDEGACDLVIALGG-GS 91 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCc----CHHHHHHHHHHHH----hcCCCCCEEEEeCC-cc
Confidence 7888888664322 23556677776543222222233332 1233444443322 11 23789999999 77
Q ss_pred HHHHHHHHHhh--hc------------c--CCCCCCcEEEecC--CCCcccccc
Q 011840 160 VGWVLGSVGEL--NK------------Q--GREPVPPVAIIPL--GTGNDLSRS 195 (476)
Q Consensus 160 v~~vln~l~~~--~~------------~--~~~~~~plgiIPl--GTgNdfars 195 (476)
+..+...+.-. +. . .....+|+..||. |||-...+.
T Consensus 92 viD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 92 VIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 77776554222 00 0 0123579999997 788766654
No 60
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=76.55 E-value=10 Score=39.24 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.+-...+ .++++...|..... +. +....|.. ......+.++++. ..+.|.||++|| |
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVEENP----SLETIMEAVEIAK-----KFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 7888887776643322 34556666654321 22 11222222 1233444444332 246789999999 7
Q ss_pred hHHHHHHHHHhhh-----------ccCCCCCCcEEEecC--CCCccccccc
Q 011840 159 TVGWVLGSVGELN-----------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 159 Tv~~vln~l~~~~-----------~~~~~~~~plgiIPl--GTgNdfarsl 196 (476)
++..+.-.+.-+- .......+|+-.||. |||-...+.-
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~a 144 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYS 144 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeE
Confidence 7777776543110 000124579999998 8887777643
No 61
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=76.02 E-value=8.9 Score=39.80 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+.+-. ...++++.+.|..... +. +....+.. ......++++++. ..+.|.||++|| |
T Consensus 24 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG-G 90 (370)
T cd08551 24 RKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNP----TLSNVDAAVAAYR-----EEGCDGVIAVGG-G 90 (370)
T ss_pred CeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 6788887766543 1355566666654321 21 11122221 1234455554432 245789999999 7
Q ss_pred hHHHHHHHHHhhhc------------cCCCCCCcEEEecC--CCCccccccc
Q 011840 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 159 Tv~~vln~l~~~~~------------~~~~~~~plgiIPl--GTgNdfarsl 196 (476)
++..+.-.+.-.-. ......+|+..||. |||--..+..
T Consensus 91 s~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~a 142 (370)
T cd08551 91 SVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFA 142 (370)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeE
Confidence 77777665532210 00123679999998 6775444443
No 62
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=75.54 E-value=18 Score=37.66 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++|+..+.+. .++++...|....+ +.+....+.+ ......+.++.+ + ..+.|.||++|| |+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-GS 86 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEP----SVELVDAAVAEA----R-NAGCDVVIAIGG-GS 86 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEecC-ch
Confidence 688888776553 55667777765321 1111122221 113344444332 2 246789999999 77
Q ss_pred HHHHHHHHHhhh-----------cc-----CCCCCCcEEEecC--CCCcccccc
Q 011840 160 VGWVLGSVGELN-----------KQ-----GREPVPPVAIIPL--GTGNDLSRS 195 (476)
Q Consensus 160 v~~vln~l~~~~-----------~~-----~~~~~~plgiIPl--GTgNdfars 195 (476)
+..+.-.+.-.- .. .....+|+..||. |||--..+.
T Consensus 87 ~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~~ 140 (374)
T cd08183 87 VIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTKN 140 (374)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCCe
Confidence 777665543210 00 0123578999997 677655543
No 63
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=75.42 E-value=25 Score=36.10 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+..+... ....+++...|.....+... ..|.. ....++++.+++. ..+.|.||++|| |++
T Consensus 26 ~~~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~-~~~~~----~~~~v~~~~~~~~-----~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTK----SIAGKKVEALLEDEGEVDVV-IVEDA----TYEEVEKVESSAR-----DIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCeEEE-EeCCC----CHHHHHHHHHHhh-----hcCCCEEEEeCC-chH
Confidence 678888876543 24667777777654212211 22222 2244555554432 135789999998 899
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCC
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTg 189 (476)
..+...+.-. ..+|+-.||.=.+
T Consensus 91 ~D~aK~~a~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 91 IDVAKVAAYK------LGIPFISVPTAAS 113 (339)
T ss_pred HHHHHHHHHh------cCCCEEEecCccc
Confidence 9998888642 4689999997444
No 64
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=75.06 E-value=11 Score=38.90 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhh-cC--eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGK-EQ--VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~-~~--v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
++++|+..+..-. ...+++.+.|.. .. .+-+....+.+ ....+.++++.+.+. .....+.||++||
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k----~~~~v~~~~~~~~~~--~~~r~d~IIaiGG- 92 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYK----TFETVTRILERAIAL--GANRRTAIVAVGG- 92 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCC----CHHHHHHHHHHHHHc--CCCCCcEEEEECC-
Confidence 6788887754432 356667777654 22 12222222211 233445544433211 0234688888887
Q ss_pred hhHHHHHHHHHhhhccCCCCCCcEEEecC--CCCccc
Q 011840 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (476)
Q Consensus 158 GTv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdf 192 (476)
|++..+...+...- ...+|+-.||. ++++|-
T Consensus 93 Gsv~D~ak~vA~~~----~rgip~i~VPTTlla~~ds 125 (344)
T cd08169 93 GATGDVAGFVASTL----FRGIAFIRVPTTLLAQSDS 125 (344)
T ss_pred cHHHHHHHHHHHHh----ccCCcEEEecCCccccccc
Confidence 88888887775431 14679999998 666664
No 65
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=73.11 E-value=16 Score=38.02 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEe---eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~---~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
++++|+..+.+-... ..++++.+.|+... +++. ...|.. .....++.++.+ + ..+.|.||++||
T Consensus 24 ~r~livt~~~~~~~~--g~~~~v~~~L~~~g-~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIavGG- 90 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFLDKVEAYLKEAG-IEVEVFEGVEPDP----SVETVLKGAEAM----R-EFEPDWIIALGG- 90 (375)
T ss_pred CeEEEEeCchHHHhC--ChHHHHHHHHHHcC-CeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 677777655443222 35566777776432 2222 222222 113344444332 2 245689999999
Q ss_pred hhHHHHHHHHHhh---hc----------c--CCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGEL---NK----------Q--GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~---~~----------~--~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++-.+.-.+.-. .. . .....+|+..||. |||--....-
T Consensus 91 GSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~a 146 (375)
T cd08179 91 GSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAFS 146 (375)
T ss_pred ccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCeE
Confidence 6666666554311 00 0 0013468999997 7776555433
No 66
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=73.03 E-value=17 Score=37.37 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+..+.. .....+++.+.|.......+....+.. .....+++++.+ + ..+.|.||++|| |++
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHT----PVEVTEAAVAAA----R-EAGADGIVAIGG-GST 89 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-cHH
Confidence 57777764322 223667778777654221122222222 112334444332 2 245789999998 899
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecC-CCCc
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGN 190 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPl-GTgN 190 (476)
..+.-.+.-. ..+|+-.||. -||.
T Consensus 90 iD~aK~ia~~------~~~p~i~IPTtatgs 114 (337)
T cd08177 90 IDLAKAIALR------TGLPIIAIPTTLSGS 114 (337)
T ss_pred HHHHHHHHHH------hcCCEEEEcCCchhh
Confidence 9988887643 3578999995 2444
No 67
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=73.03 E-value=11 Score=39.47 Aligned_cols=105 Identities=13% Similarity=0.254 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+..-. ...++++...|....+ +. +..+.++. .....+++++.+. ..+.|.||++|| |
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNP----TITNVKDGLAVFK-----KEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5777776654432 1356667777764321 22 11222222 1233444444332 246789999999 7
Q ss_pred hHHHHHHHHHhhh------------ccCCCCCCcEEEecC--CCCcccccccCC
Q 011840 159 TVGWVLGSVGELN------------KQGREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 159 Tv~~vln~l~~~~------------~~~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
++..+.-.+.-+- .......+|+..||. |||--..+.--+
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~avi 149 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYVI 149 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEEE
Confidence 7766665543110 000124579999998 888776554433
No 68
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=72.72 E-value=15 Score=38.44 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=58.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.+-.. ...++++.+.|....+ +. +..+.|.. .....++.++.+ + ..+.|.||++|| |
T Consensus 26 ~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNP----TTTTVMEGAALA----R-EEGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-c
Confidence 78889887765212 2366677777765321 21 12223322 123344444332 2 246789999999 7
Q ss_pred hHHHHHHHHHhhhc-----------------cCCCCCCcEEEecC--CCCcccccccCC
Q 011840 159 TVGWVLGSVGELNK-----------------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 159 Tv~~vln~l~~~~~-----------------~~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
++-.+.-.+.-.-. ......+|+..||. |||--..+.--+
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi 152 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVI 152 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEE
Confidence 77766655532100 00123578999996 887766665443
No 69
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=72.06 E-value=18 Score=32.91 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccC-cceEEEEcCChhHHHHHHHHHh
Q 011840 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAGGDGTVGWVLGSVGE 169 (476)
Q Consensus 92 G~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~-~~~Ivv~GGDGTv~~vln~l~~ 169 (476)
|+..-....++....|....+ |++.+...+. .+..+.+++++++ .++ .-.|.++|+++-+.-++.++..
