BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011841
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 34/343 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEG 177
T L+TG AGF+GS+ L K V+GLDNF++ + +L + + Q + +EG
Sbjct: 40 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 99
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D ++ V HVLH AA V ++ +P + A+NI GF+N+L K+ Q
Sbjct: 100 DIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E + P S YA TK E A Y YG GLR+
Sbjct: 158 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 215
Query: 298 FTVYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-GCVGA 352
F V+G P+ AY +T +L+G DVY D E +RDF YID+V++ + A
Sbjct: 216 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVY-INGDGETSRDFCYIDNVIQMNILSA 272
Query: 353 LDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---- 408
L A+ +YN+ + L + + LN H+ ++
Sbjct: 273 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL--IHHIDKLSIKYR 318
Query: 409 --RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
R+GDV ++ A+V+ A Y+P + GLR + WYV +
Sbjct: 319 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 361
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 34/343 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEG 177
T L+TG AGF+GS+ L K V+GLDNF++ + +L + + Q + +EG
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D ++ V HVLH AA V ++ +P + A+NI GF+N+L K+ Q
Sbjct: 87 DIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E + P S YA TK E A Y YG GLR+
Sbjct: 145 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 298 FTVYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-GCVGA 352
F V+G P+ AY +T +L+G DVY D E +RDF YID+V++ + A
Sbjct: 203 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVY-INGDGETSRDFCYIDNVIQMNILSA 259
Query: 353 LDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---- 408
L A+ +YN+ + L + + LN H+ ++
Sbjct: 260 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL--IHHIDKLSIKYR 305
Query: 409 --RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
R+GDV ++ A+V+ A Y+P + GLR + WYV +
Sbjct: 306 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 34/343 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEG 177
T L+TG AGF+GS+ L K V+GLDNF++ + +L + + Q + +EG
Sbjct: 21 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 80
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D ++ V HVLH AA V ++ +P + A+NI GF+N+L K+ Q
Sbjct: 81 DIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E + P S YA TK E A Y YG GLR+
Sbjct: 139 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 196
Query: 298 FTVYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-GCVGA 352
F V+G P+ AY +T +L+G DVY D E +RDF YID+V++ + A
Sbjct: 197 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVY-INGDGETSRDFCYIDNVIQMNILSA 253
Query: 353 LDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---- 408
L A+ +YN+ + L + + LN H+ ++
Sbjct: 254 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL--IHHIDKLSIKYR 299
Query: 409 --RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
R+GDV ++ A+V+ A Y+P + GLR + WYV +
Sbjct: 300 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 342
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 165/343 (48%), Gaps = 34/343 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEG 177
T L+TG AGF+GS+ L K V+GLDNF++ + +L + + Q + +EG
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D ++ V HVLH AA V ++ +P + A+NI GF+N+L K+ Q
Sbjct: 87 DIRDLTTCEQVMKGVD--HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E + P S YA TK E A Y YG GLR+
Sbjct: 145 -SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 298 FTVYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-GCVGA 352
F V+G P+ AY +T +L+G DVY D E +RDF YID+V++ + A
Sbjct: 203 FNVFGRRQDPNGAYAAVIPKWTAAMLKGD--DVY-INGDGETSRDFCYIDNVIQMNILSA 259
Query: 353 LDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---- 408
L A+ +YN+ + L + + LN H+ ++
Sbjct: 260 L------------AKDSAKDNIYNVAVGDRTTLNELSGYIYDELNL--IHHIDKLSIKYR 305
Query: 409 --RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
R+GDV + A+V+ A Y+P + GLR + WYV +
Sbjct: 306 EFRSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRF 348
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 164/338 (48%), Gaps = 28/338 (8%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDL 179
L+TG AGF+GS+ L K V+GLDNF + + +L R + +K ++GD+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ V + VLH AA V ++ +P + A+NI GF+N+L + Q S
Sbjct: 91 RNLDDCNNACAGVDY--VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-S 147
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+A+SSS YG + +P E +P S YA TK E A ++ YG + GLR+F
Sbjct: 148 FTYAASSSTYGDHPGLPKVED-TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 206
Query: 300 VYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
V+G P+ AY +T ++QG DVY D E +RDF YI++ V+ + A
Sbjct: 207 VFGRRQDPNGAYAAVIPKWTSSMIQGD--DVY-INGDGETSRDFCYIENTVQANLLAATA 263
Query: 356 AXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA----KKHVIRMPRNG 411
A+ +VYN+ + +L L + L ++ V R R G
Sbjct: 264 G-----------LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREG 312
Query: 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
DV ++ A++S A K GY P D++AG+ + WY+ +
Sbjct: 313 DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 159/353 (45%), Gaps = 49/353 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD------PSLKRARQKLLQKHQVFI 174
VLVTG AG++GSH L L + G + +DNF++ + SL+R ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+ K+
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-------TYNHI 287
+ ++V++SS++VYG +P E+H T + Y +K EE+ T+N +
Sbjct: 123 GVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAV 181
Query: 288 YGLALTGLRFFTVYG----------PWGRPDMAYFFFTK-DILQGKTIDV----YKTQDD 332
LR+F G P G P+ + ++ I + + ++V Y T+D
Sbjct: 182 L------LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG 235
Query: 333 REVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSIL 392
V RD+ ++ D+ KG + AL R+YNLG + V ++V +
Sbjct: 236 TGV-RDYIHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAM 284
Query: 393 ENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
E K V+ R GDV +AN SLA ++ G+ L +W
Sbjct: 285 EKASGKKIPYKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 41/349 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD------PSLKRARQKLLQKHQVFI 174
VLVTG AG++GSH L L + G + +DNF++ + SL+R ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+ K+
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY---NHIYGLA 291
+ ++V++SS++VYG +P E+H T + Y +K EE+ + + +
Sbjct: 123 GVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVV 181
Query: 292 LTGLRFFTVYG----------PWGRPDMAYFFFTK-DILQGKTIDV----YKTQDDREVA 336
L LR+F G P G P+ + ++ I + + ++V Y T+D V
Sbjct: 182 L--LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV- 238
Query: 337 RDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RD+ ++ D+ KG + AL R+YNLG + V ++V +E
Sbjct: 239 RDYIHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKAS 288
Query: 397 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V+ R GDV +AN SLA ++ G+ L +W
Sbjct: 289 GKKIPYKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 159/349 (45%), Gaps = 41/349 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD------PSLKRARQKLLQKHQVFI 174
VLVTG AG++GSH L L + G + +DNF++ + SL+R ++ L V
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEF 62
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
E D+ D L +LF F V+H A + ++Q P Y N+ G + LLE+ K+
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY---NHIYGLA 291
+ ++V++SS++VYG +P E+H T + Y +K EE+ + + +
Sbjct: 123 GVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVV 181
Query: 292 LTGLRFFTVYG----------PWGRPDMAYFFFTK-DILQGKTIDV----YKTQDDREVA 336
L LR+F G P G P+ + ++ I + + ++V Y T+D V
