BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011845
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226
A + +++A++ P++ AW+ G G D+ + + ++PR +L
Sbjct: 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283
YK + A + +++A E+DPR W G +K+G+ D A E Y++AL +D +
Sbjct: 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
AW+ G G D+ + + ++PR +L YK + A + +++A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW---GVLEQRV 300
E+DPR W G +K+G+ D A E Y++AL +D R +AW G +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQ 116
Query: 301 GNLSAARRLFRSSLNINSQS 320
G+ A ++ +L ++ +S
Sbjct: 117 GDYDEAIEYYQKALELDPRS 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%)
Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
K Y++A +++A + +P+S +W +Q + A + +++A++ P++ AW
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72
Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI 245
+ G G D+ + + ++PR +L YK + A + +++A E+
Sbjct: 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Query: 246 DPR 248
DPR
Sbjct: 133 DPR 135
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 59/133 (44%)
Query: 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141
AW+ +QG+ +A + K L+ + + L K Y++A +++A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 142 KCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG 201
+ +P+S +W +Q + A + +++A++ P++ AW+ G G D+
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 202 KKLLKIGHAVNPR 214
+ + ++PR
Sbjct: 123 IEYYQKALELDPR 135
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 50 QCWAVLEN---KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKG 106
+ W L N K G+ +A E + + D AW+ +QG+ +A + K
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 107 LKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA 166
L+ + + L K Y++A +++A + +P+S +W +Q +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 167 ARQLFERAVQASPKN 181
A + +++A++ P++
Sbjct: 122 AIEYYQKALELDPRS 136
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 116/295 (39%), Gaps = 6/295 (2%)
Query: 44 ENPYIWQCWAVLEN---KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKAR 100
+NP + + ++ L N + G + +A E + + I + A + G+++ A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160
Q L++ + L L R E+A+ + +A + P +W +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ 220
Q A FE+AV P A+ G D+ +++P V+
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 221 SLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
+LA + Y+ +LA +RRA E+ P + ++G++ A + Y AL +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQG 335
T A L +++ GN+ A RL+R +L + + A + + QG
Sbjct: 302 PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH---AVNPRDPVLLQSLA 223
A+ + +A++ P AW G F +G+ L I H AV DP L +
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCV-----FNAQGEIWLAIHHFEKAVT-LDPNFLDAYI 207
Query: 224 LLEYKYSTANL---ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280
L A + A + RA + P H V + +++G +D A + Y RA+ +
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRA 340
A C A + E+ G+++ A + ++L + + A ++ +QGN
Sbjct: 268 PHFPD-AYCNLANALKEK--GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---I 321
Query: 341 EEIRNLY 347
EE LY
Sbjct: 322 EEAVRLY 328
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
AW+ G G D+ + + ++P + +L YK + A + +++A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
E+DP + W G +K+G+ D A E Y++AL +D A + L G +Q+ G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL---GNAKQKQG 125
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 76 DKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134
D G+ A AW+ +QG+ +A + K L+ N + L K Y++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 135 NLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
+++A + +P + +W +Q + A + +++A++ P N
Sbjct: 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 44/98 (44%)
Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
K Y++A +++A + +P + +W +Q + A + +++A++ P N AW
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
+ G G D+ + + ++P + Q+L
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 45/103 (43%)
Query: 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLK 206
S +W +Q + A + +++A++ P N AW+ G G D+ + +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 207 IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249
++P + +L YK + A + +++A E+DP +
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 50 QCWAVLEN---KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKG 106
+ W L N K G+ +A E + + D + AW+ +QG+ +A + K
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 107 LKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC 148
L+ N + L K Y++A +++A + +P +
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
YK + A + +++A E+DP + W G +K+G+ D A E Y++AL +D A
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 287 ARCLQAWGVLEQRVG 301
+ L G +Q+ G
