RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011844
(476 letters)
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 500 bits (1289), Expect = e-175
Identities = 155/469 (33%), Positives = 266/469 (56%), Gaps = 17/469 (3%)
Query: 6 RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
++ + PEV+ R+VP RE+ ++T ++L ++ V +++P+YGI D F
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60
Query: 66 WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGII 125
++RV+LA G+++ LGI PIVT+G+++QLL GS+II++D EDR Q++ +
Sbjct: 61 FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120
Query: 126 IAIGEAVAYVLSGMYGS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISL 184
+ EA ++L G +G + A+L+I+QL GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179
Query: 185 FIATNICENIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
FIA + + I+ ++ +P T N + A++ I K + + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239
Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
++ +++AT+++F IV+YF+ RV +P+ + +GSYPI+ Y SN+PIIL AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298
Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHA 363
+ ++++ LG++ P+ G Y+ P ++ + NP A
Sbjct: 299 IQLWARVL-----DRLGHPWLGRF-----DPTTGSPISGFVLYVIPPRNIFSVIDNPVRA 348
Query: 364 LFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQKELNRYIPT 421
+ YL+ + LF W+E++G AR +A+QL+ + +PG R L+K L RYIP
Sbjct: 349 IVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPY 408
Query: 422 AAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 470
+G + + + VLADF+GA+G+GTGILL V I+Y+++E +E+ +E
Sbjct: 409 VTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 491 bits (1267), Expect = e-172
Identities = 158/465 (33%), Positives = 255/465 (54%), Gaps = 42/465 (9%)
Query: 8 LHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWM 67
+ + P L +PEV+ +++ F+EK+ +T I L ++ + + +Y + F +
Sbjct: 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFW 59
Query: 68 RVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIA 127
+ I AS GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL G QKLL II+
Sbjct: 60 QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMC 119
Query: 128 IGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA 187
EAV +V +G +G L A L+I+Q+ F II+I LDE++ K YG+GSGI LFIA
Sbjct: 120 FVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIA 175
Query: 188 TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTN 247
+ + I A P EG + + LI N+ +
Sbjct: 176 AGVSQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAP 212
Query: 248 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFI 307
++ T+++FL+V+Y + RV +P+ +G G YPIK Y SN+P+IL +AL +N+
Sbjct: 213 IIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLW 272
Query: 308 SQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYL 367
+Y + +LG ++ V GIAYY++ P L+ + ++P HA+ Y+
Sbjct: 273 GLALY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLSSVISDPIHAIVYM 320
Query: 368 VFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQKELNRYIPTAAAF 425
+ M+ C +F W+E +G + +AK++ M + G R E ++ L RYIP
Sbjct: 321 IAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVM 380
Query: 426 GGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 470
+G L +A+F+GA+G GTG+LL V+I+Y+ +E +ER SE
Sbjct: 381 SSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSE 425
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 492 bits (1268), Expect = e-172
Identities = 322/474 (67%), Positives = 393/474 (82%), Gaps = 3/474 (0%)
Query: 4 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
+ L +++PF LPE+Q +RK+ F+EKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 61
Query: 64 FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
FYWMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV + +DRAL NGAQKL G
Sbjct: 62 FYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNGAQKLFG 120
Query: 124 IIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGIS 183
+II IG+++ YV++GMYG +++G G +LI +QL AG+IV+ LDELLQKGYGLGSGIS
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 180
Query: 184 LFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
LFIATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALREAFYRQNLP
Sbjct: 181 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240
Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
N+ NL+AT+ +F +VIYFQGFRV LP++S RGQ +YPIKLFYTSN+PIILQSALVSN
Sbjct: 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 300
Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPSSLADMAANPFH 362
LY ISQ++ R+SGN V+LLG W ++ G + PVGG+ +Y++ P S + +P H
Sbjct: 301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVH 360