Sbjct: 182 L--LRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV- 238
Query: 337 RDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RD+ ++ D+ KG + AL R+YNLG + V ++V +E
Sbjct: 239 RDYIHVVDLAKGHIAAL----------RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKAS 288
Query: 397 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V+ R GDV +AN SLA ++ G+ L +W
Sbjct: 289 GKKIPYKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 149/346 (43%), Gaps = 41/346 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQKLLQKHQVFIVEGDL 179
+L+TG AGF+G H + AL G+ V LD+ P + K L+K + + E DL
Sbjct: 10 ILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+D L V HLA+ V + + P Y+ N+ +LL +C SV P
Sbjct: 68 SDVRL------------VYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVG-VPK 113
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL-RFF 298
+V S+ VYG +P E P S YAA+K E +A + G+ RFF
Sbjct: 114 VVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXX 358
VYGP RPD ++L + V + D E RDFTYI DVV V +
Sbjct: 173 NVYGPGERPDALVPRLCANLLTRNELPV---EGDGEQRRDFTYITDVVDKLVALANRPLP 229
Query: 359 XXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 418
V N G+ + V ++ IL+ + A + + PR ++ A
Sbjct: 230 S--------------VVNFGSGQSLSVNDVIRILQA--TSPAAEVARKQPRPNEITEFRA 273
Query: 419 NVSLAYKDFGYKP-TTDLAAGLRKFVKWYVS--YYGIQPRVKKENG 461
+ +L + G + + G+R ++W+ S I+ R+ +E G
Sbjct: 274 DTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLDDIRQRIFQEEG 319
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++SS++VYG N ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++SS++VYG N ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S+++VYG N ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 113/240 (47%), Gaps = 14/240 (5%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG AGF+GSH L RG V LDN + R+ + + F V D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLAT-------GKRENVPKGVPFFRV--D 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D + + F THV H AAQA V+ ++++P N+ G +NLLE C+ +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+ ++ ++YG + +E +P S YAA+K A E Y YGL LR+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 299 TVYGPWGRPD---MAYFFFTKDILQGKTIDVY--KTQDDREVARDFTYIDDVVKGCVGAL 353
VYGP P F + +L+G + +Y KT D RD+ Y+ DV + AL
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S+++VYG N ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 40/332 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS----YYDPSLKRARQKLLQKHQVFI 174
M ++VTG AGF+GSH L + G V+ +DN +S + +PS + + L
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAG 60
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
++GD+ V H AA VR + P + N+ N+LE +
Sbjct: 61 IKGDV-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT 103
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
+ ++V+ASSS+VYG +P E +P S+Y A K AGE + TY ++G+
Sbjct: 104 GVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLA 161
Query: 295 LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
+R+ V GP R + Y F K ++V R + + Y+ D V+ + A
Sbjct: 162 VRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQR---KSYLYVRDAVEATLAAWK 218
Query: 355 TAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---- 410
A N+GN V V + I+ +L + + ++ +
Sbjct: 219 K---------FEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGW 269
Query: 411 -GDVPYTHANVSLAYKDFGYKPTTDLAAGLRK 441
GDV Y V+ K G++PT A ++K
Sbjct: 270 PGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKK 301
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S ++VYG N ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++SS++VYG ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S+++VYG N ++P+ ES T P S + +K E+I + +AL
Sbjct: 118 -NFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 37/334 (11%)
Query: 120 TVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQ----KLLQKHQVF 173
T+L+TG AGFVGS+ + ++ V+ LD F S S R K L +
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
++ D+N+ PL + + + F ++ H AA + M N + + +N F+NLLE+ +S
Sbjct: 72 VIAADINN-PLDLRRLEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARS 128
Query: 234 VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLA 291
+ +++ASS+ VYG NT+ P + + + P ++Y +K +E ++H+ +++
Sbjct: 129 --KKAKVIYASSAGVYG-NTKAP-NVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQ--- 181
Query: 292 LTGLRFFTVYGP--WGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349
GLR+F VYGP + + A + L K + E RDF YI+DV++
Sbjct: 182 -VGLRYFNVYGPREFYKEKTASMVL-QLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQAN 239
Query: 350 VGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR 409
V A+ VYN+G + +VSIL+ L K I+ P
Sbjct: 240 VKAMKAQKSG--------------VYNVGYSQARSYNEIVSILKEHLGD-FKVTYIKNPY 284
Query: 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 443
+T A++ D Y P DL +G++ ++
Sbjct: 285 AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYL 318
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S+++VYG ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++SS++VYG ++P+ ES T P S + +K E+I + +AL
Sbjct: 118 -NFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR--SVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+ +++S+++VYG ++P+ ES T P S + +K E+I + +AL
Sbjct: 118 -NFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARD 338
LR+F G P G P+ + + + G+ + Y T+D V RD
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQ-VAVGRRDSLAIFGNDYPTEDGTGV-RD 232
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ ++ D+ G V A++ + +YNLG VG V + N +
Sbjct: 233 YIHVMDLADGHVVAMEKLANK----------PGVHIYNLG----AGVGNSVLDVVNAFSK 278
Query: 399 KAKKHV---IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
K V R GD+P A+ S A ++ ++ T L + W
Sbjct: 279 ACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 32/335 (9%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
M +LVTG GF+GS+ L+K D V+ +D +P+ + L + V+
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA---NLKDLEDDPRYTFVK 60
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D L+ +L V V+HLAA++ V ++ +P+ ++ SN+ G LLE + NP
Sbjct: 61 GDVADYELVKEL--VRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP 118
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ V S+ VYG + F+E+ R P+S Y+ATK A + + + Y L + R
Sbjct: 119 EVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
YGP+ P+ K I++ G I +Y T + RD+ Y++D V+ L
Sbjct: 178 CTNNYGPYQFPEK---LIPKTIIRASLGLKIPIYGTGKN---VRDWLYVEDHVRAIELVL 231
Query: 354 DTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG-D 412
+YN+ +V I+ L+ + + R G D
Sbjct: 232 LKGESR-------------EIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHD 278
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV 447
+ Y+ + + +D ++P G++K + WY+
Sbjct: 279 LRYSLDSWKIT-RDLKWRPKYTFDEGIKKTIDWYL 312
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 143/336 (42%), Gaps = 33/336 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG------DGVLGLDNFNSYYDPSLKRARQKLLQKH-Q 171
M +LVTG AGF+GSH L D V+ LD+ + RA + +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY----AGNRANLAPVDADPR 56
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+ V GD+ DA LL + ++ ++H AA++ V ++ + +N+ G LL+ C
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+V S++ VYG ++ES +P S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
+ R YGP+ P+ F ++L G T+ +Y D R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG---DGANVREWVHTDDHCRGIAL 229
Query: 352 ALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
L +Y++G + L IL + L R G
Sbjct: 230 VLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 412 -DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
D+ Y+ + ++ GY+P A GL + V+WY
Sbjct: 277 HDLRYSLDGGKIE-RELGYRPQVSFADGLARTVRWY 311
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 33/336 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG------DGVLGLDNFNSYYDPSLKRARQKLLQKH-Q 171