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR----~p~~l~~~~~~~~-----~~~~~viIa~AG~~a~Lpgvva~~t~ 78 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHR----TPERLLEFVKEYE-----ARGADVIIAVAGMSAALPGVVASLTT 78 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTT----SHHHHHHHHHHTT-----TTTESEEEEEEESS--HHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccC----CHHHHHHHHHHhc-----cCCCEEEEEECCCcccchhhheeccC
Confidence 333344567777777776553 7877654432 4555666766543 122 3467888999999999998863
Q ss_pred hhccCCCCCCcEEEecCCCC
Q 011840 170 LNKQGREPVPPVAIIPLGTG 189 (476)
Q Consensus 170 ~~~~~~~~~~plgiIPlGTg 189 (476)
.|-||+ |.-++
T Consensus 79 --------~PVIgv-P~~~~ 89 (150)
T PF00731_consen 79 --------LPVIGV-PVSSG 89 (150)
T ss_dssp --------S-EEEE-EE-ST
T ss_pred --------CCEEEe-ecCcc
Confidence 456666 65443
No 70
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=71.72 E-value=23 Score=37.22 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEE-eeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
-++++|+--|.-- ...+.+.+.+.|+...+ |.+ ..+.|++-. ...++-++.+ + ..+.|.||+.||
T Consensus 29 ~~r~liVTd~~~~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~----~~v~~~~~~~----~-~~~~D~iIalGG- 95 (377)
T COG1454 29 AKRALIVTDRGLA---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI----ETVEAGAEVA----R-EFGPDTIIALGG- 95 (377)
T ss_pred CCceEEEECCccc---cchhHHHHHHHHHhcCCeEEEecCCCCCCCH----HHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 3788888777522 23477788888877651 222 233444321 2333333222 2 246789999999
Q ss_pred hhHHHHHHHHHhhhcc------------CCCCCCcEEEecC--CCCcccccccCC
Q 011840 158 GTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 158 GTv~~vln~l~~~~~~------------~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
|++-.++-++.-+-.. ...+.+||-.||. |||-...+.--+
T Consensus 96 GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVi 150 (377)
T COG1454 96 GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVI 150 (377)
T ss_pred ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEE
Confidence 6766666554322110 0123478999997 899888876655
No 71
>PRK15138 aldehyde reductase; Provisional
Probab=70.85 E-value=20 Score=37.71 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+--+.+=. ....++++.+.|....+..+..+.|.. .....++.++.+ + ..+.|.||++|| |++
T Consensus 30 ~~~livt~~~~~~--~~g~~~~v~~~L~~~~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-GS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVK--KTGVLDQVLDALKGMDVLEFGGIEPNP----TYETLMKAVKLV----R-EEKITFLLAVGG-GSV 97 (387)
T ss_pred CeEEEECCCchHH--hcCcHHHHHHHhcCCeEEEECCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-hHH
Confidence 6777775444321 123456677777532222222233332 123344444433 2 246789999999 555
Q ss_pred HHHHHHHHhh---h------------ccCCCCCCcEEEecC--CCCccccccc
Q 011840 161 GWVLGSVGEL---N------------KQGREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 161 ~~vln~l~~~---~------------~~~~~~~~plgiIPl--GTgNdfarsl 196 (476)
-.+.-.+.-. . .......+|+..||. |||-......
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~a 150 (387)
T PRK15138 98 LDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGA 150 (387)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCE
Confidence 5444443210 0 000123468999997 8887665544
No 72
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=69.36 E-value=8.7 Score=40.12 Aligned_cols=60 Identities=33% Similarity=0.561 Sum_probs=41.5
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccccccCCCCCCCCcHHHHHHHHHHHHHcCCce
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPIC 223 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfarslg~g~~~p~~~~~al~~~l~~i~~g~~~ 223 (476)
..|.||..||||||--+..-+.+ ..||+--.-+|| ||+=..|+. +..++.+..+.+++..
T Consensus 168 ~~D~iItLGGDGTvL~aS~LFq~-------~VPPV~sFslGs-------lGFLtpf~f---~~f~~~l~~v~~~~~~ 227 (409)
T KOG2178|consen 168 RFDLIITLGGDGTVLYASSLFQR-------SVPPVLSFSLGS-------LGFLTPFPF---ANFQEQLARVLNGRAA 227 (409)
T ss_pred ceeEEEEecCCccEEEehhhhcC-------CCCCeEEeecCC-------ccccccccH---HHHHHHHHHHhcCcce
Confidence 46899999999999777665543 578887777774 566554443 3456667777788743
No 73
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=69.17 E-value=15 Score=37.75 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcC-eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQ-VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~-v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
.++++|+..+..-. ...+++.+.|.... .+.+......+ ........+++++.+.+. .....+.||++|| |
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e-~~~~~~~v~~~~~~~~~~--~~~r~d~IIaiGG-G 95 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGE-ASKSLETLEKLYDALLEA--GLDRKSLIIALGG-G 95 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CcCCHHHHHHHHHHHHHc--CCCCCCeEEEECC-h
Confidence 36888888766543 35667777776532 12211111110 011224444544433210 1234578888888 8
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
++..+...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 8888887775321 14688999996
No 74
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=69.07 E-value=36 Score=35.30 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++||.-+.+- ....+++...|..... +.+....+++ .....+++++.+ + ..+.|.||++|| |+
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep----~~~~v~~~~~~~----~-~~~~d~IIavGG-Gs 95 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGEC----SDNEIDRLVAIA----E-ENGCDVVIGIGG-GK 95 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCC----CHHHHHHHHHHH----H-hcCCCEEEEecC-hH
Confidence 678888754432 2366777777765431 2122222222 113444444433 2 235789999999 88
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecC--CCCccccc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfar 194 (476)
+..+...+.-. ..+|+..||. |||-....
T Consensus 96 v~D~aK~iA~~------~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 96 TLDTAKAVADY------LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccC
Confidence 88888877643 3678999998 55544443
No 75
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=68.60 E-value=28 Score=36.25 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
.++++|+..+..-. ...++++...|....+ +. +....+.+ .....++.++.+ + ..+.|.||++||
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDP----TIENVEAGLALY----R-ENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 36888887654422 1245667777755321 21 22222222 112334444332 2 246789999999
Q ss_pred hhHHHHHHHHHhhhcc-------------CCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~~~~-------------~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++..+.-.+.-.-.. .....+|+-.||. |||-...+.-
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~a 146 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIAA 146 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCeE
Confidence 6777666554321100 0012368999997 7776555543
No 76
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=67.88 E-value=16 Score=37.82 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCCCChhHHHHHHHHhhhhcC--eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 82 PMVVFINSRSGGRHGPELKERLQELMGKEQ--VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 82 ~~lvivNP~SG~~~~~~~~~~l~~~L~~~~--v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
+++||..+ +-.. ..+.+++...|+... +..+....+.. ....++++++.+. ..+.|.||++|| |+
T Consensus 23 r~lvVt~~-~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 23 RVLVVTDP-SLSK--SGLVDRVLDALEEAGIEVQVFDGVGPNP----TLEDVDEAAEQAR-----KFGADCIIAIGG-GS 89 (366)
T ss_dssp EEEEEEEH-HHHH--HTHHHHHHHHHHHTTCEEEEEEEESSS-----BHHHHHHHHHHHH-----HTTSSEEEEEES-HH
T ss_pred CEEEEECc-hHHh--CccHHHHHHHHhhCceEEEEEecCCCCC----cHHHHHHHHHHHH-----hcCCCEEEEcCC-CC
Confidence 88899887 4422 236778887775432 11222222222 2244555554432 246789999999 66
Q ss_pred HHHHHHHHHhhhcc-------------CCCCCCcEEEecC--CCCcccccccCC
Q 011840 160 VGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 160 v~~vln~l~~~~~~-------------~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
+-.++-.+.-+-.. .....+|+-.||. |||-.+.+...+
T Consensus 90 ~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi 143 (366)
T PF00465_consen 90 VMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVI 143 (366)
T ss_dssp HHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEE
T ss_pred cCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccc
Confidence 66555554322110 0122379999998 677666655443
No 77
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=67.70 E-value=28 Score=35.89 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++++|+..+.+-. ...+++...|....+ +++....+.. ......++++.+. ..+.|.||++|| |+
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGEC----STEEVVKALCGAE-----EQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-cH
Confidence 5677777655432 355677777765432 2332222111 1233444444332 235789999998 89
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecC--CCCccccc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfar 194 (476)
+..+...+... ...|+..||. |||-....
