Query 011845
Match_columns 476
No_of_seqs 1255 out of 2887
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 05:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.6E-50 3.5E-55 362.3 30.3 388 1-392 106-496 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.6E-46 1E-50 333.8 28.1 351 2-356 141-491 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 5.5E-37 1.2E-41 303.8 46.6 369 12-385 128-575 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-36 2.4E-41 319.3 47.5 379 4-388 458-839 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-36 4.4E-41 317.4 48.0 382 3-389 423-807 (899)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-35 2.3E-40 294.7 45.2 349 2-352 152-573 (615)
7 PRK11447 cellulose synthase su 100.0 1.2E-35 2.7E-40 312.4 46.4 382 3-387 173-706 (1157)
8 PRK11447 cellulose synthase su 100.0 2.1E-35 4.6E-40 310.6 47.0 368 16-387 274-749 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 4.7E-35 1E-39 288.8 44.8 364 9-386 40-408 (656)
10 PRK15174 Vi polysaccharide exp 100.0 8.2E-34 1.8E-38 280.0 42.1 365 21-389 15-389 (656)
11 PRK10049 pgaA outer membrane p 100.0 4.8E-31 1E-35 265.9 45.6 380 8-389 12-464 (765)
12 KOG2002 TPR-containing nuclear 100.0 3.1E-31 6.6E-36 250.7 34.7 388 2-392 261-756 (1018)
13 KOG0547 Translocase of outer m 100.0 5.8E-31 1.3E-35 230.9 31.2 337 12-349 116-565 (606)
14 KOG2002 TPR-containing nuclear 100.0 2.2E-30 4.7E-35 244.9 37.0 386 3-389 156-567 (1018)
15 PRK10049 pgaA outer membrane p 100.0 1.4E-29 3.1E-34 255.3 42.0 346 4-354 42-460 (765)
16 KOG1126 DNA-binding cell divis 100.0 7.6E-30 1.6E-34 232.9 26.7 306 13-322 319-626 (638)
17 PRK09782 bacteriophage N4 rece 100.0 8.7E-28 1.9E-32 242.4 43.7 374 4-386 336-745 (987)
18 KOG0547 Translocase of outer m 100.0 4.9E-29 1.1E-33 218.9 30.1 331 48-381 117-566 (606)
19 KOG2003 TPR repeat-containing 100.0 2.4E-29 5.2E-34 219.1 27.9 352 5-360 231-699 (840)
20 PRK09782 bacteriophage N4 rece 100.0 1.2E-27 2.5E-32 241.4 41.6 344 5-355 370-745 (987)
21 PRK11788 tetratricopeptide rep 100.0 2.4E-27 5.2E-32 223.8 38.4 299 45-347 34-344 (389)
22 KOG1126 DNA-binding cell divis 100.0 1.2E-28 2.5E-33 225.1 27.1 302 48-352 319-622 (638)
23 PRK11788 tetratricopeptide rep 100.0 2.3E-27 5E-32 224.0 37.2 300 10-315 34-346 (389)
24 KOG1155 Anaphase-promoting com 100.0 1.2E-26 2.6E-31 202.8 37.7 362 9-381 162-536 (559)
25 PRK14574 hmsH outer membrane p 100.0 4.7E-26 1E-30 225.4 45.2 384 4-389 27-521 (822)
26 KOG0495 HAT repeat protein [RN 100.0 1.2E-25 2.5E-30 204.2 37.9 340 11-352 516-882 (913)
27 KOG2076 RNA polymerase III tra 100.0 2.3E-25 4.9E-30 209.9 38.6 367 11-380 139-554 (895)
28 KOG1155 Anaphase-promoting com 100.0 2.5E-25 5.4E-30 194.6 33.6 336 4-350 191-536 (559)
29 KOG0495 HAT repeat protein [RN 100.0 8.6E-25 1.9E-29 198.7 37.2 380 3-391 402-856 (913)
30 KOG0624 dsRNA-activated protei 100.0 2.7E-25 5.9E-30 187.1 29.0 317 7-327 34-381 (504)
31 KOG1173 Anaphase-promoting com 100.0 5.4E-25 1.2E-29 197.2 31.2 340 12-352 142-520 (611)
32 KOG2376 Signal recognition par 99.9 2.9E-23 6.4E-28 187.0 38.9 448 12-471 13-601 (652)
33 PRK14574 hmsH outer membrane p 99.9 2.4E-23 5.2E-28 206.3 41.8 349 2-355 59-518 (822)
34 PF13429 TPR_15: Tetratricopep 99.9 5.1E-27 1.1E-31 210.0 13.2 270 5-278 4-276 (280)
35 PLN03218 maturation of RBCL 1; 99.9 1.8E-22 3.9E-27 205.5 47.3 338 10-350 436-783 (1060)
36 KOG0624 dsRNA-activated protei 99.9 3.3E-24 7.2E-29 180.6 28.2 310 43-352 35-372 (504)
37 KOG0548 Molecular co-chaperone 99.9 8.3E-24 1.8E-28 189.0 32.1 374 14-389 5-463 (539)
38 KOG1173 Anaphase-promoting com 99.9 3.8E-24 8.3E-29 191.8 29.6 285 44-331 242-533 (611)
39 PLN03218 maturation of RBCL 1; 99.9 3.3E-22 7.2E-27 203.6 47.4 334 45-382 436-784 (1060)
40 KOG1174 Anaphase-promoting com 99.9 9E-24 1.9E-28 182.2 30.1 379 6-389 92-508 (564)
41 PLN03081 pentatricopeptide (PP 99.9 2E-23 4.2E-28 210.4 36.9 356 11-380 158-556 (697)
42 KOG1174 Anaphase-promoting com 99.9 2.5E-23 5.5E-28 179.5 31.7 330 2-336 186-520 (564)
43 PF13429 TPR_15: Tetratricopep 99.9 5.1E-26 1.1E-30 203.5 14.0 259 85-348 13-275 (280)
44 TIGR00540 hemY_coli hemY prote 99.9 1.2E-22 2.5E-27 191.0 36.6 299 50-350 88-399 (409)
45 PLN03081 pentatricopeptide (PP 99.9 1.8E-22 3.9E-27 203.4 38.9 340 10-360 188-567 (697)
46 KOG2076 RNA polymerase III tra 99.9 2.7E-22 5.9E-27 189.3 35.7 331 47-379 140-510 (895)
47 KOG2003 TPR repeat-containing 99.9 4.8E-24 1E-28 186.2 21.5 374 12-389 202-697 (840)
48 TIGR00540 hemY_coli hemY prote 99.9 6.3E-22 1.4E-26 186.0 36.6 293 17-314 90-397 (409)
49 KOG4162 Predicted calmodulin-b 99.9 1.3E-21 2.9E-26 181.7 37.4 379 9-391 321-793 (799)
50 PRK10747 putative protoheme IX 99.9 1.3E-21 2.8E-26 182.9 36.5 293 15-316 88-390 (398)
51 PLN03077 Protein ECB2; Provisi 99.9 6.6E-22 1.4E-26 204.1 37.2 355 10-380 322-719 (857)
52 KOG0548 Molecular co-chaperone 99.9 9.2E-22 2E-26 176.0 31.3 340 2-346 27-485 (539)
53 KOG1915 Cell cycle control pro 99.9 1.7E-20 3.7E-25 164.9 38.4 373 7-386 69-541 (677)
54 PRK12370 invasion protein regu 99.9 1.8E-22 3.8E-27 196.7 28.4 216 61-278 276-501 (553)
55 KOG1129 TPR repeat-containing 99.9 4.6E-23 1E-27 172.7 20.5 265 89-354 188-462 (478)
56 PRK12370 invasion protein regu 99.9 5.2E-22 1.1E-26 193.4 30.4 262 14-279 261-535 (553)
57 PLN03077 Protein ECB2; Provisi 99.9 7.7E-21 1.7E-25 196.2 39.8 341 9-361 352-731 (857)
58 PRK10747 putative protoheme IX 99.9 2.9E-20 6.4E-25 173.7 37.6 292 50-349 88-389 (398)
59 KOG4162 Predicted calmodulin-b 99.9 4.4E-20 9.4E-25 171.8 36.0 340 10-352 356-785 (799)
60 KOG1129 TPR repeat-containing 99.9 5.3E-22 1.1E-26 166.4 20.8 233 50-283 227-462 (478)
61 KOG1125 TPR repeat-containing 99.9 9.1E-22 2E-26 177.5 20.5 261 50-310 289-565 (579)
62 KOG1125 TPR repeat-containing 99.9 1.3E-21 2.7E-26 176.6 21.1 257 84-343 289-564 (579)
63 PRK11189 lipoprotein NlpI; Pro 99.9 1E-20 2.2E-25 169.4 27.0 218 60-281 40-267 (296)
64 PRK11189 lipoprotein NlpI; Pro 99.9 3.6E-20 7.8E-25 165.8 28.6 239 93-336 39-286 (296)
65 KOG1915 Cell cycle control pro 99.9 5.6E-18 1.2E-22 149.3 39.3 379 2-386 98-590 (677)
66 KOG1156 N-terminal acetyltrans 99.9 1.8E-18 3.8E-23 158.2 37.3 248 12-260 8-263 (700)
67 KOG1156 N-terminal acetyltrans 99.9 1.6E-18 3.4E-23 158.5 36.5 376 3-382 33-512 (700)
68 KOG1127 TPR repeat-containing 99.9 1.7E-20 3.7E-25 178.4 24.4 341 2-347 483-910 (1238)
69 COG3063 PilF Tfp pilus assembl 99.9 8E-20 1.7E-24 146.5 24.3 202 82-283 37-240 (250)
70 TIGR02521 type_IV_pilW type IV 99.9 9.3E-20 2E-24 159.4 27.0 197 46-242 31-229 (234)
71 COG3063 PilF Tfp pilus assembl 99.9 9.5E-20 2.1E-24 146.1 23.9 206 46-251 35-242 (250)
72 TIGR02521 type_IV_pilW type IV 99.9 1E-19 2.2E-24 159.1 26.9 198 80-277 31-230 (234)
73 KOG0550 Molecular chaperone (D 99.9 7.7E-20 1.7E-24 158.3 23.5 270 12-282 50-353 (486)
74 COG2956 Predicted N-acetylgluc 99.9 3E-18 6.6E-23 143.9 30.7 268 53-353 42-314 (389)
75 KOG1127 TPR repeat-containing 99.9 2.6E-19 5.5E-24 170.5 26.9 386 2-388 517-1074(1238)
76 COG2956 Predicted N-acetylgluc 99.9 1.9E-17 4.1E-22 139.2 33.2 266 15-283 39-315 (389)
77 PLN02789 farnesyltranstransfer 99.9 7.2E-19 1.6E-23 156.6 26.4 223 60-282 51-305 (320)
78 PLN02789 farnesyltranstransfer 99.8 1.2E-18 2.5E-23 155.3 26.5 234 90-326 47-312 (320)
79 KOG1840 Kinesin light chain [C 99.8 1.9E-18 4.1E-23 160.5 28.1 240 110-349 195-478 (508)
80 KOG1840 Kinesin light chain [C 99.8 3.2E-18 7E-23 158.9 28.7 239 144-382 195-480 (508)
81 cd05804 StaR_like StaR_like; a 99.8 1.5E-17 3.3E-22 155.0 33.7 310 6-316 1-336 (355)
82 KOG0550 Molecular chaperone (D 99.8 3.8E-19 8.2E-24 154.1 20.1 270 47-319 50-353 (486)
83 cd05804 StaR_like StaR_like; a 99.8 1.1E-16 2.3E-21 149.3 35.2 308 43-352 3-338 (355)
84 KOG3785 Uncharacterized conser 99.8 2.8E-16 6.1E-21 133.8 29.6 367 13-386 59-495 (557)
85 KOG2376 Signal recognition par 99.8 7.7E-15 1.7E-19 133.3 35.0 346 2-356 37-493 (652)
86 KOG3785 Uncharacterized conser 99.8 2E-15 4.3E-20 128.7 29.4 353 20-375 31-451 (557)
87 PF12569 NARP1: NMDA receptor- 99.8 7.4E-15 1.6E-19 138.5 35.3 304 10-317 3-335 (517)
88 COG3071 HemY Uncharacterized e 99.8 1.7E-14 3.6E-19 125.5 34.1 293 16-316 89-390 (400)
89 TIGR03302 OM_YfiO outer membra 99.7 7.1E-16 1.5E-20 134.6 22.7 104 78-181 31-148 (235)
90 PRK14720 transcript cleavage f 99.7 1.5E-15 3.3E-20 149.3 26.6 291 41-391 26-316 (906)
91 TIGR03302 OM_YfiO outer membra 99.7 1.3E-15 2.7E-20 133.0 23.0 108 44-151 31-152 (235)
92 PF12569 NARP1: NMDA receptor- 99.7 3.3E-14 7E-19 134.2 33.7 304 45-354 3-338 (517)
93 KOG2047 mRNA splicing factor [ 99.7 2.8E-13 6.1E-18 124.3 37.1 200 150-349 389-614 (835)
94 KOG2047 mRNA splicing factor [ 99.7 6.9E-13 1.5E-17 121.8 36.4 338 3-345 341-718 (835)
95 COG3071 HemY Uncharacterized e 99.7 1E-12 2.3E-17 114.4 35.2 290 52-348 90-388 (400)
96 KOG3060 Uncharacterized conser 99.7 2.6E-14 5.6E-19 116.6 23.5 184 77-260 49-235 (289)
97 PRK15359 type III secretion sy 99.7 1.6E-15 3.5E-20 119.9 15.6 122 67-191 14-135 (144)
98 KOG4340 Uncharacterized conser 99.7 1.1E-13 2.5E-18 115.4 26.8 361 20-387 19-449 (459)
99 PRK15359 type III secretion sy 99.7 2.1E-15 4.5E-20 119.3 15.3 105 154-258 30-134 (144)
100 PRK10370 formate-dependent nit 99.7 2.2E-14 4.8E-19 119.7 22.1 126 161-286 52-180 (198)
101 PRK04841 transcriptional regul 99.7 1.2E-12 2.7E-17 137.3 39.0 374 12-387 342-766 (903)
102 PRK14720 transcript cleavage f 99.7 1.3E-13 2.9E-18 135.9 28.9 225 4-261 24-268 (906)
103 PF04733 Coatomer_E: Coatomer 99.7 9E-15 1.9E-19 128.9 18.5 259 19-286 9-272 (290)
104 KOG3060 Uncharacterized conser 99.7 2.4E-13 5.3E-18 111.0 24.9 200 24-223 25-232 (289)
105 COG5010 TadD Flp pilus assembl 99.7 3.9E-14 8.4E-19 116.8 20.3 171 101-272 54-224 (257)
106 COG5010 TadD Flp pilus assembl 99.7 4.8E-14 1E-18 116.3 20.7 181 62-243 49-229 (257)
107 PRK10370 formate-dependent nit 99.6 3.5E-14 7.7E-19 118.4 20.2 123 59-181 52-177 (198)
108 KOG1128 Uncharacterized conser 99.6 2.5E-14 5.4E-19 133.2 18.7 217 12-244 399-615 (777)
109 PRK04841 transcriptional regul 99.6 6.2E-12 1.3E-16 132.1 38.9 339 14-352 377-762 (903)
110 KOG1128 Uncharacterized conser 99.6 2.4E-13 5.2E-18 126.8 23.0 217 48-279 400-616 (777)
111 PF04733 Coatomer_E: Coatomer 99.6 1.1E-13 2.4E-18 122.1 18.3 257 54-322 9-271 (290)
112 PRK15179 Vi polysaccharide bio 99.6 6.3E-13 1.4E-17 130.3 25.0 138 110-247 82-219 (694)
113 PRK15179 Vi polysaccharide bio 99.6 3E-13 6.6E-18 132.5 22.7 153 132-284 70-222 (694)
114 KOG1130 Predicted G-alpha GTPa 99.6 5.6E-14 1.2E-18 122.3 13.1 287 53-339 24-373 (639)
115 KOG4340 Uncharacterized conser 99.6 9.5E-13 2.1E-17 110.0 19.7 286 56-345 20-334 (459)
116 KOG1130 Predicted G-alpha GTPa 99.6 9.6E-14 2.1E-18 120.9 14.3 270 85-355 22-349 (639)
117 TIGR02552 LcrH_SycD type III s 99.5 3.4E-13 7.3E-18 106.6 15.7 116 170-285 5-120 (135)
118 TIGR02552 LcrH_SycD type III s 99.5 3.8E-13 8.3E-18 106.3 15.5 115 68-182 5-119 (135)
119 COG4783 Putative Zn-dependent 99.5 1.6E-11 3.6E-16 110.1 23.9 153 111-280 303-455 (484)
120 COG4783 Putative Zn-dependent 99.5 2.6E-11 5.6E-16 108.8 23.8 153 145-317 303-455 (484)
121 KOG0553 TPR repeat-containing 99.4 2.6E-12 5.6E-17 108.2 13.4 120 80-199 81-200 (304)
122 KOG1070 rRNA processing protei 99.4 1.5E-10 3.3E-15 115.3 26.8 238 64-302 1442-1686(1710)
123 KOG0553 TPR repeat-containing 99.4 3.5E-12 7.6E-17 107.4 13.3 120 46-165 81-200 (304)
124 PRK15363 pathogenicity island 99.4 1.2E-11 2.7E-16 95.4 15.3 102 179-280 32-133 (157)
125 PRK15363 pathogenicity island 99.4 1.3E-11 2.8E-16 95.3 15.3 102 77-178 32-133 (157)
126 KOG1070 rRNA processing protei 99.4 3.7E-10 8E-15 112.7 26.9 216 29-246 1442-1664(1710)
127 KOG1914 mRNA cleavage and poly 99.3 9.2E-08 2E-12 87.2 36.2 375 3-383 12-503 (656)
128 PF13525 YfiO: Outer membrane 99.3 3.6E-10 7.8E-15 95.3 20.0 182 11-233 5-195 (203)
129 PLN03088 SGT1, suppressor of 99.3 6.2E-11 1.3E-15 108.8 15.5 101 53-153 9-109 (356)
130 PRK10866 outer membrane biogen 99.3 1.1E-09 2.4E-14 94.5 22.2 182 113-311 31-236 (243)
131 PF13525 YfiO: Outer membrane 99.3 4.5E-10 9.7E-15 94.7 19.1 168 114-304 5-195 (203)
132 PLN03088 SGT1, suppressor of 99.3 7.2E-11 1.6E-15 108.3 15.3 113 14-127 5-117 (356)
133 PRK10866 outer membrane biogen 99.3 1.4E-09 3.1E-14 93.8 22.2 182 44-242 30-238 (243)
134 KOG3617 WD40 and TPR repeat-co 99.3 5.2E-09 1.1E-13 99.5 25.9 225 21-276 738-993 (1416)
135 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.8E-10 3.9E-15 88.8 13.3 107 217-323 3-112 (119)
136 KOG1941 Acetylcholine receptor 99.3 7.8E-09 1.7E-13 89.3 23.7 234 11-245 6-275 (518)
137 PRK02603 photosystem I assembl 99.3 1.6E-10 3.5E-15 94.9 13.4 122 248-386 33-154 (172)
138 KOG1941 Acetylcholine receptor 99.2 7.7E-09 1.7E-13 89.4 23.0 306 48-353 8-363 (518)
139 COG0457 NrfG FOG: TPR repeat [ 99.2 1.6E-07 3.5E-12 82.4 32.9 224 59-282 36-268 (291)
140 KOG3081 Vesicle coat complex C 99.2 6.1E-08 1.3E-12 80.6 26.6 256 19-286 16-278 (299)
141 CHL00033 ycf3 photosystem I as 99.2 4.5E-10 9.7E-15 92.0 14.2 131 232-386 15-154 (168)
142 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.8E-10 1E-14 86.3 13.3 23 15-37 6-28 (119)
143 COG4235 Cytochrome c biogenesi 99.2 6.9E-10 1.5E-14 94.5 15.2 121 96-216 138-261 (287)
144 COG0457 NrfG FOG: TPR repeat [ 99.2 3.1E-07 6.7E-12 80.6 32.8 224 93-319 36-268 (291)
145 KOG2053 Mitochondrial inherita 99.2 9.2E-07 2E-11 85.6 36.8 387 3-391 35-546 (932)
146 COG4235 Cytochrome c biogenesi 99.2 1E-09 2.2E-14 93.6 15.3 122 164-285 138-262 (287)
147 KOG3617 WD40 and TPR repeat-co 99.2 7.1E-08 1.5E-12 92.0 28.9 113 17-140 806-938 (1416)
148 COG3898 Uncharacterized membra 99.2 4.5E-07 9.8E-12 79.5 30.5 285 23-315 96-391 (531)
149 PRK02603 photosystem I assembl 99.2 1.2E-09 2.6E-14 89.8 14.4 118 44-181 33-153 (172)
150 COG4785 NlpI Lipoprotein NlpI, 99.2 4.8E-09 1E-13 84.1 17.0 198 115-317 66-267 (297)
151 PF09976 TPR_21: Tetratricopep 99.2 3.1E-09 6.7E-14 84.6 16.0 116 58-174 23-144 (145)
152 cd00189 TPR Tetratricopeptide 99.1 1E-09 2.2E-14 80.7 12.2 90 52-141 6-95 (100)
153 PRK11906 transcriptional regul 99.1 5.9E-09 1.3E-13 94.5 18.9 158 50-207 259-432 (458)
154 cd00189 TPR Tetratricopeptide 99.1 1.3E-09 2.9E-14 80.1 12.6 97 83-179 3-99 (100)
155 KOG1258 mRNA processing protei 99.1 1.3E-06 2.8E-11 81.4 34.0 101 183-283 298-399 (577)
156 PF09976 TPR_21: Tetratricopep 99.1 5.7E-09 1.2E-13 83.0 16.8 117 229-346 24-143 (145)
157 KOG3081 Vesicle coat complex C 99.1 1.5E-07 3.2E-12 78.3 24.5 256 53-322 15-277 (299)
158 PF14938 SNAP: Soluble NSF att 99.1 2.9E-09 6.2E-14 94.9 15.9 155 163-317 89-267 (282)
159 CHL00033 ycf3 photosystem I as 99.1 2.8E-09 6E-14 87.4 14.5 82 182-263 35-119 (168)
160 PRK10803 tol-pal system protei 99.1 3.7E-09 8E-14 91.8 15.8 109 216-324 142-254 (263)
161 PRK11906 transcriptional regul 99.1 2.2E-08 4.8E-13 90.9 20.9 145 131-275 275-432 (458)
162 PF13414 TPR_11: TPR repeat; P 99.1 4.2E-10 9.2E-15 76.8 7.6 65 46-110 3-68 (69)
163 PF12895 Apc3: Anaphase-promot 99.1 3.2E-10 7E-15 80.7 7.1 81 24-105 2-83 (84)
164 PF14938 SNAP: Soluble NSF att 99.1 7.7E-09 1.7E-13 92.2 17.6 131 150-280 116-267 (282)
165 PF13414 TPR_11: TPR repeat; P 99.1 8.3E-10 1.8E-14 75.4 8.8 64 115-178 4-68 (69)
166 PRK10153 DNA-binding transcrip 99.1 1.1E-08 2.4E-13 97.9 19.3 121 130-251 358-488 (517)
167 PF12688 TPR_5: Tetratrico pep 99.1 9E-09 1.9E-13 77.2 14.7 98 251-348 2-102 (120)
168 PF12895 Apc3: Anaphase-promot 99.1 5.3E-10 1.1E-14 79.6 7.8 81 59-140 2-84 (84)
169 PRK10153 DNA-binding transcrip 99.1 1.3E-08 2.8E-13 97.4 19.6 146 140-286 329-489 (517)
170 COG4785 NlpI Lipoprotein NlpI, 99.1 9.9E-09 2.1E-13 82.3 15.3 193 148-351 65-267 (297)
171 COG3898 Uncharacterized membra 99.1 5.7E-07 1.2E-11 78.9 27.1 260 11-279 120-392 (531)
172 KOG2053 Mitochondrial inherita 99.1 1.6E-06 3.5E-11 84.0 32.6 226 22-249 20-259 (932)
173 KOG4648 Uncharacterized conser 99.1 1.2E-10 2.6E-15 99.6 4.2 245 83-339 100-356 (536)
174 KOG0543 FKBP-type peptidyl-pro 99.0 6.1E-09 1.3E-13 92.1 14.4 129 14-142 211-354 (397)
175 PRK15331 chaperone protein Sic 99.0 1E-08 2.3E-13 79.7 13.9 100 77-176 34-133 (165)
176 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.9E-14 73.3 7.7 58 54-111 5-62 (65)
177 PF13432 TPR_16: Tetratricopep 99.0 1.8E-09 3.8E-14 72.7 8.2 60 121-180 4-63 (65)
178 KOG0543 FKBP-type peptidyl-pro 99.0 9.3E-09 2E-13 90.9 14.1 129 84-212 212-356 (397)
179 PRK10803 tol-pal system protei 99.0 1.6E-08 3.5E-13 87.8 15.4 102 81-182 143-251 (263)
180 KOG1914 mRNA cleavage and poly 99.0 1.9E-05 4.1E-10 72.6 34.7 342 35-381 10-464 (656)
181 KOG4648 Uncharacterized conser 99.0 6.2E-10 1.4E-14 95.2 6.0 233 49-290 100-341 (536)
182 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.2E-08 4.7E-13 91.5 16.2 115 123-240 178-292 (395)
183 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.2E-08 4.9E-13 91.4 16.1 122 85-209 174-295 (395)
184 PRK15331 chaperone protein Sic 99.0 1.9E-08 4.1E-13 78.3 12.9 102 109-210 32-133 (165)
185 KOG2300 Uncharacterized conser 99.0 1.9E-05 4.1E-10 71.6 33.2 128 11-138 7-151 (629)
186 COG5107 RNA14 Pre-mRNA 3'-end 99.0 2.4E-05 5.1E-10 70.3 33.3 373 4-384 35-534 (660)
187 COG4105 ComL DNA uptake lipopr 98.9 7.2E-07 1.6E-11 74.7 21.2 172 114-311 34-228 (254)
188 COG4105 ComL DNA uptake lipopr 98.9 7.8E-07 1.7E-11 74.5 21.1 188 45-249 33-237 (254)
189 COG1729 Uncharacterized protei 98.9 5.3E-08 1.2E-12 82.2 14.0 108 219-326 144-254 (262)
190 PF12688 TPR_5: Tetratrico pep 98.9 7.7E-08 1.7E-12 72.2 13.1 90 50-139 5-100 (120)
191 PF14559 TPR_19: Tetratricopep 98.9 1E-08 2.2E-13 69.7 7.6 65 57-121 2-66 (68)
192 KOG2471 TPR repeat-containing 98.9 2.5E-06 5.5E-11 77.1 24.2 56 323-378 621-681 (696)
193 KOG2796 Uncharacterized conser 98.9 7.1E-06 1.5E-10 68.3 24.8 144 150-293 179-329 (366)
194 KOG1258 mRNA processing protei 98.9 3.7E-05 8E-10 72.0 32.3 362 26-390 60-479 (577)
195 PF13512 TPR_18: Tetratricopep 98.8 1.3E-07 2.9E-12 72.0 13.0 108 216-323 10-135 (142)
196 PF14559 TPR_19: Tetratricopep 98.8 1.8E-08 4E-13 68.4 7.5 59 127-185 4-62 (68)
197 KOG2471 TPR repeat-containing 98.8 6.3E-07 1.4E-11 80.8 16.9 151 184-334 208-382 (696)
198 COG4700 Uncharacterized protei 98.8 2.7E-06 5.8E-11 67.0 18.2 141 166-311 74-217 (251)
199 COG1729 Uncharacterized protei 98.7 3.6E-07 7.7E-12 77.3 13.9 102 49-150 144-251 (262)
200 COG4700 Uncharacterized protei 98.7 3.8E-06 8.2E-11 66.1 18.1 146 129-276 71-219 (251)
201 PF13512 TPR_18: Tetratricopep 98.7 6.9E-07 1.5E-11 68.1 13.6 68 46-113 10-80 (142)
202 PF13371 TPR_9: Tetratricopept 98.7 9.9E-08 2.1E-12 65.9 8.4 60 123-182 4-63 (73)