M +LVTG AGF+GSH L D V+ LD+ + RA + +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY----AGNRANLAPVDADPR 56
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+ V GD+ DA LL + ++ ++H AA++ V ++ + +N+ G LL+ C
Sbjct: 57 LRFVHGDIRDAGLLAR--ELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-C 113
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+V S+ VYG ++ES +P S YAA+K + +A Y+ YGL
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSPL-EPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
+ R YGP+ P+ F ++L G T+ +Y D R++ + DD +G
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG---DGANVREWVHTDDHCRGIAL 229
Query: 352 ALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
L +Y++G + L IL + L R G
Sbjct: 230 VLAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 412 -DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
D+ Y+ + ++ GY+P A GL + V+WY
Sbjct: 277 HDLRYSLDGGKIE-RELGYRPQVSFADGLARTVRWY 311
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 36/328 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M ++VTG AGF+GSH L + G V+ +D S + + L ++GD
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKGD 60
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ V H AA VR + P + N+ N+LE + +
Sbjct: 61 V-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
++V+ASSS+VYG +P E +P S+Y A K AGE + TY ++G+ +R+
Sbjct: 103 TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXX 358
V GP R + Y F K + +V + D + + Y+ D V+ + A
Sbjct: 162 NVVGPRLRHGVIYDFIMK---LRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK---- 214
Query: 359 XXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN-----GDV 413
A N+GN V V + I+ +L + + ++ + GDV
Sbjct: 215 -----KFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDV 269
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRK 441
Y V+ K G++PT A ++K
Sbjct: 270 KYMTLAVTKLMKLTGWRPTMTSAEAVKK 297
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 139/332 (41%), Gaps = 37/332 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG AGFVGSH + L G V +DNF + KR + + ++ D+
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDVV 63
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ PL ++ + HLA+ A M NP + +N G +N+L + K V + +
Sbjct: 64 E-PLYIEV------DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 114
Query: 241 VWASSSSVYGLNTQVPFSESH----RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ AS+S VYG P SE + P + Y K+ E + + Y G+ + R
Sbjct: 115 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 174
Query: 297 FFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
F +GP + F LQG+ + VY + R F Y+ D+V G V ++
Sbjct: 175 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ---TRAFQYVSDLVNGLVALMN 231
Query: 355 TAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 414
+ NLGN + +++NL+ + ++ + ++ D
Sbjct: 232 SNVSSPV--------------NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQ 276
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
++ A G++P L GL K + ++
Sbjct: 277 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 308
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 24/335 (7%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-YDPSLKRARQKLLQKH-QV 172
+ N +LVTG AGF+GS+ + + + NF++ Y +L + +Q H
Sbjct: 21 QSNAXNILVTGGAGFIGSNF-VHYXLQSYETYKIINFDALTYSGNLNNVKS--IQDHPNY 77
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
+ V+G++ + LL + +++ AA++ V +++NP + +N+ G V LLE+ K
Sbjct: 78 YFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVK 137
Query: 233 SVNPQPSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
P +V S+ VYG L F+E P S Y+++K + + IA Y Y L
Sbjct: 138 KY-PHIKLVQVSTDEVYGSLGKTGRFTEETPL-APNSPYSSSKASADXIALAYYKTYQLP 195
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
+ R YGP+ P+ + L+GK + +Y D RD+ ++ D C
Sbjct: 196 VIVTRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLY---GDGLNVRDWLHVTD---HC-S 248
Query: 352 ALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
A+D VYN+G + +V + LL K R G
Sbjct: 249 AIDVVLHKGRVG---------EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLG 299
Query: 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
N +F ++P GL++ V+WY
Sbjct: 300 HDRRYAINAEKXKNEFDWEPKYTFEQGLQETVQWY 334
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 150/355 (42%), Gaps = 51/355 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VLVTG AG++GSH + L + G + DN NS YD AR ++L KH + E DL
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV---ARLEVLTKHHIPFYEVDL 70
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L K+F V+H A V + Q P Y +NI G V LLE+ + N
Sbjct: 71 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-K 129
Query: 240 IVWASSSSVYGLNTQ----VPFSESHRTDQPASLYAATKKAGEEIAHT-YN---HIYGLA 291
V++SS++VYG T+ +P E P + Y TK A E I + YN + A
Sbjct: 130 FVFSSSATVYGDATRFPNMIPIPEECPLG-PTNPYGHTKYAIENILNDLYNSDKKSWKFA 188
Query: 292 LTGLRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV-----A 336
+ LR+F G P G P+ + + + G+ +Y DD +
Sbjct: 189 I--LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQ-VAVGRREKLYIFGDDYDSRDGTPI 245
Query: 337 RDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RD+ ++ D+ KG + AL R +NLG+ G+ ++ E +
Sbjct: 246 RDYIHVVDLAKGHIAALQ------YLEAYNENEGLCREWNLGS------GKGSTVFE-VY 292
Query: 397 NTKAKKHVIRMP------RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
+ K I +P R GDV A A ++ ++ + + KW
Sbjct: 293 HAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKW 347
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 34/326 (10%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
++VTG AGF+GSH L + + V+ +DN +S + + A + +V+ DL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVV-IDNLSSGNEEFVNEAAR---------LVKADLA 53
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ L V H+AA VR +NP +N+ LLE + I
Sbjct: 54 ADDIKDYLKGA---EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RI 109
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ S+S+VYG +P E + T P SLY A+K A E + +Y H + + RF V
Sbjct: 110 VFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXX 360
G + Y F K + +++ E + + YI D V + L
Sbjct: 169 IGRRSTHGVIYDFIMKLKRNPEELEILGNG---EQNKSYIYISDCVDAMLFGL------- 218
Query: 361 XXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--NGDVPYTHA 418
++ ++N+G+ + V R+ I+ L + R GDVP
Sbjct: 219 ------RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLL 272
Query: 419 NVSLAYKDFGYKPTTDLAAGLRKFVK 444
++ K G+KP + +R V+
Sbjct: 273 SIE-KLKRLGWKPRYNSEEAVRMAVR 297
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 128/326 (39%), Gaps = 37/326 (11%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++L+ G AG++GSH L G V+ +DN + ++ ++ + GDL
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAK---------FYNGDL 53
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L +F V+H AA + V +M+ P Y +N+ G + LLEV
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-K 112
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+++S+++ YG V P + Y TK A E++ H Y+ L R+F
Sbjct: 113 FIFSSTAATYG-EVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 300 VYG--PWG------RPDMAYFFFTKDILQGKTIDVYKTQDDRE-----VARDFTYIDDVV 346
V G P G RP+ + G+ + DD RD+ +++D+V
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231
Query: 347 KGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406
L + YNLGN + V +V + + N + V
Sbjct: 232 AAHFLGL----------KDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEV-- 279
Query: 407 MPRN-GDVPYTHANVSLAYKDFGYKP 431
PR GD A+ A + G+ P
Sbjct: 280 APRRAGDPARLVASSQKAKEKLGWDP 305
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 58/362 (16%)
Query: 119 MTVLVTGAAGFVGSHC-SLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M +L+TG AGF+GS +K D V+ +D Y +L+ + + + ++
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLE-SLSDISESNRYNFEHA 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D+ +T++F+ V+HLAA++ V ++ P +++ +NI G LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK---- 113