T Consensus 89 ~~D~aK~ia~~------~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 89 TLDTAKAVADR------LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 99888887643 3579999998 66654443
No 78
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=67.48 E-value=18 Score=37.44 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE---EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEc
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~G 155 (476)
.++++|+..+... ..+.+++.+.|..... +. +....+.+ ....+.++++.+.+. .....+.||++|
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~----~~~~v~~~~~~~~~~--~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYK----SLETLEKIYDALLEA--GLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence 3688888876552 2367777777765421 22 11122211 223444444333210 123458899988
Q ss_pred CChhHHHHHHHHHhhhccCCCCCCcEEEecC--CCCccc
Q 011840 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (476)
Q Consensus 156 GDGTv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdf 192 (476)
| |++..++..+.... ...+|+..||. ++.+|-
T Consensus 101 G-Gsv~D~aK~iA~~~----~~gip~i~IPTT~~s~~ds 134 (358)
T PRK00002 101 G-GVIGDLAGFAAATY----MRGIRFIQVPTTLLAQVDS 134 (358)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEcCchhhhcccc
Confidence 8 89998887775321 24689999998 454443
No 79
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=66.11 E-value=31 Score=36.15 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-e-EEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.. ....+++++.+.|....+ + -+..+.|.+ .....++.++.+ + ..+.|.||++|| |
T Consensus 32 ~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np----~~~~v~~~~~~~----~-~~~~D~IiaiGG-G 98 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNP----TTENVAAGLKLL----K-ENNCDSVISLGG-G 98 (383)
T ss_pred CEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-HcCCCEEEEeCC-c
Confidence 67777654321 112356677777765432 1 122233332 123344444332 2 246789999999 5
Q ss_pred hHHHHHHHHHh---hhc---------cCCCCCCcEEEecC--CCCcccccccCC
Q 011840 159 TVGWVLGSVGE---LNK---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 159 Tv~~vln~l~~---~~~---------~~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
++-.+.-.+.- ... ......+|+..||. |||-...+.--+
T Consensus 99 S~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 99 SPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 55554444321 000 00124579999998 888877765544
No 80
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=65.16 E-value=23 Score=36.30 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++||..+.+-.. ..+++.+.|.... +++....+...........+++++.+. + +.+.||++|| |++
T Consensus 25 ~kvlivtd~~~~~~----~~~~i~~~L~~~~-~~~~i~~~~~~~~p~~~~v~~~~~~~~----~--~~d~IIaiGG-Gsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKV----AGKEIIERLESNN-FTKEVLERDSLLIPDEYELGEVLIKLD----K--DTEFLLGIGS-GTI 92 (332)
T ss_pred CcEEEEECCcHHHH----HHHHHHHHHHHcC-CeEEEEecCCCCCCCHHHHHHHHHHhh----c--CCCEEEEECC-cHH
Confidence 67888887665422 2356666775432 222111000000002234455554432 2 6789999999 899
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCC
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLG 187 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlG 187 (476)
..+...+.-. ..+|+-.||.=
T Consensus 93 ~D~aK~iA~~------~gip~I~VPTT 113 (332)
T cd08549 93 IDLVKFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHHHHHH------cCCCEEEeCCC
Confidence 9998877632 46799999974
No 81
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=64.84 E-value=27 Score=36.16 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcC--eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQ--VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~--v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+.+- ....+.+.|.... ++-+....+.+ .....+++++.+ + ..+.|.||++|| |
T Consensus 24 ~~~livtd~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~D~IIavGG-G 87 (367)
T cd08182 24 KRVLLVTGPRSA------IASGLTDILKPLGTLVVVFDDVQPNP----DLEDLAAGIRLL----R-EFGPDAVLAVGG-G 87 (367)
T ss_pred CeEEEEeCchHH------HHHHHHHHHHHcCCeEEEEcCcCCCc----CHHHHHHHHHHH----H-hcCcCEEEEeCC-c
Confidence 677777654443 3344555565432 12122222322 123344444332 2 235689999998 7
Q ss_pred hHHHHHHHHHhhh----------------ccCCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGELN----------------KQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~~~----------------~~~~~~~~plgiIPl--GTgNdfar 194 (476)
++..+.-.+.-.- .......+|+-.||. |||--...
T Consensus 88 s~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~ 141 (367)
T cd08182 88 SVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTP 141 (367)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCC
Confidence 7777776653320 000124578999998 66654443
No 82
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=64.53 E-value=33 Score=36.03 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEe---eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~---~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
++++|+.-+..-. ...++++...|.... +++. ...|.+ .....++.++.+ + ..+.|.||++||
T Consensus 22 ~k~liVtd~~~~~---~g~~~~v~~~L~~~g-i~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG- 87 (398)
T cd08178 22 KRAFIVTDRFMVK---LGYVDKVIDVLKRRG-VETEVFSDVEPDP----SLETVRKGLELM----N-SFKPDTIIALGG- 87 (398)
T ss_pred CeEEEEcChhHHh---CccHHHHHHHHHHCC-CeEEEecCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 6777776433211 125666777776542 2221 222322 123344444332 2 246789999999
Q ss_pred hhHHHHHHHHHhhh--c-----------c----------CCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGELN--K-----------Q----------GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~~--~-----------~----------~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++..+.-.+.-+- . . .....+|+-.||. |||-...+..
T Consensus 88 GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~a 151 (398)
T cd08178 88 GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFA 151 (398)
T ss_pred ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeE
Confidence 67766665543110 0 0 0013568999997 7877665444
No 83
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=64.20 E-value=28 Score=36.09 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+..-. ...++++.+.|..... +. +....+.. ......+.++++ + ..+.|.||++|| |
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG-G 91 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNP----TEAAVEAGLAAY----R-AGGCDGVIAFGG-G 91 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 5777776654421 1245567777765321 11 21222222 112344444333 2 246789999999 7
Q ss_pred hHHHHHHHHHhhhc--------------c--CCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGELNK--------------Q--GREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~~~~--------------~--~~~~~~plgiIPl--GTgNdfar 194 (476)
++..++-.+.-.-. . .....+|+..||. |||--..+
T Consensus 92 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~ 145 (370)
T cd08192 92 SALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGR 145 (370)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCC
Confidence 87777766533210 0 0013478999997 66654443
No 84
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=63.52 E-value=35 Score=35.31 Aligned_cols=49 Identities=31% Similarity=0.298 Sum_probs=29.6
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhh----------cc--CCCCCCcEEEecC--CCCccccccc
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELN----------KQ--GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~----------~~--~~~~~~plgiIPl--GTgNdfarsl 196 (476)
+.|.||++|| |++-.+.-.+.-.- .. .....+|+-.||. |||--..+.-
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 5789999999 66665554442110 00 0013468999996 8887666544
No 85
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=63.41 E-value=25 Score=36.15 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE---EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG 156 (476)
++++|+.++..- ....+++.+.|..... +. +....+.+ .....+++++.+.+. .....+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~----~~~~v~~~~~~~~~~--~~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESK----SLETVQRLYDQLLEA--GLDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCC----CHHHHHHHHHHHHHc--CCCCCCEEEEEcC
Confidence 788888865543 2356777777765421 22 21111211 223444444433210 1133578999988
Q ss_pred ChhHHHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
|++..++..+.... ...+|+..||.