Query: 363 ALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTA 422
A+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRE ++ ELNRYIPTA
Sbjct: 361 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 420
Query: 423 AAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476
AAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE++ E+G G
Sbjct: 421 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMGA 473
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 430 bits (1107), Expect = e-148
Identities = 147/474 (31%), Positives = 239/474 (50%), Gaps = 15/474 (3%)
Query: 3 GGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIH---STT 59
GFR++ +V+P L LPEV+ K+PF +K++YT+ + I+L Q PL G+ +
Sbjct: 2 SGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPN 60
Query: 60 GADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQ 119
DP Y++R + T++E G+ P ++SGL++QLLAG K+I+V+ ++ DR L
Sbjct: 61 VNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLT 120
Query: 120 KLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLG 179
K+ I+ + ++ +G +G L V LI QL AGI L E++ KG+G
Sbjct: 121 KVFAIVQYVILTNIFIFAGYFGD--DLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFS 178
Query: 180 SGISLFIATNICENIIWKAFSPTTINSGRG--AEFEGAVIALFHLLITRNDK-VRALREA 236
SG + I N++ F + I G E +GA+I L L +++ + + A
Sbjct: 179 SGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISA 238
Query: 237 FYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIIL 296
F R LPN+T + + I +IV Y Q RV LP+RS ARG YPIKL YT + ++
Sbjct: 239 FNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLF 298
Query: 297 QSALVSNL----YFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSS 352
++ + + + QL+ + + ++G + + VP ++ S
Sbjct: 299 SYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHY--ENANNLLAVPTFPLSLLAPPTSF 356
Query: 353 LADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQ 412
+ P + Y F+L F+ W +SGSSARDVA + K+Q + + G RE N+
Sbjct: 357 FKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVA 416
Query: 413 KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 466
KELN+ IP AA G + +TV+ + +G G GI++ + + E E
Sbjct: 417 KELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIE 470
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 4e-09
Identities = 88/577 (15%), Positives = 176/577 (30%), Gaps = 200/577 (34%)
Query: 7 VLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLF--IFL-------VCSQLPLYGIHS 57
LV FL ++ + + F + V+ ++ F +L + ++L +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQ-VLNLCLTEFENCYLEGNDIHALAAKLL--QEND 113
Query: 58 TTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGS-KIIEV-----DNNV--- 108
TT ++ + + + + S L + G+ +++ + + +
Sbjct: 114 TTLVKTKELIKNYITAR--IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 109 --RE--------DRALLNGAQKLLGIIIAIGEA-----------------------VAYV 135
R+ L+ + + L +I Y+
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 136 LSGMYGSVNQLGVGNAILIIVQLCFAGIIVIC---------LDELLQKGYGLGSGI--SL 184
LS S +GV +QL A +V L L+ G G+ ++
Sbjct: 232 LSIPI-SCPLIGV-------IQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 185 FIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP- 243
IA W++F + A+ LF + VR EA+ +LP
Sbjct: 282 AIAETDS----WESFFVSVRK---------AITVLFFI------GVRCY-EAYPNTSLPP 321
Query: 244 ------------------NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIK 285
+++NL + + LP + I
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYV----NKTNSHLPAGKQVE--------IS 369
Query: 286 LFYTSNMPIILQSALVS----NLY-FISQLMYRRY---SGNFFVNLLGKWKESEYS---- 333
L N ++ +VS +LY L R+ SG L + + +S
Sbjct: 370 LV---NGA---KNLVVSGPPQSLYGLNLTL--RKAKAPSG------LDQSR-IPFSERKL 414
Query: 334 --GGQYVPVGGIAYYITAP--SS-LADMAANPFHALFYLVFMLSACAL----FSKTWIEV 384
+++P + +P S L + L +A + + T+
Sbjct: 415 KFSNRFLP-------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD-TF--- 463
Query: 385 SGSSAR----DVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFG--GMC-IGALT-VL 436
GS R +++++ + + +P E Q + + FG G +G LT
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL----DFGPGGASGLGVLTHRN 519
Query: 437 ADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF 473
D G+G +++A T + + GF
Sbjct: 520 KD-----GTGVRVIVA--------GTLDINPDDDYGF 543
Score = 52.0 bits (124), Expect = 3e-07
Identities = 64/347 (18%), Positives = 107/347 (30%), Gaps = 114/347 (32%)
Query: 198 AFS--PTTINSGRGAEFEGAVIALFHLLITRNDKVRA--LREAFYRQNLPNVTNLLA--- 250
A+S P T++ G E LL+ A L+E F + LP T A
Sbjct: 3 AYSTRPLTLSHG---SLE------HVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADD 52
Query: 251 --TVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFIS 308
T L V F G+ V S + G + +L L F +
Sbjct: 53 EPTTPAEL-VGKFLGY-----VSSLVEPSKVGQFDQ----------VLNLCLT---EFEN 93