Query: 238 PSIVWA---------------SSSSVYG---------LNTQVPFSESHRTDQPASLYAAT 273
W+ S+ VYG + +P P+S Y+A+
Sbjct: 114 ---YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSAS 170
Query: 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333
K + + + + YGL YGP+ P+ + L+GK + +Y D
Sbjct: 171 KASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ- 229
Query: 334 EVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILE 393
RD+ Y++D + + YN+G + +V +
Sbjct: 230 --IRDWLYVEDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTIC 274
Query: 394 NLLNT---KAKKHVIRMPRNGDVPYTHANVSL----AYKDFGYKPTTDLAAGLRKFVKWY 446
+LL+ KA + ++ D P ++ ++ G+KP +G+RK V+WY
Sbjct: 275 DLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWY 334
Query: 447 VS 448
++
Sbjct: 335 LA 336
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 37/332 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG AGFVGSH + L G V +DNF + KR + + ++ D+
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFT----GRKRNVEHWIGHENFELINHDVV 85
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ PL ++ + HLA+ A NP + +N G +N L + K V + +
Sbjct: 86 E-PLYIEV------DQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGAR--L 136
Query: 241 VWASSSSVYGLNTQVPFSESH----RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ AS+S VYG P SE + P + Y K+ E + Y G+ + R
Sbjct: 137 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVAR 196
Query: 297 FFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
F +GP + F LQG+ + VY + R F Y+ D+V G V +
Sbjct: 197 IFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQ---TRAFQYVSDLVNGLVALXN 253
Query: 355 TAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 414
+ NLGN + +++NL+ + ++ + ++ D
Sbjct: 254 SNVSSPV--------------NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQD-DPQ 298
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
++ A G++P L GL K + ++
Sbjct: 299 KRKPDIKKAKLXLGWEPVVPLEEGLNKAIHYF 330
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 147/343 (42%), Gaps = 34/343 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
T+LVTG AG++GSH ++ L G V+ DN + ++ R +K+ K F E D+
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARI-EKITGKTPAFH-ETDV 64
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+D L ++FD P T +H AA V ++ P Y +N+ ++LL V +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE-RAVKR 123
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFF 298
IV++SS++VYG+ + P E+ + Y TK E+I + LR+F
Sbjct: 124 IVFSSSATVYGVPERSPIDETFPLSA-TNPYGQTKLMAEQILRDVEAADPSWRVATLRYF 182
Query: 299 TVYG----------PWGRPDMAYFFFTKDILQGKTIDV------YKTQDDREVARDFTYI 342
G P G P+ + + GK + Y T D V RD+ ++
Sbjct: 183 NPVGAHESGLIGEDPAGIPNN-LMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV-RDYIHV 240
Query: 343 DDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 402
D+ +G + ALD A L V NLG V +V E + +A
Sbjct: 241 VDLARGHIAALDA---------LERRDASLTV-NLGTGRGYSVLEVVRAFEK-ASGRAVP 289
Query: 403 HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
+ + R GDV +AN + A + G+K DL +W
Sbjct: 290 YELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 31/248 (12%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH- 170
PR + V +TG G +GSH + L +RGD V+G+DNF + R++ L+ H
Sbjct: 15 VPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT--------GRREHLKDHP 66
Query: 171 QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY---VASNIAGFVNL 227
+ VEG + D L+ +L + V+H AA + ++P + +N G N+
Sbjct: 67 NLTFVEGSIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNV 120
Query: 228 LEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH 286
++ K N V+ ++ YG+ Q P H + S YA +K A E+ Y
Sbjct: 121 VQAAKK-NNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANED----YLE 175
Query: 287 IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
GL R V GP FF + + +GK V K + RDF ++ D+
Sbjct: 176 YSGLDFVTFRLANVVGPRNVSGPLPIFFQR-LSEGKKCFVTKAR------RDFVFVKDLA 228
Query: 347 KGCVGALD 354
+ V A+D
Sbjct: 229 RATVRAVD 236
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 145/350 (41%), Gaps = 42/350 (12%)
Query: 121 VLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+L+TG AGF+GS + + D V+ +D Y +L + + Q + + D+
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT--YAGNLM-SLAPVAQSERFAFEKVDI 60
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L ++F V+HLAA++ V ++ P +++ +NI G LLE ++ +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQ---------PASLYAATKKAGEEIAHTYNHIYGL 290
S+ + ++T + + H TD P+S Y+A+K + + + + YGL
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
YGP+ P+ + L GK++ VY + + RD+ Y++D +
Sbjct: 181 PTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYG---NGQQIRDWLYVEDHARALY 237
Query: 351 GALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRMP 408
T YN+G + +V + LL A K H +
Sbjct: 238 CVATTGKVG-------------ETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHY 284
Query: 409 RN----------GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
R+ D+ Y + S ++ G P +G+RK V+WY++
Sbjct: 285 RDLITFVADRPGHDLRYA-IDASKIARELGCVPQETFESGMRKTVQWYLA 333
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 143/363 (39%), Gaps = 53/363 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D ++ +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD------------WKKNEHMTEDMFCDEFH 77
Query: 179 LNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNP 236
L D ++ V HV +LAA G +Q+ S + +N N++E + +N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 237 QPSIVWASSSSVYGL-----NTQVPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGL 290
+ASS+ +Y T V ES +P Y K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 291 ALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
RF +YGP W GR F K + D ++ D R FT+ID+
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDEC 253
Query: 346 VKGCVGALDTAXXXXXXXXXXXXPAQLRV-YNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + + R N+G+ V + + ++ + K H
Sbjct: 254 VEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFST 464
I P V +++ +L + G+ P L GLR ++Y+ I+ +++KE +
Sbjct: 299 IPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLR------ITYFWIKEQIEKEKAKGS 350
Query: 465 TTS 467
S
Sbjct: 351 DVS 353
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 143/363 (39%), Gaps = 53/363 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D ++ +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD------------WKKNEHMTEDMFCDEFH 77
Query: 179 LNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNP 236
L D ++ V HV +LAA G +Q+ S + +N N++E + +N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 237 QPSIVWASSSSVYGL-----NTQVPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGL 290
+ASS+ +Y T V ES +P Y K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 291 ALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
RF +YGP W GR F K + D ++ D R FT+ID+
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREAAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDEC 253
Query: 346 VKGCVGALDTAXXXXXXXXXXXXPAQLRV-YNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + + R N+G+ V + + ++ + K H
Sbjct: 254 VEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFST 464
I P V +++ +L + G+ P L GLR ++Y+ I+ +++KE +
Sbjct: 299 IPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLR------ITYFWIKEQIEKEKAKGS 350
Query: 465 TTS 467
S
Sbjct: 351 DVS 353
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 53/363 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D ++ +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD------------WKKNEHMTEDMFCDEFH 77
Query: 179 LNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNP 236
L D ++ V HV +LAA G +Q+ S + +N N++E + +N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 237 QPSIVWASSSSVYGL-----NTQVPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGL 290