T Consensus 91 -Gsv~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHHH----ccCCCEEEecC
Confidence 88888887775321 24679999997
No 86
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=61.43 E-value=61 Score=33.04 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=29.0
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCc
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGN 190 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgN 190 (476)
+.+.||++|| |++..+...+... ..+|+-.||.=.++
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~------~~~p~i~vPTt~~t 111 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFL------RGIPLSVPTTNLND 111 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhh------cCCCEEEecCcccc
Confidence 4688999998 8999999888652 46899999984433
No 87
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=61.08 E-value=54 Score=34.51 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe----eEEeeecCcceeecch-hHHHHHHhcchhhhhcccCcceEEEE
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v----~dl~~~~p~~~~t~~~-~~~~~la~~~~~~a~~~~~~~~Ivv~ 154 (476)
.++++||..+.--. ....+.+.+...|+.... |+.....+.....+.. ....++.+.+.+ ......+.||++
T Consensus 42 ~~r~liVtD~~v~~-~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~--~~~dr~d~IIai 118 (389)
T PRK06203 42 PKKVLVVIDSGVLR-AHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR--HGIDRHSYVLAI 118 (389)
T ss_pred CCeEEEEECchHHH-hhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH--cCCCCCceEEEe
Confidence 47788888765443 112366778888765432 3322111111011111 223333332221 012345688888
Q ss_pred cCChhHHHHHHHHHhhhccCCCCCCcEEEecC--CCCcc
Q 011840 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (476)
Q Consensus 155 GGDGTv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNd 191 (476)
|| |++..++..+.... ...+|+-.||. |+.+|
T Consensus 119 GG-Gsv~D~ak~iA~~~----~rgip~I~IPTTlla~vd 152 (389)
T PRK06203 119 GG-GAVLDMVGYAAATA----HRGVRLIRIPTTVLAQND 152 (389)
T ss_pred CC-cHHHHHHHHHHHHh----cCCCCEEEEcCCCccccC
Confidence 88 88888887775421 14679999996 34444
No 88
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=60.50 E-value=14 Score=36.44 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+.-+.. ....-+++++.|+.. .|++...... ..+-....+.++.+++. ..+.+.||++|| ||+
T Consensus 20 ~~~lvv~d~~t----~~~~g~~v~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~d~ii~vGg-G~i 87 (250)
T PF13685_consen 20 KKVLVVTDENT----YKAAGEKVEESLKSA-GIEVAVIEEF-VGDADEDEVEKLVEALR-----PKDADLIIGVGG-GTI 87 (250)
T ss_dssp SEEEEEEETTH----HHHHHHHHHHHHHTT-T-EEEEEE-E-E---BHHHHHHHHTTS-------TT--EEEEEES-HHH
T ss_pred CcEEEEEcCCH----HHHHHHHHHHHHHHc-CCeEEEEecC-CCCCCHHHHHHHHHHhc-----ccCCCEEEEeCC-cHH
Confidence 57888776542 344556777777654 3554432100 00112234455554331 246678999988 999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCCcc
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTgNd 191 (476)
+.+.--+... .+.|+-.+|.=-.||
T Consensus 88 ~D~~K~~A~~------~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 88 IDIAKYAAFE------LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHHHH------HT--EEEEES--SSG
T ss_pred HHHHHHHHHh------cCCCEEEeccccccc
Confidence 9999887653 478999999987777
No 89
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=60.47 E-value=47 Score=34.99 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhcCe-eEEe-eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhHHHHHHHHHhh--hc-
Q 011840 98 ELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGEL--NK- 172 (476)
Q Consensus 98 ~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~vln~l~~~--~~- 172 (476)
.+++++...|....+ +.+. ...|.+ .....++.++.+ + ..+.|.||++|| |++-.+.-.+.-. +.
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P----~~~~v~~~~~~~----r-~~~~D~IiavGG-GS~iD~AKaia~~~~~~~ 133 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEP----CITDVCAAVAQL----R-ESGCDGVIAFGG-GSVLDAAKAVALLVTNPD 133 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCcCEEEEeCC-hHHHHHHHHHHHHHhCCC
Confidence 356677777765432 2211 223222 113334444332 2 257899999999 5555444333111 00
Q ss_pred ---------cCCCCCCcEEEecC--CCCcccccccCC
Q 011840 173 ---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (476)
Q Consensus 173 ---------~~~~~~~plgiIPl--GTgNdfarslg~ 198 (476)
......+|+..||. |||-...+.--+
T Consensus 134 ~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi 170 (395)
T PRK15454 134 STLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVI 170 (395)
T ss_pred ccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEE
Confidence 00113568999997 888776665443
No 90
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=58.94 E-value=78 Score=33.13 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE---EeeecCcceeecch-hHHHHHHhcchhhhhcccCcceEEEE
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~-~~~~~la~~~~~~a~~~~~~~~Ivv~ 154 (476)
.++++|+.++.-.. ....+.+.+...|....+ +. .....|........ ....++.+.+.+ ......+.||+.
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~--~~~~r~~~IIal 106 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR--HGIDRHSYVIAI 106 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH--cCCCcCcEEEEE
Confidence 47888998876554 222456777777754331 21 11112221112221 233344433221 012345689999
Q ss_pred cCChhHHHHHHHHHhhhccCCCCCCcEEEecCC
Q 011840 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (476)
Q Consensus 155 GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlG 187 (476)
|| |++..++..+.... ...+|+-.||.=
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 98 99999998876531 246899999964
No 91
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=58.56 E-value=39 Score=35.30 Aligned_cols=104 Identities=17% Similarity=0.322 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEE-eeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
.++++|+..+..-. ..+++++...|....+ +.+ ....|.+ .....++.++.+ + ..+.|.||++||
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNP----TITVVKAGVAAF----K-ASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 36888887654322 1255666777764321 211 1222222 123334444332 2 245689999999
Q ss_pred hhHHHHHHHHHhhhc------------c--CCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGELNK------------Q--GREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~~~------------~--~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++-.+.-.+.-+-. . .....+|+-.||. |||--..+..
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 677766644321100 0 0123578999998 7776555544
No 92
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=58.40 E-value=35 Score=35.68 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEe---eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCC
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~---~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (476)
++++|+..+.... ...++++.+.|.... +++. .+.|.. ......+.++.+ + ..+.|.||++||
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~-~~~~~f~~v~~~~----~~~~v~~~~~~~----~-~~~~D~IIaiGG- 88 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAG-VEVEVFDGVLPDL----PRSELCDAASAA----A-RAGPDVIIGLGG- 88 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcC-CeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 6788888655432 235666777776542 2222 122111 011122222222 2 246789999998
Q ss_pred hhHHHHHHHHHhhhc------------cCCCCCCcEEEecC--CCCccccccc
Q 011840 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (476)
Q Consensus 158 GTv~~vln~l~~~~~------------~~~~~~~plgiIPl--GTgNdfarsl 196 (476)
|++..++-.+.-.-. ......+|+..||. |||-...+.-
T Consensus 89 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~a 141 (386)
T cd08191 89 GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPVA 141 (386)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCeE
Confidence 777777766532110 00113579999997 7776666543
No 93
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=58.14 E-value=36 Score=35.54 Aligned_cols=104 Identities=15% Similarity=0.333 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEE-eeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+..-. ...++++...|....+ +.+ ....|.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 31 ~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 97 (382)
T PRK10624 31 KKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNP----TIEVVKEGVEVF----K-ASGADYLIAIGG-G 97 (382)
T ss_pred CEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-h
Confidence 6788887653322 1256667777754321 211 1222222 113333333332 2 235789999999 7
Q ss_pred hHHHHHHHHHhh--hc------------cCCCCCCcEEEecC--CCCcccccccC
Q 011840 159 TVGWVLGSVGEL--NK------------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (476)
Q Consensus 159 Tv~~vln~l~~~--~~------------~~~~~~~plgiIPl--GTgNdfarslg 197 (476)
++-.+.-.+.-. +. ......+|+-.||. |||--..+..-
T Consensus 98 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~av 152 (382)
T PRK10624 98 SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYV 152 (382)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceee
Confidence 777776543210 00 00123579999997 77766665443
No 94
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=57.31 E-value=29 Score=35.73 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEe-eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLS-EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~-~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.+- ....+++.+.|....+ +.+. ...++. ........++++++. + +.|.||++|| |
T Consensus 24 ~~~livtd~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~~~--~pt~~~v~~~~~~~~----~--~~d~IIaIGG-G 90 (348)
T cd08175 24 KKALIVADENTY----AAAGKKVEALLKRAGVVVLLIVLPAGDL--IADEKAVGRVLKELE----R--DTDLIIAVGS-G 90 (348)
T ss_pred CcEEEEECCcHH----HHHHHHHHHHHHHCCCeeEEeecCCCcc--cCCHHHHHHHHHHhh----c--cCCEEEEECC-c
Confidence 577777654332 2234667777765432 2111 111210 012234445544432 2 6789999999 8
Q ss_pred hHHHHHHHHHhhhccCCCCCCcEEEecCC
Q 011840 159 TVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (476)
Q Consensus 159 Tv~~vln~l~~~~~~~~~~~~plgiIPlG 187 (476)
++..+...+.-. ..+|+-.||.=
T Consensus 91 s~~D~aK~vA~~------~~~p~i~IPTT 113 (348)
T cd08175 91 TINDITKYVSYK------TGIPYISVPTA 113 (348)
T ss_pred HHHHHHHHHHHh------cCCCEEEecCc
Confidence 888888887643 46799999973
No 95
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=57.22 E-value=49 Score=34.13 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++||..+.+-.. ..+++.+.|.....+... ..|.. .....+++++++. ..+.+.||++|| |++
T Consensus 35 ~~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~-~~~~~----t~~~v~~~~~~~~-----~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKI----AGDRVEENLEDAGDVEVV-IVDEA----TMEEVEKVEEKAK-----DVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHHH----HHHHHHHHHHhcCCeeEE-eCCCC----CHHHHHHHHHHhh-----ccCCCEEEEeCC-chH
Confidence 68888888776532 345566666433112111 22222 2234455554432 134688999998 899
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCCcc
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTgNd 191 (476)
..+...+.-. ..+|+-.||.=-++|
T Consensus 100 ~D~ak~vA~~------rgip~I~IPTT~~td 124 (350)
T PRK00843 100 IDVAKLAAYR------LGIPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHHh------cCCCEEEeCCCccCC
Confidence 9998887632 467899999744444
No 96
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=56.77 E-value=39 Score=35.16 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+.-.. ...++++...|.+... +. +....+.. ......+.++.+. ..+.|.||++|| |
T Consensus 27 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-G 93 (376)
T cd08193 27 KRVLVVTDPGILK---AGLIDPLLASLEAAGIEVTVFDDVEADP----PEAVVEAAVEAAR-----AAGADGVIGFGG-G 93 (376)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 6777776543111 1245666667764331 21 12222222 1234445554432 246789999999 7
Q ss_pred hHHHHHHHHHhhhc------------cCCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~~~~------------~~~~~~~plgiIPl--GTgNdfar 194 (476)
++..+.-.+.-.-. ......+|+-.||. |||-....