203 PF05843 Suf: Suppressor of fo 98.7 7.4E-07 1.6E-11 79.1 15.9 138 184-321 3-141 (280)
204 PF13371 TPR_9: Tetratricopept 98.7 9.5E-08 2.1E-12 65.9 8.1 62 89-150 4-65 (73)
205 KOG4234 TPR repeat-containing 98.7 4.2E-07 9E-12 72.2 11.8 114 48-161 97-215 (271)
206 KOG0985 Vesicle coat protein c 98.7 6.2E-05 1.3E-09 74.3 28.4 192 18-242 1055-1246(1666)
207 KOG4234 TPR repeat-containing 98.7 4.9E-07 1.1E-11 71.8 11.9 107 83-189 98-209 (271)
208 PF05843 Suf: Suppressor of fo 98.7 1.9E-06 4.2E-11 76.5 17.1 133 116-248 3-139 (280)
209 KOG3616 Selective LIM binding 98.6 6.2E-05 1.3E-09 71.8 26.8 49 22-72 455-503 (1636)
210 KOG2796 Uncharacterized conser 98.6 0.00016 3.5E-09 60.5 25.0 227 79-321 68-320 (366)
211 KOG3616 Selective LIM binding 98.6 4.2E-05 9.1E-10 72.9 23.8 295 52-387 712-1030(1636)
212 PF13424 TPR_12: Tetratricopep 98.6 1.2E-07 2.7E-12 66.3 5.6 67 250-316 5-75 (78)
213 KOG4555 TPR repeat-containing 98.6 6.9E-06 1.5E-10 60.6 14.1 99 220-318 47-146 (175)
214 KOG2300 Uncharacterized conser 98.5 0.00067 1.4E-08 61.9 34.0 340 12-354 47-518 (629)
215 KOG1586 Protein required for f 98.5 7.3E-05 1.6E-09 61.3 20.9 103 221-323 118-231 (288)
216 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.2E-06 2.6E-11 79.8 12.0 69 211-279 70-141 (453)
217 KOG1586 Protein required for f 98.5 6E-05 1.3E-09 61.8 19.7 127 162-288 87-233 (288)
218 KOG2396 HAT (Half-A-TPR) repea 98.4 0.0013 2.7E-08 60.6 32.8 86 3-89 97-183 (568)
219 KOG4507 Uncharacterized conser 98.4 2.2E-05 4.8E-10 72.8 17.8 111 3-113 205-316 (886)
220 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 4.7E-06 1E-10 76.0 13.3 67 77-143 72-141 (453)
221 PF07079 DUF1347: Protein of u 98.4 0.0013 2.8E-08 59.7 34.5 130 13-143 8-157 (549)
222 KOG2610 Uncharacterized conser 98.4 0.0001 2.2E-09 63.9 18.8 158 120-277 109-274 (491)
223 KOG2610 Uncharacterized conser 98.4 0.0001 2.3E-09 63.8 18.7 161 154-314 109-274 (491)
224 KOG4555 TPR repeat-containing 98.4 2.3E-05 5.1E-10 57.8 12.6 94 85-178 48-145 (175)
225 PF13424 TPR_12: Tetratricopep 98.3 1.3E-06 2.9E-11 61.0 5.7 25 117-141 49-73 (78)
226 PF06552 TOM20_plant: Plant sp 98.3 9.3E-06 2E-10 64.1 10.7 65 62-126 7-81 (186)
227 KOG1585 Protein required for f 98.3 0.00035 7.5E-09 57.9 19.9 117 227-344 121-250 (308)
228 KOG0985 Vesicle coat protein c 98.3 0.0055 1.2E-07 61.3 31.4 225 23-274 1087-1336(1666)
229 PF06552 TOM20_plant: Plant sp 98.3 1.8E-05 3.9E-10 62.5 11.8 87 96-182 7-114 (186)
230 PF10300 DUF3808: Protein of u 98.3 0.0015 3.4E-08 62.5 27.3 177 170-349 179-375 (468)
231 PF02259 FAT: FAT domain; Int 98.3 0.00092 2E-08 62.3 25.3 188 17-210 4-212 (352)
232 PF02259 FAT: FAT domain; Int 98.3 0.00093 2E-08 62.2 24.9 304 52-384 4-341 (352)
233 PF13281 DUF4071: Domain of un 98.2 0.00037 8E-09 63.1 20.6 168 152-320 145-338 (374)
234 PF04184 ST7: ST7 protein; In 98.2 0.00036 7.8E-09 64.2 20.3 121 51-173 173-320 (539)
235 KOG1585 Protein required for f 98.2 0.00088 1.9E-08 55.6 20.6 202 81-312 32-252 (308)
236 PF13428 TPR_14: Tetratricopep 98.2 3.6E-06 7.7E-11 51.0 5.2 40 48-87 3-42 (44)
237 PF04184 ST7: ST7 protein; In 98.2 0.00018 3.9E-09 66.1 17.1 188 85-285 173-381 (539)
238 PF10345 Cohesin_load: Cohesin 98.2 0.011 2.3E-07 59.3 32.4 312 27-339 37-467 (608)
239 PF13428 TPR_14: Tetratricopep 98.2 6E-06 1.3E-10 50.0 5.2 35 152-186 5-39 (44)
240 PF13281 DUF4071: Domain of un 98.2 0.0018 3.9E-08 58.8 23.0 170 81-251 142-340 (374)
241 PF10345 Cohesin_load: Cohesin 98.1 0.012 2.5E-07 59.0 32.0 373 10-384 58-566 (608)
242 COG3118 Thioredoxin domain-con 98.1 0.00044 9.5E-09 59.4 17.5 150 47-197 135-287 (304)
243 KOG1550 Extracellular protein 98.1 0.0087 1.9E-07 58.9 28.4 274 27-317 228-539 (552)
244 KOG4642 Chaperone-dependent E3 98.1 3.5E-05 7.5E-10 63.4 9.6 91 53-143 17-107 (284)
245 KOG1550 Extracellular protein 98.1 0.0029 6.3E-08 62.2 24.3 264 9-283 242-542 (552)
246 KOG4642 Chaperone-dependent E3 98.0 4.3E-05 9.4E-10 62.9 9.6 95 14-109 13-107 (284)
247 KOG0530 Protein farnesyltransf 98.0 0.0022 4.7E-08 54.0 19.2 171 58-228 55-233 (318)
248 PF13431 TPR_17: Tetratricopep 98.0 5.7E-06 1.2E-10 46.6 3.0 33 309-341 1-33 (34)
249 KOG0530 Protein farnesyltransf 98.0 0.0037 8.1E-08 52.6 20.5 206 20-226 52-269 (318)
250 COG3118 Thioredoxin domain-con 98.0 0.00053 1.2E-08 58.9 16.0 158 13-172 136-296 (304)
251 KOG4507 Uncharacterized conser 98.0 0.00096 2.1E-08 62.4 18.7 115 34-149 202-318 (886)
252 KOG0545 Aryl-hydrocarbon recep 98.0 0.00031 6.7E-09 58.2 13.5 68 82-149 232-299 (329)
253 PF10300 DUF3808: Protein of u 98.0 0.00074 1.6E-08 64.7 18.2 158 157-316 197-376 (468)
254 COG2909 MalT ATP-dependent tra 97.9 0.028 6.1E-07 55.9 29.3 303 9-314 345-686 (894)
255 PF13431 TPR_17: Tetratricopep 97.9 9.6E-06 2.1E-10 45.6 2.7 32 239-270 2-33 (34)
256 PF08424 NRDE-2: NRDE-2, neces 97.9 0.0016 3.4E-08 59.3 18.6 117 201-317 50-184 (321)
257 KOG0545 Aryl-hydrocarbon recep 97.9 0.0005 1.1E-08 57.0 12.8 114 47-184 179-300 (329)
258 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.0072 1.6E-07 55.0 20.9 238 102-352 290-533 (660)
259 PF08631 SPO22: Meiosis protei 97.8 0.021 4.4E-07 51.0 25.1 26 289-314 248-273 (278)
260 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0024 5.3E-08 58.1 17.5 110 67-176 6-130 (321)
261 KOG0376 Serine-threonine phosp 97.8 5.1E-05 1.1E-09 69.2 6.4 103 53-155 11-113 (476)
262 COG2909 MalT ATP-dependent tra 97.8 0.053 1.1E-06 54.1 31.5 295 46-346 347-684 (894)
263 KOG0376 Serine-threonine phosp 97.8 5.9E-05 1.3E-09 68.8 6.4 112 13-125 6-117 (476)
264 PF00515 TPR_1: Tetratricopept 97.7 8.8E-05 1.9E-09 41.9 4.8 31 289-319 3-33 (34)
265 COG2976 Uncharacterized protei 97.7 0.0019 4.2E-08 51.9 13.7 117 268-384 70-191 (207)
266 PF03704 BTAD: Bacterial trans 97.7 0.0015 3.3E-08 51.9 13.6 62 288-349 63-124 (146)
267 KOG2041 WD40 repeat protein [G 97.7 0.012 2.7E-07 56.5 21.0 188 26-241 678-877 (1189)
268 PF07719 TPR_2: Tetratricopept 97.7 0.00013 2.9E-09 41.2 5.0 32 289-320 3-34 (34)
269 PF07079 DUF1347: Protein of u 97.7 0.043 9.3E-07 50.3 31.4 130 48-177 8-157 (549)
270 PF07719 TPR_2: Tetratricopept 97.7 9.9E-05 2.1E-09 41.7 4.3 32 251-282 2-33 (34)
271 KOG0551 Hsp90 co-chaperone CNS 97.7 0.0021 4.7E-08 55.9 14.0 99 46-144 81-183 (390)
272 PF00515 TPR_1: Tetratricopept 97.6 0.00011 2.4E-09 41.5 4.3 30 48-77 3-32 (34)
273 PF03704 BTAD: Bacterial trans 97.6 0.0027 5.8E-08 50.5 13.5 58 117-174 65-122 (146)
274 KOG0890 Protein kinase of the 97.6 0.17 3.6E-06 56.1 29.7 292 16-317 1388-1732(2382)
275 KOG2396 HAT (Half-A-TPR) repea 97.6 0.069 1.5E-06 49.7 30.6 92 28-120 88-180 (568)
276 PRK13184 pknD serine/threonine 97.5 0.15 3.2E-06 52.8 29.0 329 14-349 478-868 (932)
277 COG0790 FOG: TPR repeat, SEL1 97.5 0.059 1.3E-06 48.6 22.5 129 129-264 92-236 (292)
278 PF04910 Tcf25: Transcriptiona 97.5 0.0062 1.4E-07 56.0 16.0 171 209-387 33-228 (360)
279 COG2976 Uncharacterized protei 97.5 0.0095 2.1E-07 48.1 14.6 93 119-212 94-189 (207)
280 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0068 1.5E-07 53.0 14.1 100 81-180 82-185 (390)
281 COG0790 FOG: TPR repeat, SEL1 97.4 0.082 1.8E-06 47.7 24.5 157 24-189 54-230 (292)
282 PF08631 SPO22: Meiosis protei 97.4 0.079 1.7E-06 47.3 25.0 53 125-177 4-65 (278)
283 KOG0890 Protein kinase of the 97.4 0.37 7.9E-06 53.6 29.2 114 215-330 1669-1798(2382)
284 PF04910 Tcf25: Transcriptiona 97.3 0.0044 9.6E-08 57.0 12.6 178 24-214 23-225 (360)
285 KOG1308 Hsp70-interacting prot 97.3 0.00026 5.6E-09 61.8 3.7 90 193-282 125-214 (377)
286 KOG0128 RNA-binding protein SA 97.2 0.25 5.5E-06 49.0 33.0 342 4-350 106-526 (881)
287 PF13181 TPR_8: Tetratricopept 97.2 0.00074 1.6E-08 38.0 4.3 31 289-319 3-33 (34)
288 KOG1308 Hsp70-interacting prot 97.2 0.00048 1E-08 60.1 4.3 123 53-176 121-243 (377)
289 KOG2041 WD40 repeat protein [G 97.1 0.32 7E-06 47.3 26.5 178 6-207 688-877 (1189)
290 PF13181 TPR_8: Tetratricopept 97.1 0.00084 1.8E-08 37.8 3.4 31 251-281 2-32 (34)
291 KOG1464 COP9 signalosome, subu 97.0 0.097 2.1E-06 44.6 16.3 206 59-264 40-286 (440)
292 PF13174 TPR_6: Tetratricopept 96.9 0.0027 5.7E-08 35.3 4.5 29 117-145 3-31 (33)
293 KOG1464 COP9 signalosome, subu 96.9 0.099 2.1E-06 44.6 15.1 50 93-142 40-93 (440)
294 PF09613 HrpB1_HrpK: Bacterial 96.8 0.03 6.5E-07 44.0 11.1 77 53-129 17-93 (160)
295 KOG3783 Uncharacterized conser 96.8 0.21 4.5E-06 47.2 18.1 77 66-144 253-333 (546)
296 PF13174 TPR_6: Tetratricopept 96.8 0.0032 7E-08 35.0 4.3 31 150-180 2-32 (33)
297 PF09613 HrpB1_HrpK: Bacterial 96.8 0.033 7.2E-07 43.8 10.8 83 82-164 12-94 (160)
298 PRK15180 Vi polysaccharide bio 96.7 0.012 2.7E-07 54.0 9.1 125 159-283 300-424 (831)
299 PF13176 TPR_7: Tetratricopept 96.6 0.0044 9.5E-08 35.3 4.1 25 290-314 2-26 (36)
300 PF04781 DUF627: Protein of un 96.6 0.042 9E-07 40.1 9.9 44 133-176 63-106 (111)
301 PF14561 TPR_20: Tetratricopep 96.6 0.035 7.5E-07 39.5 9.4 45 67-111 9-53 (90)
302 KOG1538 Uncharacterized conser 96.6 0.34 7.3E-06 46.7 18.2 81 54-139 564-657 (1081)
303 PRK10941 hypothetical protein; 96.6 0.031 6.6E-07 49.0 10.8 70 218-287 183-252 (269)
304 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.02 4.3E-07 35.7 6.7 31 254-284 5-35 (53)
305 PF04781 DUF627: Protein of un 96.5 0.038 8.3E-07 40.3 9.1 27 305-331 62-88 (111)
306 PF14561 TPR_20: Tetratricopep 96.5 0.047 1E-06 38.8 9.5 64 100-163 8-73 (90)
307 PF08492 SRP72: SRP72 RNA-bind 96.5 0.0013 2.8E-08 41.5 1.2 22 446-467 38-59 (59)
308 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.027 5.8E-07 35.2 7.0 42 289-330 3-44 (53)
309 PRK11619 lytic murein transgly 96.5 1.2 2.5E-05 44.9 34.7 130 13-154 35-169 (644)
310 COG4649 Uncharacterized protei 96.5 0.33 7.2E-06 38.6 16.6 118 58-175 70-194 (221)
311 KOG3824 Huntingtin interacting 96.4 0.016 3.5E-07 50.1 7.8 70 87-156 123-192 (472)
312 KOG3783 Uncharacterized conser 96.4 0.87 1.9E-05 43.2 22.4 109 97-207 250-371 (546)
313 KOG1538 Uncharacterized conser 96.4 0.73 1.6E-05 44.6 19.1 239 19-313 564-830 (1081)
314 PRK10941 hypothetical protein; 96.4 0.047 1E-06 47.8 10.9 65 154-218 187-251 (269)
315 KOG3824 Huntingtin interacting 96.4 0.016 3.4E-07 50.1 7.6 65 124-188 126-190 (472)
316 PF13176 TPR_7: Tetratricopept 96.4 0.0072 1.6E-07 34.4 3.9 21 119-139 4-24 (36)
317 PRK15180 Vi polysaccharide bio 96.3 0.9 2E-05 42.3 22.8 109 3-112 315-423 (831)
318 KOG2422 Uncharacterized conser 96.3 0.25 5.4E-06 47.0 15.4 137 247-383 281-450 (665)
319 PF10602 RPN7: 26S proteasome 96.2 0.095 2.1E-06 42.9 11.2 66 251-316 37-102 (177)
320 TIGR02561 HrpB1_HrpK type III 96.2 0.35 7.6E-06 37.5 13.0 71 93-163 23-93 (153)
321 KOG0128 RNA-binding protein SA 96.2 1.6 3.5E-05 43.7 27.5 339 5-348 141-561 (881)
322 COG5191 Uncharacterized conser 96.1 0.019 4.1E-07 49.7 6.5 88 103-190 96-184 (435)
323 KOG2422 Uncharacterized conser 96.1 0.8 1.7E-05 43.7 17.3 51 224-274 350-402 (665)
324 COG3914 Spy Predicted O-linked 96.1 0.59 1.3E-05 44.7 16.5 121 65-185 50-179 (620)
325 PF04053 Coatomer_WDAD: Coatom 96.0 0.48 1E-05 45.1 16.2 102 185-313 298-399 (443)
326 COG3914 Spy Predicted O-linked 96.0 0.66 1.4E-05 44.4 16.6 120 165-284 48-176 (620)
327 TIGR02561 HrpB1_HrpK type III 95.9 0.57 1.2E-05 36.4 13.7 69 196-264 24-92 (153)
328 KOG1839 Uncharacterized protei 95.9 0.13 2.9E-06 53.6 12.7 133 11-143 932-1086(1236)
329 PF04053 Coatomer_WDAD: Coatom 95.9 0.77 1.7E-05 43.7 17.0 156 20-207 270-427 (443)
330 PF09986 DUF2225: Uncharacteri 95.9 0.13 2.9E-06 43.5 10.8 66 251-316 119-194 (214)
331 COG5191 Uncharacterized conser 95.9 0.029 6.3E-07 48.7 6.6 88 170-257 95-183 (435)
332 PF12968 DUF3856: Domain of Un 95.8 0.28 6E-06 36.2 10.5 55 261-315 20-83 (144)
333 smart00028 TPR Tetratricopepti 95.8 0.017 3.8E-07 31.4 3.8 28 291-318 5-32 (34)
334 COG1747 Uncharacterized N-term 95.8 1.8 3.8E-05 40.9 21.3 94 114-210 66-159 (711)
335 KOG3364 Membrane protein invol 95.8 0.26 5.6E-06 37.3 10.3 72 251-324 33-108 (149)
336 PF10602 RPN7: 26S proteasome 95.7 0.2 4.4E-06 41.0 10.9 100 218-317 38-143 (177)
337 smart00028 TPR Tetratricopepti 95.7 0.023 5E-07 30.9 4.0 22 52-73 7-28 (34)
338 PF12968 DUF3856: Domain of Un 95.6 0.51 1.1E-05 34.9 11.0 90 18-107 16-127 (144)
339 PRK11619 lytic murein transgly 95.5 3.1 6.8E-05 41.9 35.6 52 292-345 412-463 (644)
340 COG4976 Predicted methyltransf 95.4 0.024 5.3E-07 46.9 4.5 56 92-147 7-62 (287)
341 PF09986 DUF2225: Uncharacteri 95.4 0.21 4.6E-06 42.3 10.2 87 264-350 91-194 (214)
342 COG4649 Uncharacterized protei 95.4 1.1 2.4E-05 35.8 17.5 121 193-315 69-195 (221)
343 COG1747 Uncharacterized N-term 95.4 2.6 5.6E-05 39.9 21.5 78 62-142 82-159 (711)
344 COG4976 Predicted methyltransf 95.3 0.029 6.2E-07 46.5 4.5 56 194-249 7-62 (287)
345 KOG3364 Membrane protein invol 95.3 0.51 1.1E-05 35.8 10.4 75 44-118 30-109 (149)
346 KOG1839 Uncharacterized protei 95.1 0.4 8.7E-06 50.3 12.9 164 186-349 936-1127(1236)
347 COG5159 RPN6 26S proteasome re 94.9 2.3 5.1E-05 36.9 19.4 198 15-212 7-236 (421)
348 PF13041 PPR_2: PPR repeat fam 94.9 0.12 2.6E-06 32.0 5.6 47 10-56 2-48 (50)
349 KOG1463 26S proteasome regulat 94.6 3.3 7E-05 37.0 20.3 267 15-281 8-318 (411)
350 KOG4814 Uncharacterized conser 94.5 0.97 2.1E-05 43.7 12.7 97 253-349 357-456 (872)
351 KOG4814 Uncharacterized conser 94.5 3.6 7.8E-05 40.1 16.4 91 189-279 361-457 (872)
352 PRK13184 pknD serine/threonine 94.5 7.4 0.00016 40.9 25.6 97 53-150 482-588 (932)
353 PF11207 DUF2989: Protein of u 94.5 0.63 1.4E-05 38.3 10.1 76 59-135 119-199 (203)
354 KOG1310 WD40 repeat protein [G 94.4 0.15 3.3E-06 47.8 7.2 91 58-148 386-479 (758)
355 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.34 7.3E-06 32.9 6.8 54 260-313 16-69 (80)
356 PF13374 TPR_10: Tetratricopep 94.3 0.12 2.6E-06 30.3 4.5 28 289-316 4-31 (42)
357 KOG1310 WD40 repeat protein [G 94.3 0.22 4.8E-06 46.8 7.8 87 95-181 389-478 (758)
358 PF12862 Apc5: Anaphase-promot 93.9 0.29 6.3E-06 35.2 6.6 57 261-317 9-71 (94)
359 PF04097 Nic96: Nup93/Nic96; 93.8 8.4 0.00018 38.9 23.5 225 154-384 264-536 (613)
360 PF13374 TPR_10: Tetratricopep 93.8 0.13 2.7E-06 30.2 3.8 29 251-279 3-31 (42)
361 KOG0529 Protein geranylgeranyl 93.7 4.3 9.3E-05 37.4 14.6 131 63-193 46-194 (421)
362 KOG3807 Predicted membrane pro 93.7 4.8 0.0001 35.8 17.5 22 369-390 379-400 (556)
363 PF07721 TPR_4: Tetratricopept 93.7 0.13 2.8E-06 26.6 3.2 23 13-35 3-25 (26)
364 KOG0529 Protein geranylgeranyl 93.4 4.3 9.2E-05 37.4 14.0 165 97-261 46-240 (421)
365 PF11207 DUF2989: Protein of u 93.1 1.6 3.5E-05 36.0 10.1 72 130-202 122-198 (203)
366 COG3629 DnrI DNA-binding trans 93.0 1 2.2E-05 39.6 9.4 64 114-177 153-216 (280)
367 COG2912 Uncharacterized conser 93.0 0.9 2E-05 39.3 9.0 67 220-286 185-251 (269)
368 COG3629 DnrI DNA-binding trans 93.0 0.85 1.8E-05 40.0 9.0 65 79-143 152-216 (280)
369 COG2912 Uncharacterized conser 92.7 1 2.3E-05 39.0 8.9 61 191-251 190-250 (269)
370 PF00244 14-3-3: 14-3-3 protei 92.3 6.9 0.00015 33.8 15.5 49 267-315 143-197 (236)
371 smart00386 HAT HAT (Half-A-TPR 92.2 0.46 1E-05 25.8 4.4 31 301-331 1-31 (33)
372 PF12862 Apc5: Anaphase-promot 92.0 0.96 2.1E-05 32.5 7.0 55 227-281 9-72 (94)
373 PF12854 PPR_1: PPR repeat 92.0 0.41 9E-06 26.7 4.0 28 44-71 5-32 (34)
374 KOG2581 26S proteasome regulat 91.9 10 0.00022 35.0 17.2 126 158-283 136-280 (493)
375 COG5159 RPN6 26S proteasome re 91.9 8.1 0.00018 33.8 20.9 283 50-332 7-330 (421)
376 PF07721 TPR_4: Tetratricopept 91.7 0.34 7.3E-06 25.0 3.1 21 49-69 4-24 (26)
377 COG4455 ImpE Protein of avirul 91.6 2 4.3E-05 35.8 8.9 73 224-296 9-81 (273)
378 KOG0889 Histone acetyltransfer 91.5 38 0.00082 40.7 21.0 116 218-333 2738-2858(3550)
379 PF15015 NYD-SP12_N: Spermatog 91.5 1.2 2.6E-05 40.9 8.2 88 87-174 183-288 (569)
380 PF04190 DUF410: Protein of un 91.2 9.9 0.00021 33.5 20.6 27 112-138 88-114 (260)
381 COG4941 Predicted RNA polymera 91.2 11 0.00023 33.9 17.3 189 129-327 211-405 (415)
382 PF13041 PPR_2: PPR repeat fam 91.0 1.4 3.1E-05 27.0 6.2 21 120-140 9-29 (50)
383 PF10579 Rapsyn_N: Rapsyn N-te 91.0 1.8 3.8E-05 29.5 6.7 55 15-70 10-67 (80)
384 PF07720 TPR_3: Tetratricopept 90.9 0.85 1.8E-05 25.8 4.4 18 51-68 6-23 (36)
385 PF07720 TPR_3: Tetratricopept 90.5 1.1 2.4E-05 25.4 4.7 19 152-170 5-23 (36)
386 PF15015 NYD-SP12_N: Spermatog 90.4 1.7 3.7E-05 39.9 8.1 86 18-103 183-285 (569)
387 PF11817 Foie-gras_1: Foie gra 90.1 12 0.00027 32.6 13.8 57 287-343 178-240 (247)
388 KOG2114 Vacuolar assembly/sort 89.8 25 0.00055 35.8 18.4 25 83-107 371-395 (933)
389 KOG3807 Predicted membrane pro 89.7 15 0.00032 33.0 18.3 141 52-205 190-334 (556)
390 PF12854 PPR_1: PPR repeat 89.7 0.92 2E-05 25.2 4.0 25 183-207 8-32 (34)
391 COG3947 Response regulator con 89.7 2.1 4.6E-05 37.4 7.7 61 289-349 281-341 (361)
392 smart00386 HAT HAT (Half-A-TPR 89.6 0.93 2E-05 24.5 4.1 22 131-152 4-25 (33)
393 PF10516 SHNi-TPR: SHNi-TPR; 89.5 0.7 1.5E-05 26.5 3.3 28 12-39 2-29 (38)
394 PF10516 SHNi-TPR: SHNi-TPR; 89.5 0.99 2.2E-05 25.9 4.0 28 289-316 3-30 (38)
395 PF04190 DUF410: Protein of un 89.2 15 0.00033 32.4 20.0 27 180-206 88-114 (260)
396 KOG4014 Uncharacterized conser 88.6 12 0.00026 30.4 16.4 184 8-211 31-233 (248)
397 COG3947 Response regulator con 88.6 2.3 5E-05 37.1 7.2 61 82-142 281-341 (361)
398 PF11817 Foie-gras_1: Foie gra 88.2 17 0.00037 31.8 14.8 59 254-312 182-243 (247)
399 PF00244 14-3-3: 14-3-3 protei 88.1 16 0.00036 31.5 14.2 60 14-73 4-64 (236)
400 KOG2581 26S proteasome regulat 88.0 22 0.00048 32.9 16.9 126 56-181 136-280 (493)
401 COG4455 ImpE Protein of avirul 87.9 6 0.00013 33.1 8.9 58 124-181 11-68 (273)
402 TIGR03504 FimV_Cterm FimV C-te 87.2 2 4.4E-05 25.6 4.4 23 255-277 4-26 (44)
403 KOG0276 Vesicle coat complex C 86.8 15 0.00032 35.9 12.0 100 20-142 595-694 (794)
404 KOG1463 26S proteasome regulat 86.5 24 0.00053 31.8 22.8 57 50-106 8-74 (411)
405 TIGR03504 FimV_Cterm FimV C-te 86.4 1.7 3.7E-05 25.9 3.8 25 50-74 3-27 (44)
406 COG4941 Predicted RNA polymera 86.3 25 0.00054 31.7 16.8 185 62-255 212-404 (415)
407 PF09670 Cas_Cas02710: CRISPR- 86.0 17 0.00038 34.1 12.3 59 15-74 135-197 (379)
408 PF10373 EST1_DNA_bind: Est1 D 85.9 3.9 8.4E-05 36.5 7.9 62 167-228 1-62 (278)
409 PF09670 Cas_Cas02710: CRISPR- 85.3 22 0.00047 33.4 12.6 58 52-109 137-198 (379)
410 KOG2114 Vacuolar assembly/sort 85.2 48 0.001 34.0 27.5 55 19-74 342-396 (933)
411 PF10255 Paf67: RNA polymerase 84.5 12 0.00027 35.0 10.3 59 49-107 125-191 (404)
412 PF10373 EST1_DNA_bind: Est1 D 84.4 5.2 0.00011 35.6 8.0 62 65-126 1-62 (278)
413 PF01535 PPR: PPR repeat; Int 83.9 1.9 4.1E-05 22.9 3.2 25 14-38 3-27 (31)
414 KOG2063 Vacuolar assembly/sort 83.9 60 0.0013 34.0 18.9 27 217-243 685-711 (877)