+ASS+ +Y T V ES +P Y + A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGI 196
Query: 291 ALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
RF +YGP W GR F K + D ++ D R FT+ID+
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDEC 253
Query: 346 VKGCVGALDTAXXXXXXXXXXXXPAQLRV-YNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + + R N+G+ V + + ++ + K H
Sbjct: 254 VEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFST 464
I P V +++ +L + G+ P L GLR ++Y+ I+ +++KE +
Sbjct: 299 IPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLR------ITYFWIKEQIEKEKAKGS 350
Query: 465 TTS 467
S
Sbjct: 351 DVS 353
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 111/249 (44%), Gaps = 24/249 (9%)
Query: 107 VRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL 166
+R S M L+TG AGFVG + + L ++ V G N P+++
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVE------ 54
Query: 167 LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN 226
++ D+ D+ + K+ + ++ HLAA++ V+ + N + ++N+ G ++
Sbjct: 55 -------MISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 227 LLEVCKSVNPQPSIVWASSSSVYG--LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
+L+ + N I+ SS YG L + P SE ++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ-----DDREVARDF 339
YG+ + R F GP F K I+ I++ K + + E RDF
Sbjct: 167 VKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVD---IEMEKQEPIIKVGNLEAVRDF 223
Query: 340 TYIDDVVKG 348
T + D+V+
Sbjct: 224 TDVRDIVQA 232
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 53/363 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D ++ +F E
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASD------------WKKNEHMTEDMFCDEFH 77
Query: 179 LNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNP 236
L D ++ V HV +LAA G +Q+ S + +N N++E + +N
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR-ING 136
Query: 237 QPSIVWASSSSVYGL-----NTQVPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGL 290
+ASS+ +Y T V ES +P + K A EE+ YN +G+
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGI 196
Query: 291 ALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
RF +YGP W GR F K + D ++ D R FT+ID+
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRK---AQTSTDRFEMWGDGLQTRSFTFIDEC 253
Query: 346 VKGCVGALDTAXXXXXXXXXXXXPAQLRV-YNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + + R N+G+ V + + ++ + K H
Sbjct: 254 VEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFST 464
I P V +++ +L + G+ P L GLR ++Y+ I+ +++KE +
Sbjct: 299 IPGPEG--VRGRNSDNNLIKEKLGWAPNMRLKEGLR------ITYFWIKEQIEKEKAKGS 350
Query: 465 TTS 467
S
Sbjct: 351 DVS 353
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVF-IVEG 177
+L+TG GF+GS+ + +G ++ DN S K A L L F V G
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNL------SRKGATDNLHWLSSLGNFEFVHG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + +T+L HLA Q + ++ NP N+ G +NLLE + N
Sbjct: 58 DIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSN 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHR----TDQPA-----------SLYAATKKAGEEIAH 282
+I+++S++ VYG Q ++E+ D+P S Y +K A ++
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 283 TYNHIYGLALTGLRFFTVYG 302
Y I+GL R ++YG
Sbjct: 178 DYARIFGLNTVVFRHSSMYG 197
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 24/235 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + VTG GF+G + ++K G+ + L + K + ++ + +
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIIL----------TRSIGNKAINDYEYRVSDYT 52
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D L+ +L DV V+HLAA G Q S N NL + C N
Sbjct: 53 LED--LINQLNDVDA---VVHLAATRG----SQGKISEFHDNEILTQNLYDACYE-NNIS 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+IV+AS+ S Y T +P++E P Y +K A E I + Y+ GL + LRF
Sbjct: 103 NIVYASTISAYSDETSLPWNEK-ELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
+YG + + F + G+ + ++ + R+F Y D K + AL
Sbjct: 162 HLYGFNEKNNYXINRFFRQAFHGEQLTLHA---NSVAKREFLYAKDAAKSVIYAL 213
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R + M +L+TG AG +GS+ +G +L +DNF + R+ L + +
Sbjct: 17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT-------GKREVLPPVAGLSV 69
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY---VASNIAGFVNLLEVC 231
+EG + DA LL + FD THV+H AA A ++P + A+N+ G +N+ +
Sbjct: 70 IEGSVTDAGLLERAFDSFKPTHVVHSAA------AYKDPDDWAEDAATNVQGSINVAKAA 123
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+ ++ ++ YG VP T P + Y +K AGE + + +
Sbjct: 124 SKAGVK-RLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGE----AFLMMSDVP 177
Query: 292 LTGLRFFTVYGP 303
+ LR V GP
Sbjct: 178 VVSLRLANVTGP 189
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 138/370 (37%), Gaps = 64/370 (17%)
Query: 119 MTVLVTGAAGFVGSHCSLA-LKKRGDGVLGLDNFNSYYDPSLK-RARQKLLQKHQ----- 171
M VLV G AG++GSH A L+ V+ +D+ + S R+ + +K Q
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 172 --------VFIVEGDLNDAPLLTKLFDV-VPFTHVLHLAAQAGVRYAMQNPQSYVASNIA 222
+ GD+ + L +F P V+H+ A V ++++P Y +N+
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 223 GFVNLLEVCKSVNPQPSIVWASSSSVYG------LNTQVPFSESHRTDQPASLYAATKKA 276
G + LL+ ++ I+++SS++++G ++T + + P S Y +K
Sbjct: 123 GILRLLQA-MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLI 181
Query: 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------------------- 313
E + YG+ LR+F G D+ +
Sbjct: 182 AERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQR 241
Query: 314 --FTKDILQGKTIDVYKTQ---DDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXX 368
+D K + ++ T D RD+ ++ D+ + ALD
Sbjct: 242 LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY- 300
Query: 369 PAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM----PRNGDVPYTHANVSLAY 424
V+NLG + V ++ + K H I + R GD Y A A
Sbjct: 301 ---FSVFNLGTSRGYSVREVIEVAR-----KTTGHPIPVRECGRREGDPAYLVAASDKAR 352
Query: 425 KDFGYKPTTD 434
+ G+KP D
Sbjct: 353 EVLGWKPKYD 362
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+G L+TG G G++ + L ++G V G D + + ++L ++ V I+
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEF---ASWRLKELGIENDVKIIH 58
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
DL + + + + V V +LAAQ+ V + + P + G + +LE ++V P
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKP 118
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALTGL 295
AS+S ++G ++P +E P S YA K G I Y Y + A +G+
Sbjct: 119 DTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLFGHWITVNYREAYNMFACSGI 177
Query: 296 RF 297
F
Sbjct: 178 LF 179
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 26/192 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L +G V GL NFN+ Y DP + L++ H
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDP--HNVNKALMKLHY 89
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEV 230
DL DA L + DV+ V +LAAQ+ V + + P Y A +A G + LLE
Sbjct: 90 -----ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIP-DYTADVVATGALRLLEA 143
Query: 231 CKS--VNPQPSIVW--ASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH 286
+S ++ ++ + A SS ++G +T P SE+ P S YAA+K A Y
Sbjct: 144 VRSHTIDSGRTVKYYQAGSSEMFG-STPPPQSETTPF-HPRSPYAASKCAAHWYTVNYRE 201
Query: 287 IYGL-ALTGLRF 297
YGL A G+ F
Sbjct: 202 AYGLFACNGILF 213
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 133/352 (37%), Gaps = 60/352 (17%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
V+V G AGFVGS+ L + G + V +DN L + + V E +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL-------LSAEKINVPDHPAVRFSETSI 87
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D LL L D + +V HLA G + ++ +P + +N + L E K
Sbjct: 88 TDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 240 IVWASSSSVYGLNT--------QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+V++++ T + H D P Y+ +K GE + Y+ + L
Sbjct: 146 VVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSP---YSMSKIFGEFYSVYYHKQHQLP 202
Query: 292 LTGLRFFTVYGP--------W-GRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARD 338
