BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011842
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 40/352 (11%)
Query: 119 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGIL-- 176
F NLGDP + ++ E + L L N + +G+I + GTE NL +
Sbjct: 53 FLETNLGDPGLFKG----TKLLEEKAVALLGSL--LNNKDAYGHIVSGGTEANLXALRCI 106
Query: 177 --VGREVFPDGI-------LYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAK 227
+ RE G+ + +H+S K +E + ID F
Sbjct: 107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLEYIYAPIKEDYTID-EKFVKD 165
Query: 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV- 286
+++ D II + GTT G +D+++ + + +E + YIH D A GL++PF+
Sbjct: 166 AVEDYDVDGIIGI-AGTTELGTIDNIEELSKIAKE-----NNIYIHVDAAFGGLVIPFLD 219
Query: 287 ----KKAPKVSFKKPIG--SVSVSGHKFVGCPMPCG-VQITRMEHINVLSSNVEYLA-SR 338
KK F +G S+++ HK CP+P G + + + L + YL +R
Sbjct: 220 DKYKKKGVNYKFDFSLGVDSITIDPHKXGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR 279
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
ATI+G+R G + L G +G +K V +C N YL +L + ++ + +
Sbjct: 280 QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECXENTLYLYKKLKENNFKPVIEPILN 339
Query: 399 TVVFERPQDEEFVRR------WQLACQGNIA-HVVVMPNVTIDKLDDFLNEL 443
V E +E ++ + C A +VV P++ + +D+F+ L
Sbjct: 340 IVAIEDEDYKEVCKKLRDRGIYVSVCNCVKALRIVVXPHIKREHIDNFIEIL 391
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 23/225 (10%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S +SHYS+ KA + + C G+I ADF+AK+L+ K K
Sbjct: 183 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQK 242
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 243 GYVPFYVNATAGTTVYGAFDPIQEIADICEKY-----NLWLHVDAAWGGGLLMSRKHRHK 297
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----------NVLSSNVEYLASRDAT 341
++ + SV+ + H +G + C + + + I + + +Y S D
Sbjct: 298 LNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 357
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ G H IF W KG GF+ ++ KCL A YL ++
Sbjct: 358 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKI 402
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 23/225 (10%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S +SHYS+ KA + + C G+I ADF+AK+L+ K K
Sbjct: 186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQK 245
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 246 GYVPFYVNATAGTTVYGAFDPIQEIADICEKY-----NLWLHVDAAWGGGLLMSRKHRHK 300
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITR----------MEHINVLSSNVEYLASRDAT 341
++ + SV+ + H +G + C + + M + + Y S D
Sbjct: 301 LNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTG 360
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ G H IF W KG GF+ ++ KCL A YL ++
Sbjct: 361 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKI 405
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 35/250 (14%)
Query: 161 GYITNCGTEGNLHGILVGR-EVFPDG-----------ILYASRESHYSVFKAARMYRM-- 206
G + G N++ +++ R ++FP+ I + S SH+S+ K A +
Sbjct: 150 GIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGT 209
Query: 207 -ECVKVDCLISGEIDCADFKAKLLQNKDK---PAIINVNIGTTVKGAVDDLDLVIQTLEE 262
+ + C G++ +D + ++L+ K K P +++ GTTV GA D L V ++
Sbjct: 210 DSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKK 269
Query: 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM 322
+ ++H D A G ++ K K+S + SV+ + H +G P+ C + R
Sbjct: 270 Y-----KIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVRE 324
Query: 323 EHI--NVLSSNVEYLASRDATIMGSRNG---------HAPIF-LWYTLNRKGYKGFQKEV 370
E + N + YL +D S + H +F LW KG GF+ V
Sbjct: 325 EGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHV 384
Query: 371 QKCLRNAHYL 380
KCL A YL
Sbjct: 385 DKCLELAEYL 394
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 272 IHCDGALFGLMMPFVKKAPKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHI--NVL 328