415 TIGR00756 PPR pentatricopeptid 82.9 3.3 7.2E-05 22.5 4.1 27 14-40 3-29 (35)
416 PF10255 Paf67: RNA polymerase 82.6 3.3 7.1E-05 38.7 5.8 61 14-74 125-192 (404)
417 PF01535 PPR: PPR repeat; Int 82.3 2.5 5.3E-05 22.4 3.2 26 49-74 3-28 (31)
418 PF09205 DUF1955: Domain of un 82.2 20 0.00044 27.5 9.8 56 89-144 95-150 (161)
419 KOG2063 Vacuolar assembly/sort 80.8 78 0.0017 33.2 18.8 26 117-142 507-532 (877)
420 KOG4279 Serine/threonine prote 80.8 9.4 0.0002 38.2 8.3 116 182-302 201-335 (1226)
421 PRK12798 chemotaxis protein; R 80.8 50 0.0011 31.0 20.8 216 22-242 92-321 (421)
422 PRK09687 putative lyase; Provi 80.3 43 0.00094 29.9 26.5 217 113-349 36-262 (280)
423 KOG0276 Vesicle coat complex C 79.9 65 0.0014 31.8 13.4 46 227-277 648-693 (794)
424 smart00299 CLH Clathrin heavy 79.9 26 0.00057 27.2 15.6 32 94-125 21-52 (140)
425 PF12739 TRAPPC-Trs85: ER-Golg 79.8 58 0.0013 31.1 16.4 24 294-317 377-400 (414)
426 KOG4279 Serine/threonine prote 79.4 48 0.001 33.6 12.4 100 46-146 201-319 (1226)
427 KOG0546 HSP90 co-chaperone CPR 79.4 4.3 9.2E-05 36.6 5.1 124 18-157 229-352 (372)
428 smart00299 CLH Clathrin heavy 79.3 27 0.00059 27.1 15.5 27 301-332 110-136 (140)
429 COG5536 BET4 Protein prenyltra 79.1 44 0.00096 29.4 11.6 132 200-331 92-237 (328)
430 PRK12798 chemotaxis protein; R 78.7 59 0.0013 30.6 22.4 219 53-276 87-321 (421)
431 PF04348 LppC: LppC putative l 78.2 0.68 1.5E-05 45.5 0.0 97 46-142 24-126 (536)
432 PF12739 TRAPPC-Trs85: ER-Golg 78.1 66 0.0014 30.8 16.3 28 83-110 211-238 (414)
433 TIGR00756 PPR pentatricopeptid 77.8 5.6 0.00012 21.5 3.9 26 49-74 3-28 (35)
434 TIGR03362 VI_chp_7 type VI sec 76.3 59 0.0013 29.3 15.9 37 160-196 111-147 (301)
435 PF13812 PPR_3: Pentatricopept 75.9 6.6 0.00014 21.2 3.8 25 14-38 4-28 (34)
436 KOG1497 COP9 signalosome, subu 75.9 44 0.00094 30.0 10.0 93 13-105 105-209 (399)
437 PF04097 Nic96: Nup93/Nic96; 75.5 98 0.0021 31.5 21.2 171 187-380 263-455 (613)
438 PF04348 LppC: LppC putative l 75.2 0.92 2E-05 44.6 0.0 165 10-183 23-200 (536)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 75.2 35 0.00075 26.1 12.2 43 305-347 81-125 (126)
440 PF13812 PPR_3: Pentatricopept 75.0 8.2 0.00018 20.9 4.0 27 48-74 3-29 (34)
441 PF14863 Alkyl_sulf_dimr: Alky 74.5 26 0.00057 27.4 7.8 48 82-129 72-119 (141)
442 KOG0687 26S proteasome regulat 74.3 67 0.0015 29.0 12.5 29 182-210 104-132 (393)
443 PF14863 Alkyl_sulf_dimr: Alky 73.3 36 0.00078 26.6 8.3 50 114-163 70-119 (141)
444 PF02184 HAT: HAT (Half-A-TPR) 72.5 10 0.00023 20.7 3.6 28 302-330 2-29 (32)
445 smart00101 14_3_3 14-3-3 homol 71.5 69 0.0015 27.9 18.9 25 119-143 6-30 (244)
446 KOG2561 Adaptor protein NUB1, 71.3 52 0.0011 30.9 9.8 30 287-316 267-296 (568)
447 KOG0546 HSP90 co-chaperone CPR 70.4 8.5 0.00018 34.8 4.7 70 117-186 278-347 (372)
448 KOG1920 IkappaB kinase complex 70.1 1.7E+02 0.0036 31.8 22.5 109 252-378 941-1052(1265)
449 PF13226 DUF4034: Domain of un 69.6 74 0.0016 28.2 10.3 36 164-199 115-150 (277)
450 PRK15490 Vi polysaccharide bio 67.3 62 0.0013 32.1 10.2 79 58-138 20-98 (578)
451 PF13226 DUF4034: Domain of un 66.8 94 0.002 27.6 10.6 95 132-238 61-155 (277)
452 PRK15490 Vi polysaccharide bio 66.6 79 0.0017 31.4 10.7 81 22-105 19-99 (578)
453 KOG4521 Nuclear pore complex, 66.3 2E+02 0.0043 31.2 20.5 163 183-349 921-1131(1480)
454 cd02680 MIT_calpain7_2 MIT: do 66.2 12 0.00026 25.4 3.8 17 58-74 18-34 (75)
455 smart00101 14_3_3 14-3-3 homol 65.3 93 0.002 27.1 18.8 50 303-352 144-202 (244)
456 KOG4318 Bicoid mRNA stability 64.4 1.9E+02 0.0041 30.3 14.5 215 1-242 16-230 (1088)
457 PF09477 Type_III_YscG: Bacter 64.1 55 0.0012 24.1 10.2 76 263-346 19-94 (116)
458 KOG2062 26S proteasome regulat 63.9 1.8E+02 0.0038 29.8 20.7 49 24-74 370-423 (929)
459 KOG4422 Uncharacterized conser 63.2 1.4E+02 0.003 28.3 28.9 68 289-356 524-596 (625)
460 cd02680 MIT_calpain7_2 MIT: do 63.0 16 0.00035 24.8 3.9 16 127-142 19-34 (75)
461 PF11846 DUF3366: Domain of un 62.8 31 0.00068 28.7 6.7 46 133-179 130-175 (193)
462 KOG4521 Nuclear pore complex, 62.4 2.4E+02 0.0051 30.7 16.7 164 116-283 922-1136(1480)
463 KOG1920 IkappaB kinase complex 62.2 2.4E+02 0.0052 30.7 24.2 108 218-343 941-1048(1265)
464 PF11846 DUF3366: Domain of un 61.7 29 0.00064 28.9 6.3 33 215-247 143-175 (193)
465 PHA02537 M terminase endonucle 61.7 13 0.00028 31.8 4.1 36 286-321 168-212 (230)
466 KOG2066 Vacuolar assembly/sort 61.3 2E+02 0.0044 29.6 23.0 75 19-97 364-440 (846)
467 cd02682 MIT_AAA_Arch MIT: doma 59.1 25 0.00054 23.9 4.3 24 326-349 11-34 (75)
468 TIGR03362 VI_chp_7 type VI sec 59.0 1.4E+02 0.003 27.0 15.7 190 13-211 51-279 (301)
469 KOG2062 26S proteasome regulat 59.0 2.2E+02 0.0047 29.2 21.1 88 17-111 328-426 (929)
470 TIGR02710 CRISPR-associated pr 56.0 1.8E+02 0.0039 27.3 12.7 55 17-71 136-196 (380)
471 KOG1497 COP9 signalosome, subu 55.4 1.6E+02 0.0035 26.6 11.0 94 81-174 104-210 (399)
472 cd02682 MIT_AAA_Arch MIT: doma 54.6 35 0.00076 23.2 4.4 26 290-315 9-34 (75)
473 KOG4151 Myosin assembly protei 54.5 57 0.0012 33.2 7.6 102 17-118 59-165 (748)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 54.4 96 0.0021 23.7 13.7 27 147-173 98-124 (126)
475 PF00637 Clathrin: Region in C 54.0 0.92 2E-05 35.7 -3.8 81 19-105 15-95 (143)
476 PF04090 RNA_pol_I_TF: RNA pol 53.6 1.3E+02 0.0029 25.1 10.7 60 13-73 43-103 (199)
477 KOG4014 Uncharacterized conser 53.1 1.3E+02 0.0028 24.8 15.5 183 145-347 31-230 (248)
478 smart00777 Mad3_BUB1_I Mad3/BU 52.8 1E+02 0.0022 23.6 7.7 113 233-345 2-123 (125)
479 PHA02537 M terminase endonucle 52.5 37 0.00081 29.1 5.3 24 122-145 91-114 (230)
480 PF04090 RNA_pol_I_TF: RNA pol 51.8 1.4E+02 0.0031 25.0 10.7 59 116-174 43-102 (199)
481 KOG2561 Adaptor protein NUB1, 51.0 2.3E+02 0.0049 27.0 10.7 24 151-174 166-189 (568)
482 COG5536 BET4 Protein prenyltra 50.9 1.8E+02 0.0039 25.8 16.3 124 134-257 94-234 (328)
483 PF04212 MIT: MIT (microtubule 50.4 47 0.001 22.0 4.7 25 291-315 9-33 (69)
484 COG4259 Uncharacterized protei 50.3 95 0.0021 22.5 6.6 33 82-114 74-106 (121)
485 KOG0686 COP9 signalosome, subu 50.2 2.3E+02 0.0049 26.8 15.1 62 218-279 152-216 (466)
486 COG5187 RPN7 26S proteasome re 49.8 1.9E+02 0.0041 25.8 16.8 102 216-317 115-222 (412)
487 PF04840 Vps16_C: Vps16, C-ter 49.6 2.1E+02 0.0045 26.2 24.8 229 20-275 35-287 (319)
488 PRK09687 putative lyase; Provi 49.2 2E+02 0.0043 25.8 29.0 59 45-106 36-98 (280)
489 KOG4422 Uncharacterized conser 48.5 2.5E+02 0.0054 26.8 36.3 64 319-382 520-591 (625)
490 TIGR02710 CRISPR-associated pr 48.0 2.4E+02 0.0053 26.5 12.8 54 52-105 136-196 (380)
491 KOG0686 COP9 signalosome, subu 47.3 2.5E+02 0.0055 26.5 14.9 94 150-243 152-256 (466)
492 PF10952 DUF2753: Protein of u 47.3 96 0.0021 23.5 6.0 23 291-313 54-76 (140)
493 COG5187 RPN7 26S proteasome re 47.0 2.1E+02 0.0046 25.5 14.3 99 114-212 115-222 (412)
494 cd02681 MIT_calpain7_1 MIT: do 46.7 42 0.00091 22.9 3.9 27 290-316 9-35 (76)
495 smart00671 SEL1 Sel1-like repe 46.7 48 0.001 18.0 3.9 27 13-39 3-33 (36)
496 cd00280 TRFH Telomeric Repeat 46.3 1.7E+02 0.0036 24.2 9.1 45 294-339 118-162 (200)
497 PF08626 TRAPPC9-Trs120: Trans 46.0 3.5E+02 0.0075 30.3 12.7 167 11-178 242-475 (1185)
498 cd02679 MIT_spastin MIT: domai 45.7 88 0.0019 21.6 5.3 63 301-378 3-65 (79)
499 TIGR02996 rpt_mate_G_obs repea 45.4 63 0.0014 19.0 3.9 32 309-340 4-35 (42)
500 PF02064 MAS20: MAS20 protein 45.3 72 0.0016 24.2 5.3 31 292-322 68-98 (121)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-50 Score=362.30 Aligned_cols=388 Identities=15% Similarity=0.149 Sum_probs=376.3
Q ss_pred CcccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845 1 MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 1 l~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
|.+++.+|.-.+++-.+|.++...|++++|+..|+.+++.. |+..++|.++|.++...|+.+.|..+|..+++++|...
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh
Confidence 35678999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
.+...+|.++...|+..+|..+|.++++..|....+|.++|.++...|+...|+..|+++++++|+..++|+++|.+|..
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
.+.++.|+.+|.+++...|++..++-++|.+|..+|..+-|+..|+++++..|..+.++.++|..+...|+..+|..+|.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 320 (476)
+++...|+.+++.+++|.++..+|.+++|..+|.++++..|.... ...++|.+|.+.|++++|+.+|+.++.+.|..
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa---a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA---AHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh---hhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 999999999999999999999999999999999999999998844 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCCC
Q 011845 321 YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSAY 392 (476)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 392 (476)
.+++.++|..|..+|+...|+..|.++++..| +...+++.++...|+..+|+..|+.++++.|+.+++..+.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 99999999999999999999999999999777 4567899999999999999999999999999999987655
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-46 Score=333.80 Aligned_cols=351 Identities=18% Similarity=0.176 Sum_probs=342.2
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
.++++.|++.++|..+|.++..+|+.+.|..+|..+++.+ |....+...+|.++...|+.++|..+|.++++..|....
T Consensus 141 ~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi 219 (966)
T KOG4626|consen 141 AAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI 219 (966)
T ss_pred HHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee
Confidence 3678999999999999999999999999999999999998 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
+|..+|.++..+|+...|+..|+++++++|....+|+++|.+|...+.++.|+..|.+++...|++..++-++|.+|..+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
|..+-|+..|+++++..|+.+.++.+++..+...|+..+|..+|.+++..+|.++++.+++|.++..+|.+++|..+|.+
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY 321 (476)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 321 (476)
+++..|+...++.++|.+|.++|++++|+.+|+.++.+.|.. ...+.++|..|...|+.+.|+.+|.+++..+|...
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f---Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF---ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH---HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 999999999999999999999999999999999999999998 45689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc
Q 011845 322 ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD 356 (476)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 356 (476)
+++.+|+.++...|+..+|+.-|+.++...|+..+
T Consensus 457 eAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 457 EAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 99999999999999999999999999998776554
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.5e-37 Score=303.80 Aligned_cols=369 Identities=16% Similarity=0.167 Sum_probs=321.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..+..+|..++..|+|++|+..|++++... | ++..+..+|.|+..+|++++|+..++++++.+|++..+|+.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECK-P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999999987 5 47889999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHhhccCCCcH------------------------------HHHHHHHH-------------------
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNE------------------------------YIYQTLAL------------------- 122 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~------------------------------~~~~~la~------------------- 122 (476)
.+|++++|+..|..+...++.+. ..+..++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999987766544332111 11111111
Q ss_pred --------------HH---HHhccHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 123 --------------LE---AKANRYEQARNLFRQATKCN---PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 123 --------------~~---~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
.+ ...+++++|+..|++++... |....++..+|.++...|++++|+..|++++..+|.+.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 11 11357999999999999864 67778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK 262 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (476)
..|..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++...+..+|.++..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH------HHHHH-HHHHcC
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW------MTWAQ-LEEDQG 335 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~~-~~~~~g 335 (476)
.|++++|+..|++++...|+++. ++..+|.++...|++++|+..|++++.+.|++...+ ...+. ++...|
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~---~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPD---VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999999999855 467779999999999999999999999998754322 22233 334479
Q ss_pred ChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhccccCC
Q 011845 336 NSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNLEKSS 385 (476)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 385 (476)
++++|..++++++...|+. +..+|+++...|++++|+..|++++++.+..
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 9999999999998876644 4678999999999999999999999987763
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-36 Score=319.31 Aligned_cols=379 Identities=17% Similarity=0.153 Sum_probs=310.4
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
+...|.++..+..+|.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|++++..+|.+..++
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 45678888889999999999999999999999988877 78888888889999999999999999999988888888888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888998888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
+++|+..|+++++..|.++..+..++.++...|++++|+..+++++...|++..++..++.++...|++++|+.+++.+.
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT 323 (476)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 323 (476)
+..|.++..+..+|.++...|++++|+..|++++...|++. .+..++.++...|++++|...+++++..+|++..+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888888888888888888888888777762 34556777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845 324 WMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKE 388 (476)
Q Consensus 324 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 388 (476)
+..++.++...|++++|...|+++++..|. +...+++++...|+ .+|+..+++++.+.|+++..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 777777777777777777777777765542 33456666666666 66777777776666666544
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-36 Score=317.36 Aligned_cols=382 Identities=18% Similarity=0.161 Sum_probs=315.2
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
+++.+|+.......++..+...|++++|+..+++++... |.++..+..+|.++...|++++|+..|++++..+|.+..+
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 456677777788888888888888888888888887766 6777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE 162 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 162 (476)
+..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
++++|+..+++++...|.++..|..++.++...|++++|+..|+++++..|.++.++..++.++...|++++|+..|+++
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845 243 SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 322 (476)
++..|++...+..++.++...|++++|+..++.+....|.+... +..+|.++...|++++|+..|++++...|++ .
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG---FELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 88888888888888888888888888888888888887776443 5566888888888888888888888888777 6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 323 TWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
.+..++.++...|++++|...++.++...| .+...++.++...|++++|+..|+++++..|+++...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 677788888888888888888888877655 3445677788888888888888888888888766544
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-35 Score=294.68 Aligned_cols=349 Identities=15% Similarity=0.118 Sum_probs=306.5
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc--
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-- 79 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 79 (476)
+++...|+ +..+..+|.+|...|++++|+..+.++++.+ |.+..+++.+|.++..+|++++|+..|..+...++.+
T Consensus 152 ~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 152 KAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred HHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 46778885 7789999999999999999999999999998 8999999999999999999999998776654332211
Q ss_pred ----------------------------HHHHHHHHH---------------------------------HH---HHhCC
Q 011845 80 ----------------------------IAAWHGWAV---------------------------------LE---LRQGN 95 (476)
Q Consensus 80 ----------------------------~~~~~~la~---------------------------------~~---~~~~~ 95 (476)
...+..++. .+ ...++
T Consensus 230 ~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 230 QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 111111111 11 12357
Q ss_pred HHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845 96 IKKARQLLAKGLKF---CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172 (476)
Q Consensus 96 ~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 172 (476)
+++|+..|++++.. .|....++..+|.++...|++++|+..|++++..+|.....|..+|.++...|++++|+..|+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999976 477788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV 252 (476)
Q Consensus 173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 252 (476)
++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.+
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845 253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA 328 (476)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 328 (476)
+..+|.++...|++++|+..|++++.+.|..... ..++...+.++...|++++|..++++++.++|++..++..+|
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999999999999999999999998875332 112222233444579999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhh
Q 011845 329 QLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
.++.+.|++++|+..++++.+...
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999887544
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-35 Score=312.37 Aligned_cols=382 Identities=16% Similarity=0.119 Sum_probs=311.6
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC---------------------------------CCChHH-
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ---------------------------------GENPYI- 48 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------~~~~~~- 48 (476)
+++.+|+++.+++.+|.++...|++++|+..+++++...+ |.+...