RF VYGP W G P + F L+G + + ++ RD
Sbjct: 203 TVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPL---ENGGVATRD 259
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
F +++DV G + P VYN+ + + L + + + T
Sbjct: 260 FIFVEDVANGLIAC-----------AADGTPGG--VYNIASGKETSIADLATKINEI--T 304
Query: 399 KAKKHVIRMPRNGDVPYTHANVSL-----AYKDFGYKPTTDLAAGLRKFVKW 445
+ R+P+ P+ ++ A ++ G+ + GLRK ++W
Sbjct: 305 GNNTELDRLPKR---PWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEW 353
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VL+ G GF+G+H + L + D++ Y A + L VEGD
Sbjct: 1 MRVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNHPHFHFVEGD 53
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++ + + V VL L A A +NP + + ++ C V +
Sbjct: 54 ISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC--VKYRK 110
Query: 239 SIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
I++ S+S VYG+ + F E H ++P +Y+ +K+ + + Y GL
Sbjct: 111 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 170
Query: 293 TGLRFFTVYGP 303
T R F GP
Sbjct: 171 TLFRPFNWMGP 181
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 98/244 (40%), Gaps = 47/244 (19%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +G +L +DN L+ F+ DL
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN----------------LKDGTKFVNLVDL 45
Query: 180 NDAPLLTK---LFDVVP------FTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFV 225
N A + K L ++ + H A + +Y M N Y
Sbjct: 46 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKE------ 99
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
LL C + + ++ASS++ YG T F ES ++P ++Y +K +E
Sbjct: 100 -LLHYC--LEREIPFLYASSAATYGGRTS-DFIESREYEKPLNVYGYSKFLFDEYVRQIL 155
Query: 286 HIYGLALTGLRFFTVYGPW----GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341
+ G R+F VYGP G F + G++ +++ ++ RDF Y
Sbjct: 156 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVY 213
Query: 342 IDDV 345
+ DV
Sbjct: 214 VGDV 217
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 21/198 (10%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQKLLQKHQVFIVE 176
G V VTG GF GS SL L + G V G ++ PSL + R L + +
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVKGY-ALDAPTVPSLFEIVRLNDLMESHI---- 63
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D L V H+AAQ VR + + P ++N+ G V+LLE K V
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPA---SLYAATKKAGEEIAHTYNHIY----- 288
++V +S Y V +R ++P Y+ +K E +A + + +
Sbjct: 124 IKAVVNITSDKCYDNREWV---WGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPAN 180
Query: 289 ----GLALTGLRFFTVYG 302
G+ L +R V G
Sbjct: 181 YEQHGVGLASVRAGNVIG 198
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 7 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S+S VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 117 YC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 7 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S+S VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 117 YC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 7 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S+S VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 117 YC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 7 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S+S VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 117 YC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 98/244 (40%), Gaps = 47/244 (19%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +G +L +DN L+ F+ DL
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDN----------------LKDGTKFVNLVDL 92
Query: 180 NDAPLLTK---LFDVVP------FTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFV 225
N A + K L ++ + H A + +Y M N Y
Sbjct: 93 NIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE------ 146
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
LL C + + ++ASS++ YG T F ES ++P +++ +K +E
Sbjct: 147 -LLHYC--LEREIPFLYASSAATYGGRTS-DFIESREYEKPLNVFGYSKFLFDEYVRQIL 202
Query: 286 HIYGLALTGLRFFTVYGPW----GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341
+ G R+F VYGP G F + G++ +++ ++ RDF Y
Sbjct: 203 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN--FKRDFVY 260
Query: 342 IDDV 345
+ DV
Sbjct: 261 VGDV 264
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 7 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 57
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 58 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 116
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S++ VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 117 YC--VKYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 174
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 175 YGEKEGLQFTLFRPFNWMGP 194
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L ++G V G+ +FN+ Y DP + L
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY--- 61
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
GDL+D LT++ V V +L A + V + ++P+ + G + LLE
Sbjct: 62 -----GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 116
Query: 232 K--SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
+ + + AS+S +YGL ++P E+ P S YA K I Y YG
Sbjct: 117 RFLGLEKKTRFYQASTSELYGLVQEIPQKET-TPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 290 L-ALTGLRF 297
+ A G+ F
Sbjct: 176 MYACNGILF 184
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 136/347 (39%), Gaps = 50/347 (14%)
Query: 120 TVLVTGAAGFVGSH-CSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
++VTG AGF+GS+ D V LD + +A + + +V +V G
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY----AGNKANLEAILGDRVELVVG 61
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ DA L+ KL ++H AA++ ++ +P ++ +N G LLE + + +
Sbjct: 62 DIADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 238 PSIVWASSSSVYGLNTQVPFSE--------------SHRTDQPASLYAATKKAGEEIAHT 283
V S+ VYG +P E + P+S Y++TK A + I
Sbjct: 120 FHHV--STDEVYG---DLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKA 174
Query: 284 YNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343
+ +G+ T YGP+ + +IL G +Y + RD+ + +
Sbjct: 175 WVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKN---VRDWIHTN 231
Query: 344 DVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVS-ILENLLNTK-AK 401
D G L Y +G ++ ILE + K A
Sbjct: 232 DHSTGVWAILTKGRMG-------------ETYLIGADGEKNNKEVLELILEKMGQPKDAY 278
Query: 402 KHVIRMPRNG-DVPYTHANVSLAYKDFGYKPT-TDLAAGLRKFVKWY 446
HV R G D+ Y + S + G+ P TD + GL + ++WY
Sbjct: 279 DHV--TDRAGHDLRYA-IDASKLRDELGWTPQFTDFSEGLEETIQWY 322
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG-DL 179
+L+ GA G +G+ + L+K + G +N + +++ ++ +V D
Sbjct: 5 ILIIGACGQIGTELTQKLRK----LYGTENVIA---SDIRKLNTDVVNSGPFEVVNALDF 57
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
N + L +V T + +AA A +NP N+ ++L + K+ +
Sbjct: 58 NQ---IEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIK-K 112
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
I W SS +V+G T + + +P+++Y +K+AGE Y++IYG+ + +R+
Sbjct: 113 IFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 300 VYGPWGRP------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
+ W P D A F K I K Y+ E Y+DD + + +
Sbjct: 173 LIS-WSTPPGGGTTDYAVDIFYKAIADKK----YECFLSSETKMPMMYMDDAIDATINIM 227
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
+ T RR VL+ G GF+G+H + L + D++ Y A + L
Sbjct: 309 ACTARRRT--RVLILGVNGFIGNHLTERLLRE-------DHYEVYGLDIGSDAISRFLNH 359
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
VEGD++ + + V VL L A A +NP + + ++
Sbjct: 360 PHFHFVEGDISIHSEWIE-YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 418
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHT 283
C V + I++ S+S VYG+ + F E H ++P +Y+ +K+ + +
Sbjct: 419 YC--VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 476
Query: 284 YNHIYGLALTGLRFFTVYGP 303
Y GL T R F GP
Sbjct: 477 YGEKEGLQFTLFRPFNWMGP 496