Query: 309 QLMYRRYSGN----FFVNLLGKWKESEYSGGQYVPVGGIAYYITA------------PSS 352
+ GN LL + ++ + + I YITA S+
Sbjct: 94 CYL----EGNDIHALAAKLLQE-NDTTLVKTKEL----IKNYITARIMAKRPFDKKSNSA 144
Query: 353 LADMAANPFHALFYLVF----MLSAC-----ALFS------KTWIEVSGSSARDVAKQLK 397
L A +A +F L+ I+ S + ++ +
Sbjct: 145 LFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 398 EQQMVMPGHREANLQKELNR--------YIPTAA-AFGGMCIGALTVLADFM-------- 440
+ + V + N+ + L Y+ + + IG + LA ++
Sbjct: 204 DAEKVFT--QGLNILEWLENPSNTPDKDYLLSIPISCPL--IG-VIQLAHYVVTAKLLGF 258
Query: 441 ----------GAIGSGTGILLAVTI-IYQYFETFEK--ERASELGFF 474
GA G G++ AV I +E+F +A + FF
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 36.2 bits (83), Expect = 0.031
Identities = 44/292 (15%), Positives = 74/292 (25%), Gaps = 115/292 (39%)
Query: 169 DELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRND 228
D + YG F +I N +P + G E +G I + +
Sbjct: 1650 DNHFKDTYG-------FSILDIVIN------NPVNLTIHFGGE-KGKRIRENYSAMIFET 1695
Query: 229 KVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFY 288
V + + + N +T F R ++G L
Sbjct: 1696 IVDGKLKT---EKIFKEINEHSTSYTF--------------------RSEKG----LLSA 1728
Query: 289 TSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL--------LGKWKESEYSGGQYVPV 340
T Q AL + + + + LG EY+
Sbjct: 1729 TQF----TQPALTL----MEKAAFEDLKSKGLIPADATFAGHSLG-----EYA------- 1768
Query: 341 GGIAYYITAPSSLADMAANPFHALFYLVF------------------MLSACALF-SKTW 381
A +SLAD +L +VF A+ +
Sbjct: 1769 --------ALASLAD--VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 382 IEVSGSSARDVAKQLKE---------------QQMVMPGHREA--NLQKELN 416
S + + V +++ + QQ V G A + LN
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 44.4 bits (106), Expect = 5e-05
Identities = 57/311 (18%), Positives = 117/311 (37%), Gaps = 65/311 (20%)
Query: 20 EVQSADRKVP-FREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL------- 71
+ QSA + + ++++ + +L +F + S +P+ GI + A R +
Sbjct: 1 DFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMF 60
Query: 72 ---ASNRGTVMELGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIII 126
A +R ++ LGI P +++ +++QLL + E+ R ++ + +++
Sbjct: 61 SGGALSRASIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVL 120
Query: 127 AIGEAVAYVL-----SGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSG 181
AI +++ GM G V G +V L + ++ L E + + G+G+G
Sbjct: 121 AIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE-RGIGNG 179
Query: 182 ISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQN 241
IS+ I I A A+ RQ
Sbjct: 180 ISIIIFAGIV------------------AGLPPAIAHTIEQA---------------RQG 206
Query: 242 LPNVTNLLATVLIFLIVIYF-----QGFRVVLPV------RSKNARGQQGSY-PIKLFYT 289
+ LL ++ V +F +G R + V + + Q ++ P+K+
Sbjct: 207 DLHFLVLLLVAVLVFAVTFFVVFVERGQRRI-VVNYAKRQQGRRVYAAQSTHLPLKVNMA 265
Query: 290 SNMPIILQSAL 300
+P I S++
Sbjct: 266 GVIPAIFASSI 276
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 42.6 bits (101), Expect = 2e-04
Identities = 61/319 (19%), Positives = 119/319 (37%), Gaps = 63/319 (19%)
Query: 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASN---------------R 75
R+++I+T ++L +F + +P+ G++ + F + R
Sbjct: 15 RDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSR 74
Query: 76 GTVMELGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVA 133
+V + +TP +T+ +++QLLA + E+ E R + L ++I +A
Sbjct: 75 FSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFF 134
Query: 134 YVLS-----GMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIAT 188
S + + +L + + + ++ L E + + G+G+GIS+ I
Sbjct: 135 VSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITE-KGIGNGISILIFA 193
Query: 189 NICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNL 248
I P+ I + G + L + +
Sbjct: 194 GIVARY------PSYI----RQAYLGGLNLLEWIFLI----------------------A 221
Query: 249 LATVLIFLIVIYFQGFRVVLPV----RSKNAR--GQQGSY-PIKLFYTSNMPIILQSALV 301
+A + IF I++ Q R + + R R G +Y PIK+ +PII SA+V
Sbjct: 222 VALITIFGIILVQQAERRI-TIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIV 280
Query: 302 SNLYFISQLMYRRYSGNFF 320
S I+ + N F
Sbjct: 281 SIPSAIASITNNETLKNLF 299
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 41.4 bits (98), Expect = 6e-04
Identities = 56/303 (18%), Positives = 111/303 (36%), Gaps = 69/303 (22%)
Query: 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL----------ASNRGTVME 80
R+K I+T++ I+ + S +P+ GI+ D + R TV
Sbjct: 15 RQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFA 74
Query: 81 LGITPIVTSGLVMQLLAGSKIIEVDNNVRED----RALLNGAQKLLGIIIAIGEAVAYVL 136
LG+ P +++ ++MQLL + I + +E+ R +N K L + +A +++
Sbjct: 75 LGVMPYISASIMMQLLTVA-IPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAF 133
Query: 137 -------SGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATN 189