T Consensus 173 ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 173 LNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 4677899999999999999999999999999998764321 111000
Q ss_pred -------------------HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc
Q 011845 49 -------------------WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF 109 (476)
Q Consensus 49 -------------------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 109 (476)
....|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0133677888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 110 CGGNEY--------------IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175 (476)
Q Consensus 110 ~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 175 (476)
+|++.. .....+.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 887642 123457888899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHhcCC
Q 011845 176 QASPKNRFAWHVWGI------------------------------------------FEANMGFIDKGKKLLKIGHAVNP 213 (476)
Q Consensus 176 ~~~~~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~~~~~~~ 213 (476)
+.+|++..++..++. ++...|++++|+..|+++++.+|
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P 492 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP 492 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998766654443 34467899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH----------------
Q 011845 214 RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL---------------- 277 (476)
Q Consensus 214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~---------------- 277 (476)
+++.+++.+|.++...|++++|+..++++++..|+++..++.++..+...|++++|+..++++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 9999999999999999999999999999999999888887777766666666666666655432
Q ss_pred ------------------------ccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845 278 ------------------------SIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED 333 (476)
Q Consensus 278 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 333 (476)
+..|.++. .+..+|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~---~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTR---IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 12344432 356678888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 334 QGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 334 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
.|++++|...++.+....| .....++.++...|++++|+..|++++...|+++.
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 8888888888888776544 33455777888888888888888888887776654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-35 Score=310.59 Aligned_cols=368 Identities=15% Similarity=0.121 Sum_probs=316.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH--------------
Q 011845 16 ALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA-------------- 81 (476)
Q Consensus 16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------------- 81 (476)
.+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 45788888999999999999999887 888899999999999999999999999999988887542
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH-----
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ----- 156 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~----- 156 (476)
....+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 123457788889999999999999999999999999999999999999999999999999998888766554443
Q ss_pred -------------------------------------HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845 157 -------------------------------------MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 157 -------------------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
++...|++++|+..|+++++.+|+++.+++.++.++...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------------
Q 011845 200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA------------------------------------- 242 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------------------------- 242 (476)
+|+..+++++...|.++..++.++..+...+++++|+..++++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988888877777777777776665542
Q ss_pred ---hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 243 ---SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 243 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
++..|.++..+..+|.++...|++++|+..|+++++..|++.. .+..++.++...|++++|++.|+++++..|+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~---a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD---ARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 2246888889999999999999999999999999999999965 4778899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---------hcchhhhhhhhcccchHHHHHHHHHhc---cccCCCC
Q 011845 320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---------VVDDASWVMGFMDIIDPALDRIKQLLN---LEKSSYK 387 (476)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 387 (476)
+..++..++.++...|++++|.+++++++...+. +....+.++...|++++|+..|++++. +.|..+.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 9999999999999999999999999999886432 334568889999999999999999985 4444444
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.7e-35 Score=288.83 Aligned_cols=364 Identities=11% Similarity=0.037 Sum_probs=329.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 88 (476)
++.......+..+.+.|++++|+..++.++... |.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 344556677788889999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR 168 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 168 (476)
++...|++++|+..|++++...|++..++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988887664 478899999999
Q ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHh
Q 011845 169 QLFERAVQASPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL----ARKLFRRAS 243 (476)
Q Consensus 169 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~~ 243 (476)
..+++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+..|++++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999999988763 344556668889999999999999999999999999999999999999999986 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT 323 (476)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 323 (476)
..+|+++.++..+|.++...|++++|+..+++++..+|+++.. +..+|.++...|++++|+..|++++..+|++..+
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a---~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV---RAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 9999999999999999999999999999999999999998654 6677999999999999999999999999999887
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845 324 WMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 324 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 386 (476)
+..++.++...|++++|...|+++++..|+.. ...+++|+..|.++++..+...
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~---------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL---------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc---------hhhHHHHHHHHHHHHHhcCCcc
Confidence 88889999999999999999999999887754 2455678888888888665543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=8.2e-34 Score=280.03 Aligned_cols=365 Identities=13% Similarity=0.023 Sum_probs=326.0
Q ss_pred HHhcCCHHHHHHHHHHhhccC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845 21 LSKQSKVAEARAIYAKGSQAT--QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK 98 (476)
Q Consensus 21 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 98 (476)
+.++.+|+.-.-+|....+.. ...+.......+..+.+.|++++|+..++.++...|.++.+++.+|.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 445666766666665554322 123344556677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845 99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 011845 179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWG 257 (476)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 257 (476)
|+++..+..++ .+...|++++|+..+++++...|. .......++.++...|++++|+..|++++...|+++.++..+|
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99988877664 478899999999999999998763 3445566788999999999999999999999999999999999
Q ss_pred HHHHHcCChhH----HHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845 258 WMEWKEGNLDT----ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED 333 (476)
Q Consensus 258 ~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 333 (476)
.++...|++++ |+..|++++..+|++.. ++..+|.++...|++++|+..+++++..+|+++.++..++.++..
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999986 89999999999999854 577889999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 334 QGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 334 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
.|++++|...++.++...|... ...+.++...|++++|+..|+++++..|++....
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~ 389 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS 389 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence 9999999999999998777542 3357788999999999999999999999987544
No 11
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=4.8e-31 Score=265.92 Aligned_cols=380 Identities=10% Similarity=-0.072 Sum_probs=281.7
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
|-++....-...+....|++++|+..+.++.... |....++..+|.++...|++++|+..|++++..+|.++.++..++
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4444445555556666666666666666665533 555556666666666666666666666666666666666666666
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH---
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN--- 164 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~--- 164 (476)
.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6666666666666666666666666666 666666666666666666666666666666666666666665544444
Q ss_pred -------------------------------------------HHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHH
Q 011845 165 -------------------------------------------LAARQLFERAVQASPKNRF-------AWHVWGIFEAN 194 (476)
Q Consensus 165 -------------------------------------------~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~ 194 (476)
++|+..++.+++..|.++. +.......+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 4455555566644333221 11221233467
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHH
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDP-VLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTA 269 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 269 (476)
.|++++|+..|+++++..|..| .+...+|.++...|++++|+..|++++...|.+ ......++.++...|++++|
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 7999999999999998865433 344447999999999999999999999888765 35677788889999999999
Q ss_pred HHHHHHHHccCCCCh------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCh
Q 011845 270 RELYERALSIDSTTE------------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNS 337 (476)
Q Consensus 270 ~~~~~~a~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 337 (476)
+..++++....|... .....+..++.++...|++++|++.+++++...|++..++..++.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 999999999877421 11235567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 338 VRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 338 ~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
++|+..+++++...|+ +....+.++...|++++|...++++++..|+++...
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999997775 446778889999999999999999999999998765
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-31 Score=250.65 Aligned_cols=388 Identities=16% Similarity=0.151 Sum_probs=276.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ--GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH 79 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 79 (476)
++...+|.||.++..++..++..|+|+.+..+...++.... +.-.+.++.+|+++..+|++++|..+|.++++.++++
T Consensus 261 ~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 261 RAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 35567888888888888888888888888888888876541 1234567888888888888888888888888888877
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 80 -IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN----RYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 80 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
.-.++.+|++++..|+++.|+.+|+++++..|++.++...+|.+|...+ ..+.|..++.++++..|.+.++|..+
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 6677788888888888888888888888888888888888888887765 56777777777777777776666655
Q ss_pred HHH--------------------------------------HHHhccHHHHHHHHHHHHHc-----CCCc-----HHHHH
Q 011845 155 SQM--------------------------------------EMQQENNLAARQLFERAVQA-----SPKN-----RFAWH 186 (476)
Q Consensus 155 a~~--------------------------------------~~~~~~~~~A~~~~~~a~~~-----~~~~-----~~~~~ 186 (476)
+.+ ++..|++.+|...|.+++.. +++. ....+
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 555 44455555666666555544 1111 12355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----
Q 011845 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK---- 262 (476)
Q Consensus 187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 262 (476)
+++.++...++++.|.+.|..+++.+|....++..+|.+....++..+|...+..++..+..++.+|..+|.++..
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 6666666666666666666666666666666666666555555666666666666666655555544444433221
Q ss_pred --------------------------------------------cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH
Q 011845 263 --------------------------------------------EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ 298 (476)
Q Consensus 263 --------------------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 298 (476)
.+.+++|+..|.++++.+|.+-.+ -..+|.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yA---ANGIgiVLA 657 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYA---ANGIGIVLA 657 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhh---ccchhhhhh
Confidence 123445666666666666666332 344567777
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----hhhhcchhhhhhhhcccchHHHH
Q 011845 299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ-----RTEVVDDASWVMGFMDIIDPALD 373 (476)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~A~~ 373 (476)
..|++.+|..+|.++.+.-.++.++|.++|.||..+|+|..|+++|+.++.. .+++...++.+++..|.+.+|..
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 7777777777777776666666778899999999999999999999988874 44677788899999999999999
Q ss_pred HHHHHhccccCCCCCCCCC
Q 011845 374 RIKQLLNLEKSSYKEPSAY 392 (476)
Q Consensus 374 ~~~~al~~~p~~~~~~~~~ 392 (476)
.+..++.+.|.++....+.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHhCCccchHHhHH
Confidence 9999999999988876443
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-31 Score=230.91 Aligned_cols=337 Identities=16% Similarity=0.143 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..+-..|+-+++.|+|++|+++|.++++.. |+.+..+.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC-PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcC-CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 456678999999999999999999999998 7779999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHH------------------Hhhcc--------------CCCc--------------------------
Q 011845 92 RQGNIKKARQLLA------------------KGLKF--------------CGGN-------------------------- 113 (476)
Q Consensus 92 ~~~~~~~A~~~~~------------------~~~~~--------------~p~~-------------------------- 113 (476)
.+|++.+|+.-.. +.++. .|.-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999998875331 11110 0000
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 114 ---------------------------------------------------EYIYQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 114 ---------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
..++...|..++-.|++-.|...|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01122233344445666667777777777
Q ss_pred cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 011845 143 CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL 222 (476)
Q Consensus 143 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 222 (476)
++|.+...|+.++.+|...++.++....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.++|.+...+..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 77766666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHH-HH
Q 011845 223 ALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVL-EQ 298 (476)
Q Consensus 223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~-~~ 298 (476)
+.+.+++++++++...|+.+.+..|+.++++...|.++..+++|++|++.|..++.+.|..... ...+.+-|.+ ..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 7777777777777777777777777777777777777777777777777777777776662110 0011111111 11
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
-.+++..|...++++++++|....++..+|.+..+.|+.++|+++|++...
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 236677777777777777777777777777777777777777777766655
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-30 Score=244.95 Aligned_cols=386 Identities=18% Similarity=0.149 Sum_probs=340.5
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
.++..|+|...++..|.+.+..|+|..|+.+|++++...|..-++....+|.|+.++|+.+.|+..|+++++++|.+..+
T Consensus 156 Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 156 VLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred HHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 46789999999999999999999999999999999998866678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---chhHHHHHHH
Q 011845 83 WHGWAVLELRQG---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK---SCASWIAWSQ 156 (476)
Q Consensus 83 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~la~ 156 (476)
+..||.+-.... .+..++..+.++...+|.+|.++..++..++..|++..+..+...++...-. -.+.++.+|+
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999998877655 4678999999999999999999999999999999999999999999987633 3456999999
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----C
Q 011845 157 MEMQQENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS----T 231 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~ 231 (476)
+|..+|++++|..+|.++++.++++ .-.++.+|..+...|+++.+..+|+++++..|++..+...+|.+|...+ .
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence 9999999999999999999999988 7778999999999999999999999999999999999999999999886 5
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC--CCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 011845 232 ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID--STTESAARCLQAWGVLEQRVGNLSAARRL 309 (476)
Q Consensus 232 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 309 (476)
.+.|..++.++++..|.+..+|..++.++.... ...++.+|..|+..- ........++.++|..++..|++.+|...
T Consensus 396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 688999999999999999999999999987644 445599999887431 11112256789999999999999999999
Q ss_pred HHHHHhh-----CCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc---hhhhhhhhcccchHHHHHHH
Q 011845 310 FRSSLNI-----NSQS-----YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD---DASWVMGFMDIIDPALDRIK 376 (476)
Q Consensus 310 ~~~al~~-----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~A~~~~~ 376 (476)
|.+++.. +++. ....++++.++...++++.|.++|..++...|...+ .++.+....+...+|...++
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 9999876 2222 235899999999999999999999999998886554 34445556689999999999
Q ss_pred HHhccccCCCCCC
Q 011845 377 QLLNLEKSSYKEP 389 (476)
Q Consensus 377 ~al~~~p~~~~~~ 389 (476)
.++..+..++.++
T Consensus 555 ~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 555 DALNIDSSNPNAR 567 (1018)
T ss_pred HHHhcccCCcHHH
Confidence 9999999998876
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.4e-29 Score=255.28 Aligned_cols=346 Identities=8% Similarity=-0.067 Sum_probs=296.6
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
...+|....++..+|.++...|++++|+..|++++... |.++.++..++.++...|++++|+..+++++..+|++.. +
T Consensus 42 ~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~ 119 (765)
T PRK10049 42 RVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-L 119 (765)
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-H
Confidence 34577888889999999999999999999999999998 889999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH-----------------------------
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR----------------------------- 134 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~----------------------------- 134 (476)
..+|.++...|++++|+..++++++..|++..++..++.++...|..++|+
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999998887766655444
Q ss_pred -----------------HHHHHHHhcCCCchhH-------HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-HHHHHHH
Q 011845 135 -----------------NLFRQATKCNPKSCAS-------WIAWSQMEMQQENNLAARQLFERAVQASPKNR-FAWHVWG 189 (476)
Q Consensus 135 -----------------~~~~~~~~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~ 189 (476)
..++.+++..|.++.. .......+...|++++|+..|+++++..+..+ .+...++
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la 279 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVA 279 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 4444445443333221 11112234677999999999999998864322 2344468
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------------CH
Q 011845 190 IFEANMGFIDKGKKLLKIGHAVNPRD----PVLLQSLALLEYKYSTANLARKLFRRASEIDPR---------------HQ 250 (476)
Q Consensus 190 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~ 250 (476)
.++...|++++|+..|++++...|.+ ......++.++...|++++|+..++++....|. ..
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 99999999999999999999888765 356777888889999999999999999988763 13
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQL 330 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 330 (476)
.++..++.++...|++++|+..+++++...|++.. ++..+|.++...|++++|++.+++++..+|++..+++.++.+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 46788999999999999999999999999999954 578889999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhhhhh
Q 011845 331 EEDQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 331 ~~~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
+...|++++|..+++.++...|+.
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999877753
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.6e-30 Score=232.86 Aligned_cols=306 Identities=14% Similarity=0.147 Sum_probs=249.4
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 13 PYVALGKVL--SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 13 ~~~~la~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
.+..+|..| ..+-+..+|+..|++.-... ++...+...+|..|+.+++|++|..+|+.+-...|-..+..-.+..++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 344444444 34556788888888843433 666778888888888888888888888888888887776666677777
Q ss_pred HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH
Q 011845 91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL 170 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 170 (476)
+...+.-+---+.+..+..+|..++.|..+|.||..+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 77766665555667777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845 171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250 (476)
Q Consensus 171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 250 (476)
|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++
T Consensus 478 fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 478 FRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred HHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 322 (476)
...+..|.++...+++++|+..+++..++.|+...+ ++.+|.+|.+.|+.+.|+..|.-|+.++|.-..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v---~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSV---FALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH---HHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888888888888888888888888888888887544 666788888888888888888888888886554
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=8.7e-28 Score=242.37 Aligned_cols=374 Identities=13% Similarity=0.010 Sum_probs=308.5
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---H
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---I 80 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~ 80 (476)
+...|.++. ....-......+.+.+|........+.. |.+...+..++....+.|++++|..+|+++....++. .
T Consensus 336 ~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 336 LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 344555553 2222222334577888888888877776 7888889999999999999999999999988753221 2
Q ss_pred HHHHHHHHHHHHhCC-------------------------H---HHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccH
Q 011845 81 AAWHGWAVLELRQGN-------------------------I---KKARQLLAKGLKFCGG--NEYIYQTLALLEAKANRY 130 (476)
Q Consensus 81 ~~~~~la~~~~~~~~-------------------------~---~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~ 130 (476)
.....++.+|..++. + ..+...+.+++...|. ++.++..+|.++.. +++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 233367777765544 2 2234445566666677 88999999999987 899
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
.+|+..+.+++...|++. ....++.++...|++++|+..|++++...|.+ ..+..+|.++...|++++|+.++++++.
T Consensus 493 ~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999754 46667778889999999999999987776654 4578889999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845 211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 290 (476)
..|.+...+..++......|++++|+..|+++++.+|+ +..+..+|.++.+.|++++|+..|++++..+|++.. .+
T Consensus 571 l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---a~ 646 (987)
T PRK09782 571 RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---YQ 646 (987)
T ss_pred cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence 99988888777777777889999999999999999996 899999999999999999999999999999999964 47
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhccc
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDI 367 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~ 367 (476)
.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|...+++++...|+ +....|++.....+
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999998774 45678999999999
Q ss_pred chHHHHHHHHHhccccCCC
Q 011845 368 IDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 368 ~~~A~~~~~~al~~~p~~~ 386 (476)
++.|.+.+++...++|+..
T Consensus 727 ~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 727 FRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhhcCccch
Confidence 9999999999999999876
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-29 Score=218.86 Aligned_cols=331 Identities=11% Similarity=0.084 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 127 (476)
.+-..|.-++..|+|++|+++|..++...|+.+..+.+++-||...|+|++.++...++++++|+...+++..+..+..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 44567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHH------------------HHHhc--------------CCCc----------------------------
Q 011845 128 NRYEQARNLFR------------------QATKC--------------NPKS---------------------------- 147 (476)
Q Consensus 128 g~~~~A~~~~~------------------~~~~~--------------~p~~---------------------------- 147 (476)
|++++|+.-.. +.++. .|.-
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 99999875332 11111 0000
Q ss_pred -------------------------------------------------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845 148 -------------------------------------------------CASWIAWSQMEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 148 -------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
..++...|..++-.|+.-.|...|+.++.++
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0112222333344455555555555555555
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
|.+...|..++.+|....+.++....|.++..++|.++.+|+..|++++-.+++++|+.-|++++.++|++...+..++.
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHH
Q 011845 259 MEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------SYITWMTWAQLEE 332 (476)
Q Consensus 259 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~ 332 (476)
+.++.++++++...|+.+....|+.+.. +...|.++...++|++|.+.|.+++.+.|. ++..+..-+.+..
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev---y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEV---YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchH---HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 5555555555555555555555555443 222355555555555555555555555555 3322222222222
Q ss_pred -HcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhcc
Q 011845 333 -DQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNL 381 (476)
Q Consensus 333 -~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~ 381 (476)
-.+++..|..+++++++.+|.. ...+|.+..+.|+.++|+++|+++..+
T Consensus 514 qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2345555555555555554432 234555555555566666666555544
No 19
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=219.08 Aligned_cols=352 Identities=14% Similarity=0.093 Sum_probs=294.4
Q ss_pred ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845 5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
++.|+.......+|.+++++.+|.+|+++|+.++...|.-+ ..++.++|..+.+.|+|+.|+..|+.+++..|+..
T Consensus 231 kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~ 310 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI 310 (840)
T ss_pred cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH
Confidence 46788888889999999999999999999999998764333 45677888999999999999999999999888655
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcc--------------CCCcH--------------------------------
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKF--------------CGGNE-------------------------------- 114 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------~p~~~-------------------------------- 114 (476)
. -+++..|++..|+-++-.+.|.+++.+ +|++.
T Consensus 311 a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki 389 (840)
T KOG2003|consen 311 A-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI 389 (840)
T ss_pred h-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4 446777888888888888888888764 11110
Q ss_pred ------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------
Q 011845 115 ------------------------------YIYQTLALLEAKANRYEQARNLFRQATKC--------------------- 143 (476)
Q Consensus 115 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------------- 143 (476)
+.-...+.-+.+.|+++.|+++++-.-+.
T Consensus 390 iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg 469 (840)
T KOG2003|consen 390 IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG 469 (840)
T ss_pred hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc
Confidence 00112344567788888887776544333
Q ss_pred ----------------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 144 ----------------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 144 ----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
+.-++.+..+.|.+-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 2233334445555566678999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845 208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287 (476)
Q Consensus 208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 287 (476)
...+--++..+++.++.+|....+..+|++++.++..+-|++|.++..+|.+|-+.|+..+|..++-......|.+...
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~- 628 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET- 628 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH-
Confidence 9888888999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845 288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW 360 (476)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (476)
...+|..|....-.++|+.+|+++--+.|+.......++.|+.+.|+|.+|.++|.......|+-...+-.
T Consensus 629 --iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 629 --IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 44559999999999999999999999999999999999999999999999999999999988876655444
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.2e-27 Score=241.43 Aligned_cols=344 Identities=13% Similarity=0.052 Sum_probs=300.8
Q ss_pred ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHHcCC---------------------
Q 011845 5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE--NPYIWQCWAVLENKLGN--------------------- 61 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~--------------------- 61 (476)
+..|.+.+.+..++....+.|++++|...|+++....... +..+...++.+|...+.
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 3458999999999999999999999999999998742111 23344477777766544
Q ss_pred ----H---HHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 62 ----I---GKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 62 ----~---~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
+ ..+...+.+++...|. ++.+|+.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence 2 2234444555666677 89999999999987 899999999999999999754 46677888889999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
|+..|+++....|. ...+..+|.++...|++++|+.+|+++++..|.....+..++......|++++|+..++++++.+
T Consensus 528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999998877555 45678899999999999999999999999999988877777777778899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
|+ +.++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++..|+++. ++.+
T Consensus 607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~---a~~n 682 (987)
T PRK09782 607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA---LIRQ 682 (987)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHH
Confidence 96 9999999999999999999999999999999999999999999999999999999999999999999954 5788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV 355 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 355 (476)
+|.++...|++++|+.+|+++++++|++..+....+.+.....+++.|.+.+.+.....+...
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 899999999999999999999999999999999999999999999999999998887665444
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=2.4e-27 Score=223.81 Aligned_cols=299 Identities=17% Similarity=0.034 Sum_probs=250.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTL 120 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l 120 (476)
.....+..|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345566678888899999999999999999999999999999999999999999999999988754322 2567888
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHc
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-----FAWHVWGIFEANM 195 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~ 195 (476)
|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..+++++...|.+. ..+..++.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998888888999999999999999999999999988877652 3456788888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 011845 196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.+ ..++..++.++...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999888899999999999999999999999999888765 3567788999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHH
Q 011845 275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED--QGNSVRAEEIRNLY 347 (476)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 347 (476)
++++..|+... +..++.++...|++++|...++++++..|++......+...... .|+..++..+++..
T Consensus 274 ~~~~~~p~~~~----~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 274 RALEEYPGADL----LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHhCCCchH----HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99998887632 35678999999999999999999999999887655444443322 45777777766654
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-28 Score=225.14 Aligned_cols=302 Identities=16% Similarity=0.118 Sum_probs=211.6
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 48 IWQCWAVLEN--KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 48 ~~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
++..+|..+. .+-+..+|+..|.+.....++...++..+|..|+.+++|++|.++|+.+-+..|-.....-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3344444443 33355677777777555556656666677777777777777777777777777755554444555555
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL 205 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 205 (476)
.+.+--+---+.+..+..+|+.|+.|..+|.+|..+++.+.|+++|+++++++|....+|..+|.-+....+++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 55554444455566667777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+|.++.+.|+.++|+.+|++|+.++|.++.
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777754
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
. .+..|.++...+++++|...+++.-++-|++..+++.+|.+|.+.|+.+.|...|.-+....|
T Consensus 559 ~---~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 C---KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred h---HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 3 456677777777777777777777777777777777777777777777666665554444333
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=2.3e-27 Score=223.96 Aligned_cols=300 Identities=15% Similarity=0.092 Sum_probs=264.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHG 85 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~ 85 (476)
.....+.+|..+...|++++|+..|+++++.+ |.++.++..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 34556778999999999999999999999987 8889999999999999999999999999998754322 356789
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHH
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA-----SWIAWSQMEMQ 160 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~~ 160 (476)
+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+.. .+..+|.++..
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998876532 56678999999
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVLLQSLALLEYKYSTANLARKLF 239 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 239 (476)
.|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|.+ ..++..++.++...|++++|+..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876 456788999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHh
Q 011845 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ---RVGNLSAARRLFRSSLN 315 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~ 315 (476)
+++++..|+.. .+..++.++...|++++|+..++++++..|++.... .+...+. ..|+.++++..+++.++
T Consensus 273 ~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~----~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 273 RRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH----RLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH----HHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999875 448899999999999999999999999999875432 2222222 25688898888887765
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-26 Score=202.78 Aligned_cols=362 Identities=14% Similarity=0.072 Sum_probs=243.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc--CcHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK--GHIAAWHGW 86 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l 86 (476)
.|+..++..|.++...|....|+..|..++... |-.-.+|..++.+... ++........-| .+.-.-+.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence 345666777777777777777777777777666 6666666666555422 122222222222 222222345
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKF-CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL 165 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 165 (476)
+.++....+.++++.-++..... .|.+..+-...|.+.....++++|+..|+...+.+|-..+-.-.+..+++-.++-.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 66666666777777777777766 67777777778888888888888888888888887766555555555555554444
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845 166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI 245 (476)
Q Consensus 166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 245 (476)
+-.-+.+.+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|+++
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 44444444555555555566666777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845 246 DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM 325 (476)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 325 (476)
+|.+..+|+.+|+.|.-++...=|+-+|+++.+..|.++. +|..+|.||.+.++.++|+++|++++.....+..++.