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 23/179 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG+AG VG AL+ +G V G D PS + V G L
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFD-----LRPSGTGGEE----------VVGSLE 66
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L+ ++ + VLHL A + +A + A N+ G LL+ + +
Sbjct: 67 DGQALSDA--IMGVSAVLHLGAF--MSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RF 121
Query: 241 VWASSSSVYGLNTQ--VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
V+ASS VY N +P +E H P S Y TK GEE+ + + LRF
Sbjct: 122 VFASSGEVYPENRPEFLPVTEDHPL-CPNSPYGLTKLLGEELVRFHQRSGAMETVILRF 179
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 21/182 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTGAAG VGS L V + D A ++ IV DL
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV----RLSDIVDLGAAEAHEE--------IVACDLA 52
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + L V ++HL +++ P + +NI G NL E +++ +P
Sbjct: 53 DAQAVHDL--VKDCDGIIHLGG-----VSVERPWNDILQANIIGAYNLYEAARNLG-KPR 104
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
IV+ASS+ G + ++ +P SLY +K GE++A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 300 VY 301
+
Sbjct: 165 CF 166
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 55/238 (23%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +++TGA GFVG + L D H +F V
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQ 34
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ L + L ++HLA GV ++ + + N++ ++L++ +P
Sbjct: 35 TKEEELESALLKA---DFIVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+I+ +SS TQ D P Y +K GE++ Y YG + R+
Sbjct: 88 AILLSSSIQA----TQ---------DNP---YGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 299 TVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
++G W +P+ F I + + I V +DR V Y+DD+V A++
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 64/286 (22%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQ-VFIVEGD 178
VL+ G GF+G H S + + D V G+D ++ R L KH+ + EGD
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMD---------MQTDRLGDLVKHERMHFFEGD 77
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGF-----VNLLEVCKS 233
+ + + V +L L A A P +YV + F NL V +
Sbjct: 78 ITINKEWVE-YHVKKCDVILPLVAIA-------TPATYVKQPLRVFELDFEANLPIVRSA 129
Query: 234 VNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLYAATKKAGEEIAHTYNHI 287
V +V+ S+S VYG+ F ++P +YA +K+ + + I
Sbjct: 130 VKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRV------I 183
Query: 288 YGLALTGLRFFTVYGP--WGRPDMAYFFFTKD------------ILQGKTIDVYKTQDDR 333
+G + GL FT++ P W P + + K+ I++G+ I + D
Sbjct: 184 WGYGMEGLN-FTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGG 239
Query: 334 EVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGN 379
R FTY+DD + + ++ + A ++YN+GN
Sbjct: 240 SQKRAFTYVDDGISALMKIIENSNGV----------ATGKIYNIGN 275
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 7/180 (3%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRAR-QKLLQKHQVFIVEGD 178
+ LVTG G G++ + L ++G V GL S S R R ++L + + +GD
Sbjct: 16 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS----SDTRWRLRELGIEGDIQYEDGD 71
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ DA + + V +LAAQ+ V + P + + G +LLE + +P+
Sbjct: 72 MADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET 131
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALTGLRF 297
AS+S ++GL Q + + P S Y K G I Y +GL A +G+ F
Sbjct: 132 RFYQASTSEMFGL-IQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 190
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQKLLQKHQVFIVE 176
G V VTG GF G SL L+ G V G + + PSL + AR + ++
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGY-SLTAPTVPSLFETARVADGMQSEI---- 63
Query: 177 GDLNDA-PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ D LL + + P V H+AAQ VR + P ++N+ G V LLE + V
Sbjct: 64 GDIRDQNKLLESIREFQPEI-VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
Query: 236 PQPSIVWASSSSVY 249
++V +S Y
Sbjct: 123 GVKAVVNITSDKCY 136
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 55/236 (23%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+++TGA GFVG + L D H +F V
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQTK 36
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ L + L ++HLA GV ++ + + N++ ++L++ +P+I
Sbjct: 37 EEELESALLKA---DFIVHLA---GVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
+ +SS TQ D P Y +K GE++ Y YG + R+ +
Sbjct: 90 LLSSSIQA----TQ---------DNP---YGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
Query: 301 YGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
+G W +P+ F I + + I V +DR V Y+DD+V A++
Sbjct: 134 FGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIE 185
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTGAAG +G L + +L L + S DP+ V+ DL
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAE-ILRLADL-SPLDPAGPNEE----------CVQCDLA 53
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + + V ++HL +++ P + + NI G NL E ++ + QP
Sbjct: 54 DANAVNAM--VAGCDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAARA-HGQPR 105
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
IV+ASS+ G Q +P LY +K GE +A Y +G
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFG 155
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSL-------------KRAR 163
G V+V G G+ G +L L K+ V +DN +D L + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS---N 220
K L + + GD+ D L + F V+H Q Y+M + V + N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSSVYGL------NTQVPFSESHRTD------QPAS 268
+ G +N+L K + +V + YG + + + RTD Q +S
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 269 LYAATK-KAGEEIAHTYNHIYGLALTGLRFFTVYG 302
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 31/215 (14%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSL-------------KRAR 163
G V+V G G+ G +L L K+ V +DN +D L + +R
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 70
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS---N 220
K L + + GD+ D L + F V+H Q Y+M + V + N
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 130
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSSVYGL------NTQVPFSESHRTD------QPAS 268
+ G +N+L K + +V + YG + + + RTD Q +S
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 190
Query: 269 LYAATK-KAGEEIAHTYNHIYGLALTGLRFFTVYG 302
Y +K IA T +G+ T L VYG
Sbjct: 191 FYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 224
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 31/212 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSL-------------KRARQKL 166
V+V G G+ G +L L K+ V +DN +D L + +R K
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 167 LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS---NIAG 223
L + + GD+ D L + F V+H Q Y+M + V + N+ G
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 224 FVNLLEVCKSVNPQPSIVWASSSSVYGL------NTQVPFSESHRTD------QPASLYA 271
+N+L K + +V + YG + + + RTD Q +S Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 272 ATK-KAGEEIAHTYNHIYGLALTGLRFFTVYG 302
+K IA T +G+ T L VYG
Sbjct: 184 LSKVHDSHNIAFTCK-AWGIRATDLNQGVVYG 214
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIV 175
TV VTGA+GF+GS + L +RG V + DP+ + + LL + + +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS-NIAGFVNLLEVCKSV 234
+ DL D + + T V H+A + + ++P++ V I G + +++ C +
Sbjct: 62 KADLADEGSFDEA--IKGCTGVFHVATP--MDFESKDPENEVIKPTIEGMLGIMKSCAAA 117
Query: 235 NPQPSIVWASSSSVYGLNT-QVP-FSESHRTDQP--------ASLYAATKKAGEEIAHTY 284
+V+ SS+ + Q+P + ES +D A +Y +K E+ A Y
Sbjct: 118 KTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKY 177
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 121 VLVTGAAGFVGSHCS--LALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ--VFIVE 176
+LVTG++G +G+ LA K V+ D ++Q+ + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASD----------------IVQRDTGGIKFIT 45
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
