RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011842
(476 letters)
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 992 bits (2566), Expect = 0.0
Identities = 397/458 (86%), Positives = 422/458 (92%), Gaps = 2/458 (0%)
Query: 21 FDPTAVVAEPVPPVVTENG--HELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKE 78
DP +V++P+P E E+EIVLG+NVH +C +VTEPEADDEFTGDKE
Sbjct: 13 IDPDLLVSDPLPVATYNVAVVAEYGDLGGEREIVLGRNVHTTCLAVTEPEADDEFTGDKE 72
Query: 79 AYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSR 138
AYMA VLARYRKTL+ERTKHHLGYPYNLDFDYGAL QLQHFSINNLGDPFIESNYGVHSR
Sbjct: 73 AYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSR 132
Query: 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF 198
QFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF
Sbjct: 133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF 192
Query: 199 KAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQ 258
KAARMYRMECVKVD L+SGEIDCADFKAKLL NKDKPAIINVNIGTTVKGAVDDLDLVI+
Sbjct: 193 KAARMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIK 252
Query: 259 TLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQ 318
TLEE GF+QDRFYIHCDGALFGLMMPFVK+APKV+FKKPIGSVSVSGHKFVGCPMPCGVQ
Sbjct: 253 TLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQ 312
Query: 319 ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAH 378
ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY+GFQKEVQKCLRNAH
Sbjct: 313 ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAH 372
Query: 379 YLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDD 438
YLKDRL +AGISAMLNELSSTVVFERP+DEEFVRRWQLACQGNIAHVVVMP+VTI+KLD
Sbjct: 373 YLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLACQGNIAHVVVMPSVTIEKLDY 432
Query: 439 FLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
FL EL+E RSTWY DGK QPPC+A D+G ENC+C+ HK
Sbjct: 433 FLKELVEKRSTWYPDGKVQPPCVAKDVGEENCLCSLHK 470
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 747 bits (1931), Expect = 0.0
Identities = 284/374 (75%), Positives = 331/374 (88%)
Query: 74 TGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNY 133
TG+++AYMA +LA Y K L E++ H GYPYNLDFDYG L+QL +SINNLGDPFIESNY
Sbjct: 1 TGERDAYMADILASYDKLLAEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNY 60
Query: 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES 193
GVHSRQFEVGVLDWFARLWELE +EYWGYIT CGTEGNLHGILVGREVFPDGILYASRES
Sbjct: 61 GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRES 120
Query: 194 HYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL 253
HYSVFKAARMYRME VKV L SGEID D + L +N+DKPAI+NVNIGTTVKGAVDDL
Sbjct: 121 HYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDL 180
Query: 254 DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM 313
D +++ L+E G+T+DRFYIHCDGALFGLMMPFV +AP+V+F+KPIGSVSVSGHKF+GCPM
Sbjct: 181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM 240
Query: 314 PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373
PCGV +TR +H+ LS NVEYL SRDATIMGSRNGHAP++LWYTL RKGY+G +++VQ C
Sbjct: 241 PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHC 300
Query: 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTI 433
+RNAHYLKDRL +AG++ LNELSSTVVFERP DE F+++WQLAC+G+IAHVVVMPNVT+
Sbjct: 301 MRNAHYLKDRLTEAGLTCRLNELSSTVVFERPMDEAFIKKWQLACEGDIAHVVVMPNVTV 360
Query: 434 DKLDDFLNELIENR 447
+KLD+F+ EL+E R
Sbjct: 361 EKLDEFVEELVEVR 374
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 474 bits (1222), Expect = e-166
Identities = 161/365 (44%), Positives = 232/365 (63%), Gaps = 3/365 (0%)
Query: 85 LARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGV 144
+ + L ++GYP DFDY AL + FSINN GDP+ +SNY ++S FE V
Sbjct: 11 IEDFWLYLRHNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDV 70
Query: 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY 204
+++FA L+++ NE WGYITN GTEGNL+G + RE+FPDG LY S+++HYSV K AR+
Sbjct: 71 MNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL 130
Query: 205 RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG 264
R++ + L +GEID D +K+ +NK++P II NIGTT+ GA+D++ + + L++ G
Sbjct: 131 RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIG 190
Query: 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH 324
D +YIH D AL G+++PFV P SF I S+++SGHKF+G PMPCG+ + + ++
Sbjct: 191 I--DDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY 248