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 7777777777777777777777777777777777777743 4556677777777777777777777777777777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhh-------hhh---cchhhhhhhhcccchHHHHHHHHHhcc
Q 011845 326 TWAQLEEDQGNSVRAEEIRNLYFQQR-------TEV---VDDASWVMGFMDIIDPALDRIKQLLNL 381 (476)
Q Consensus 326 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~ 381 (476)
.+|.++.+.++.++|...|+++++.. ++. ..-++.-+...+++++|-.+...++.-
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 77777777777777777777777632 111 122444555666777776666665544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=4.7e-26 Score=225.40 Aligned_cols=384 Identities=9% Similarity=-0.046 Sum_probs=302.3
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
.-..|+.+...+..+.+.+++|+++.|+..|+++++.. |.++.....++.++...|+.++|+.++++++...|......
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 34578888888999999999999999999999998887 66643333777888888999999999999884444445555
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..+|.++...|++++|+++|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++...++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence 5567788888999999999999999999998888888888888999999999999988888875444 555666666777
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH----------------------------------------
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK---------------------------------------- 203 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---------------------------------------- 203 (476)
..+|+..++++++.+|++..++..+..++...|-...|.+
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 7779999999998888887776665555544443322222
Q ss_pred --------HHHHHHh---cCCC---------------------------------------CHHHHHHHHHHHHHcCCHH
Q 011845 204 --------LLKIGHA---VNPR---------------------------------------DPVLLQSLALLEYKYSTAN 233 (476)
Q Consensus 204 --------~~~~~~~---~~~~---------------------------------------~~~~~~~la~~~~~~~~~~ 233 (476)
.++..+. ..|. -+.+....|..|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 2222222 1121 1225566788899999999
Q ss_pred HHHHHHHHHhccCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC------------CChhHHHHHHHHHH
Q 011845 234 LARKLFRRASEIDP------RHQPVWIAWGWMEWKEGNLDTARELYERALSIDS------------TTESAARCLQAWGV 295 (476)
Q Consensus 234 ~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------------~~~~~~~~~~~l~~ 295 (476)
+|+.+|.+++...| .+......|..++...+++++|..++++..+..| .++........++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999987653 2333356788889999999999999999988555 23333456667799
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHH
Q 011845 296 LEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPAL 372 (476)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~ 372 (476)
++...|++.+|.+.+++.+...|.|..++..+|.++...|.+.+|...++.+....|. +....+.++..+|++.+|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999888776664 3457788889999999999
Q ss_pred HHHHHHhccccCCCCCC
Q 011845 373 DRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 373 ~~~~~al~~~p~~~~~~ 389 (476)
...+.+++..|+++...
T Consensus 505 ~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 505 LLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHhhCCCchhHH
Confidence 99999999999998665
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.96 E-value=1.2e-25 Score=204.24 Aligned_cols=340 Identities=21% Similarity=0.273 Sum_probs=266.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
...|..-++.+...+-++-|+.+|..+++.. |.+..+|...+..-...|..++-..+|++++...|.....|...+..+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 3456677777777777888888888888777 777777877777777778888888888888887787777788888888
Q ss_pred HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH
Q 011845 91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL 170 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 170 (476)
...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....| ...+|+..+.+...+++.++|+.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHH
Confidence 7888888888888888888888878888777777778888888888888777655 356777777777777888888888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845 171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250 (476)
Q Consensus 171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 250 (476)
++++++..|.....|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|+..+|..+++++.-.+|.+.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---------------------------HHHHHHHHHHHHHhCCH
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---------------------------ARCLQAWGVLEQRVGNL 303 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------------------------~~~~~~l~~~~~~~g~~ 303 (476)
..|.....+-.+.|+.+.|.....++++..|++... ..++...|..+....++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 888877777788888888888888887777765432 34566777888888888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 304 SAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 304 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
++|.++|.++++.+|++.++|..+..++.+.|.-++-.+++.++....|
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 8888888888888888888888888888888887777777777665444
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.96 E-value=2.3e-25 Score=209.91 Aligned_cols=367 Identities=14% Similarity=0.093 Sum_probs=305.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
...++..|+.++..|++++|..++..+++.. |.++.+|+.+|.+|.+.|+.+++...+-.+--++|.+.+.|..++...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4567778888999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHhccHH
Q 011845 91 LRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-----CASWIAWSQMEMQQENNL 165 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~ 165 (476)
.++|++.+|.-+|.++++.+|.+.......+.+|.++|+...|...|.+++...|.. .......+..+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999832 123345577788888889
Q ss_pred HHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------------------C
Q 011845 166 AARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV--NPR--------------------------D 215 (476)
Q Consensus 166 ~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------------~ 215 (476)
.|++.++.++.... ...+.+..++.++.....++.|.......... .++ +
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999999998332 23455678889999999999998888766541 000 1
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845 216 PVL-LQSLALLEYKYSTANLARKLFRRASEIDP-RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293 (476)
Q Consensus 216 ~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 293 (476)
..+ ...++.+..+.++..+++..+..--...| +.+..+..++.++...|++.+|+.+|..+....+... ..+|..+
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~ 455 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKL 455 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHH
Confidence 112 55566666666666666666554433334 4568899999999999999999999999998876665 3478899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh------------hhcchhhhh
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT------------EVVDDASWV 361 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~~~~ 361 (476)
|.||..+|.+++|+++|++++...|++.++...|+.++.++|++++|.+.++.....++ .+......+
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888554321 233456678
Q ss_pred hhhcccchHHHHHHHHHhc
Q 011845 362 MGFMDIIDPALDRIKQLLN 380 (476)
Q Consensus 362 ~~~~g~~~~A~~~~~~al~ 380 (476)
+...|+.++-+.....++.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8889988886665544443
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-25 Score=194.55 Aligned_cols=336 Identities=15% Similarity=0.103 Sum_probs=244.0
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CcCcH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCWAVLENKLGNIGKARELFDASTVA-DKGHI 80 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 80 (476)
+...|-+..+|..|+.+... .+ .....+... | .+.-.-..++.++....+.++++.-++..... .|.+.
T Consensus 191 v~~~P~~W~AWleL~~lit~---~e----~~~~l~~~l-~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~ 262 (559)
T KOG1155|consen 191 VNRYPWFWSAWLELSELITD---IE----ILSILVVGL-PSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM 262 (559)
T ss_pred HhcCCcchHHHHHHHHhhch---HH----HHHHHHhcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH
Confidence 34457777788777766432 22 222222222 2 22333345666777777788888888777766 66676
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
-.-...|.+...+.++++|+..|+.+.+.+|-...-.-.+..++.-.++-.+-.-+.+.+..++.--++....+|..|..
T Consensus 263 ~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSl 342 (559)
T KOG1155|consen 263 YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSL 342 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHH
Confidence 66677788888888888888888888888876555555555555555554444455566666666667777777888888
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
.++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+++++++|.+..+|+.+|+.|.-++.+.=|+-+|+
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----
Q 011845 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN----- 315 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----- 315 (476)
+++...|+++..|..+|.+|.+.++.++|+.+|.+++.....+.. .+..+|.+|.+.++.++|..+|++.++
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~---~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS---ALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888877665533 467778888888888888888888777
Q ss_pred --hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 316 --INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 316 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
..|+...+...|+..+.+.+++++|......+..-
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 34555566777888888888888887766655543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.96 E-value=8.6e-25 Score=198.67 Aligned_cols=380 Identities=18% Similarity=0.259 Sum_probs=274.3
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh---------
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAST--------- 73 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------- 73 (476)
+++.-|.+.+.|..+++. .-|+.|..++.++-+.- |.++.+|..-+.+-...|+.+....+..+.+
T Consensus 402 Aveccp~s~dLwlAlarL----etYenAkkvLNkaRe~i-ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 402 AVECCPQSMDLWLALARL----ETYENAKKVLNKAREII-PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred HHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 445556666666655543 34666666666665555 6666666666666666666555444444432
Q ss_pred ------------------------------hc---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845 74 ------------------------------VA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120 (476)
Q Consensus 74 ------------------------------~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (476)
.. ..+....|..-+..+.+.+-++-|+.+|..+++.+|....+|...
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra 556 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA 556 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH
Confidence 11 122346677777777777777777777777777777777777777
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (476)
+..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+.-..+.....+++.
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 280 (476)
|..+|.++....| ...+|+..+.+...+++.++|+.+++++++..|+....|..+|.++.++++.+.|...|...++..
T Consensus 637 aR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 637 ARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 7777777776655 456777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh--------
Q 011845 281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT-------- 352 (476)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 352 (476)
|..... |..++.+-.+.|+.-.|..+++++.-.+|.+...|....++..+.|+.+.|..++.++++..|
T Consensus 716 P~~ipL---WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 716 PNSIPL---WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred CCCchH---HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 777544 455577777777777777777777777777777777777777777777777777777776333
Q ss_pred -------------------------hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845 353 -------------------------EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA 391 (476)
Q Consensus 353 -------------------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 391 (476)
.+....+..+....++++|.++|.++++++|++++++.-
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 233345556666778999999999999999999998743
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=2.7e-25 Score=187.15 Aligned_cols=317 Identities=13% Similarity=0.059 Sum_probs=250.0
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW 86 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 86 (476)
+|.+++-++.+|..++..|++.+|+..|..+++.+ |++..+++..|.+|..+|+..-|+.-+.+++++.|+...+....
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45667778888888888888888888888888887 88888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcH---HHH------------HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNE---YIY------------QTLALLEAKANRYEQARNLFRQATKCNPKSCASW 151 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 151 (476)
|.+++++|.+++|..-|+.+++.+|.+. ++. ......+...|+...|+......+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 8888888888888888888888887542 222 2223344456788888888888888888888888
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH---------
Q 011845 152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL--------- 222 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------- 222 (476)
...+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888875543221
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHhccCCCCHHH----HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845 223 ---ALLEYKYSTANLARKLFRRASEIDPRHQPV----WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGV 295 (476)
Q Consensus 223 ---a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~ 295 (476)
+.-....++|.++++..++.++.+|..+.+ +..+..|+...|++.+|+..+.+++..+|++. .++...+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv---~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV---QVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH---HHHHHHHH
Confidence 233445677788888888888888874433 33466677777888888888888888888874 34777788
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845 296 LEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327 (476)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 327 (476)
+|.-...|+.|+.-|+++.+.++++..+...+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 88888888888888888888888877665443
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-25 Score=197.23 Aligned_cols=340 Identities=15% Similarity=0.080 Sum_probs=287.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHh-
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK-----------------LGNIGKARELFDAST- 73 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-----------------~g~~~~A~~~~~~~~- 73 (476)
..++..|.+|....++++|...|.+++..+ ....+....+....+- .+...+-++.+-++.
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D-~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLAD-AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKL 220 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhh
Confidence 456778999999999999999999999876 5554444433322211 111111112111111
Q ss_pred ---------hcC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845 74 ---------VAD--------KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL 136 (476)
Q Consensus 74 ---------~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 136 (476)
... .++++.....+..++..+++.+..++.+..++.+|-+..++.....++...|+..+-..+
T Consensus 221 ~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~l 300 (611)
T KOG1173|consen 221 CKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLL 300 (611)
T ss_pred hhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHH
Confidence 111 234677778899999999999999999999999999888776655699999999998888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 011845 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP 216 (476)
Q Consensus 137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 216 (476)
-.+.+...|+.+..|+..|..|...|++.+|.++|.++..++|....+|..+|..+...|+.++|+.+|..|-+..|...
T Consensus 301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 301 SHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHH
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQA 292 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~ 292 (476)
.....+|.-|...++++-|..+|.+++.+.|.+|.++..+|.+.+..+.|.+|..+|+.++.. .+......-++.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999843 3333223346789
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
+|.++.+++.+++|+.+|++++.+.|.+..++..+|.++..+|+++.|++.|.+++-..|
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999988877766544
No 32
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-23 Score=187.02 Aligned_cols=448 Identities=15% Similarity=0.064 Sum_probs=291.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..++.--..+...|+|++|++...+++... |++..++.....++.+.++|++|+.+.+.-......+ ...+..+.|++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 345555567778899999999999999888 8899999999999999999999996555433221111 22368899999
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------------------------
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK------------------------- 146 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------------------------- 146 (476)
+++..++|+..++ ..++.+..+....|.+++++|+|++|..+|+..++.+.+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 9999999999998 345556678888899999999999999999988655322
Q ss_pred ------chhHHHHHHHHHHHhccHHHHHHHHHHHHHcC--------CC--c-----HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 147 ------SCASWIAWSQMEMQQENNLAARQLFERAVQAS--------PK--N-----RFAWHVWGIFEANMGFIDKGKKLL 205 (476)
Q Consensus 147 ------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~--~-----~~~~~~l~~~~~~~~~~~~A~~~~ 205 (476)
+.+.+++.+.++...|+|.+|++.+++++.+. .+ . ..+...++.++..+|+.++|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 23457788889999999999999999995431 11 1 245678899999999999999999
Q ss_pred HHHHhcCCCCHHH-------------------------------------------------HHHHHHHHHHcCCHHHHH
Q 011845 206 KIGHAVNPRDPVL-------------------------------------------------LQSLALLEYKYSTANLAR 236 (476)
Q Consensus 206 ~~~~~~~~~~~~~-------------------------------------------------~~~la~~~~~~~~~~~A~ 236 (476)
...+..+|.+... +.+.+.+.+..+..+.+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9998877655321 112222222223333333
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Q 011845 237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL-- 314 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-- 314 (476)
+.....-...|....--........+...+.+|.+++....+..|.+... +...++.+....|+++.|++.+...+
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~--v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV--VLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 33333222333322222223333333347888999999998888887433 45667889999999999999998333
Q ss_pred ------hhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh----------hcchhhhhhhhcccchHHHHHHHHH
Q 011845 315 ------NINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE----------VVDDASWVMGFMDIIDPALDRIKQL 378 (476)
Q Consensus 315 ------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~A~~~~~~a 378 (476)
+. -..+.+-..+..++.+.++.+.|..++..++.-+.. .+...+..-...|+-++|...+++.
T Consensus 406 ~~ss~~~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 406 WKSSILEA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 22 223445566677788888888888888888763331 1122333444459999999999999
Q ss_pred hccccCCCCCCCCC------------------CCCCCCCC--ch---hhhcCcCCCCc----cCCcccccCCCChhHHH-
Q 011845 379 LNLEKSSYKEPSAY------------------SPGDNEST--DD---EASVSRYSGLY----VGNDLESASGFDLDDFI- 430 (476)
Q Consensus 379 l~~~p~~~~~~~~~------------------~~~~~~~~--~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~- 430 (476)
++.+|++....... +....... +. +.+.+...+.. ...........++.--.
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p~~~l~~vdVd~LE~s~ga~~~~~~k~ta~S~~~~~~~~~~kKKk~ 564 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARLDPEKAESLSKKLPPLKGLKAVDVDALEKSDGAKYSEAYKKTAVSQVEEKKSKELKKKKK 564 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcCCCcccchhcCchHhhhccCcchhhhhccccccchhhccchhhhhhcc
Confidence 99999876654211 00000000 00 00000000000 00000001111111111
Q ss_pred hhhcCCCccccchhccccCCCcccccccCccccccCCCcch
Q 011845 431 RNKLNLDPDQLDVLLEKTSNPSVVRKVNYPRRRIFRPEDKT 471 (476)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (476)
+.+.+.+|.+ +.+...|+|+||+|.++|+.|||++|.
T Consensus 565 rKrkgk~pkn----yn~~~tPDPERWLP~reRS~yr~KrK~ 601 (652)
T KOG2376|consen 565 RKRKGKLPKN----YNPKVTPDPERWLPRRERSTYRPKRKG 601 (652)
T ss_pred cccccCCccc----CCCCCCCChhhcccchhccccCccccc
Confidence 3455666665 446678999999999999999999994
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=2.4e-23 Score=206.30 Aligned_cols=349 Identities=12% Similarity=-0.022 Sum_probs=281.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++++.+|+++.....++.++...|+.++|+.++++++... +........+|.++...|++++|+++|+++++.+|+++.
T Consensus 59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 4678899986554488888888999999999999998322 344445555588999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
++..++..+...++.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++..++..+..++...
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999986554 66677776678887799999999999999887766555544443
Q ss_pred ccHH------------------------------------------------HHHHHHHHHHH---cCCC----------
Q 011845 162 ENNL------------------------------------------------AARQLFERAVQ---ASPK---------- 180 (476)
Q Consensus 162 ~~~~------------------------------------------------~A~~~~~~a~~---~~~~---------- 180 (476)
|-.. .|+..++..+. ..|.
T Consensus 217 ~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~ 296 (822)
T PRK14574 217 RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARI 296 (822)
T ss_pred CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHH
Confidence 3221 22333333333 1121
Q ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHH
Q 011845 181 -----------------------------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP------RDPVLLQSLALL 225 (476)
Q Consensus 181 -----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~ 225 (476)
...+....|..|...++.++|+.+|.+++...| .+......|...
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 112344677888899999999999999987653 233345778889
Q ss_pred HHHcCCHHHHHHHHHHHhccCC---------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845 226 EYKYSTANLARKLFRRASEIDP---------------RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290 (476)
Q Consensus 226 ~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 290 (476)
+...+++++|..++++..+..| +.......++.++...|++.+|.+.+++.+...|.+.. ++
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~---l~ 453 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN---LR 453 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Confidence 9999999999999999987544 23356777899999999999999999999999999965 46
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV 355 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 355 (476)
..+|.++...|.+.+|...++.+..++|++..+...++.+...+|++.+|..+.+.+....|+-.
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 77899999999999999999999999999999999999999999999999999999988877654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=5.1e-27 Score=210.02 Aligned_cols=270 Identities=21% Similarity=0.294 Sum_probs=102.2
Q ss_pred ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
+..|. ...+.+|.+++..|++++|++++.+.+... +|.++..|..+|.+....++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455 233466788888888888888886655444 467777888888888888888888888888887777777777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHh
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~ 161 (476)
..++.+ ...+++++|+.+++++.+.. .++..+...+.++...++++++...++++.... +.++..|..+|.++.+.
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred cccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 777777 67788888888877777655 345566667777777788888888877766544 55667777788888888
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
|++++|+..|+++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++...|++++|+.+|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 88888888888888888888777777787777778888777777777777777777777778888888888888888888
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
+++..|+++.++..+|.++...|+.++|..++++++.
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 8877888877778888888888888888777777654
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=1.8e-22 Score=205.50 Aligned_cols=338 Identities=12% Similarity=0.037 Sum_probs=254.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWAV 88 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 88 (476)
+...|..+...+...|++++|..+|+++.+.....+...|..+...|.+.|+.++|..+|+++..... .+...|..+..
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44566777777888888888888888887776566778888888888888888888888888876543 25677888888
Q ss_pred HHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHhcc
Q 011845 89 LELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQARNLFRQATKC----NPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~ 163 (476)
.|.+.|++++|+.+|.++.... ..+..+|..+...|.+.|++++|.++|.++... .| +..+|..+...|.+.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCC
Confidence 8888888888888888876543 235677888888888888888888888888652 23 35677778888888888
Q ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 164 NLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-PRDPVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
+++|.++|+.+.+.. +.+...|..+...|.+.|++++|..+|.++.... ..+...+..+...+.+.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888887765 4466778888888888888888888888887652 22466777888888888888888888888
Q ss_pred HhccC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CC
Q 011845 242 ASEID-PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQ 319 (476)
Q Consensus 242 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 319 (476)
+.+.. +.+...+..+...|.+.|++++|..+|+++........ ...|..+...|.+.|++++|.++|+++.... ..
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 87653 33567788888888888888888888888765422211 2346677888888888888888888876542 23
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
+..++..+...+.+.|++++|..++..+.+.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4556777778888888888888888887764
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=3.3e-24 Score=180.65 Aligned_cols=310 Identities=14% Similarity=0.039 Sum_probs=277.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
|.+..-.+.+|.-++..|++..|+..|..+++.+|++..+++..|.+|+..|+-.-|+.-+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchh---HH------------HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCA---SW------------IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHV 187 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 187 (476)
++.++|++++|..-|+.+++.+|++.. +. ......+...|+...|+......+++.|-+...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999999999999985532 22 222334556789999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH------------
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA------------ 255 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------ 255 (476)
.+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987543321
Q ss_pred HHHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845 256 WGWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ 334 (476)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 334 (476)
-+......++|.++++..++.++.+|..... ...+..+..|+...|++.+|+..+.+++..+|++..++...+..|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1334556789999999999999999984332 334455688999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhh
Q 011845 335 GNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 335 g~~~~A~~~~~~~~~~~~ 352 (476)
..|+.|+.-|+.+.+..+
T Consensus 355 E~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 999999999999987444
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.3e-24 Score=188.98 Aligned_cols=374 Identities=13% Similarity=0.093 Sum_probs=259.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
....|...+..|+|+.|+.+|..++..+ |.+...+.+...+|...|+|++|++--.+.++++|..+..|..+|..+.-.
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 4567889999999999999999999999 668889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc------------------------HHHHHHHHHHHHhcCCCchh
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR------------------------YEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~~~~ 149 (476)
|+|++|+..|.+.++.+|++..+...++.++...-. .+.+.....+.+..+|.+..
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999999888888722200 01111111222222222211
Q ss_pred HHHHHHHHHHHhccHHHHH--HHHHHHHH-----cCCC------------c---------HHHHHHHHHHHHHcCCHHHH
Q 011845 150 SWIAWSQMEMQQENNLAAR--QLFERAVQ-----ASPK------------N---------RFAWHVWGIFEANMGFIDKG 201 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~--~~~~~a~~-----~~~~------------~---------~~~~~~l~~~~~~~~~~~~A 201 (476)
.+..--.+....|..-..- ..+..... ..|. . ......+|.......++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 1110000000000000000 00000000 0010 0 11234566666666666667
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCChhHHHHHHH
Q 011845 202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-------PVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++...... .....+|..+...++++.|+.+|+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 77777766666 5666666666666666666666666666655443221 122234455556666666666666
Q ss_pred HHHccCCCCh-----------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 275 RALSIDSTTE-----------------------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 275 ~a~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
+++....... ....-...-|..++..|+|..|+..|.+++..+|+++..+.+.+.||
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 6665432210 01222334488999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 332 EDQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 332 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
.++|.+..|+.-.+.+++..|.. +...|.++..+.+|++|++.|+++++++|++....
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999877754 45678899999999999999999999999876654
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-24 Score=191.81 Aligned_cols=285 Identities=18% Similarity=0.194 Sum_probs=260.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
.++++....+..++..+++.+..++++..++.+|-+...+.....++...|+..+-..+-.+++...|+.+..|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 46778888899999999999999999999999999888777655599999999888888889999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 203 (476)
|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|.+.++++-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----C---CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID----P---RHQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
.|.+++.+.|.+|.++..+|.+.+..+.+.+|..+|+.++..- + .-...+.++|.++.+.+.+++|+..|+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998432 2 23356899999999999999999999999
Q ss_pred HccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 277 LSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
+.+.|.+.. .+..+|.+|..+|+++.|+++|.++|.+.|++..+--.|+.+.
T Consensus 482 L~l~~k~~~---~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 482 LLLSPKDAS---THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHcCCCchh---HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999954 5778899999999999999999999999999987666555443
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=3.3e-22 Score=203.61 Aligned_cols=334 Identities=13% Similarity=0.026 Sum_probs=251.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC-CcHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG-GNEYIYQTLAL 122 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 122 (476)
+...|..+...+.+.|++++|..+|+++.+... .+...|..+...|.+.|+.++|.++|+++.+... .+..+|..+..
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566666777778888888888888776543 3566777888888888888888888888876542 36778888888
Q ss_pred HHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCC
Q 011845 123 LEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQA----SPKNRFAWHVWGIFEANMGF 197 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~ 197 (476)
.|.+.|++++|+.+|.++.... ..+..+|..+...+.+.|++++|..+|.++... .| +...|..+...|.+.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCC
Confidence 8888888888888888886654 234667888888888888888888888887652 33 35677788888888888
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845 198 IDKGKKLLKIGHAVN-PRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 198 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
+++|.++|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.+. .|+ ...|..+...+.+.|++++|.++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888887765 456778888888888888888888888888765 343 5677888888888888888888888
Q ss_pred HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhh--
Q 011845 275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQR-- 351 (476)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 351 (476)
.+.+...... ...+..+...|.+.|++++|.++|+++.... ..+..+|..+...|.+.|++++|.++++.+....
T Consensus 674 eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 674 DARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 8887643222 2356777888888888888888888876542 2345678888888888888888888888876532
Q ss_pred h--hhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845 352 T--EVVDDASWVMGFMDIIDPALDRIKQLLNLE 382 (476)
Q Consensus 352 ~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 382 (476)
| ..+..+...+...|++++|..++.++++..
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2 223455567788888999999888887753
No 40
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9e-24 Score=182.23 Aligned_cols=379 Identities=13% Similarity=0.044 Sum_probs=319.8
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV----------- 74 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------- 74 (476)
..|.+.+.....+.+|...++-+.|+....++.... ..+.+...++..+..-++..++.-.+...+.
T Consensus 92 ~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~--r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 92 PEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL--RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred CCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc--cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 356778888899999999999999999988875432 4566666667666665554444444433321
Q ss_pred --------------------cCcCcHHHHH---HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 75 --------------------ADKGHIAAWH---GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 75 --------------------~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
..|..+..|. .++.++.-...+..+..++-.-....|++...+..+|.++...|+++
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 2233333222 34555555555556666777777888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
+|+..|+++..++|......-.+|.++...|+++.-..+....+........-|+--+..++..+++..|+.+-++++..