+H D A G + PFV F+ P + S+S SGHKF P+ CG I R E L
Sbjct: 226 MHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQEL 285
Query: 329 SSNVEYLASRDAT--IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386
NV+YL + T I SR I +Y R G +G+ K + A YL D +
Sbjct: 286 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 345
Query: 387 AG 388
G
Sbjct: 346 LG 347
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 272 IHCDGALFGLMMPFVKKAPKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHI--NVL 328
+H D A G + PFV F+ P + S+S SGHKF P+ CG I R E L
Sbjct: 240 MHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQEL 299
Query: 329 SSNVEYLASRDAT--IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386
NV+YL + T I SR I +Y R G +G+ K + A YL D +
Sbjct: 300 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
Query: 387 AG 388
G
Sbjct: 360 LG 361
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 272 IHCDGALFGLMMPFVKKAPKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHI--NVL 328
+H D A G + PFV F+ P + S+S SGHKF P+ CG I R E L
Sbjct: 240 MHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQEL 299
Query: 329 SSNVEYLASRDAT--IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386
NV+YL + T I SR I +Y R G +G+ K + A YL D +
Sbjct: 300 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 359
Query: 387 AG 388
G
Sbjct: 360 LG 361
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 22/157 (14%)
Query: 242 IGTTVKGAVDDL----DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
+G+T+ G +D+ DL+++ +E+G+ IH D A G + PF+ + F+ P
Sbjct: 210 LGSTLNGEFEDVKLLNDLLVEKNKETGWDTP---IHVDAASGGFIAPFLYPELEWDFRLP 266
Query: 298 -IGSVSVSGHKFVGCPMPCGVQITRME---------HINVLSSNVEYLASRDATIMGSRN 347
+ S++VSGH + G I R + HIN L ++ T+ S+
Sbjct: 267 LVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTF-----TLNFSKG 321
Query: 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
I +Y L R G++G++ ++ C N L++ L
Sbjct: 322 SSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGL 358
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 31/200 (15%)
Query: 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGI-------------- 186
E V++W ++L + + G T+ GT+ N G+ + R+ D +
Sbjct: 142 EQKVVNWLCDKYDL-SEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGLPDYA 200
Query: 187 ----LYASRESHYSVFKAAR---MYRMECVKVDCLISGEIDCADFKAKLLQNKDK---PA 236
+ S++SH++V K+A + VD G D + Q K + P
Sbjct: 201 DKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPF 260
Query: 237 IINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296
I GTT GA+DDLD + + D + H DGA G ++ K+ ++ +
Sbjct: 261 AIVGTAGTTDHGAIDDLDFI----ADXAVKHDX-WXHVDGAYGGALILSSHKS-RLKGVE 314
Query: 297 PIGSVSVSGHKFVGCPMPCG 316
S+SV HK + CG
Sbjct: 315 RAHSISVDFHKLFYQTISCG 334
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 30/229 (13%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMY-----RMECVKVDCLISGEIDCADFKAKLLQNK 232
G P L+ S+E HYS+ K A + VK D G++ D + ++ +
Sbjct: 197 GLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAE 254
Query: 233 DK---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289
+ P +++ GTTV GA D L+ + + G ++H D A G ++
Sbjct: 255 AEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHG-----LWLHVDAAWGGSVLLSQTHR 309
Query: 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS----SNVEYLASRD-----A 340
+ + SV+ + HK + + C + + + N+L S YL +D A
Sbjct: 310 HLLDGIQRADSVAWNPHKLLAAGLQCSALLLQ-DTSNLLKRCHGSQASYLFQQDKFYDVA 368
Query: 341 TIMGSRNGHAP-----IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
G + + LW +G +G ++ + + A YL + +
Sbjct: 369 LDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEM 417
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 27/232 (11%)
Query: 187 LYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTV 246