Query: 325 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ +S +V+Y+ SRD TI GSRNGH + LW + G KG ++ VQ CL A Y DRL
Sbjct: 249 VERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRL 308
Query: 385 LDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELI 444
GI A N S TVVF P E ++W LA GN AH++ MP+ ++D ++ELI
Sbjct: 309 QANGIPAWRNPNSITVVFPCP-SERIWKKWHLATSGNQAHIITMPHHNKQQIDSLIDELI 367
Query: 445 ENRST 449
+
Sbjct: 368 FDLKN 372
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 164 bits (418), Expect = 1e-45
Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 45/340 (13%)
Query: 122 NNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV 181
NLGDP + + E V++ + L E G T+ GTE NL +L RE
Sbjct: 88 KNLGDPDESPA----AAELEERVVNMLSDLLGAPE-EASGTFTSGGTEANLLALLAARER 142
Query: 182 FPD------------GILYASRESHYSVFKAARMYRMECVKVDCLISGE--IDCADFKAK 227
+ + S +H+S KAAR + +V + + ID +
Sbjct: 143 WRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP-TVPTDYRIDVDALEEA 201
Query: 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287
+ +N ++ GTT G++DD++ + EE G ++H D A G ++PF++
Sbjct: 202 IDENTIGGVVV-GTAGTTDTGSIDDIEELADIAEEYGI-----WLHVDAAFGGFLLPFLE 255
Query: 288 KAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS---RDAT 341
+ F + + S++V GHK+ P+ CGV + R +L YL + T
Sbjct: 256 PDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFT 315
Query: 342 IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTV 400
I+GSR G + L+ L R G +G++K + + L A YL + L G ++NE V
Sbjct: 316 ILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIV 375
Query: 401 VFERPQDEEFVRR---------WQLA---CQGNIAHVVVM 428
F DE+ + WQ+ +A V
Sbjct: 376 AFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGT 415
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 123 bits (311), Expect = 2e-31
Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 39/348 (11%)
Query: 119 FSINNLGDPFIESNYGVH--SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGIL 176
F NLGDP G+ +++ E V+ L L + +GYI + GTE N+ +
Sbjct: 43 FIETNLGDP------GLFPGTKKIEEEVVGSLGNL--LHLPDAYGYIVSGGTEANIQAVR 94
Query: 177 VGREVFPDG------ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ 230
+ + + I+ S +H+S KAA M +E +D D + +
Sbjct: 95 AAKNLAREEKRTPNIIVPES--AHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152
Query: 231 NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA- 289
N I+ + GTT G +DD++ + + E+G Y+H D A G ++PF+KK
Sbjct: 153 NTI--GIVGI-AGTTELGQIDDIEELSKIALENGI-----YLHVDAAFGGFVIPFLKKGY 204
Query: 290 --PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLAS-RDATIMG 344
P F P + S+++ HK P+P G + R ++ LS + YL + ATI G
Sbjct: 205 NPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITG 264
Query: 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER 404
+R+G + + + G +G++K V +C+ N YL + L G ++ + + V FE
Sbjct: 265 TRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEV 324
Query: 405 PQDEEFVRR-----WQL-ACQGNIA-HVVVMPNVTIDKLDDFLNELIE 445
EE ++ W + + A +VVMP+VT + +++FL +L E
Sbjct: 325 DDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 118 bits (299), Expect = 7e-30
Identities = 81/380 (21%), Positives = 141/380 (37%), Gaps = 74/380 (19%)
Query: 101 GYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYW 160
G+ +D L ++ + N + + ES + + E V++W A+L+ L + +
Sbjct: 4 GFVTTMDPP-ALLLEMLTSAKNAIDFTWDESP---AATEMEAEVVNWLAKLFGLPSEDAD 59
Query: 161 GYITNCGTEGNLHGILVGR------------EVFPDGILYASRESHYSVFKAARMYRMEC 208
G T+ G+E NL +L R ++ S ++H SV KAA ++
Sbjct: 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKV 119
Query: 209 VKVDCLISGEIDCADFKAKLLQNKDK---PAIINVNIGTTVKGAVDDLDLVIQTLEESGF 265
V G +D +A + ++K + P ++ GTT GA+D L+ + E+
Sbjct: 120 RLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD- 178
Query: 266 TQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 325
++H D A G ++PF + + + S+SV HK+ P+ C + R
Sbjct: 179 ----LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---- 230
Query: 326 NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLL 385
L LW TL R G G+ + + + + A YL + +
Sbjct: 231 -ALK------------------------LWATLRRFGRDGYGEHIDRIVDLAKYLAELIR 265
Query: 386 -DAGISAMLNELSSTVVFERPQDEEFV--------------RRWQLA--CQGNIAH---V 425
D G + S V F R + + W + G V
Sbjct: 266 ADPGFELLGEPNLSLVCF-RLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFV 324
Query: 426 VVMPNVTIDKLDDFLNELIE 445
V P T D D L ++