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999888778888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHH
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ 291 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 291 (476)
+|.+..++...|.++...++.++|+-.|+.+..+.|..-..|..+..+|...|.+.+|...-+.++...|.+... +.
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~---Lt 406 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS---LT 406 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh---hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888544 44
Q ss_pred HHH--HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh--cchhhhhhhhccc
Q 011845 292 AWG--VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV--VDDASWVMGFMDI 367 (476)
Q Consensus 292 ~l~--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 367 (476)
.+| .++..-.--++|.+++++++.++|....+...++.++...|.+++++.++++++...++. +..+|.++...+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 444 233444456899999999999999999999999999999999999999999999877754 4789999999999
Q ss_pred chHHHHHHHHHhccccCCCCCC
Q 011845 368 IDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 368 ~~~A~~~~~~al~~~p~~~~~~ 389 (476)
+++|++.|..++.++|++..+.
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHHHhcCccchHHH
Confidence 9999999999999999976654
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2e-23 Score=210.38 Aligned_cols=356 Identities=12% Similarity=0.025 Sum_probs=161.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC------------
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG------------ 78 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------------ 78 (476)
..++..+...|.+.|++++|.++|+++. ..+...|..+...+.+.|++++|+.+|+++....+.
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3444555555555555555555555542 123444555555555555555555555555432110
Q ss_pred ------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845 79 ------------------------HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134 (476)
Q Consensus 79 ------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 134 (476)
+..++..+...|.+.|++++|.++|+++. +.+..+|..+...|.+.|++++|+
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHH
Confidence 11112233444444444444444444432 123344444444444444444444
Q ss_pred HHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 135 NLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 135 ~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
.+|+++.+.. ..+..++..+...+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|..+|+++.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 4444443322 1123344444444444444444444444444433 22334444444555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845 213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290 (476)
Q Consensus 213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 290 (476)
.+...|..+...|.+.|+.++|+++|+++.+. .|+ ...+..+...+...|..++|..+|+.+.+..+-.+. ...|
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y 465 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHY 465 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccch
Confidence 13344445555555555555555555544432 122 234444444444555555555555544432111111 1123
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhccc
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDI 367 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~ 367 (476)
..+..++.+.|++++|.+.++++- ..| +..+|..+...+...|+.+.|..+++..++..|. .+..+..+|...|+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 344455555555555555554421 122 2334555555555555555555555555444432 22344445555555
Q ss_pred chHHHHHHHHHhc
Q 011845 368 IDPALDRIKQLLN 380 (476)
Q Consensus 368 ~~~A~~~~~~al~ 380 (476)
+++|.+.++.+.+
T Consensus 544 ~~~A~~v~~~m~~ 556 (697)
T PLN03081 544 QAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 42
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-23 Score=179.48 Aligned_cols=330 Identities=14% Similarity=0.082 Sum_probs=290.2
Q ss_pred cccccCCCCchhHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC
Q 011845 2 KCIDYWPEDGRPYVA---LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG 78 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 78 (476)
.++...|.++..|.. ++.++....-+..+..++-.-.... ++|...+..+|.+++..|++.+|+..|+++...+|.
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~l-r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTL-RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccC-CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 345666766655443 3444443344444455555555555 899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME 158 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 158 (476)
.....-.+|.++...|+++.-..+....+........-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 99999999999999999999999999999888777888888899999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH-cCCHHHHH
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA-LLEYK-YSTANLAR 236 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~-~~~~~~A~ 236 (476)
...|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.+++..|.+..++..+| .++.. -.--++|.
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 44443 33457899
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
+++++++.+.|....+-..++.++...|.+..++.++++.+...|+.. ++..+|.++...+.+++|.++|..++.+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----LHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998864 4677899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC
Q 011845 317 NSQSYITWMTWAQLEEDQGN 336 (476)
Q Consensus 317 ~p~~~~~~~~l~~~~~~~g~ 336 (476)
+|++..+...+-.+..+..+
T Consensus 501 dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 501 DPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred CccchHHHHHHHHHHhccCC
Confidence 99999988887776655543
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=5.1e-26 Score=203.55 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=87.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKF--CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE 162 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 162 (476)
.+|.++...|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4566666666666666666444332 255566666666666666666666666666666666655555555555 4566
Q ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN--PRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
++++|+.+++++.+..+ ++..+...+.++...++++++...++++.... +.++.++..+|.++.+.|++++|+..|+
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655443 34445555566666666666666666655433 4556666667777777777777777777
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 320 (476)
++++.+|+++.++..+++++...|+++++...++......|+++.. +..+|.++..+|++++|+.+|++++..+|++
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL---WDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH---HHHHHHHhccccccccccccccccccccccc
Confidence 7777777776777777777766777776666666666655555443 3444777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845 321 YITWMTWAQLEEDQGNSVRAEEIRNLYF 348 (476)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 348 (476)
+.++..+|.++...|+.++|..++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 7777777777777777777776665554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.93 E-value=1.2e-22 Score=190.97 Aligned_cols=299 Identities=13% Similarity=0.072 Sum_probs=191.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhc
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE-YIYQTLALLEAKAN 128 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g 128 (476)
...|.+....|+++.|.+.+.++.+..|.....+...|.+...+|+++.|..++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 44566666677777777777777766666666666667777777777777777777776666654 35555677777777
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHHcCCHHHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH----VWGIFEANMGFIDKGKKL 204 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~ 204 (476)
+++.|...++++++..|+++.++..++.++...|++++|...+.+..+....++.... ....-+...+..+++...
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777777777777777777777777777777777777777665433322211 111111233333444455
Q ss_pred HHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 205 LKIGHAVNP----RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW--IAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 205 ~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
+.++....| +++.++..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 555555555 4667777777777777777777777777777777665421 2222222334666777777777777
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 279 IDSTTESAARCLQAWGVLEQRVGNLSAARRLFR--SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
..|+++. ..++..+|.++.+.|++++|.++|+ .+++..|++.. +..++.++.+.|+.++|.+++++.+..
T Consensus 328 ~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777752 1235556777777777777777777 46666666655 347777777777777777777766553
No 45
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=1.8e-22 Score=203.39 Aligned_cols=340 Identities=15% Similarity=0.133 Sum_probs=288.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-----------------------------------ChHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-----------------------------------NPYIWQCWAV 54 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~~la~ 54 (476)
+...|..+...|.+.|++++|+.+|+++.+..... +..++..+..
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 66789999999999999999999999987644222 3334566788
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHH
Q 011845 55 LENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQA 133 (476)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 133 (476)
.|.+.|++++|..+|+++. +.+..+|..+...|.+.|++++|+.+|+++.... ..+..++..+...+.+.|++++|
T Consensus 268 ~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 8999999999999999874 3577899999999999999999999999997653 34677899999999999999999
Q ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 134 RNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 134 ~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
.+++..+++.. +.+..++..+...|.+.|++++|..+|++..+ .+...|..++..|.+.|+.++|+++|+++....
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999886 56778899999999999999999999998754 356789999999999999999999999988753
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 213 -PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 213 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
..+..++..+...+...|..++|..+|+.+.+..+ .+...|..+..++.+.|++++|.+.++++. ..|+. .+
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~----~~ 496 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTV----NM 496 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCH----HH
Confidence 23577788899999999999999999999986432 234678899999999999999999998752 33332 35
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW 360 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (476)
|..+...+...|+++.|...+++++...|++...+..++.+|.+.|++++|.++++.+.+......+...|
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 77778899999999999999999999999999999999999999999999999999987765543333333
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=2.7e-22 Score=189.35 Aligned_cols=331 Identities=15% Similarity=0.076 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
..+...|...+..|++++|..++.+++..+|.++.+|+.+|.+|..+|+.+++....-.+-.++|.+.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45566677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHcCCHHHH
Q 011845 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-----FAWHVWGIFEANMGFIDKG 201 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~~~A 201 (476)
+|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... ......+..+...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999998331 2334557778888888999
Q ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCC--------------------------CHH
Q 011845 202 KKLLKIGHAVNP--RDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPR--------------------------HQP 251 (476)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~--------------------------~~~ 251 (476)
.+.++.++.... .....+..++.++.....++.|.......... .++ +..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 999999988332 33456778899999999999998877665541 000 112
Q ss_pred H-HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-cHHHHHHHHH
Q 011845 252 V-WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-SYITWMTWAQ 329 (476)
Q Consensus 252 ~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 329 (476)
+ ...++.+..+.++..+++..+..--...| ...+.++..++.++...|++.+|+.+|..+....+. +..+|+.+|.
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~--~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWV--SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCCh--hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 2 44555555566666666655543332223 334678999999999999999999999999877543 4579999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccchHHHHHHHHHh
Q 011845 330 LEEDQGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIIDPALDRIKQLL 379 (476)
Q Consensus 330 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~A~~~~~~al 379 (476)
||..+|.+++|++.|++++...|... -.++.++..+|+.++|.+.+.+..
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999888554 568889999999999999999888
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=186.21 Aligned_cols=374 Identities=13% Similarity=-0.006 Sum_probs=301.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-----HHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-----IAAWHG 85 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~ 85 (476)
.+++.++..|.....+.+|+..|+-+++.. .|+....-.++|.++++..+|.+|+.+|+-++..-|.- ..++.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 578899999999999999999999987532 26666777889999999999999999999999876642 456778
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------CCch---
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--------------PKSC--- 148 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------p~~~--- 148 (476)
+|..+.+.|+|+.|+..|+.+++..|+... -+++..+++..|+-++-.+.|.+++.+. |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 899999999999999999999999986554 4567788888999999999999887651 1110
Q ss_pred -----------------------------------------------------------hHHHHHHHHHHHhccHHHHHH
Q 011845 149 -----------------------------------------------------------ASWIAWSQMEMQQENNLAARQ 169 (476)
Q Consensus 149 -----------------------------------------------------------~~~~~la~~~~~~~~~~~A~~ 169 (476)
+.-...+.-+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 001122344667788888887
Q ss_pred HHHHHHHcC-------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 170 LFERAVQAS-------------------------------------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 170 ~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
+++-.-+.+ .-++.+..+.|.+.+..|++++|.+.|++++..+
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 775433322 2223333444555566788999999999999888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 213 PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 213 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|++++.++..+-|+++. ++..
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~---ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA---ILSK 597 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH---HHHH
Confidence 8888899999999999999999999998887777788899999999999999999999999999999999865 4778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc---chhhhhhhhcccch
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV---DDASWVMGFMDIID 369 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~ 369 (476)
+|.+|.+.|+..+|.+++-......|.+.++.-+|+..|....-+++|+.+++++.-..|... ...+.++...|+|+
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 899999999999999999888889999999989999999999999999999998876655433 34667888999999
Q ss_pred HHHHHHHHHhccccCCCCCC
Q 011845 370 PALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 370 ~A~~~~~~al~~~p~~~~~~ 389 (476)
+|.+.|+..-...|.+.+..
T Consensus 678 ka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHhCccchHHH
Confidence 99999999888888765543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.93 E-value=6.3e-22 Score=186.01 Aligned_cols=293 Identities=12% Similarity=0.044 Sum_probs=133.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHHHhCC
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLELRQGN 95 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~ 95 (476)
.|...+..|+++.|.+.+.++.+.. |.....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 3444444555555555555544433 33333344444555555555555555555544444442 233334555555555
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH----HHHHHHHHhccHHHHHHHH
Q 011845 96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI----AWSQMEMQQENNLAARQLF 171 (476)
Q Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~ 171 (476)
++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+++...+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555555555555555555555555555555555555555544322222111 1111112222333333344
Q ss_pred HHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845 172 ERAVQASP----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL--QSLALLEYKYSTANLARKLFRRASEI 245 (476)
Q Consensus 172 ~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~ 245 (476)
..+....| +++.++..++..+...|++++|...++++++..|++.... ..........++...+++.++++++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44444444 2444555555555555555555555555555555444321 11111122234444555555555555
Q ss_pred CCCCH--HHHHHHHHHHHHcCChhHHHHHHH--HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 246 DPRHQ--PVWIAWGWMEWKEGNLDTARELYE--RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 246 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
.|+++ .+...+|+++.+.|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.++|++++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~----~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND----LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555 444455555555555555555555 34444444322 1234555555555555555555543
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-21 Score=181.73 Aligned_cols=379 Identities=16% Similarity=0.130 Sum_probs=311.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--cCcHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--KGHIAAWHGW 86 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 86 (476)
+++.+|-.+...+...|+|+.+.+.|++++... -...+.|+.++.++...|.-..|+.+++..+... |.++..+...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 678888899999999999999999999998665 5667899999999999999999999999998877 7777666654
Q ss_pred HH-HHHHhCCHHHHHHHHHHhhccCC-----CcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhcCCCchh
Q 011845 87 AV-LELRQGNIKKARQLLAKGLKFCG-----GNEYIYQTLALLEAKA-----------NRYEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 87 a~-~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~ 149 (476)
+. |..+.+..++++.+..+++.... -.+..+..+|.+|..+ ....++++.++++++.+|+|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 44 55567899999999999988432 2355677777777543 3467899999999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQA-SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 228 (476)
+.+.++.-|...++.+.|....++++.. ..+++..|..++.++...+++.+|+.+...++...|+|.........+...
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 456789999999999999999999999999999888754443333333333
Q ss_pred cCCHHHHHHH-------------------------------------------HHHHhcc--------C-----C-----
Q 011845 229 YSTANLARKL-------------------------------------------FRRASEI--------D-----P----- 247 (476)
Q Consensus 229 ~~~~~~A~~~-------------------------------------------~~~~~~~--------~-----~----- 247 (476)
.++.++|+.. +..+... . |
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 3333333332 2222110 0 1
Q ss_pred ---CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 248 ---RH-----QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 248 ---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
+. ...|...+..+...++.++|..++.++-.+.|... ..++..|.++...|++.+|.+.|..++.++|+
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~---~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA---SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH---HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 11 14677788899999999999999999999998874 45777899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH--HHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845 320 SYITWMTWAQLEEDQGNSVRAEE--IRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA 391 (476)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 391 (476)
++.+...+|.++.+.|+..-|.. ++..+++.+| +.|..+|.++...|+.++|.++|..++++.+.+|..-..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 99999999999999999888877 8888888665 778999999999999999999999999999998875443
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.92 E-value=1.3e-21 Score=182.90 Aligned_cols=293 Identities=11% Similarity=0.099 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH-HHHHHHHHH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW-AVLENKLGNIGKARELFDASTVADKGHIAAW-HGWAVLELR 92 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~ 92 (476)
+..|...+..|+|++|.+...+..+.. +++.+++.+ +....+.|+++.|..+|.++.+.+|++..+. ...+.++..
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344555555666666666666553321 223333333 4444666666666666666666666554222 233666666
Q ss_pred hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH--------HHHHHHHHhccH
Q 011845 93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI--------AWSQMEMQQENN 164 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------~la~~~~~~~~~ 164 (476)
.|++++|...++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 666666666666666666666666666666666666666666666666665544332211 111111112222
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
+.....++..-...|+++.+...++..+...|+.++|...++++++. +.++.....++.+ ..++++++++.+++.++
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence 33333333333334556666666666666666666666666666663 3344433333333 23666666666666666
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 245 IDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
..|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..+|++++.+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~----~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD----YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666532 234566666666666666666666553
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.92 E-value=6.6e-22 Score=204.14 Aligned_cols=355 Identities=14% Similarity=0.065 Sum_probs=171.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--cCcHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--KGHIAAWHGWA 87 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la 87 (476)
+..++..+...|.+.|++++|.++|+++. ..+...|..+...|.+.|++++|+.+|+++.... |+ ...+..+.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll 396 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVL 396 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHH
Confidence 34445555555555555555555555542 2234445555555555555555555555543321 22 22333333
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHH
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCG-GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA 166 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 166 (476)
..+...|+++.|.+++..+.+... .+..++..+...|.+.|++++|.++|+++.+ .+...|..+...|...|+.++
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHH
Confidence 344445555555555554444321 2334455555666666666666666655432 234455556666666666666
Q ss_pred HHHHHHHHHHcCCCcHHHHH-----------------------------------HHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 167 ARQLFERAVQASPKNRFAWH-----------------------------------VWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 167 A~~~~~~a~~~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
|+..|+++....+.+...+. .+...|.+.|+.++|...|+..
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--- 550 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--- 550 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---
Confidence 66666665543222222222 2234444445555555544443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEI--DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
+.+...|..+...|...|+.++|+.+|+++.+. .|+ ...+..+...+.+.|..++|..+|+.+.+..+-.+. ...
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~ 627 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKH 627 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHH
Confidence 234445555555555555555555555554432 232 233444444455555555555555555432211111 123
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcc
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMD 366 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g 366 (476)
|..+..++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.+.+....+++++..|. .+..++++|...|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 444455555555555555555543 12232 344444444555555555555555555544442 2234455666666
Q ss_pred cchHHHHHHHHHhc
Q 011845 367 IIDPALDRIKQLLN 380 (476)
Q Consensus 367 ~~~~A~~~~~~al~ 380 (476)
++++|.+..+.+.+
T Consensus 706 ~~~~a~~vr~~M~~ 719 (857)
T PLN03077 706 KWDEVARVRKTMRE 719 (857)
T ss_pred ChHHHHHHHHHHHH
Confidence 66666666555543
No 52
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.2e-22 Score=176.02 Aligned_cols=340 Identities=13% Similarity=0.048 Sum_probs=270.7
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
+++.++|.|...+.....+|...|+|++|++--.+.++.. |.-+..|..+|..+.-+|+|++|+..|.+.++.+|++..
T Consensus 27 ~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 27 EAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred HHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHH
Confidence 4788999999999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhCC------------------------HHHHHHHHHHhhccC---------------------------
Q 011845 82 AWHGWAVLELRQGN------------------------IKKARQLLAKGLKFC--------------------------- 110 (476)
Q Consensus 82 ~~~~la~~~~~~~~------------------------~~~A~~~~~~~~~~~--------------------------- 110 (476)
....++.++..... .+.+.....+.++.+
T Consensus 106 L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 106 LKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred HHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 88888877632200 000111111111111
Q ss_pred --------------CC------------c---------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845 111 --------------GG------------N---------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS 155 (476)
Q Consensus 111 --------------p~------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 155 (476)
|. . ..-...+|....+..++..|++.|..++.++ .+...+...+
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~a 264 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIA 264 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHH
Confidence 10 0 0124568888999999999999999999999 8888899999
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------
Q 011845 156 QMEMQQENNLAARQLFERAVQASPKNR-------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-------------- 214 (476)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 214 (476)
-+|...|.+.+.+.....+++...... .....+|..+...++++.|+.+|.+++.....
T Consensus 265 A~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~ 344 (539)
T KOG0548|consen 265 AVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKAL 344 (539)
T ss_pred HHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999999988887665432 22334566777788999999999998764322
Q ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 215 ------------DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 215 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
-..-...-|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.+.|.+..|+...+.+++++|+
T Consensus 345 k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 345 KEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 22233445788888999999999999999999999999999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
. ...|.+-|.++..+.+|++|.+.|+++++.+|++..+.-.+.+|...........++.++
T Consensus 425 ~---~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 425 F---IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 7 445777899999999999999999999999999998888888888765444444555555
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.7e-20 Score=164.93 Aligned_cols=373 Identities=20% Similarity=0.323 Sum_probs=265.0
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW 86 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 86 (476)
+.-+...|...|+--..++++..|..+|++++..+ ..+..+|..++.+-++......|..++++++..-|.-...|+..
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY 147 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence 33455677777888888888888888888888877 77788888888888888888888888888888888877888888
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLA 166 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 166 (476)
..+-...|+...|.++|++-+...|+ ..+|......-.+.+..+.|..+|++.+-.+|+ ...|...+..-.+.|+...
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHH
Confidence 88888888888888888888877764 344555555555555555555555555555442 3344444444444443333
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q 011845 167 ARQLFERAV----------------------------------------------------------------------- 175 (476)
Q Consensus 167 A~~~~~~a~----------------------------------------------------------------------- 175 (476)
|..+|++|+
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 333333332
Q ss_pred ----------HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHH-HHHHcCCHHHH
Q 011845 176 ----------QASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV---------LLQSLAL-LEYKYSTANLA 235 (476)
Q Consensus 176 ----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~-~~~~~~~~~~A 235 (476)
..+|.+.++|+.+..+....|+.+.-.+.|++++...|.... .|.+++. ......+.+.+
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 224444455666666666667777777777777766654321 2233321 12345677777
Q ss_pred HHHHHHHhccCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845 236 RKLFRRASEIDPR----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311 (476)
Q Consensus 236 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 311 (476)
.++|+.++++-|. .+.+|...+....++.+...|...+..++...|.+.. +..+..+-.++++++....+|+
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----Fk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----FKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----HHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777775 3467777788888888888888888888888887643 4455778889999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh----hh-cchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845 312 SSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT----EV-VDDASWVMGFMDIIDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 312 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 386 (476)
+-++..|.+..+|..+|.+...+|+.+.|..+|+.++++.. ++ +......-...|.++.|..+|++.|+..+...
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999988543 22 12333344567899999999999999888765
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.92 E-value=1.8e-22 Score=196.73 Aligned_cols=216 Identities=17% Similarity=0.075 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQ---------GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
++++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 345666666666666666666666666555432 22556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
+|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|+..+++++..
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666665544444444455556666666666665554
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 212 N-PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 212 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
. |+++..+..+|.++...|++++|+..+.++....|.....+..++..|...|+ +|...+++.++
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 3 45555556666666666666666666666555555555555555555555552 44444444433
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=172.70 Aligned_cols=265 Identities=15% Similarity=0.162 Sum_probs=239.9
Q ss_pred HHHHhCCHHHHHHHHHHhhccC---C-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845 89 LELRQGNIKKARQLLAKGLKFC---G-------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME 158 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 158 (476)
+++..++...|-......++.. | .+......+|.||.++|.+.+|.+.++..++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 3445666666665555544432 1 1234457899999999999999999999999877 578999999999
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL 238 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 238 (476)
.+..++..|+..+.+.++..|.+.......+.++..++++++|.++|+.+++.+|.+.++...+|.-|+..++++-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 318 (476)
|++.+++.-.+++.+.++|.+++..++++-++..|++++...........+|+++|.+....|++.-|..+|+-++..+|
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999887777888999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845 319 QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
++.+++.+++.+..+.|+.++|..++..+....|..
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 999999999999999999999999988887766643
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=5.2e-22 Score=193.44 Aligned_cols=262 Identities=13% Similarity=-0.023 Sum_probs=224.7
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcCcCcHH
Q 011845 14 YVALGKVLSK---QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL---------GNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 14 ~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++..|..+.. .+.+++|+..|+++++.+ |.++.++..+|.++... +++++|+..++++++.+|+++.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 4445554443 345789999999999998 89999999999887643 3489999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777778889
Q ss_pred ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
|++++|+..+++++... |+++..+..+|.++...|++++|+..+.++....|.+...+..++..+...|+ +|...++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 99999999999999875 77888999999999999999999999999999999888899999999988884 7777777
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
.+++.....+........++.-.|+.+.+..+ +++.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 76664433222233367777778888877776 666554
No 57
>PLN03077 Protein ECB2; Provisional
Probab=99.91 E-value=7.7e-21 Score=196.23 Aligned_cols=341 Identities=13% Similarity=0.057 Sum_probs=272.5
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADK-GHIAAWHGWA 87 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la 87 (476)
.+...|..+...|.+.|++++|+.+|+++.......+...+..+...+.+.|++++|.+++..+.+... .+..++..+.
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 467789999999999999999999999987665445666677777788888888888888888876543 3456777888
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH-----------------
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS----------------- 150 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------------- 150 (476)
..|.+.|++++|.++|+++.+ .+...|..+...|...|+.++|+.+|+++....+.+...
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHh
Confidence 888888888888888887654 345677888888888888888888888887543222222
Q ss_pred ------------------HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 151 ------------------WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 151 ------------------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
...+...|.+.|++++|...|+.. +.+...|..+...|...|+.++|+.+|+++.+..
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 234557788889999999998875 5677899999999999999999999999998753
Q ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 213 P-RDPVLLQSLALLEYKYSTANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 213 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
. .+..++..+...+...|.+++|..+|+.+.+..+ .+...|..+..++.+.|++++|.+.++++ ...|+. .+
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----~~ 659 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----AV 659 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----HH
Confidence 2 2456677777889999999999999999985432 23478899999999999999999999986 345553 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhh
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWV 361 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 361 (476)
|..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|.++.+.+.+......+...|+
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 555566778899999999999999999999999999999999999999999999998877655544444443
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=2.9e-20 Score=173.75 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=212.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHH-HHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHh
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWH-GWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKA 127 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~ 127 (476)
+.-|......|+++.|.+.+.+.....+ ++..++ ..+.+....|+++.|..++.++.+..|++.. .....+.++...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 4556666777888888877777655432 344444 4456668888999999999888888887753 334458888888
Q ss_pred ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH--------HHHHHHHHHcCCHH
Q 011845 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW--------HVWGIFEANMGFID 199 (476)
Q Consensus 128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~l~~~~~~~~~~~ 199 (476)
|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++... ..+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998888898888888888888888999999888888887665543321 22222222333444
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
...++++..-...|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..+++++++..+++.++.
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 4555555555556778888888888888888888888888888884 4445444444443 348888888888888888
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 280 DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.|+++.. +..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..+|++.+.