+ A +H KAA + M+ V E+D ++ L + K IN N V
Sbjct: 161 IIAPVTAHAGFDKAAYYFGMKLRHV------ELDPTTYQVDLGKVKK---FINKNTVLLV 211
Query: 247 KGAVDDLDLVIQTLEESGFTQDRFYI--HCDGALFGLMMPFVKKA-----PKVSFKKP-I 298
A + + +E G ++ + H D L ++ F++KA P + F+ P +
Sbjct: 212 GSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV 271
Query: 299 GSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR----DATIMGSRNGHAPIFL 354
S+S HK+ P V + R + + V + T+ GSR G +
Sbjct: 272 TSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGC 331
Query: 355 WYTLNRKGYKGF----QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF 402
W T+ G G+ Q+ V ++ Y+++ + D I M N S + F
Sbjct: 332 WATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDI--MGNPRYSVISF 381
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 27/232 (11%)
Query: 187 LYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTV 246
+ A +H KAA + M+ V E+D ++ L + K IN N V
Sbjct: 161 IIAPVTAHAGFDKAAYYFGMKLRHV------ELDPTTYQVDLGKVKK---FINKNTVLLV 211
Query: 247 KGAVDDLDLVIQTLEESGFTQDRFYI--HCDGALFGLMMPFVKKA-----PKVSFKKP-I 298
A + + +E G ++ + H D L ++ F++KA P + F+ P +
Sbjct: 212 GSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV 271
Query: 299 GSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR----DATIMGSRNGHAPIFL 354
S+S H + P V + R + + V + T+ GSR G +
Sbjct: 272 TSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGC 331
Query: 355 WYTLNRKGYKGF----QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF 402
W T+ G G+ Q+ V ++ Y+++ + D I M N S + F
Sbjct: 332 WATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDI--MGNPRYSVISF 381
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 39 GHELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKEAYMAGV---LARYRKTLMER 95
GH +K T+ + +LG V P + FTG+ A+M V LAR LM
Sbjct: 119 GH-IKVTTSVSQAILG---------VFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMAN 168
Query: 96 TKHHLGYPYN---LDFDY------GALAQLQHFSINNLGDPFIESNY 133
+L + YN +D Y G + + + NL D +++ Y
Sbjct: 169 IYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFY 215
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 69 ADDEFTGDKE-AYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDP 127
DD+F + +++ V R++ T R + L Y N +F AQL+H S N D
Sbjct: 67 TDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDK 126
Query: 128 FIESNYGV 135
+E+ V
Sbjct: 127 VMETQAQV 134
>pdb|4DGV|H Chain H, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, P2(1) Form
pdb|4DGY|H Chain H, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, C2 Form
Length = 226
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 128 FIESNYGVH-SRQFEVGVLDWFARLWELENNEYW 160
F +NYG+H RQ L+W A +W ENN+Y+
Sbjct: 27 FTFNNYGMHWVRQTPGKGLEWLAVIWFDENNKYY 60
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 285 FVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE 333
+++ +P S+ KP + + G + GC P G++ ++E+ + +S+ +
Sbjct: 463 YIRISPTGSYNKPALRLELQGCEVNGCSTPLGMESGKIENKQITASSFK 511
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 170 GNLHGILVGREVFPDGILYASRESHYSVFKAARMYR---MECVKVDCLISGEIDC 221
G L GI + R+ FP +LYA + Y V A+ + M+ K + G ID
Sbjct: 696 GVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGSIDV 750
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 387 AGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446
AG+ + + + T+ E D + RR Q+AC G PN+ +D+L++++ L E+
Sbjct: 96 AGLLSAMEYVQKTLTDEELAD--WKRRQQIACIGG------PPNICLDRLENWITSLAES 147
Query: 447 R 447
+
Sbjct: 148 Q 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,420,035
Number of Sequences: 62578
Number of extensions: 609479
Number of successful extensions: 1256
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 20
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)