T Consensus 94 s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 94 SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 77777765532210 00013578999997 66654444
No 97
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=54.15 E-value=50 Score=34.26 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCc-ceEEEEcCC
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGD 157 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~-~~Ivv~GGD 157 (476)
.++++||..+..-. ...+++.+.|..... +...+....+ ........+++++++.+. ..... +.||++||
T Consensus 26 ~~~~lvVtd~~v~~----~~~~~v~~~l~~~g~~~~~~v~~~~e-~~~s~~~v~~~~~~l~~~--~~~r~~d~IVaiGG- 97 (354)
T cd08199 26 SGRRFVVVDQNVDK----LYGKKLREYFAHHNIPLTILVLRAGE-AAKTMDTVLKIVDALDAF--GISRRREPVLAIGG- 97 (354)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHHc--CCCCCCCEEEEECC-
Confidence 47788888765532 244566676754321 2211111110 011234445554433211 12233 88888888
Q ss_pred hhHHHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 158 GTv~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
|++..++..+.... ...+|+-.||.
T Consensus 98 G~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 89998888876321 24688999998
No 98
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.08 E-value=88 Score=32.60 Aligned_cols=101 Identities=22% Similarity=0.284 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEE-eeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+..+..-. ...++++...|..... +.+ ....+.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 29 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG-G 95 (377)
T cd08188 29 KKVLLVSDPGVIK---AGWVDRVIESLEEAGLEYVVFSDVSPNP----RDEEVMAGAELY----L-ENGCDVIIAVGG-G 95 (377)
T ss_pred CeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6777776543221 1245666677754321 211 1122221 112333333322 2 246789999999 6
Q ss_pred hHHHHHHHHHh---hhc---------cCCCCCCcEEEecC--CCCccccc
Q 011840 159 TVGWVLGSVGE---LNK---------QGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 159 Tv~~vln~l~~---~~~---------~~~~~~~plgiIPl--GTgNdfar 194 (476)
++-.+.-.+.- ... ....+.+|+-.||. |||--.++
T Consensus 96 sviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 96 SPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 77666643321 100 00112468999998 88866555
No 99
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=50.97 E-value=4.8 Score=34.88 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=28.8
Q ss_pred heehhhhcCCce-eeecccccccccccccchhhhh
Q 011840 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAM 49 (476)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~ 49 (476)
+++..+..|..| |||..|..|+-.++.+||....
T Consensus 65 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 65 FIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp HHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred hhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 445667788888 9999999999999999998753
No 100
>PLN02834 3-dehydroquinate synthase
Probab=50.36 E-value=62 Score=34.60 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcC----eeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEc
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQ----VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~----v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~G 155 (476)
.++++||.++... ....+.+.+.|.... +|++.....+. ......++++++.+.+ ...+..+.||++|
T Consensus 100 g~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~--~ksl~~v~~~~~~l~~--~~~dr~~~VIAiG 171 (433)
T PLN02834 100 GKRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEK--YKDMETLMKVFDKALE--SRLDRRCTFVALG 171 (433)
T ss_pred CCEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcC--CCCHHHHHHHHHHHHh--cCCCcCcEEEEEC
Confidence 3788888876543 236667777776532 12222111111 1123344444433221 0123355888888
Q ss_pred CChhHHHHHHHHHhhhccCCCCCCcEEEecCC
Q 011840 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (476)
Q Consensus 156 GDGTv~~vln~l~~~~~~~~~~~~plgiIPlG 187 (476)
| |++..+...+.... ...+|+-.||.-
T Consensus 172 G-Gsv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 172 G-GVIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred C-hHHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 8 89998887654321 246899999993
No 101
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=49.74 E-value=91 Score=33.00 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eE-EeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCCh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (476)
++++|+.-+..-. ...++++.+.|....+ +. +....|.. ......+.++.+ + ..+.|.||++|| |
T Consensus 24 ~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 90 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEP----TDESFKDAIAFA----K-KGQFDAFVAVGG-G 90 (414)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6777777654321 2245666777754331 22 12222222 113334444332 2 245789999999 6
Q ss_pred hHHHHHHHHH---hhh---------------ccCCCCCCcEEEecC--CCCcccccc
Q 011840 159 TVGWVLGSVG---ELN---------------KQGREPVPPVAIIPL--GTGNDLSRS 195 (476)
Q Consensus 159 Tv~~vln~l~---~~~---------------~~~~~~~~plgiIPl--GTgNdfars 195 (476)
++-.+.-.+. ... .......+|+..||. |||-...+.
T Consensus 91 SviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~ 147 (414)
T cd08190 91 SVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGV 147 (414)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccc
Confidence 6665543332 100 000113368999997 676654443
No 102
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=49.73 E-value=75 Score=32.31 Aligned_cols=41 Identities=32% Similarity=0.312 Sum_probs=31.3
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||..-+. .|.+ ...+++--||-=--||+.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~-~L~e------~~~i~vigiPkTIDNDl~ 130 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQ-KLYE------EGGIPVIGLPGTIDNDIP 130 (301)
T ss_pred cCCCEEEEeCCchHHHHHH-HHHH------hhCCCEEeecccccCCCc
Confidence 4568999999999987654 3333 135788889999999987
No 103
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=49.17 E-value=3.9 Score=36.97 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=12.5
Q ss_pred EEEcCChhHHHHHHHH
Q 011840 152 VVAGGDGTVGWVLGSV 167 (476)
Q Consensus 152 vv~GGDGTv~~vln~l 167 (476)
=-.|||||++|+-+.=
T Consensus 129 RgdGGDGT~hW~Yd~Q 144 (180)
T PLN00180 129 RGDGGDGTGHWVYERQ 144 (180)
T ss_pred cccCCCCceeeEeehH
Confidence 3469999999987543
No 104
>PRK10586 putative oxidoreductase; Provisional
Probab=49.02 E-value=1.1e+02 Score=31.70 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+.-+. ........+...|.... +++...... . ....++++++.. ..+.|.||++|| |++
T Consensus 35 ~~~lvv~g~~----~~~~~~~~~~~~l~~~~-~~~~~~~g~--~--~~~~v~~l~~~~------~~~~d~iiavGG-Gs~ 98 (362)
T PRK10586 35 SRAVWIYGER----AIAAAQPYLPPAFELPG-AKHILFRGH--C--SESDVAQLAAAS------GDDRQVVIGVGG-GAL 98 (362)
T ss_pred CeEEEEEChH----HHHHHHHHHHHHHHHcC-CeEEEeCCC--C--CHHHHHHHHHHh------ccCCCEEEEecC-cHH
Confidence 5677774432 22333455566665532 333211100 0 123445554432 134588999988 777
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecCCCCcc
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPlGTgNd 191 (476)
-.+.-.+... ..+|+-.||.=-+++
T Consensus 99 iD~aK~~a~~------~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 99 LDTAKALARR------LGLPFVAIPTIAATC 123 (362)
T ss_pred HHHHHHHHhh------cCCCEEEEeCCcccc
Confidence 7777777642 468999999844433
No 105
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=47.74 E-value=55 Score=35.33 Aligned_cols=51 Identities=33% Similarity=0.416 Sum_probs=34.9
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc---cccCC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa---rslg~ 198 (476)
.+-+.++++|||||..-+..--..... +..++++--||-==-||+. +++|.