V G+ ++ ++ L + ++ + + + + G+G+G SL I
Sbjct: 134 WIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITE-KGIGNGASLIIFAG 192
Query: 190 ICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLL 249
I A F AVI + + + LL
Sbjct: 193 IV------------------ANFPNAVIQFYEKV---------------KTGDIGPLTLL 219
Query: 250 ATVLIFLIVIYF-----QGFRVVLPV------RSKNARGQQGSY-PIKLFYTSNMPIILQ 297
+ + + +I + R + P+ + + +Y PIK+ +PII
Sbjct: 220 LIIALIIAIIVGIVYVQEAERRI-PIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFA 278
Query: 298 SAL 300
AL
Sbjct: 279 QAL 281
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 41.0 bits (97), Expect = 7e-04
Identities = 55/301 (18%), Positives = 110/301 (36%), Gaps = 66/301 (21%)
Query: 31 REKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVIL----------ASNRGTVME 80
R++V++T++ L + + + +P G+ + + + R ++
Sbjct: 15 RQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFA 74
Query: 81 LGITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYV--L 136
LGI P +T+ ++MQ+L + ++ E R ++N ++ GI + +
Sbjct: 75 LGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAF 134
Query: 137 SGMYGSVNQL-----GVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNIC 191
G G L G +++V +++ + E + + YG+G+G SL I I
Sbjct: 135 LGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITE-YGIGNGTSLIIFAGIV 193
Query: 192 ENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLAT 251
E+ ++ L+ R N+ L
Sbjct: 194 ------------------VEWLPQILRTIGLI---------------RTGEVNLVAFLFF 220
Query: 252 VLIFLIVIYF-----QGFRVVLPV----RSKNAR--GQQGSY-PIKLFYTSNMPIILQSA 299
+ ++ Q R + PV + R G Q +Y PIKL +PII +A
Sbjct: 221 LAFIVLAFAGMAAVQQAERRI-PVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAA 279
Query: 300 L 300
+
Sbjct: 280 I 280
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 76/475 (16%), Positives = 135/475 (28%), Gaps = 128/475 (26%)
Query: 7 VLHLVRPFLAFL--PEVQSADRKVPFREKVIYTVIS---------LFIFLVCSQLPLYGI 55
+ F+ +VQ + + +E++ + ++S LF L+ Q +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 56 HSTTGADPFY-W-MRVILASNRGTVMELGITPIVTSGLVMQ---LLAGSKIIEVDNNVRE 110
Y + M I R M T + Q L +++ N R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMM-------TRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 111 D--RALLNGAQKLLGIIIAIGEAVAYV-LSGMYGSVNQLGVGNAILIIVQLCFAGIIVIC 167
L +L V + G+ LG G + + +C
Sbjct: 135 QPYLKLRQALLEL--------RPAKNVLIDGV------LGSGKTWV---------ALDVC 171
Query: 168 LDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLL--IT 225
L +Q I W +N E + L LL I
Sbjct: 172 LSYKVQCKMDFK--------------IFW-------LNLKNCNSPETVLEMLQKLLYQID 210
Query: 226 RNDKVRALREAFYRQNLPNVTNLLATVLIF------LIVI-------YFQGF----RVVL 268
N R+ + + + ++ L +L L+V+ + F +++L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 269 PVRSK---NARGQQGSYPIKL------FYTSNMPIILQSALVSNLYFISQLMYRRYSGN- 318
R K + + I L + +L L L + N
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNP 327
Query: 319 FFVNLLGK--------WKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYL--V 368
++++ + W ++ V SSL + + +F V
Sbjct: 328 RRLSIIAESIRDGLATWDNWKH-------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 369 FMLSA---CALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 420
F SA L S W +V S V +L + +V E KE IP
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----EKQ-PKESTISIP 429
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.057
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 398 EQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTV 435
E+Q + LQ L Y +A + I A T+
Sbjct: 18 EKQAL------KKLQASLKLYADDSAP--ALAIKA-TM 46
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.8 bits (62), Expect = 7.9
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 207 GRGAEFEGAVIAL------FHLLITRNDKVRALREAFYRQNLPNVT 246
G GA F G + + L+ KV + A L
Sbjct: 88 GTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGAR 133
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 27.9 bits (63), Expect = 9.7
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 68 RVILASNRGTVMELG-----ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLL 122
+ ++ N G V L V G++ + G + ++ + DR + A++
Sbjct: 427 KTLIGEN-GAVYRLTRETFEKVGEVPHGVLY--VDGLGVGDITEEILADRRHM--AEE-- 479
Query: 123 GIIIAI 128
G+++
Sbjct: 480 GLVVIT 485
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,384,821
Number of extensions: 461247
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 20
Length of query: 476
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 379
Effective length of database: 3,993,456
Effective search space: 1513519824
Effective search space used: 1513519824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.3 bits)