Sbjct: 80 KQNL---GNAKQKQG 91
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 93/239 (38%), Gaps = 17/239 (7%)
Query: 61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120
+I KA ELF + ++ A++ + + + K LK N +Y
Sbjct: 259 DIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310
Query: 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180
+ Y+QA F +A + +P++ +I + + ++ LF A + P+
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370
Query: 181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAV-NPRDPV------LLQSLALLEYKYSTAN 233
+ + + DK K + + N D + L+ LL + N
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 234 L--ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290
A L +AS++DPR + I M+ ++ ++D A L+E + + T E + +
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283
YK + A + +++A E+DPR W G +K+G+ D A E Y++AL +D +
Sbjct: 14 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW---GVLEQRVGNLSAARR 308
W G +K+G+ D A E Y++AL +D R +AW G + G+ A
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIE 58
Query: 309 LFRSSLNINSQS 320
++ +L ++ +S
Sbjct: 59 YYQKALELDPRS 70
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
AW G G K + + ++P + +L YK A + +++A
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
E+DP + W G +K+G+ A E Y++AL +D A+ Q G +Q+ G
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN---AKAKQNLGNAKQKQG 125
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 76 DKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134
D G+ A AW +QG+ +KA + K L+ N + L K Y++A
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 135 NLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
+++A + +P + +W +Q + A + +++A++ P N
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 44/98 (44%)
Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
K Y++A +++A + +P + ++W +Q + A + +++A++ P N AW
Sbjct: 21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
+ G G K + + ++P + Q+L
Sbjct: 81 YRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243
AW+ G G D+ + + + P + +L YK + A + +++A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301
E+ P + W G +K+G+ D A E Y++AL + A + L G +Q+ G
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL---GNAKQKQG 125
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 76 DKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134
D G+ A AW+ +QG+ +A + K L+ N + L K Y++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 135 NLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181
+++A + P + +W +Q + A + +++A++ P N
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 42/98 (42%)
Query: 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
K Y++A +++A + P + +W +Q + A + +++A++ P N AW
Sbjct: 21 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80
Query: 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223
+ G G D+ + + + P + Q+L
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQ---MEMQQENNLAARQLFERAVQASPKNRF 183
N+ +AR F +++ +P+ +WI ++ +E + + ++A R Q +
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HL 442
Query: 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242
+ G+ +G I + L+ +A+ DP+LL L ++ + S A F+ A
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294
AR+ F ++S +DP+ P WI + EG D A Y A + T L G
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL---G 448
Query: 295 VLEQRVGNLSAARRLFRSS 313
+ ++GN+ A +SS
Sbjct: 449 MQHMQLGNILLANEYLQSS 467
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 92/265 (34%), Gaps = 64/265 (24%)
Query: 68 LFDASTVAD---KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG-NEYIYQTLALL 123
L A+TV D + A + + N+ A+ LL + + N YI+ LAL
Sbjct: 224 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF--LALT 281
Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
A ++ F++A NP+ ++ QM ++ A++ F++A +P+N +
Sbjct: 282 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 341
Query: 184 AW-------HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA---- 232
+ + G F + F ++ K + P P + + TA
Sbjct: 342 PYIQLACLLYKQGKFTESEAFFNETK----LKFPTLPEVPTFFAEILTDRGDFDTAIKQY 397
Query: 233 -------------------------------------------NLARKLFRRASEIDPRH 249
N A KL +A E+DPR
Sbjct: 398 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 457
Query: 250 QPVWIAWGWMEWKEGNLDTARELYE 274
+ I ++ + +D A EL+E
Sbjct: 458 EQAKIGLAQLKLQMEKIDEAIELFE 482
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/265 (19%), Positives = 92/265 (34%), Gaps = 64/265 (24%)
Query: 68 LFDASTVAD---KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG-NEYIYQTLALL 123
L A+TV D + A + + N+ A+ LL + + N YI+ LAL
Sbjct: 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF--LALT 285
Query: 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRF 183
A ++ F++A NP+ ++ QM ++ A++ F++A +P+N +
Sbjct: 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345
Query: 184 AW-------HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA---- 232