T Consensus 324 ~P~~~~l---~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLL---WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888543 566688888888888888888888888887654 45688888888888888877776654
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.4e-20 Score=171.79 Aligned_cols=340 Identities=17% Similarity=0.141 Sum_probs=264.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----cCcHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-QGENPY-IWQCWAVLENKLGNIGKARELFDASTVAD-----KGHIAA 82 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~ 82 (476)
..+.|+.++..+...|.-..|+.+.+...... .|.++. .+.....|....+.+++++.+..+++... --.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 34678888888888888888888888877654 133333 33444456667788888888888887622 112456
Q ss_pred HHHHHHHHHHhC-----------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhH
Q 011845 83 WHGWAVLELRQG-----------NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCAS 150 (476)
Q Consensus 83 ~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 150 (476)
+..+|.+|..+- ...+++..++++++.+|.|+.+.+.++.-|...++.+.|....+++++.+ .+++.+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~ 515 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA 515 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence 666676665322 24577888888888888888888888888888888888888888888884 456778
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------
Q 011845 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV------------------- 211 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 211 (476)
|..++.++...+++.+|+.+...++...|+|.........+....++.++++..+...+..
T Consensus 516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 8888888888888888888888888888776555555555555555555555544333210
Q ss_pred ---------------------------------------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 212 ---------------------------------------------NPRD-----PVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 212 ---------------------------------------------~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
.|+. ...|...+..+...+..++|..++.+
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 0111 12566788889999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhCCC
Q 011845 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARR--LFRSSLNINSQ 319 (476)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~ 319 (476)
+-.++|..+..|+..|.++...|+..+|...|..++.++|++... ...+|.++.+.|+..-|.. .+..+++++|.
T Consensus 676 a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 676 ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---MTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999665 5677999999999888888 99999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 320 SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 320 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
++++|+.+|.++...|+.++|.+.|..+++...
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999988544
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=166.42 Aligned_cols=233 Identities=16% Similarity=0.121 Sum_probs=165.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
..+|.||+++|.+.+|...++..+...| .++.+..++.+|.+..+...|+.++.+.+...|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4567777777777777777777776554 466677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
+++|.++|+.+++.+|.+.++...+|.-|+-.++++-|+.+|+++++..-.+++.+.++|.|....++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 77777777777777777777766667777777777777777777777777777777777777777777777777777776
Q ss_pred hcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 210 AVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 210 ~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
.... .-.++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 5433 1245677777777777777777777777777777777777777777777777777777777766666654
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=9.1e-22 Score=177.52 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=185.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677777788888888888888888888888888888888888887888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHhcCCCchhHHH-------HHHHHHHHhccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHH
Q 011845 130 YEQARNLFRQATKCNPKSCASWI-------AWSQMEMQQENNLAARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p~~~~~~~-------~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~ 200 (476)
-.+|+.++.+-+...|.....-. ....-......+..-.+.|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 77888888877776654321110 000011122234445566666666666 577888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 280 (476)
|+.+|+.++...|++...|+.||-.+....+.++|+..|.+|+++.|....+++++|..++..|.|.+|..+|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
Q ss_pred CCCh----h---HHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 281 STTE----S---AARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 281 ~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
+... . .-.+|..|-.++...++.+-+....
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 4310 0 0123444456666666666554443
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=176.62 Aligned_cols=257 Identities=15% Similarity=0.153 Sum_probs=222.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHV-------WGIFEANMGFIDKGKKLLKIGHAVNP--RDPVLLQSLALLEYKYSTANL 234 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 234 (476)
-.+|..++.+.+...|.....-.. ...-......+..-.+.|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887654211110 00011112234455677777777777 789999999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
|+.+|+.++...|++...|..||-.+....+.++|+..|.+|+++.|.... +.+++|..+..+|.|++|.++|-.+|
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR---~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR---VRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee---eehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999954 57899999999999999999999999
Q ss_pred hhCCC----------cHHHHHHHHHHHHHcCChHHHHHH
Q 011845 315 NINSQ----------SYITWMTWAQLEEDQGNSVRAEEI 343 (476)
Q Consensus 315 ~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 343 (476)
.+.+. +..+|..|-.++...++.+-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 88644 135888888888888888865544
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=1e-20 Score=169.36 Aligned_cols=218 Identities=13% Similarity=0.104 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHhhcCc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845 60 GNIGKARELFDASTVADK----GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135 (476)
Q Consensus 60 g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 135 (476)
+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666777777764332 2245677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD 215 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 215 (476)
.|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++... ....+....+++++|+..+.+.....+.+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 77777777777777777777777777777777777777777777765321 11223344566777777776655433222
Q ss_pred HHHHHHHHHHHHHcCCHHH--HHHHHHHH----hccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 216 PVLLQSLALLEYKYSTANL--ARKLFRRA----SEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~--A~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
. |. .+.+....|+... +...+.+. .+..|..+.+|+.+|.++...|++++|+.+|++++..+|
T Consensus 199 ~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 199 Q--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred c--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 11 2334444444432 22222222 234455667788888888888888888888888888775
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=3.6e-20 Score=165.84 Aligned_cols=239 Identities=18% Similarity=0.120 Sum_probs=190.3
Q ss_pred hCCHHHHHHHHHHhhccCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845 93 QGNIKKARQLLAKGLKFCG----GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR 168 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 168 (476)
.+..+.++..+.+++...| ..+..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567888899999996443 336789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..|.+.....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999874222 122345678899999999887654332
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CcHHH
Q 011845 249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE----SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS-QSYIT 323 (476)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 323 (476)
. .|. .+.++...|+...+ ..++.+.+...... .....++.+|.++...|++++|+.+|++++..+| +..+.
T Consensus 198 ~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 198 E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 2 232 35566667777554 34444442211111 1245788999999999999999999999999996 66677
Q ss_pred HHHHHHHHHHcCC
Q 011845 324 WMTWAQLEEDQGN 336 (476)
Q Consensus 324 ~~~l~~~~~~~g~ 336 (476)
.+.+..+....+.
T Consensus 274 ~~~~~e~~~~~~~ 286 (296)
T PRK11189 274 RYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHhh
Confidence 7777766655444
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.6e-18 Score=149.28 Aligned_cols=379 Identities=20% Similarity=0.352 Sum_probs=272.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++|..+..+...|+..+.+-++......|..++.+++... |.-...|+.+..+-..+|+...|.++|++-+.-.|+ ..
T Consensus 98 RALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eq 175 (677)
T KOG1915|consen 98 RALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQ 175 (677)
T ss_pred HHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HH
Confidence 3566666777777777777777777777777777777776 666667777777777777777777777776665553 33
Q ss_pred HHH---------------------------------HHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHH
Q 011845 82 AWH---------------------------------GWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTLALLEA 125 (476)
Q Consensus 82 ~~~---------------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~ 125 (476)
+|. ..+..-.+.|+..-|..+|+++++...++. .++...|..-.
T Consensus 176 aW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 176 AWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444 444444455555555555555544332221 12233333333
Q ss_pred HhccHHHHHHHHHHHHhc--------------------------------------------CCCchhHHHHHHHHHHHh
Q 011845 126 KANRYEQARNLFRQATKC--------------------------------------------NPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~--------------------------------------------~p~~~~~~~~la~~~~~~ 161 (476)
.+..++.|..+|+-++.. +|.+-++|+.+..+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 444444444444433332 566677888888888889
Q ss_pred ccHHHHHHHHHHHHHcCCCcH---------HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNR---------FAWHVWGIF-EANMGFIDKGKKLLKIGHAVNPRD----PVLLQSLALLEY 227 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~ 227 (476)
|+.+.-.+.|++|+...|... .+|.+++.. -....+.+.+.++|+.++.+-|.. ..+|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 999999999999999877642 233333322 245689999999999999999865 557889999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHH
Q 011845 228 KYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAAR 307 (476)
Q Consensus 228 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 307 (476)
++.+...|.+.+-.++...|.+ .++-....+-.+.++++....+|++.++..|.+... +...|.+-..+|+.+.|.
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~---W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA---WSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH---HHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999986 677778888889999999999999999999999554 667799999999999999
Q ss_pred HHHHHHHhhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhh-------hcc-----------c
Q 011845 308 RLFRSSLNINSQSY--ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMG-------FMD-----------I 367 (476)
Q Consensus 308 ~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------~~g-----------~ 367 (476)
.+|+-|+....-+. ..|-.+..+....|.++.|..+|+++++..+-+......+-+ ..+ .
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 99999987653332 577888899999999999999999999865533222222111 222 4
Q ss_pred chHHHHHHHHHhccccCCC
Q 011845 368 IDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 368 ~~~A~~~~~~al~~~p~~~ 386 (476)
...|...|++|.....+..
T Consensus 572 ~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKEST 590 (677)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5678888888877655543
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=1.8e-18 Score=158.16 Aligned_cols=248 Identities=17% Similarity=0.118 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..++..+.-.+..++|.+.++..+.+++.. |..++.+-..|..+..+|+.++|......++..++.+...|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 455666666777888888888888888876 8888888888888888888888888888888888888888888888888
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF 171 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 171 (476)
...+|++|+++|+.++...|+|..++..++.+..++++++.....-.+.++..|.....|...+..+...|++..|...+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHcC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 172 ERAVQAS---PKN-----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 172 ~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
+...+.. |+. .........+....|.+++|++.+..--...-+........+.++.+.+++++|..+|...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 7766544 322 22333444455556666666655544322222233344455666666666667776666666
Q ss_pred ccCCCCHHHHHHHHHHH
Q 011845 244 EIDPRHQPVWIAWGWME 260 (476)
Q Consensus 244 ~~~~~~~~~~~~l~~~~ 260 (476)
..+|++...+..+-.++
T Consensus 247 ~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKAL 263 (700)
T ss_pred hhCchhHHHHHHHHHHH
Confidence 66666655555444444
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=1.6e-18 Score=158.45 Aligned_cols=376 Identities=13% Similarity=0.101 Sum_probs=277.1
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
+|+.+|..++.+-..|..+...|+-++|....+.++..+ +.+...|..+|.++....+|++|+.+|..++...|+|..+
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qi 111 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQI 111 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 467899999999999999999999999999999999877 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCc-----hhHHHHH
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN---PKS-----CASWIAW 154 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~-----~~~~~~l 154 (476)
|..++.+..+.++++.....-.+.++..|.....|...+..+...|++..|..+.+...+.. |+. .......
T Consensus 112 lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 112 LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877654 222 1233334
Q ss_pred HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 011845 155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL 234 (476)
Q Consensus 155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 234 (476)
..+....|.+++|.+.+..--...-+........+.++..++++++|..+|...+..+|++...+..+-.++..-.+.-+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 44555556655555555443322223333444556666666666666666666666666665443333322210000000
Q ss_pred HH-H--------------------------------------------------------------HHHHH-------hc
Q 011845 235 AR-K--------------------------------------------------------------LFRRA-------SE 244 (476)
Q Consensus 235 A~-~--------------------------------------------------------------~~~~~-------~~ 244 (476)
+. . ++++. +.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 00 0 11111 11
Q ss_pred cC------------CCCHHHH--HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 245 ID------------PRHQPVW--IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 245 ~~------------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
-. |-...+| +.++.-+...|+++.|..+++.++...|+. .+.+..-|.++...|++++|..++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl---iEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL---IELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH---HHHHHHHHHHHHhcCChHHHHHHH
Confidence 10 1122233 457777888999999999999999988876 445777799999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc------------chhhhhhhhcccchHHHHHHHHH
Q 011845 311 RSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV------------DDASWVMGFMDIIDPALDRIKQL 378 (476)
Q Consensus 311 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~~~g~~~~A~~~~~~a 378 (476)
..+.+++-.|..+-..-+.-..+..+.++|.++...+........ ..-|..|..+|++..|++-|..+
T Consensus 429 ~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 429 DEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 999999887777777788888999999999998887776443222 23456777888888888877666
Q ss_pred hccc
Q 011845 379 LNLE 382 (476)
Q Consensus 379 l~~~ 382 (476)
-++.
T Consensus 509 ~k~~ 512 (700)
T KOG1156|consen 509 EKHY 512 (700)
T ss_pred HHHH
Confidence 5543
No 68
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=1.7e-20 Score=178.42 Aligned_cols=341 Identities=14% Similarity=0.119 Sum_probs=270.3
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc--
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-- 79 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 79 (476)
++++++|.-+.++..+|.+|....+...|..+|.++.+.+ +.+...+-..+..|....+++.|..+.-.+-+..|..
T Consensus 483 ~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 483 RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 6788999999999999999998889999999999999998 8888889889999999889988888866666655543
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..+.|.+.-..+..+.+..
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 35666788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhccHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------
Q 011845 160 QQENNLAARQLFERAVQASPKN-------RFAWHVWGIFEANMGFIDKGKKLLKIGHAV--------------------- 211 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------- 211 (476)
..|+|.+|+..+...+...... .+.+...+..+...|-...|...+++.++.
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 8888888888887776654332 233333333333334333343333333210
Q ss_pred --------C----------------------CC-------------------CHHHHHHHHHHHHH--------cCCHHH
Q 011845 212 --------N----------------------PR-------------------DPVLLQSLALLEYK--------YSTANL 234 (476)
Q Consensus 212 --------~----------------------~~-------------------~~~~~~~la~~~~~--------~~~~~~ 234 (476)
. |+ ++..|+++|..|++ ..+...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 0 11 12357777777665 223357
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 235 ARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
|+.++.++++...++...|..+|.+ ...|++.-|..+|-+.....|.... .|.++|.++.+..+++.|...|.++.
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~---~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC---QWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh---heeccceeEEecccHHHhhHHHHhhh
Confidence 8999999999999999999999988 5668999999999999999888844 47888999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 011845 315 NINSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347 (476)
Q Consensus 315 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 347 (476)
.++|.+...|...+.+....|+.-++..++...
T Consensus 878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888888877763
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=8e-20 Score=146.54 Aligned_cols=202 Identities=20% Similarity=0.157 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQA--SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLF 239 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 239 (476)
|++++|...|++++.. .+..+..+.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554432 12333444444555555555555555555555555544444444444444455554454444
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
++.....+-....+.....+....|+-+.|-++=.+.....|..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 44444444334444444444444444444444444444444444
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=9.3e-20 Score=159.43 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 44555556666666666666666666655555555555555666666666666666666665555555555555555555
Q ss_pred HhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 203 (476)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.++..+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555432 22333444455555555555555555555555555444444455555555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
.+++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555544444444444444444444444444444444433
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=9.5e-20 Score=146.11 Aligned_cols=206 Identities=13% Similarity=0.044 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 203 (476)
.+|++++|...|++++..- +..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777777642 34456777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 251 (476)
++++.....+.....+.....+....|+-+.+-.+=.+.....|...+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777766666666666667777777777777666666666776654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.87 E-value=1e-19 Score=159.14 Aligned_cols=198 Identities=23% Similarity=0.229 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011845 160 QQENNLAARQLFERAVQAS--PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK 237 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 237 (476)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665532 23344455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845 238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
.+++++...|.++..+..++.++...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555544444555555555555555555555444443
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.7e-20 Score=158.29 Aligned_cols=270 Identities=16% Similarity=0.072 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
+-....|..++.+.+|.+|+..|..+++.. |+++..|...+.+++..|++++|.-..++.+.++|.........+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 344566777777888888888888888887 7778888888888888888888888888888888887777777777777
Q ss_pred HhCCHHHHHHHHHHhh------------ccC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845 92 RQGNIKKARQLLAKGL------------KFC------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA 153 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 153 (476)
..++..+|...++..- .+- |....+....+.|+...|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 7777777665554111 000 1112333445556666666666666666666666666666666
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----H
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNR------------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP----V 217 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 217 (476)
.|.+++..++.+.|+..|++++.++|+.. ..|..-|.-.++.|++..|.++|..++.++|.+. .
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 66666666666666666666666666542 2334445555555666666666666666655542 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
.|.+.+.+..+.|+..+|+..++.+++++|....++...|.++...+++++|++.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45555555555566666666666666666555555555566666666666666666665555443
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3e-18 Score=143.93 Aligned_cols=268 Identities=17% Similarity=0.108 Sum_probs=124.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----HHHHHHHHHHHHHh
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-----EYIYQTLALLEAKA 127 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~ 127 (476)
|.-+.-..+.++|+..|..+++.+|...++...+|.++...|..+.|+.+-+..+.. |+- ..+...+|.-|...
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence 333334445555555555555555555555555555555555555555554444332 221 12344455555555
Q ss_pred ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
|-++.|...|........--..+...+..+|....+|++|+..-++..++.+..... .+
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eI------------------- 179 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EI------------------- 179 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HH-------------------
Confidence 555555555555444333333444455555555555555555555555444432100 00
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845 208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287 (476)
Q Consensus 208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 287 (476)
...+..++..+....+.+.|+..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+.. .
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~ 249 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--S 249 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--H
Confidence 123334444444444555555555555555555555555555555555555555555555555544432 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
.++..+..+|.+.|+.++...++.++.+..++.. +-..++.+.....-.+.|...+.+-+...|.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 2344444555555555555555555554443322 2233333333333344444444444444443
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.86 E-value=2.6e-19 Score=170.54 Aligned_cols=386 Identities=15% Similarity=0.144 Sum_probs=242.8
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG-ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
++.+++|.+++++-..+..|.+..+++.|..+.-.+-+..+. .....|..+|..|...++...|+..|+.++..+|.+.
T Consensus 517 KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~ 596 (1238)
T KOG1127|consen 517 KAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY 596 (1238)
T ss_pred HHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH
Confidence 567889999999999999999999999998886655444311 1234566788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh-----------
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA----------- 149 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----------- 149 (476)
..|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+........
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999988888888888888888888888777766554221111
Q ss_pred --------------------------------------------------------------------------------
Q 011845 150 -------------------------------------------------------------------------------- 149 (476)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (476)
T Consensus 677 ~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d 756 (1238)
T KOG1127|consen 677 DAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND 756 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh
Confidence
Q ss_pred --------------------HHHHHHHHHHH--------hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 011845 150 --------------------SWIAWSQMEMQ--------QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG 201 (476)
Q Consensus 150 --------------------~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 201 (476)
.|+++|..|++ ..+...|+.++.+++++..++...|..+|.+ ...|++.-|
T Consensus 757 ~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~a 835 (1238)
T KOG1127|consen 757 LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACA 835 (1238)
T ss_pred HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhh
Confidence 13333333332 0112245555555555555555555555544 333555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
..+|-+.+...|.....|.++|.++....+++.|...|.++..++|.+...|...+.+....|+.-++...|........
T Consensus 836 QHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 836 QHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555544222211
Q ss_pred CChhH--HHHHHHHHHHHHHhCCHHHHHHH----------HHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 282 TTESA--ARCLQAWGVLEQRVGNLSAARRL----------FRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 282 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~----------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
..... ...+..--......|++++-+.. .++.+...|+...++...+....+++.+..|.+...+.+.
T Consensus 916 ~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 916 KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11122222333344444443332 3334445677777787888888888877777776666543
Q ss_pred ---------hhhhhcch-------------------------------hhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845 350 ---------QRTEVVDD-------------------------------ASWVMGFMDIIDPALDRIKQLLNLEKSSYKE 388 (476)
Q Consensus 350 ---------~~~~~~~~-------------------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 388 (476)
+.+.+... .....+..++++++.+.|++++.+..++...
T Consensus 996 lLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~ 1074 (1238)
T KOG1127|consen 996 LLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDK 1074 (1238)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccch
Confidence 01101111 1123455778999999999999987776653
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.9e-17 Score=139.20 Aligned_cols=266 Identities=16% Similarity=0.103 Sum_probs=210.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-----HHHHHHHHHH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-----IAAWHGWAVL 89 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~ 89 (476)
+..|.-++-..+.++|+..|-.+++.+ |...++...+|.++.+.|..+.|+.+-+..+.. |+- ..+...+|.-
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 445666677889999999999999987 889999999999999999999999998887754 433 3577889999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHhccH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQMEMQQENN 164 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~ 164 (476)
|+..|-++.|..+|........--..+...+..+|....+|++|++.-++..++.+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999877666678999999999999999999999999999987653 3566677777777888
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
+.|+..+.++++.+|++..+-..+|.++...|+++.|++.++.+++.+|.. +.+...+..+|...|+.++.+..+.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887765 4456666777777777777777777777
Q ss_pred ccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 244 EIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
+..++. .+-..++..-....-.+.|..++.+-+...|+-
T Consensus 277 ~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 277 ETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 666553 344444444444455566666666666666653
No 77
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=7.2e-19 Score=156.62 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccH--HHHHHH
Q 011845 60 GNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRY--EQARNL 136 (476)
Q Consensus 60 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~--~~A~~~ 136 (476)
+++++|+..+.++++.+|.+..+|...+.++...| ++++++..+.++++.+|++..+|...+.++...|+. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 45555556666666666666666666655555555 355666666666666666666666555555555542 455555
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHH
Q 011845 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM---GFI----DKGKKLLKIGH 209 (476)
Q Consensus 137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~~ 209 (476)
++++++.+|.+..+|...+.++...|++++++..+.++++.+|.+..+|+..+.++... |.+ ++++.+..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666655555443 212 34555555666
Q ss_pred hcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC------------------Chh
Q 011845 210 AVNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG------------------NLD 267 (476)
Q Consensus 210 ~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~ 267 (476)
..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++.... ..+
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDST 290 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHH
Confidence 6666666666666666555 233445666666666666666666666666665421 235
Q ss_pred HHHHHHHHHHccCCC
Q 011845 268 TARELYERALSIDST 282 (476)
Q Consensus 268 ~A~~~~~~a~~~~~~ 282 (476)
+|..+++..-+.+|-
T Consensus 291 ~a~~~~~~l~~~d~i 305 (320)
T PLN02789 291 LAQAVCSELEVADPM 305 (320)
T ss_pred HHHHHHHHHHhhCcH
Confidence 677777776444443
No 78
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=1.2e-18 Score=155.28 Aligned_cols=234 Identities=13% Similarity=0.057 Sum_probs=191.6
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH--HH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN--LA 166 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~--~~ 166 (476)
+...++.++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..+|...+.++...|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 334567788888899999999999999999999998888 678999999999999999999999998888888764 67
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 011845 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY---STA----NLARKLF 239 (476)
Q Consensus 167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~ 239 (476)
++.+++++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|...+.+.... |.+ ++++.+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999988887765 223 4678888
Q ss_pred HHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC--------------
Q 011845 240 RRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG-------------- 301 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g-------------- 301 (476)
.+++..+|++..+|..++.++.. .++..+|...+.+++...|.+..+ +..++.+|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a---l~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA---LSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH---HHHHHHHHHhhhccchhhhhhhhccc
Confidence 89999999999999999888877 355677888888888887777544 455577776532
Q ss_pred ----CHHHHHHHHHHHHhhCCCcHHHHHH
Q 011845 302 ----NLSAARRLFRSSLNINSQSYITWMT 326 (476)
Q Consensus 302 ----~~~~A~~~~~~al~~~p~~~~~~~~ 326 (476)
..++|..+++..-+.+|=-...|..
T Consensus 284 ~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 284 EELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred cccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3478998888886667765555543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.85 E-value=1.9e-18 Score=160.47 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=185.4
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc----
Q 011845 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC--------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA---- 177 (476)
Q Consensus 110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 177 (476)
.|....+...++..|...|++++|+..++.+++. .|.-......+|.+|...+++.+|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555667777888888888888888888888887 4544455566888888888888888888888875
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845 178 ----SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN--------PRDPVLLQSLALLEYKYSTANLARKLFRRASEI 245 (476)
Q Consensus 178 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 245 (476)
+|....++.+++.+|...|++++|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23345678888888888888888888888887653 222346777888888888999988888888765
Q ss_pred C--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC-----CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845 246 D--------PRHQPVWIAWGWMEWKEGNLDTARELYERALSID-----STTESAARCLQAWGVLEQRVGNLSAARRLFRS 312 (476)
Q Consensus 246 ~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 312 (476)
. +.-+..+.++|.+|..+|++++|.++|++++++. ..+......+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 2334678889999999999999999999988763 22333455677888888888888888888888
Q ss_pred HHhh-------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 313 SLNI-------NSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 313 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
+..+ .|+....+.+|+.+|..+|+++.|.++.+.+..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 7665 345556788899999999999999988888775
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.84 E-value=3.2e-18 Score=158.94 Aligned_cols=239 Identities=17% Similarity=0.142 Sum_probs=194.8
Q ss_pred CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 011845 144 NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA--------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV---- 211 (476)
Q Consensus 144 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 211 (476)
.|.-..+...++..|...|++++|+..++++++. .|.-......+|.+|...+++.+|+.+|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3555567777999999999999999999999987 4444555566999999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 212 ----NPRDPVLLQSLALLEYKYSTANLARKLFRRASEID--------PRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 212 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
+|....++.+||.+|...|++++|..++++++++. |.-...+..++.++..++++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23335578999999999999999999999988763 233456778899999999999999999998876
Q ss_pred -----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 280 -----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN--------SQSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 280 -----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
.++++....++.++|.+|...|++++|.++|++++.+. +.....+..++..+.+.+.+.+|..+|..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 45565778889999999999999999999999999863 33346778899999999999999998888
Q ss_pred HHhhhh----------hhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845 347 YFQQRT----------EVVDDASWVMGFMDIIDPALDRIKQLLNLE 382 (476)
Q Consensus 347 ~~~~~~----------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 382 (476)
+..... ..+.+++-+|..+|++++|+++.++++...