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~--~g~~I~VIGIPKTIDNDI~~td~S~GF 228 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRR--RKLNISVVGIPKTIDNDIPIIDESFGF 228 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCCCcccCcCc
Confidence 356799999999999855432221111 1245788889998999987 56665
No 106
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=46.52 E-value=5.8 Score=36.95 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=29.3
Q ss_pred hheehhhhcCCce-eeecccccccccccccchhhh
Q 011840 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (476)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~ 48 (476)
..++...+-|..| |||..|-+|+-.++.+||...
T Consensus 96 ~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 96 DFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 3456778888777 999999999999999999875
No 107
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=45.64 E-value=6.3 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=27.5
Q ss_pred heehhhhcCCce-eeecccccccccccccchhhh
Q 011840 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (476)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~ 48 (476)
.++..+..|..+ |||..|..|+-.++.+||...
T Consensus 70 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 70 FIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 345666778888 999999999999999998764
No 108
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=44.10 E-value=1.1e+02 Score=31.38 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=31.9
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||+.-+. .|.+ ...++--||-==-||+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~-~L~e-------~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAM-RLTE-------HGFPCVGLPGTIDNDIP 130 (317)
T ss_pred cCCCEEEEECCchHHHHHH-HHHH-------cCCCEEEecccccCCCC
Confidence 4568999999999987664 3443 35889999998999987
No 109
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=42.17 E-value=14 Score=32.76 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=11.1
Q ss_pred cceEEEEcCChhHH
Q 011840 148 KMRIVVAGGDGTVG 161 (476)
Q Consensus 148 ~~~Ivv~GGDGTv~ 161 (476)
..|+|+||||||-+
T Consensus 85 gQRlIvsGGegtss 98 (160)
T PF12219_consen 85 GQRLIVSGGEGTSS 98 (160)
T ss_dssp G-EEEEESSSSSSG
T ss_pred ccEEEEeCCCCccc
Confidence 45999999999954
No 110
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=41.66 E-value=1.7e+02 Score=32.30 Aligned_cols=43 Identities=23% Similarity=0.051 Sum_probs=30.9
Q ss_pred CcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecC--CCCccccc
Q 011840 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPl--GTgNdfar 194 (476)
..+.||++|| |++..++..+...- ...+|+-.||. -..+|-+-
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i~vPTTllA~vDss~ 313 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAATW----MRGIRYVNCPTSLLAMVDAST 313 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEEEeCChHHhhhcccc
Confidence 5788998988 99999998886421 14789999998 34444443
No 111
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=40.88 E-value=1.4e+02 Score=27.36 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccCc-ceEEEEcCChhHHHHHHHHHhhhccC
Q 011840 97 PELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTVGWVLGSVGELNKQG 174 (476)
Q Consensus 97 ~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~-~~Ivv~GGDGTv~~vln~l~~~~~~~ 174 (476)
....++....|....+ ||+.+...+ +.+..+.++++++. .++. -.|.++|+.+-+.-|+.++..
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaH----Rtp~~~~~~~~~a~-----~~g~~viIa~AG~aa~Lpgvva~~t~----- 76 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAH----RTPELMLEYAKEAE-----ERGIKVIIAGAGGAAHLPGMVAALTP----- 76 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcc----cCHHHHHHHHHHHH-----HCCCeEEEEeCCccchhHHHHHhccC-----
Confidence 3466667777765543 888776543 35667788877654 1233 356677888888888887753
Q ss_pred CCCCCcEEEecCCCC
Q 011840 175 REPVPPVAIIPLGTG 189 (476)
Q Consensus 175 ~~~~~plgiIPlGTg 189 (476)
.|+=-+|.-++
T Consensus 77 ----~PVIgvP~~~~ 87 (156)
T TIGR01162 77 ----LPVIGVPVPSK 87 (156)
T ss_pred ----CCEEEecCCcc
Confidence 44544565443
No 112
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=40.11 E-value=88 Score=32.30 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC---
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG--- 156 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG--- 156 (476)
.+++++.+--.|=++. .+.+++...|+..+++++.-+.|.+.++.- ..+-++++ .++-+-|+++||
T Consensus 29 ~~kVLi~YGGGSIKrn--GvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv-~kaV~i~k--------ee~idflLAVGGGSV 97 (384)
T COG1979 29 DAKVLIVYGGGSIKKN--GVYDQVVEALKGIEVIEFGGVEPNPRLETL-MKAVEICK--------EENIDFLLAVGGGSV 97 (384)
T ss_pred cCeEEEEecCcccccc--chHHHHHHHhcCceEEEecCCCCCchHHHH-HHHHHHHH--------HcCceEEEEecCcch
Confidence 3889998865444444 377888888887777888878887643221 22333433 256788999999
Q ss_pred -ChhHHHHHHHHHh
Q 011840 157 -DGTVGWVLGSVGE 169 (476)
Q Consensus 157 -DGTv~~vln~l~~ 169 (476)
|||=--.+.+..+
T Consensus 98 iD~tK~IAa~a~y~ 111 (384)
T COG1979 98 IDGTKFIAAAAKYD 111 (384)
T ss_pred hhhHHHHHhhcccC
Confidence 7776555554443
No 113
>PRK03202 6-phosphofructokinase; Provisional
Probab=39.97 E-value=1.2e+02 Score=31.08 Aligned_cols=40 Identities=30% Similarity=0.286 Sum_probs=31.5
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||+.-+.. |.+ ..+++--||-==-||+.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~-L~e-------~~i~vigiPkTIDNDl~ 131 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKR-LTE-------HGIPVIGLPGTIDNDIA 131 (320)
T ss_pred cCCCEEEEeCChHHHHHHHH-HHh-------cCCcEEEecccccCCCC
Confidence 45689999999999987543 443 36788889988899987
No 114
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=39.83 E-value=1.4e+02 Score=30.76 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=33.2
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc---cccCC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa---rslg~ 198 (476)
.+-+.+|++|||||+.-+ +.|.+ ..+++--||-==-||+. .++|.
T Consensus 93 ~~Id~LivIGGdgS~~~a-~~L~~-------~gi~vigiPkTIDNDl~gtd~tiGf 140 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIA-RRLAD-------KGLPVVGVPKTIDNDLEATDYTFGF 140 (324)
T ss_pred cCCCEEEEECCchHHHHH-HHHHh-------cCCCEEeeccccCCCCcCCccCcCH
Confidence 456799999999999654 34543 34788889988899997 34554
No 115
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=39.54 E-value=1.3e+02 Score=31.09 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=31.2
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||+.-+..--..... ....+++--||-=--||+.