D+++ + + + + HLA + ++P N+ G N+LE K
Sbjct: 46 LDVSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV 104
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ +V S+ V+G T S +P ++Y TK A E + Y +GL + LR
Sbjct: 105 E-KVVIPSTIGVFGPETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 297 F 297
+
Sbjct: 164 Y 164
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 38/196 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV--E 176
M +LVTG +G VG + G G+ G D VF+ +
Sbjct: 8 MRILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKD 45
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVC 231
DL D LF+ V THV+HLAA G ++Y + + N+ N+L
Sbjct: 46 ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNL----DFWRKNVHMNDNVLHSA 101
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL----YAATKKAGEEIAHTYNHI 287
V + +V S+ ++ T P E+ + P Y+ K+ + Y
Sbjct: 102 FEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQ 160
Query: 288 YGLALTGLRFFTVYGP 303
YG T + V+GP
Sbjct: 161 YGCTFTAVIPTNVFGP 176
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 38/196 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV--E 176
M +LVTG +G VG + G G+ G D VF+ +
Sbjct: 7 MRILVTGGSGLVGKAIQKVVAD-GAGLPGED---------------------WVFVSSKD 44
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVC 231
DL D LF+ V THV+HLAA G ++Y + + N+ N+L
Sbjct: 45 ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNL----DFWRKNVHMNDNVLHSA 100
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL----YAATKKAGEEIAHTYNHI 287
V + +V S+ ++ T P E+ + P Y+ K+ + Y
Sbjct: 101 FEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQ 159
Query: 288 YGLALTGLRFFTVYGP 303
YG T + V+GP
Sbjct: 160 YGCTFTAVIPTNVFGP 175
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA + AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIARIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 27/180 (15%)
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D L + V +H AA V A NP + +NI G N++ C
Sbjct: 77 GDVRDLERLNYALEGVDI--CIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC----- 129
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG-- 294
+ + S V L+T + P +LY ATK +++ + N+ G + T
Sbjct: 130 ----LKNAISQVIALSTD-------KAANPINLYGATKLCSDKLFVSANNFKGSSQTQFS 178
Query: 295 -LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
+R+ V G G + F K ++Q K ++ T D + R + +D+ V + +L
Sbjct: 179 VVRYGNVVGSRG----SVVPFFKKLVQNKASEIPIT--DIRMTRFWITLDEGVSFVLKSL 232
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ +S +Y + P +ES T++P YA K AG ++ +YN YG
Sbjct: 102 LLFLGASCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 121 VLVTGAAGFVGSHCS--LALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ--VFIVE 176
+LVTG++G +G+ LA K V+ D ++Q+ + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASD----------------IVQRDTGGIKFIT 45
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
D+++ + + + + HLA + ++P N+ G N+LE K
Sbjct: 46 LDVSNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV 104
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ +V S+ V+G T S +P +++ TK A E + Y +GL + LR
Sbjct: 105 E-KVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
Query: 297 F 297
+
Sbjct: 164 Y 164
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 35/191 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVL------------RTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQN-PQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 101
Query: 240 IVWASSSSVYGLNTQVPFSESHR-------TDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P ++ K AG ++ +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPEAI---AKIAGIKLCESYNRQYGRDY 158
Query: 293 TGLRFFTVYGP 303
+ +YGP
Sbjct: 159 RSVMPTNLYGP 169
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 28/64 (43%)
Query: 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV 175
P G VLVTGA GFV SH L + G V G S KR K + + +V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 176 EGDL 179
E L
Sbjct: 69 EDXL 72
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%)
Query: 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV 175
P G VLVTGA GFV SH L + G V G S KR K + + +V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 176 E 176
E
Sbjct: 69 E 69
>pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat
Peroxisomal Multifunctional Enzyme Type 2
pdb|1GZ6|B Chain B, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat
Peroxisomal Multifunctional Enzyme Type 2
pdb|1GZ6|C Chain C, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat
Peroxisomal Multifunctional Enzyme Type 2
pdb|1GZ6|D Chain D, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat
Peroxisomal Multifunctional Enzyme Type 2
Length = 319
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 111 ATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
A+P R +G VLVTGA G +G +LA +RG
Sbjct: 2 ASPLRFDGRVVLVTGAGGGLGRAYALAFAERG 33
>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4B79|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery
Length = 242
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGV--LGLDNFNSYYDPSLKRARQKLLQKHQVFIV 175
G VLVTG + +G+ ++ + G V LGLD + + P R R++ L
Sbjct: 11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDA-DGVHAPRHPRIRREEL-------- 61
Query: 176 EGDLNDAPLLTKLFDVVPFTHVL 198
D+ D+ L +LF+ +P VL
Sbjct: 62 --DITDSQRLQRLFEALPRLDVL 82
>pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|B Chain B, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|C Chain C, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|D Chain D, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|E Chain E, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
pdb|1ZBQ|F Chain F, Crystal Structure Of Human 17-beta-hydroxysteroid
Dehydrogenase Type 4 In Complex With Nad
Length = 327
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
H +P R +G VLVTGA +G +LA +RG
Sbjct: 21 HMGSPLRFDGRVVLVTGAGAGLGRAYALAFAERG 54
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF 173
++ NG LVTGA G +G +L L + G + LD + + R+K ++ +
Sbjct: 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARS-Y 61
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA 222
+ + +A + T V F + L AG + A Q Y + + A
Sbjct: 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFA 110
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ---VFIVEG 177
+L+ G G +G H A K G+ L + +++L+ +Q V ++EG
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYAL--VRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 178 DLNDAPLLTK 187
D+ND L K
Sbjct: 63 DINDHETLVK 72
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 76/213 (35%), Gaps = 40/213 (18%)
Query: 116 PNGMTVLVTGAAGFVGSHCSLALKKR----------------GDGVLGLDNFNSYYDPSL 159
P TVL+TGA GF+G + L L +R D L+ DP L
Sbjct: 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPEL 130
Query: 160 KRARQKLLQKHQVFIVEGDLN------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP 213
R K L ++ +V GD + D P +L + V A + + P
Sbjct: 131 LR-HFKELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELFGP 189
Query: 214 QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH--RTDQP----- 266
N+AG L+ + + +P + S++ V F+E R P
Sbjct: 190 ------NVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTEDADIRVISPTRTVD 242
Query: 267 ---ASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
A Y +K AGE + N + L + R
Sbjct: 243 GGWAGGYGTSKWAGEVLLREANDLCALPVAVFR 275
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 208 YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ 254
Y +Q P + +A I G +LE C S P PS W V L ++
Sbjct: 223 YFLQRPSNVIA--IEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,614,020
Number of Sequences: 62578
Number of extensions: 535677
Number of successful extensions: 1460
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 108
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)