Sbjct: 325 VTNPLTTRDDADALLEDIER 344
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 110 bits (278), Expect = 1e-26
Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 42/341 (12%)
Query: 123 NLGDPFIESNYGVH--SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE 180
NLGDP G+ + + E ++ L L + +GYIT+ GTE N+ + R
Sbjct: 47 NLGDP------GLFPGTAKLEEEAVEMLGEL--LHLPDAYGYITSGGTEANIQAVRAARN 98
Query: 181 V----FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPA 236
+ P+ ++ S +H+S KAA M +E + +D + + N
Sbjct: 99 LAKAEKPNIVVPES--AHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTI--G 154
Query: 237 IINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK- 295
I+ + GTT G VD I L + ++H D A G ++PF+ P F
Sbjct: 155 IVGI-AGTTELGQVDP----IPELSKIALENG-IFLHVDAAFGGFVIPFLDDPPNFDFSL 208
Query: 296 KPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRD-ATIMGSRNGHAPIF 353
+ S+++ HK P+P G + R +++ L+ + YL S+ AT+ G+R+G
Sbjct: 209 PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAA 268
Query: 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEE 409
+ + G +G++K V++C+ N +L + L + G I +LN V F+ P +E
Sbjct: 269 TYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLN----IVAFDDPNPDE 324
Query: 410 FVRR-----WQLACQGN--IAHVVVMPNVTIDKLDDFLNEL 443
+ W+++ +V MP+VT + +++FL +L
Sbjct: 325 VREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDL 365
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 99.0 bits (247), Expect = 9e-23
Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 55/339 (16%)
Query: 88 YRKTLMERTKH------HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFE 141
RK +M H +P + L + +IN G + S + E
Sbjct: 26 IRKNIMPGVTTWHSPNFHAYFPAGNSY-PSLLGDMLSDAINCNGFTWESSPA---CTELE 81
Query: 142 VGVLDWFARLWEL-----ENNEYWGYITNCGTEGNLHGILVGR-----EVFPDG------ 185
V+DW A++ L + E G + +E NL +L R + G
Sbjct: 82 NVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPSLGK 141
Query: 186 -ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK---PAIINVN 241
+ Y S ++H S+ KAA + +E ++ +G++ D + + ++K+ P +
Sbjct: 142 LVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCAT 201
Query: 242 IGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFG--LMMPFVKKAPKVSFKKPIG 299
+GTT GA D L + + ++H D A G + P + +
Sbjct: 202 LGTTGSGAFDPLQELGDICNKYDL-----WLHVDAAYAGSAFICPEF--RHWLFGIERAD 254
Query: 300 SVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLAS-----------RDATIMGSR 346
S S + HK++ + C R + L N EYL D I SR
Sbjct: 255 SFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSR 314
Query: 347 NGHAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
I LW+ L G +G Q ++++ + A Y + +
Sbjct: 315 --RFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALV 351
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 61.7 bits (150), Expect = 3e-10
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 6/182 (3%)
Query: 242 IGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP-IG 299
+GTT G +D+ + L+E + T IH D A G + PFV + F+ P +
Sbjct: 194 LGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVK 253
Query: 300 SVSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDAT--IMGSRNGHAPIFLW 355
S++VSGHK+ G I R E L +V YL + T + SR + I +
Sbjct: 254 SINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQY 313
Query: 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQ 415
Y R G +G++K +Q L A YL + + G ++++ S + ++ +
Sbjct: 314 YNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYT 373
Query: 416 LA 417
L
Sbjct: 374 LY 375
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 47.8 bits (114), Expect = 9e-06
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 190 SRESHYSVFKAARMY---RMECVKVDCLISGEIDCADFKAKLLQNKD---KP-AIINVNI 242
S HYS+ KAA + R + + + ID + K + + KP AI+ V
Sbjct: 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGV-A 273
Query: 243 GTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302
GTT G +D LD + +E G + H D A G + + + SV+
Sbjct: 274 GTTETGNIDPLDEMADIAQELG-----CHFHVDAAWGGATLLSNTYRHLLKGIERADSVT 328
Query: 303 VSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA-------SRD---ATIMGSRNGHAPI 352
+ HK + PM G+ + + L S +E+ A S+D T+ GSR G A +
Sbjct: 329 IDAHKQLYVPMGAGMVLFKDPA---LMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-M 384
Query: 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKD 382
++ L+ G KG++ + + + A Y D