+ + G F + F ++ K + P P + + TA
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETK----LKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 233 -------------------------------------------NLARKLFRRASEIDPRH 249
N A KL +A E+DPR
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461
Query: 250 QPVWIAWGWMEWKEGNLDTARELYE 274
+ I ++ + +D A EL+E
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFE 486
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF-IDKGKKLLKIGHAVNP 213
++ Q+E L A+ + + + K RF + G+F+ F + K + KIGHA++
Sbjct: 51 TEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFE-KGVFDEKGNFLVPPEKSINKIGHALHA 109
Query: 214 RDPVLLQSLALLEYKYSTANLARKL 238
DPV + + + LAR L
Sbjct: 110 HDPVFKS----ITHSFKVQTLARSL 130
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 48/101 (47%)
Query: 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFR 138
H + + A ++ QGNI++A +L K L+ + LA + + + ++A ++
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179
+A + +P ++ + ++ A Q + RA+Q +P
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
YK + A K + +A E+DP + + +++G+ + REL E+A+ +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 287 ARCL-QAWGVLEQRVGNLSAARRLFRSSLNINSQS 320
R + +A+ R+GN ++ +++ ++S
Sbjct: 75 YRQIAKAYA----RIGNSYFKEEKYKDAIHFYNKS 105
>pdb|4H7X|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7X|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
pdb|4H7Y|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat (Tpr)
Motif Of Human Dual Specificity Protein Kinase Mps1
Length = 161
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 65 ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK 108
AR+ F + K +A EL QGN+KK++QLL K ++
Sbjct: 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 13/168 (7%)
Query: 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175
I LA+ + Y QA A K +PK+ +W+ +++ + N A++ F +A+
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 176 QASP-----KNRFAWHVWGIFE---ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227
P N + W + G +M + DK + P + + +
Sbjct: 70 SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA-----LADPTYPTPYIANLNKGICSA 124
Query: 228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYER 275
K LA +R+ P+ P + + G L A +++
Sbjct: 125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233
AV+ P++ AW + E MG G+ ++ G A++P P + L + +
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 234 LARKLFRRASEIDPRH 249
A L ++AS+ P H
Sbjct: 75 EAAVLLQQASDAAPEH 90
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 128 NRYEQARNLFRQATKCNPKSCAS--WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185
RY+ A LF +A K NP+ + W+A +Q+++ N A + + V +P+ +
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVN--PALENGKTLVARTPRYLGGY 76
Query: 186 HVW-----GIF------EANMGFIDKGKKLLKIGHAVNPR-DPVLLQ 220
V ++ E G++++ +LK VNPR P+ LQ
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233
AV+ P++ AW + E MG G+ ++ G A++P P + L + +
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 234 LARKLFRRASEIDPRH 249
A L ++AS+ P H
Sbjct: 75 EAAVLLQQASDAAPEH 90
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 202 KKLLKIGHAVNPRDPVLLQSLALL-----EYKYSTANLARKLFRRASEIDPRHQPVWIAW 256
+ LL +NP D L SL +L Y + ANL RRA E+ P +W
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL-----RRAVELRPDDAQLWNKL 212
Query: 257 GWMEWKEGNLDTARELYERALSID 280
G A + Y RAL I+
Sbjct: 213 GATLANGNRPQEALDAYNRALDIN 236
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 202 KKLLKIGHAVNPRDPVLLQSLALL-----EYKYSTANLARKLFRRASEIDPRHQPVWIAW 256
+ LL +NP D L SL +L Y + ANL RRA E+ P +W
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL-----RRAVELRPDDAQLWNKL 212
Query: 257 GWMEWKEGNLDTARELYERALSID 280
G A + Y RAL I+
Sbjct: 213 GATLANGNRPQEALDAYNRALDIN 236
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286
YK + A K + +A E+DP + + + +++G+ + REL E+A+ +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320
R + R+GN ++ +++ ++S
Sbjct: 75 YRMI---AYAYARIGNSYFKEEKYKDAIHFYNKS 105
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 12/177 (6%)
Query: 29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFD-ASTVADKGHIAAWHGWA 87
EA IY + +N ++ +A E K +++ + D + +
Sbjct: 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363
Query: 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ-ARNLFRQATKCN-- 144
R IK R + K + ++Y T AL+E ++ + A +F K
Sbjct: 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423
Query: 145 -PKSCASWIAWSQMEMQQENNLAARQLFERAVQASP----KNRFAWHVWGIFEANMG 196
P+ ++I + + ++NN R LFER + + K+ W + FE+N+G
Sbjct: 424 IPEYVLAYIDYLS-HLNEDNN--TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,256,426
Number of Sequences: 62578
Number of extensions: 578735
Number of successful extensions: 1800
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 107
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)