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHh--cCCCccEEEeeecccCCCc
Confidence 456799999999999765432211111 1246889999976689987
No 116
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=38.71 E-value=1.4e+02 Score=34.99 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhh--hcCeeEEe---eecCcceeecchhHHHHHHhcchhhhhcccCcceEEEE
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMG--KEQVFDLS---EVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~--~~~v~dl~---~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~ 154 (476)
.++++|+..+..-. ...++++...|. .. .+++. ...|.. .....+++++.+. ..+.|.||++
T Consensus 480 ~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~-~i~~~~~~~v~~np----~~~~v~~~~~~~~-----~~~~D~IIai 546 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LGYVDKVTDVLKKREN-GVEYEVFSEVEPDP----TLSTVRKGAELMR-----SFKPDTIIAL 546 (862)
T ss_pred CCEEEEEECcchhh---cchHHHHHHHHhcccC-CCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 47888887654321 125667777776 22 22222 223332 1233444444332 2456899999
Q ss_pred cCChhHHHHHHHH
Q 011840 155 GGDGTVGWVLGSV 167 (476)
Q Consensus 155 GGDGTv~~vln~l 167 (476)
|| |++-.+.-.+
T Consensus 547 GG-GSviD~AK~i 558 (862)
T PRK13805 547 GG-GSPMDAAKIM 558 (862)
T ss_pred CC-chHHHHHHHH
Confidence 98 7777666555
No 117
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=38.49 E-value=1.8e+02 Score=30.01 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChhH
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGTv 160 (476)
++++|+..+.-.. -..+.+.+.|.....+-+....+.+ ....+.++.+++.+. .....+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~~----l~~~~l~~~L~~~~~~~~~~~e~~k----~l~~v~~~~~~~~~~--~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVAE----LYRDRLDLPLDAAPVIAIDATEENK----SLEAVSSVIESLRQN--GARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHHH----HHHHHHHHHhcCCeEEEeCCCCCCC----CHHHHHHHHHHHHHc--CCCCCcEEEEECC-hHH
Confidence 6788888775532 2566677766432222222222222 223444444333210 1234478888888 888
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 161 GWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 161 ~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
..++..+...- ....++-.||.
T Consensus 89 ~D~ak~vA~~~----~rgi~~i~iPT 110 (346)
T cd08196 89 QDVTTFVASIY----MRGVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHHH----HcCCCeEEecc
Confidence 88887775321 13456766775
No 118
>PLN02564 6-phosphofructokinase
Probab=35.22 E-value=1.6e+02 Score=32.02 Aligned_cols=46 Identities=30% Similarity=0.330 Sum_probs=30.2
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||..-+..-...... ...++++--||-==-||+.
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~--~g~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRR--RGLKVAVAGIPKTIDNDIP 220 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEEecccccCCCc
Confidence 356799999999999765432221111 0234557778888899987
No 119
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=34.72 E-value=13 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=26.0
Q ss_pred eehhhhcCCce-eeecccccccccccccchhhh
Q 011840 17 IDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (476)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~ 48 (476)
++..+..|..+ |||..|..|+..++.+|+...
T Consensus 74 i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 74 IDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred HHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 34555567778 899999999999999998864
No 120
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=34.49 E-value=1.6e+02 Score=34.00 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.8
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||..-+. .|.+....-....+|+-.||.==-||+.
T Consensus 477 ~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred cCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 4568999999999998665 3332111001246899999999999986
No 121
>PRK06756 flavodoxin; Provisional
Probab=33.65 E-value=1.7e+02 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHhhhhc
Q 011840 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE 110 (476)
Q Consensus 80 ~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~ 110 (476)
+++++||+=+. .|+.+++.+.+.+.|...
T Consensus 1 mmkv~IiY~S~--tGnTe~vA~~ia~~l~~~ 29 (148)
T PRK06756 1 MSKLVMIFASM--SGNTEEMADHIAGVIRET 29 (148)
T ss_pred CceEEEEEECC--CchHHHHHHHHHHHHhhc
Confidence 35788888554 456778889998888654
No 122
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=32.94 E-value=1.7e+02 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.084 Sum_probs=31.3
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||..-+..--..... ....+++--||-==-||+.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~--~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAE--NGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHH--hCCCceEEEeeeeeeCCCC
Confidence 456799999999998765432111110 0136888889988899986
No 123
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=30.70 E-value=21 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=28.9
Q ss_pred heehhhhcCCce-eeecccccccccccccchhhh
Q 011840 16 MIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (476)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~ 48 (476)
.|++.-.-|..+ |||--||.|+..+...||...
T Consensus 101 Fi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 101 FIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred HHHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 456777889999 999999999999999999864
No 124
>PRK14071 6-phosphofructokinase; Provisional
Probab=29.93 E-value=2.1e+02 Score=29.86 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=33.0
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc---cccCC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa---rslg~ 198 (476)
.+-+.++++|||||.. .+..|.+ ...+++--||-==-||+. +++|.
T Consensus 106 ~~Id~Li~IGGdgS~~-~a~~L~~------~~~i~vIgiPkTIDNDl~~td~t~Gf 154 (360)
T PRK14071 106 LGLDALIGIGGDGSLA-ILRRLAQ------QGGINLVGIPKTIDNDVGATEVSIGF 154 (360)
T ss_pred cCCCEEEEECChhHHH-HHHHHHH------hcCCcEEEecccccCCCcCcccCcCh
Confidence 4568999999999986 3444543 126788889987799986 34554
No 125
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.70 E-value=2.3e+02 Score=30.45 Aligned_cols=51 Identities=31% Similarity=0.430 Sum_probs=33.6
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc---cccCC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa---rslg~ 198 (476)
.+-+.++++|||||..-+..--..... +...+++--||-==-||+. +++|.
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~--~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIER--RGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCcCcccCCCH
Confidence 356789999999999765432211110 1245788888988899986 45554
No 126
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=28.39 E-value=4.2e+02 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=23.2
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
++.+.++++.||-++......+...-.. .....++=+||-
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~-~~~~~~veivPG 130 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQE-LYPQVAIQTIPG 130 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHh-cCCCCCEEEECC
Confidence 3567899999996665444433221000 013567888884
No 127
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=28.20 E-value=4.3e+02 Score=27.66 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEE-eeecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcC
Q 011840 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (476)
Q Consensus 78 ~~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl-~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG 156 (476)
....+++|+.|+.=. +-..+++...|.... ++. ...-|.-..+.......++-.+..+ ......+.||+.||
T Consensus 31 ~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g-~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~--~~~~R~s~iialGG 103 (360)
T COG0337 31 LAGRKVAIVTDETVA----PLYLEKLLATLEAAG-VEVDSIVLPDGEEYKSLETLEKIYDALLE--AGLDRKSTLIALGG 103 (360)
T ss_pred ccCCeEEEEECchhH----HHHHHHHHHHHHhcC-CeeeEEEeCCCcccccHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 344589999997644 235667777776653 332 2222222223334444444333221 12345678888888
Q ss_pred ChhHHHHHHHHHhhhccCCCCCCcEEEecC
Q 011840 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~~~~~~~plgiIPl 186 (476)
|+|+.++.=....- -..+++--||.
T Consensus 104 -GvigDlaGF~Aaty----~RGv~fiqiPT 128 (360)
T COG0337 104 -GVIGDLAGFAAATY----MRGVRFIQIPT 128 (360)
T ss_pred -hHHHHHHHHHHHHH----HcCCCeEeccc
Confidence 99988876554432 14566666664
No 128
>PRK14072 6-phosphofructokinase; Provisional
Probab=27.09 E-value=2.6e+02 Score=29.83 Aligned_cols=46 Identities=24% Similarity=0.223 Sum_probs=30.8
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.+|++|||||+.-+.. |.+.-.. ...++++--||-==-||+.
T Consensus 102 ~~Id~LivIGGdgS~~~a~~-L~e~~~~-~g~~i~vIgIPkTIDNDl~ 147 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALK-VSQLAKK-MGYPIRCIGIPKTIDNDLP 147 (416)
T ss_pred cCCCEEEEECChHHHHHHHH-HHHHHHH-hCCCceEEEeeecccCCCC
Confidence 45689999999999976542 2221000 0235788888876799988
No 129
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=26.71 E-value=2.8e+02 Score=29.04 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCCCChhHHHHHHHHhhhhcCeeEEee-ecCcceeecchhHHHHHHhcchhhhhcccCcceEEEEcCChh
Q 011840 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (476)
Q Consensus 81 ~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v~dl~~-~~p~~~~t~~~~~~~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (476)
++.+|+.-+.+ ..-..+++...|+..+ |.... ..++ -...+.+++++.+. ..+.+.||.+|| |+
T Consensus 31 ~~~lvv~g~~~----~~~~~~~~~~~l~~~g-~~~~~~~~~~----a~~~ev~~~~~~~~-----~~~~d~vIGVGG-Gk 95 (360)
T COG0371 31 SRALVVTGENT----YAIAGEKVEKSLKDEG-LVVHVVFVGE----ASEEEVERLAAEAG-----EDGADVVIGVGG-GK 95 (360)
T ss_pred CceEEEEChhH----HHHHHHHHHHHhcccC-cceeeeecCc----cCHHHHHHHHHHhc-----ccCCCEEEEecC-cH
Confidence 56666654332 2344566777776653 22221 1111 12244555554432 135689999999 88
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 160 v~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
+-.++-.+... .+.|+-++|.=..+|=.