Sbjct: 385 LVYAGLHIIGRKGYELLIDQSIEKAKYFAD 414
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 37.8 bits (87), Expect = 0.011
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 37/234 (15%)
Query: 139 QFEVGVLDWFARLWELENN-----EYWGYITNCGTEGNLHGIL---------VGREVFPD 184
+ E+ VLDW A+L +L ++ G I G E L +L VG+ + P
Sbjct: 170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQ 229
Query: 185 GILYASRESHYSVFKAARM-----YRMECVKVDCLISGEIDCADFKAKLLQNKDK---PA 236
++Y S ++H S KA + + +K D + + + + + K P
Sbjct: 230 LVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF 289
Query: 237 IINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFG--LMMPFVKKAPKVSF 294
I +GTT AVD L + ++ G ++H D A G + P +K +
Sbjct: 290 FICATVGTTSSAAVDPLVPLGNIAKKYG-----IWLHVDAAYAGNACICPEYRKF--IDG 342
Query: 295 KKPIGSVSVSGHKFVGCPMPCGVQIT--RMEHINVLSSNVEYL----ASRDATI 342
+ S +++ HK++ C R I+ L +N EYL + +D +
Sbjct: 343 IENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVV 396
>gnl|CDD|227830 COG5543, COG5543, Uncharacterized conserved protein [Function
unknown].
Length = 1400
Score = 36.5 bits (84), Expect = 0.038
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 7/133 (5%)
Query: 326 NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLL 385
N L + + + + + + + F K+ ++ +++ L
Sbjct: 1230 NFLWDDDSEIREKASFYLNKNFIQTADWEYNRNTSVTALIFTKKFVDVFTSSEVVEELCL 1289
Query: 386 DAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIE 445
+ LNE + +F +D +F+ Q A H++ M +T D ++ L
Sbjct: 1290 --QLFQYLNEYAKNCLFTIEKDNQFINELQKA-----MHILNMIKLTSKCYKDQIHHLKS 1342
Query: 446 NRSTWYEDGKRQP 458
+ED K P
Sbjct: 1343 ALLEHFEDFKDSP 1355
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 34.9 bits (80), Expect = 0.10
Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 53/319 (16%)
Query: 102 YPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENN---- 157
YP N G L ++ +N +G +I S + + E+ VLDW A+L L
Sbjct: 89 YPSNSSVA-GFLGEMLSAGLNIVGFSWITSP---AATELEMIVLDWLAKLLNLPEQFLST 144
Query: 158 -EYWGYITNCGTEGNLHGIL---------VGREVFPDGILYASRESHYSVFKA---ARMY 204
G I +E L +L VG+ ++YAS ++H ++ KA A ++
Sbjct: 145 GNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIH 204
Query: 205 RMEC--VKVDC--------LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLD 254
C +K D + E D + L+ P + +GTT AVD L
Sbjct: 205 PENCRLLKTDSSTNYALAPELLSEAISTDLSSGLI-----PFFLCATVGTTSSTAVDPLL 259
Query: 255 LVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMP 314
+ + + +G + H D A G + + + S +++ HK+
Sbjct: 260 ELGKIAKSNG-----MWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD 314
Query: 315 CGVQIT--RMEHINVLSSNVEYL---ASRDATIMGSRNGHAPI---F----LWYTLNRKG 362
C + R I LS+N E+L AS+ +++ ++ P+ F LW L G
Sbjct: 315 CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYG 374
Query: 363 YKGFQKEVQKCLRNAHYLK 381
+ Q ++ ++ A +
Sbjct: 375 VENLQSYIRNHIKLAKEFE 393
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 33.1 bits (76), Expect = 0.16
Identities = 42/180 (23%), Positives = 59/180 (32%), Gaps = 20/180 (11%)
Query: 146 DWFARLWELENNEYWGYITNCGTEGNLHGILV----GREVFPDGILYASRESHYSVFKAA 201
+ ARL L+ GT N +L G EV S Y V
Sbjct: 7 EKLARL--LQPGNDKAVFVPSGTGANEAALLALLGPGDEV--IVDANGH-GSRYWVAAEL 61
Query: 202 RMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE 261
+ V VD G +D A + L+ K A+I + TT G + L + + +
Sbjct: 62 AGAKPVPVPVDDAGYGGLDVAILEE--LKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK 119
Query: 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITR 321
E G + D A G P V+ S HK +G GV I +
Sbjct: 120 EYG-----ILLLVDAASAGGASPAPGVLIPEGG---ADVVTFSLHKNLGGEG-GGVVIVK 170
>gnl|CDD|153395 cd07925, LigA_like_1, The A subunit of Uncharacterized proteins
with similarity to Protocatechuate 4,5-dioxygenase
(LigAB). The proteins of unknown function in this
subfamily are similar to the A subunit of the
Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB
belongs to the class III extradiol dioxygenase family,
composed of enzymes which use a non-heme Fe(II) to
cleave aromatic rings between a hydroxylated carbon and
an adjacent non-hydroxylated carbon. Dioxygenases play
key roles in the degradation of aromatic compounds. PCA
4,5-dioxygenase catalyzes the oxidization and
subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic
acid), which is an intermediate in the breakdown of
lignin and other compounds.
Length = 106
Score = 30.5 bits (69), Expect = 0.49
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 54 GKNVHASCFSVTEPEADDEFTGDKEAYM 81
G ++ CFS + + F D+EAY
Sbjct: 13 GYALNKMCFSFNDAANREAFLADEEAYC 40
>gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating). This
apparently ubiquitous enzyme is found in bacterial,
mammalian and plant sources. The enzyme catalyzes the
reaction: GLYCINE + LIPOYLPROTEIN =
S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of
the glycine decarboxylase multienzyme complex (GDC)
consisting of four proteins P, H, L and T. Active site
in E.coli is located as the (K) residues at position 713
of the SEED alignment [Energy metabolism, Amino acids
and amines].
Length = 939
Score = 32.2 bits (73), Expect = 0.67
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 165 NCGTEGNLHGILVGREVFPD------GILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
N G +G G+ V R I +H + +A M M+ V V+C G
Sbjct: 553 NSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGN 612
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTT 245
ID D K K Q+ D+ A + V +T
Sbjct: 613 IDLVDLKNKAEQHGDELAAVMVTYPST 639
>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 32.4 bits (75), Expect = 0.70
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 201 ARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAII 238
A M M+ V V C +G ID D +AK ++ D A I
Sbjct: 607 AVMAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAI 644
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 30.9 bits (71), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV 411
G +G ++ ++ + AHYL +RL + G +F+ P EFV
Sbjct: 346 GPEGLRELAEQNHQKAHYLAERLAEIGG---------VELFDGPFFNEFV 386
>gnl|CDD|139527 PRK13378, PRK13378, protocatechuate 4,5-dioxygenase subunit
alpha; Provisional.
Length = 117
Score = 29.3 bits (66), Expect = 1.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 61 CFSVTEPEADDEFTGDKEAYMA 82
CFS + F D+ AY
Sbjct: 31 CFSFNDAANRAAFLADEAAYCR 52
>gnl|CDD|171585 PRK12566, PRK12566, glycine dehydrogenase; Provisional.
Length = 954
Score = 30.7 bits (69), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 200 AARMYRMECVKVDCLISGEIDCADFKAK 227
+A+M M V V+C G +D D KAK
Sbjct: 607 SAQMAGMRVVIVECDPDGNVDLDDLKAK 634
>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase.