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPTIASTDAI 123 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecCccccccc
Confidence 88888877653 57899999998877733
No 130
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=24.17 E-value=3e+02 Score=31.82 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=30.6
Q ss_pred cCcceEEEEcCChhHHHHH----------HHHHhhhcc-----CCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVL----------GSVGELNKQ-----GREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vl----------n~l~~~~~~-----~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.+|++|||||+.-+. ..|.+.... ......++--||-==-||++
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 4668999999999987543 222221100 01235677778877799998
No 131
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=23.67 E-value=24 Score=34.62 Aligned_cols=30 Identities=7% Similarity=-0.172 Sum_probs=25.3
Q ss_pred ehhhhcCCce-eeecccccccccccccchhh
Q 011840 18 DSIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (476)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~ 47 (476)
+..+.-|..+ |||.-|.+|+-+++..||..
T Consensus 164 ~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 164 NNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455567777 99999999999999999975
No 132
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=22.99 E-value=32 Score=37.36 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=11.2
Q ss_pred CcceEEEEcCChhHH
Q 011840 147 QKMRIVVAGGDGTVG 161 (476)
Q Consensus 147 ~~~~Ivv~GGDGTv~ 161 (476)
+....+.+|-||+|.
T Consensus 464 kdKy~~lagndg~v~ 478 (498)
T PLN02499 464 KDKYRVLAGNDGTVS 478 (498)
T ss_pred HHHHHHhcCCCcccc
Confidence 344677889999883
No 133
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=22.91 E-value=2.8e+02 Score=32.00 Aligned_cols=70 Identities=23% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHhcchhhhhcccCcceEEEEcCChhHHHHH---------------------HHHHhhhccCCCCCCcEEEecCCCCc
Q 011840 132 EKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVL---------------------GSVGELNKQGREPVPPVAIIPLGTGN 190 (476)
Q Consensus 132 ~~la~~~~~~a~~~~~~~~Ivv~GGDGTv~~vl---------------------n~l~~~~~~~~~~~~plgiIPlGTgN 190 (476)
.+.++... ..+-+.+|++|||||+.-+. ..... ....++--||-==-|
T Consensus 84 ~~~~~~L~-----~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~------~~~l~vvGiPkTIDN 152 (745)
T TIGR02478 84 LKAARNLI-----KRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEE------HRHLTIVGLVGSIDN 152 (745)
T ss_pred HHHHHHHH-----HhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhc------CCCCcEEEEcccccc
Q ss_pred ccccccCCCCCCCCcHHHHHHHHHHHH
Q 011840 191 DLSRSFGWGGSFPFAWKSAVKRTLQRA 217 (476)
Q Consensus 191 dfarslg~g~~~p~~~~~al~~~l~~i 217 (476)
|++ +.++......|++.+.+.+
T Consensus 153 Dl~-----gTd~TiGfdTA~~~i~~ai 174 (745)
T TIGR02478 153 DMC-----GTDMTIGADSALHRICEAI 174 (745)
T ss_pred CCC-----CCcCCCCHHHHHHHHHHHH
No 134
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.84 E-value=1.1e+02 Score=28.57 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=30.1
Q ss_pred chhHHHHHHhcchhhhhcccCcceEEEEcC--ChhHHHHHHHHHhhhccCCCCCCcEEEecCC
Q 011840 127 GLACLEKLAELGDFCAKDTRQKMRIVVAGG--DGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (476)
Q Consensus 127 ~~~~~~~la~~~~~~a~~~~~~~~Ivv~GG--DGTv~~vln~l~~~~~~~~~~~~plgiIPlG 187 (476)
+...+++|++.. .+....+|.|| .|....+..+..+. ....+||+|-.
T Consensus 17 ~~~~A~~lG~~l-------a~~g~~lV~GGg~~GlM~a~a~ga~~~------gG~viGi~p~~ 66 (178)
T TIGR00730 17 YKELAAELGAYL-------AGQGWGLVYGGGRVGLMGAIADAAMEN------GGTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHH-------HHCCCEEEECCChHhHHHHHHHHHHhc------CCeEEEecchh
Confidence 334455555443 23445556655 68888888888763 45679999854
No 135
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.20 E-value=5.3e+02 Score=28.66 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCceEEEEEcCCCCCCChhHHHHHHHHhhhhcCe-eEEeeecCcceeecchhHHHHHHhcchhhhhcccC-cceEEEEcC
Q 011840 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAGG 156 (476)
Q Consensus 79 ~~~~~lvivNP~SG~~~~~~~~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~~~~la~~~~~~a~~~~~-~~~Ivv~GG 156 (476)
+...+.||.=..|- ....++....|....+ |++.+...+ +.+..+.++++++. .++ .-.|.++|+
T Consensus 409 ~~~~v~i~~gs~sd----~~~~~~~~~~l~~~g~~~~~~v~sah----r~~~~~~~~~~~~~-----~~~~~v~i~~ag~ 475 (577)
T PLN02948 409 GTPLVGIIMGSDSD----LPTMKDAAEILDSFGVPYEVTIVSAH----RTPERMFSYARSAH-----SRGLQVIIAGAGG 475 (577)
T ss_pred CCCeEEEEECchhh----HHHHHHHHHHHHHcCCCeEEEEECCc----cCHHHHHHHHHHHH-----HCCCCEEEEEcCc
Confidence 34446666644443 3466666667766553 777766544 35667777777654 123 346778899
Q ss_pred ChhHHHHHHHHHhhhccCCCCCCcEEEecCCCC
Q 011840 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (476)
Q Consensus 157 DGTv~~vln~l~~~~~~~~~~~~plgiIPlGTg 189 (476)
.+.+.-|+.++.. .|+==+|..++
T Consensus 476 ~~~l~~~~a~~t~---------~pvi~vp~~~~ 499 (577)
T PLN02948 476 AAHLPGMVASMTP---------LPVIGVPVKTS 499 (577)
T ss_pred cccchHHHhhccC---------CCEEEcCCCCC
Confidence 9999999988753 45555566544
No 136
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.04 E-value=3.9e+02 Score=27.76 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=29.2
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.+|++|||||..-.. -|.+. -..++-=||-==-||++
T Consensus 93 ~gId~LvvIGGDgS~~gA~-~Lae~------~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAA-LLAEE------GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred cCCCEEEEECCCChHHHHH-HHHHh------cCCcEEecCCCccCCCc
Confidence 4568999999999987654 33331 23666667877789988
No 137
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=21.97 E-value=2e+02 Score=25.88 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhhhcCeeEEeeecCcceeecchhHHHHHHhc
Q 011840 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAEL 137 (476)
Q Consensus 96 ~~~~~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~~~~la~~ 137 (476)
|-++.+.+.+.|... +|++....|.. ..|+..+..+++.
T Consensus 11 G~~lK~~l~~~L~~~-g~eV~D~G~~~--~dypd~a~~va~~ 49 (141)
T PRK12613 11 GNALKELIKSFLQEE-GYDIIDVTDIN--SDFIDNTLAVAKA 49 (141)
T ss_pred hHHHHHHHHHHHHHC-CCEEEEcCCCC--CChHHHHHHHHHH
Confidence 356888888888775 47777666532 3455555555543
No 138
>PLN02884 6-phosphofructokinase
Probab=20.95 E-value=3.7e+02 Score=28.67 Aligned_cols=46 Identities=28% Similarity=0.271 Sum_probs=30.9
Q ss_pred cCcceEEEEcCChhHHHHHHHHHhhhccCCCCCCcEEEecCCCCcccc
Q 011840 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (476)
Q Consensus 146 ~~~~~Ivv~GGDGTv~~vln~l~~~~~~~~~~~~plgiIPlGTgNdfa 193 (476)
.+-+.++++|||||..-+..--..... ....+++--||-==-||+.
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~--~g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRK--RKMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEeccccccCCCc
Confidence 456799999999999755432111110 0234788889988899986
No 139
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=20.03 E-value=1.2e+02 Score=29.88 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.2
Q ss_pred CCCCceEEEEEcCCCCCCCh
Q 011840 77 QPPEAPMVVFINSRSGGRHG 96 (476)
Q Consensus 77 ~~~~~~~lvivNP~SG~~~~ 96 (476)
..+..+++|||||.||-+..
T Consensus 27 ~~p~~~f~vIiNP~sGPG~~ 46 (253)
T PF12138_consen 27 AHPSVPFTVIINPNSGPGSA 46 (253)
T ss_pred cCCCCcEEEEEcCCCCCCCC
Confidence 35677899999999998744
Done!