Aminoacylation of tRNA(Cys) with Cys, and cysteine
biosynthesis in the process, happens in
Methanocaldococcus jannaschii and several other archaea
by misacylation of tRNA(Cys) with O-phosphoserine (Sep),
followed by modification of the phosphoserine to
cysteine. In some species, direct tRNA-cys
aminoacylation also occurs but this pathway is required
for Cys biosynthesis. Members of this protein catalyze
the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 29.4 bits (66), Expect = 3.8
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATI 342
MP K F + SGHK + PCGV E +++ Y ++ +
Sbjct: 190 MPVSAKEIGADF------IVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVEL 243
Query: 343 MGSRNGHAPIFLW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389
+G + API + + K + +EV + + L D G
Sbjct: 244 LGCTSRGAPIVTMMASFPHVVERVKRWDEEV----KKTRWFVAELEDIGF 289
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 29.5 bits (67), Expect = 3.9
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 55/177 (31%)
Query: 162 YITNCGTEGNLHGILVGREVFPDGILYASRE---------SHYSV-----FKAARMYRME 207
T+ GTE + I L A E H +V + Y++
Sbjct: 63 IFTSGGTESDNTAIK--------SALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVT 114
Query: 208 CVKVDCLISGEIDCADFKAKLLQNKDKPAII-----NVNIGTTVKGAVDDLDLVIQTLEE 262
+ VD G +D + +A + D A++ N GT I +EE
Sbjct: 115 YLPVDE--EGRLDLEELRAAI---TDDTALVSVMWANNETGT------------IFPIEE 157
Query: 263 SG-FTQDR-FYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGV 317
G ++R H D + V K P + I +S+SGHK G P GV
Sbjct: 158 IGEIAKERGALFHTDA------VQAVGKIPIDLKEMNIDMLSLSGHKLHG---PKGV 205
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum) have
a conserved pathway from two molecules geranylgeranyl-PP
to one of all-trans-lycopene. Members of this family are
the enzyme pytoene desaturase (also called phytoene
dehydrogenase). This model does not include the region
of the chloroplast transit peptide in plants. A closely
related family, excluded by this model, is zeta-carotene
desaturase, another enzyme in the same pathway
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 453
Score = 29.4 bits (66), Expect = 4.1
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 23 PTAVVAEPVPPVVTENGHELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKEAYMA 82
P + +P+ +T G E++ + KEIVL ++ F + + E F +AY++
Sbjct: 211 PPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVS 270
Query: 83 GVLARYRKTLM 93
+ K L+
Sbjct: 271 AMPVDIFKLLL 281
>gnl|CDD|239095 cd02412, 30S_S3_KH, K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3
is part of the head region of the 30S ribosomal subunit
and is believed to interact with mRNA as it threads its
way from the latch into the channel. The KH motif is a
beta-alpha-alpha-beta-beta unit that folds into an
alpha-beta structure with a three stranded beta-sheet
interupted by two contiguous helices. In general, KH
binds single-stranded RNA or DNA. It is found in a wide
variety of proteins including ribosomal proteins,
transcription factors and post-transcriptional modifiers
of mRNA.
Length = 109
Score = 27.8 bits (63), Expect = 4.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD 407
WY ++K Y E K +R ++K +L AGIS + ER D
Sbjct: 21 WYA-DKKDYAELLHEDLK-IRK--FIKKKLKKAGISR--------IEIERKAD 61
>gnl|CDD|218351 pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase. Members of
this family are thought to be Formiminotransferase-
cyclodeaminase enzymes EC:4.3.1.4. This domain is found
in the C-terminus of the bifunctional animal members of
the family.
Length = 176
Score = 28.3 bits (64), Expect = 6.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386
T+ +K Y+ ++E+++ L A L++ LL
Sbjct: 39 NLTIGKKKYEDVEEEMKEILEKAEELREELLA 70
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface.
Length = 361
Score = 28.5 bits (64), Expect = 7.2
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATI 342
MP K F + SGHK + P GV T E +++ + ++ +
Sbjct: 183 MPVSGKELGADF------IVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVEL 236
Query: 343 MGSRNGHAPI 352
+G AP+
Sbjct: 237 LGCTLRGAPL 246
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 28.8 bits (65), Expect = 7.3
Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 29/235 (12%)
Query: 108 FDYGALAQLQHFSINNLGDPFIESN----YGVHSRQFEVGVLDWFARLW--ELENNEYWG 161
D A +Q ++ + + + N G H+ E L AR N +
Sbjct: 26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD 85
Query: 162 YI--TNCGTEG-NLHGILVGREVFP-DGILYASRESHYSVFKAARMYR----MECVKVDC 213
I T TE NL +GR + P D I+ S H+S + + +
Sbjct: 86 EIVFTRGTTEALNLVARGLGRSLKPGDEIVV-SDLEHHSNIVPWQELAKRTGAKVRVIPL 144
Query: 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIH 273
G +D + + K ++ ++ + V G V+ + + + E G +
Sbjct: 145 DDDGLLDLDALEKLI---TPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGA-----LVL 196
Query: 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL 328
D A +P + F ++ SGHK++ P GV R E + L
Sbjct: 197 VDAAQAAGHLPIDVQELGCDF------LAFSGHKWLLGPTGIGVLYVRKELLEEL 245
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 28.5 bits (65), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 333 EYLASRDATIMG 344
+YLA RDA MG
Sbjct: 132 DYLAKRDAEWMG 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,536,296
Number of extensions: 2410602
Number of successful extensions: 2006
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1975
Number of HSP's successfully gapped: 37
Length of query: 476
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 375
Effective length of database: 6,457,848
Effective search space: 2421693000
Effective search space used: 2421693000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)