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 876432 123568889999999999999999888643
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.84 E-value=1.5e-17 Score=154.97 Aligned_cols=310 Identities=15% Similarity=0.019 Sum_probs=213.0
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
.+|+++.++..+|..+...|+++.|...+.++....++ +..+.....+.++...|++++|...+++++..+|.+..++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 37999999999999999999999998888888766522 2345667778889999999999999999999999988776
Q ss_pred HHHHHHHHHh----CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 84 HGWAVLELRQ----GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 84 ~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
.. +..+... +....+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 64 4444444 444555555555445667777788888999999999999999999999999999889999999999
Q ss_pred HhccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHH---HHHHHHHHcC
Q 011845 160 QQENNLAARQLFERAVQASPKNR----FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DPVLLQ---SLALLEYKYS 230 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~la~~~~~~~ 230 (476)
..|++++|+.++++++...|.++ ..+..++.++...|++++|+..+++++...|. ...... .+...+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999998876432 34567888999999999999999988766552 121111 1122222333
Q ss_pred CHHHHHHH---HHHHhccCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---C---hhHHHHHHHHHHHHHH
Q 011845 231 TANLARKL---FRRASEIDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSIDST---T---ESAARCLQAWGVLEQR 299 (476)
Q Consensus 231 ~~~~A~~~---~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~---~~~~~~~~~l~~~~~~ 299 (476)
....+... ........+. ........+.++...|+.++|...++........ . .....+....+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 22222221 1111111111 1222235666667777777777777766543221 1 1112333445666677
Q ss_pred hCCHHHHHHHHHHHHhh
Q 011845 300 VGNLSAARRLFRSSLNI 316 (476)
Q Consensus 300 ~g~~~~A~~~~~~al~~ 316 (476)
.|++++|...+..++..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777776643
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.8e-19 Score=154.07 Aligned_cols=270 Identities=13% Similarity=0.051 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
.-....|..+++..+|.+|+..+..++...|++...|...+..++..|++++|.-..++.+++.|.....+...+.++..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 34456677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHH------------hcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845 127 ANRYEQARNLFRQAT------------KCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW 188 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 188 (476)
.++..+|.+.++..- .+. |....+....+.++...|++++|...--..+++++.+.++++..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 888888876665221 001 11223445556777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HH
Q 011845 189 GIFEANMGFIDKGKKLLKIGHAVNPRDPV------------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQ----PV 252 (476)
Q Consensus 189 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 252 (476)
|.++...++.+.|+..|++++.++|++.. .+..-|.-.++.|++..|.+.|..++.++|++. ..
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 77777777777777777777777776533 344556666677777777777777777777543 45
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
|.+.+.+..+.|+..+|+...+.++.+++.. ...+...|.|+..++++++|++.|+++++...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~sy---ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSY---IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6667777777777777777777777776655 334566677777777777777777777766544
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.83 E-value=1.1e-16 Score=149.28 Aligned_cols=308 Identities=14% Similarity=-0.013 Sum_probs=202.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQT 119 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 119 (476)
|+.+..+..+|.++...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++..|.+..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 7778888888888888888888888888877666544 4556677888888888888888888888888888766654
Q ss_pred HHHHHHHhcc----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845 120 LALLEAKANR----YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM 195 (476)
Q Consensus 120 la~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 195 (476)
+..+...|+ ...+...+.......|.....+..+|.++...|++++|...++++++..|+++.++..++.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 444444443 334444443333445555666677788888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHH---HHHHHHHHcCCh
Q 011845 196 GFIDKGKKLLKIGHAVNPRDP----VLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWI---AWGWMEWKEGNL 266 (476)
Q Consensus 196 ~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~ 266 (476)
|++++|+..+++++...|.++ ..+..++.++...|++++|+..|++++...|. ...... .+...+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888888766432 24557888888888888888888888766552 111111 122222334433
Q ss_pred hHHHHH--H-HHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHc
Q 011845 267 DTAREL--Y-ERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ---------SYITWMTWAQLEEDQ 334 (476)
Q Consensus 267 ~~A~~~--~-~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~ 334 (476)
..+..+ + .......+.. .....-...+.++...|+.++|...++........ ...+....+.++...
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDH-GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333332 1 1111111221 11111224577777788888888887776543211 234456666777777
Q ss_pred CChHHHHHHHHHHHhhhh
Q 011845 335 GNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 335 g~~~~A~~~~~~~~~~~~ 352 (476)
|++++|.+.+..++....
T Consensus 321 g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 321 GNYATALELLGPVRDDLA 338 (355)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 777777777777665443
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.8e-16 Score=133.84 Aligned_cols=367 Identities=11% Similarity=-0.008 Sum_probs=217.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------------cCc-
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV--------------ADK- 77 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------~~p- 77 (476)
.-.-+|.+++..|+|++|+..|+-+.... ..+.+.+..+|.|++-.|.|.+|..+-.++-+ .+.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 34456677777777777777777776654 45566777777777777777777766655421 000
Q ss_pred -----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 78 -----------GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 78 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
+..+-...++.+.+..-.|++|+++|.+++..+|+...+-..++.||.++.-++-+.+++.-.++..|+
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 001122344555555556666666666666666666666666666666666666666666666666666
Q ss_pred chhHHHHHHHHHHHh--ccHH----------------HHHHHHH----------HHHHcCCC----cHHHHHHHHHHHHH
Q 011845 147 SCASWIAWSQMEMQQ--ENNL----------------AARQLFE----------RAVQASPK----NRFAWHVWGIFEAN 194 (476)
Q Consensus 147 ~~~~~~~la~~~~~~--~~~~----------------~A~~~~~----------~a~~~~~~----~~~~~~~l~~~~~~ 194 (476)
++.+....+...++. |+.. .+..+++ -+++.-|. -|++..+++..|..
T Consensus 218 StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~ 297 (557)
T KOG3785|consen 218 STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLN 297 (557)
T ss_pred cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecc
Confidence 665555554444332 1111 1111111 01111121 13555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---hccC------CCCHHHHHHHHHHHHHcCC
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA---SEID------PRHQPVWIAWGWMEWKEGN 265 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~---~~~~------~~~~~~~~~l~~~~~~~g~ 265 (476)
+++..+|..+++ ..+|..|.-+...|.+....|+--...+.++.+ +++- -+.......++.+++-..+
T Consensus 298 q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 298 QNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred cccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 666666666554 345666666666666666555433222222211 1111 1122334455666666666
Q ss_pred hhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCChHHHHHHH
Q 011845 266 LDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQSYITWMTWAQLEEDQGNSVRAEEIR 344 (476)
Q Consensus 266 ~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 344 (476)
+++.+.++...-....++.. ..+++++++...|++.+|.+.|-+.-... .+.......+++||.+.+.++-|.+++
T Consensus 375 FddVl~YlnSi~sYF~NdD~---Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDD---FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcch---hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 77777666655554444433 35678999999999999999998775544 333445578899999999999998886
Q ss_pred HHHHhhhh--hhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845 345 NLYFQQRT--EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 345 ~~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 386 (476)
-+.-.... ......+..++..+.+-=|.+.|...-.++|+-.
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 55433222 2335567777788888888888888888888643
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7.7e-15 Score=133.28 Aligned_cols=346 Identities=13% Similarity=0.094 Sum_probs=238.7
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
+++...|++..+......++++.++|++|+...+.-.... ......+..|.|.++.+..++|+..++ ..++.+..
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ 111 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK 111 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence 4567789999999999999999999999996665542211 122233788999999999999999999 34566677
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCC------------------------------C-cHHHHHHHHHHHHHhccH
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCG------------------------------G-NEYIYQTLALLEAKANRY 130 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------------------~-~~~~~~~la~~~~~~g~~ 130 (476)
+....|.+++++|+|++|..+|+...+.+. . +.+.+++.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 888999999999999999999998865422 1 345678899999999999
Q ss_pred HHHHHHHHHHHhcCC-------Cc--------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH-----------
Q 011845 131 EQARNLFRQATKCNP-------KS--------CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA----------- 184 (476)
Q Consensus 131 ~~A~~~~~~~~~~~p-------~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------- 184 (476)
.+|++.+++++++.. .+ ..+...++.++..+|+.++|...|...+..+|.+...
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhh
Confidence 999999999954421 11 2256788999999999999999999999887755311
Q ss_pred --------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845 185 --------------------------------------WHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226 (476)
Q Consensus 185 --------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 226 (476)
+.+.+.+....+.-+.+.+...+.-...|.............
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK 351 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH
Confidence 111122222223333333333222222333222222233333
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHH--------HHHccCCCChhHHHHHHHHHHHH
Q 011845 227 YKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYE--------RALSIDSTTESAARCLQAWGVLE 297 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~l~~~~ 297 (476)
.+...+.+|+.++....+.+|.. ..+.+.++.+...+|+++.|++.+. ...+...... +...+-..+
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~----~V~aiv~l~ 427 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG----TVGAIVALY 427 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh----HHHHHHHHH
Confidence 33347888999999999999887 5678888999999999999999999 3333322221 122334555
Q ss_pred HHhCCHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc
Q 011845 298 QRVGNLSAARRLFRSSLN-------INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD 356 (476)
Q Consensus 298 ~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 356 (476)
.+.++.+.|...+.+++. ..+.-...+...+.+..+.|+.++|...++..++..+....
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 666665444444444443 33334456777888888899999999999999886664443
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2e-15 Score=128.75 Aligned_cols=353 Identities=14% Similarity=0.012 Sum_probs=245.2
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA 99 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 99 (476)
-+....+|..|+..++-....+..........+|.|++..|+|++|+..|.-+.+.+.-+.+.+..++.+++-.|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 34567899999999998876553333456677899999999999999999999987777789999999999999999999
Q ss_pred HHHHHHhhcc--------------CC------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845 100 RQLLAKGLKF--------------CG------------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA 153 (476)
Q Consensus 100 ~~~~~~~~~~--------------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 153 (476)
..+..++-+. +. +..+-...++.+.+..-.|++|+++|.+++..+|+....-..
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 9887766331 00 111223446666666777888888888888888887777778
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG------------------------- 208 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------------- 208 (476)
++.+|.+..-++-+.+++.-.++..|+++.+....+...++.=+-..|....+..
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 8888888888888888888888888888777766666555432211121111111
Q ss_pred ---HhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH---c
Q 011845 209 ---HAVNPR----DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL---S 278 (476)
Q Consensus 209 ---~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~---~ 278 (476)
++.-|. -|++..+++..|.++++.++|+.+++ ..+|..|.-+...|.++...|+--...+.++-+. +
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 111121 25567778888888888888887765 4578888878888888877776554444443332 2
Q ss_pred cCCCChhH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh--
Q 011845 279 IDSTTESA---ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE-- 353 (476)
Q Consensus 279 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 353 (476)
+-..+... .---..++.+++-..++++.+.++...-...-++....+++++.....|++.+|.+++-++......
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 21111100 0012334677777788888888888777777788888899999999999999999987766543211
Q ss_pred --hcchhhhhhhhcccchHHHHHH
Q 011845 354 --VVDDASWVMGFMDIIDPALDRI 375 (476)
Q Consensus 354 --~~~~~~~~~~~~g~~~~A~~~~ 375 (476)
....++.+|...++.+-|-+.+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHH
Confidence 1234666777777777665544
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.77 E-value=7.4e-15 Score=138.52 Aligned_cols=304 Identities=13% Similarity=0.067 Sum_probs=230.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
..++++....++...|++++|++.++...... .+...+....|.++.++|++++|...|..++..+|++...+..+..+
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 45778888999999999999999999876665 67788889999999999999999999999999999999999888888
Q ss_pred HHHhC-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 90 ELRQG-----NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ-ARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 90 ~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..-.. +.+.-..+|++.....|....+... ...+..-..+.. +..++...+.. ..|.+...+-.+|....+
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH
Confidence 73333 5677788899888888765433222 222222223433 34445555544 345566666566654443
Q ss_pred HHHHHHHHHHHHHc---------------CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845 164 NLAARQLFERAVQA---------------SPKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226 (476)
Q Consensus 164 ~~~A~~~~~~a~~~---------------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 226 (476)
..-...++...+.. .|... .+++.++..|...|++++|+.++++++...|..++.+...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33333333333221 11222 35578899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHHHh
Q 011845 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE------SAARCLQAWGVLEQRV 300 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~ 300 (476)
...|++.+|...++.+..+++.+-.+-...+..+.+.|+.++|...+......+.+.. .........|.+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888899999999999999999988766542111 1123345669999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q 011845 301 GNLSAARRLFRSSLNIN 317 (476)
Q Consensus 301 g~~~~A~~~~~~al~~~ 317 (476)
|++..|++.|..+.+..
T Consensus 319 ~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHF 335 (517)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887763
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=1.7e-14 Score=125.45 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=202.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhC
Q 011845 16 ALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG-HIAAWHGWAVLELRQG 94 (476)
Q Consensus 16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~ 94 (476)
.-|..-+..|+|.+|.....+.-+.. +.....+..-+.+..++|+++.|-.++.++-+..++ ........+.+...+|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34555566788888888888876554 444445555667778888888888888888776433 3455667888888888
Q ss_pred CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH---HHHHHH--HHHHhcc---HHH
Q 011845 95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS---WIAWSQ--MEMQQEN---NLA 166 (476)
Q Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~--~~~~~~~---~~~ 166 (476)
+++.|...+.++++..|.++.+......+|...|++.+...++.++.+..--+..- +-..+. ++.+.++ .+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888888888888888877665322211 111111 1111222 222
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246 (476)
Q Consensus 167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 246 (476)
-..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ....++ ...-+++..=++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence 12233333333334567777788888888888888888888887665433 222222 235567777788888888888
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 247 PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
|+++..+..+|.++.+.+.+.+|..+|+.+++..|+... +..+|.++.+.|+..+|.+.+++++..
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~----~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD----YAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh----HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888777543 455688888888888888888887743
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.74 E-value=7.1e-16 Score=134.55 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HH
Q 011845 78 GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SW 151 (476)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~ 151 (476)
..+..++.+|..+...|++++|+..+++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445555666666666666666666666665555543 34555566666666666666666666665555544 35
Q ss_pred HHHHHHHHHh--------ccHHHHHHHHHHHHHcCCCc
Q 011845 152 IAWSQMEMQQ--------ENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 152 ~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~ 181 (476)
+.+|.++... |++++|+..|++++..+|++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 5555555443 34444444444444444443
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.74 E-value=1.5e-15 Score=149.27 Aligned_cols=291 Identities=7% Similarity=-0.012 Sum_probs=203.8
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845 41 TQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120 (476)
Q Consensus 41 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (476)
..|.+..+|..++..+...+++++|+.+++..+..+|+...+++.+|.++.+.+++.++..+ .++...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~---------- 93 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF---------- 93 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc----------
Confidence 34667777777777777778888888888877777787777777777777777776555444 333332
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (476)
....++ .+++++...+...+++..+++.+|.+|.++|+.++|...|+++++.+|+++.+..++|..|... +.++
T Consensus 94 ----~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 94 ----SQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ----ccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 223344 4445555555556667778888888888888888888888888888888888888888888877 8888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccC
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSID 280 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 280 (476)
|+.++.+++.. +...+++..+..++.+.+..+|++.+.+..+-......-.+..+
T Consensus 168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~----------- 222 (906)
T PRK14720 168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL----------- 222 (906)
T ss_pred HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-----------
Confidence 88888877665 45566777888888888888887766655443322221112211
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhh
Q 011845 281 STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASW 360 (476)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (476)
..++.-+-.+|...+++++++.+++.+++.+|.+..++..++.+|. +.|.. ...++.+++.. .
T Consensus 223 ------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s--------~ 285 (906)
T PRK14720 223 ------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS--------D 285 (906)
T ss_pred ------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh--------c
Confidence 2234444578889999999999999999999999999999999998 33333 34444444311 1
Q ss_pred hhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845 361 VMGFMDIIDPALDRIKQLLNLEKSSYKEPSA 391 (476)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 391 (476)
+-.....+..++..|++-+..+|++.--+..
T Consensus 286 l~~~~~~~~~~i~~fek~i~f~~G~yv~H~~ 316 (906)
T PRK14720 286 IGNNRKPVKDCIADFEKNIVFDTGNFVYHRT 316 (906)
T ss_pred cccCCccHHHHHHHHHHHeeecCCCEEEEcC
Confidence 1112245688999999999999998877763
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=1.3e-15 Score=132.97 Aligned_cols=108 Identities=14% Similarity=-0.014 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH---HH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY---IY 117 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~ 117 (476)
..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..++++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455566666666666666666666666666665543 35566666666666666666666666666665443 45
Q ss_pred HHHHHHHHHh--------ccHHHHHHHHHHHHhcCCCchhHH
Q 011845 118 QTLALLEAKA--------NRYEQARNLFRQATKCNPKSCASW 151 (476)
Q Consensus 118 ~~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~ 151 (476)
+.+|.++... |++++|+..|++++..+|++...+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 5566666554 556666666666666666654443
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.73 E-value=3.3e-14 Score=134.21 Aligned_cols=304 Identities=13% Similarity=0.056 Sum_probs=229.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
..++....+.++...|++++|++.++.....-.+........|.++.++|++++|...|...+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34677778899999999999999999988877888888889999999999999999999999999999999999888887
Q ss_pred HHh-----ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 011845 125 AKA-----NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL-AARQLFERAVQASPKNRFAWHVWGIFEANMGFI 198 (476)
Q Consensus 125 ~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 198 (476)
... .+.+.-..+|++.....|....... +...+..-..+. .+..++...+.. .-|.++..+-.+|....+.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHH
Confidence 333 2567788899998888886543322 212222222333 333444444433 3445555555555544443
Q ss_pred HHHHHHHHHHHhc---------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845 199 DKGKKLLKIGHAV---------------NPRDP--VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW 261 (476)
Q Consensus 199 ~~A~~~~~~~~~~---------------~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (476)
.-...++...... .|... .+++.+++.|...|++++|+.+.+++++..|..++.+...|.++.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3333333333211 11222 356888999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc-----HHHH--HHHHHHHH
Q 011845 262 KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS--QS-----YITW--MTWAQLEE 332 (476)
Q Consensus 262 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~-----~~~~--~~l~~~~~ 332 (476)
..|++.+|.+.++.+..+++.+.. +-...+..+.+.|+.++|.+.+......+. .. .-.| ...|.++.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRy---iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRY---INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHH---HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998844 355668899999999999999987765442 11 1134 56789999
Q ss_pred HcCChHHHHHHHHHHHhhhhhh
Q 011845 333 DQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 333 ~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
+.|++..|...+..+.....++
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888765544
No 93
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=2.8e-13 Score=124.34 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPKN----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR----------- 214 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------- 214 (476)
.|..+|.+|...|+.+.|..+|+++.+..-.. ..+|...|.......+++.|+.+++++......
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 56677777777777777777777777654221 456777777777777777777777776543211
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC--CChh
Q 011845 215 -------DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS--TTES 285 (476)
Q Consensus 215 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~ 285 (476)
+..+|..++.+....|-++....+|++.+.+.--.|.+..+.|..+....-++++.+.|++.+.+.+ ...+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1235667777777778888888888888877777778888888888888888888888888888754 3333
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY--ITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.+..|......-...-..+.|...|+++++..|... .++..++.+..+.|-...|+.+|+++..
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 444444434444445578899999999999877432 4677788888888988888888888765
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.70 E-value=6.9e-13 Score=121.84 Aligned_cols=338 Identities=18% Similarity=0.268 Sum_probs=268.8
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-----NPYIWQCWAVLENKLGNIGKARELFDASTVADK 77 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 77 (476)
+|+.+|++...|.....++ .|+..+-+..|..+++.-.|. -...|..+|..|...|+.+.|..+|+++...+-
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 4688999999999876655 688999999999999755443 246899999999999999999999999997653
Q ss_pred Cc----HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC------------------CcHHHHHHHHHHHHHhccHHHHHH
Q 011845 78 GH----IAAWHGWAVLELRQGNIKKARQLLAKGLKFCG------------------GNEYIYQTLALLEAKANRYEQARN 135 (476)
Q Consensus 78 ~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~ 135 (476)
.. ..+|...|..-++..+++.|+++++++...-. .+..+|..++.+....|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 32 57899999999999999999999999976521 123578889999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHh
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS--PKNRFAWHVWGIFEA---NMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~ 210 (476)
.|++++.+---.|....+.|..+....-++++.+.|++.+.+. |.-.++|..+..-+. ...+.+.|..+|+++++
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999999988889999999999999999999999999999886 455677765544333 23478999999999999
Q ss_pred cCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCCh
Q 011845 211 VNPRD--PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 211 ~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
.+|.. ..++..++.+....|-...|+.+|+++...-+.. -.+.+-.+|.. .=-......+|+++++.-|+..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 98843 2356778888888899999999999987654321 12222222221 1124567789999999988775
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CC-cHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845 285 SAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-SQ-SYITWMTWAQLEEDQGNSVRAEEIRN 345 (476)
Q Consensus 285 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 345 (476)
. ..+....+....+.|..+.|..+|.-+-++. |. +++.|..+-.+..+.|+-+.-.++++
T Consensus 657 ~-r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 657 A-REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred H-HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5 4456688999999999999999999988875 43 45889999999999999665555543
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=1e-12 Score=114.45 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=191.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHhccH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG-NEYIYQTLALLEAKANRY 130 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~ 130 (476)
-|..-+..|+|.+|.....+.-+..+....++..-+.+..+.|+++.+-.++.++-+..++ ...+....+.+....|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 3455556788888888888877766666667777777888888888888888888877443 345667778888888888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-H--HHHHHHH--HHHHcCCHHHH---H
Q 011845 131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-F--AWHVWGI--FEANMGFIDKG---K 202 (476)
Q Consensus 131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~--~~~~l~~--~~~~~~~~~~A---~ 202 (476)
+.|.....++++..|.++.+.....++|...|++.....++.+.-+..--+. + -+...+. ++.+.++-+.+ .
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 8888888888888888888888888888888888888887777665432221 1 1111111 11111221111 2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
..++..-..-..++.+...++.-+...|+.++|.++.+.+++..-+. .....++ ...-+++..=++..++.++..|+
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHhCCC
Confidence 23333322333456677777777777777777877777777765432 2111111 22456777777777777777777
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845 283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYF 348 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 348 (476)
++. ++..+|.++.+.+.+.+|..+|+.+++..|+. ..+..++.++.+.|+..+|.++++..+
T Consensus 327 ~p~---L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPL---LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred Chh---HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 753 46666777777777777777777777766653 446677777777777777777666554
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.6e-14 Score=116.57 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=149.5
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
++....+-....+....|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+..++.....
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 33344455666777788888888888888888788888888888888888888888888888888888888888887777
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST---AN 233 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~ 233 (476)
+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++..|. ..
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888877764 45
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845 234 LARKLFRRASEIDPRHQPVWIAWGWME 260 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (476)
-|.++|.++++++|.+...++.+-.+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 688888888888887767666654443
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=1.6e-15 Score=119.87 Aligned_cols=122 Identities=11% Similarity=-0.054 Sum_probs=65.1
Q ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
.+|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3445555554443 3344555555555555555555555555555555555555555555555555555555555555
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF 191 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 191 (476)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555555555555555555555555555555444443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.1e-13 Score=115.44 Aligned_cols=361 Identities=11% Similarity=-0.009 Sum_probs=228.8
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA 99 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 99 (476)
.+++..+|.+|++++..-.+.. |.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 3467788999999999888887 778888999999999999999999999999999999888888899999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845 100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
+.+...+.....-.......-+.+.+..+++..+..+.++.-. .+..+.....|.+.++.|+++.|++-|+.+++...
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 9988877653222223444445555566666666655554311 14556667777777777777777777777777776
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC----------------C---------HHHHHHHHHHHHHcC
Q 011845 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV----NPR----------------D---------PVLLQSLALLEYKYS 230 (476)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~----------------~---------~~~~~~la~~~~~~~ 230 (476)
-++-.-++++.++++.|+++.|+++..+.++. .|. + ..+++..+.++++.+
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 66667777777777777777777766655542 221 1 123445566667777
Q ss_pred CHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 011845 231 TANLARKLFRRASEIDP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARR 308 (476)
Q Consensus 231 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 308 (476)
+++.|.+.+..+--... -+|..+.+++..-. .+++.+...-++-.+.++|-. .+.+.++-.+|++..-|+-|..
T Consensus 256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP---~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP---PETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC---hHHHHHHHHHHhhhHHHhHHHH
Confidence 77776665543322111 13445555543322 355555666666666666643 2234555555666555555554
Q ss_pred HHHH------------------HHhhCCCcHH-HH---------------HHHHHHHHHc-CC----hHHHHHHHHHHHh
Q 011845 309 LFRS------------------SLNINSQSYI-TW---------------MTWAQLEEDQ-GN----SVRAEEIRNLYFQ 349 (476)
Q Consensus 309 ~~~~------------------al~~~p~~~~-~~---------------~~l~~~~~~~-g~----~~~A~~~~~~~~~ 349 (476)
.+-+ ++-..|.+++ +. ..-+.+.... .+ ...|++-|+..++
T Consensus 332 vLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE 411 (459)
T KOG4340|consen 332 VLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLE 411 (459)
T ss_pred HHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4321 1111222221 11 1111111111 11 2233444555666
Q ss_pred hhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 350 QRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 350 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
....+....+|++-...++.-+.+.|+...+.-.++..
T Consensus 412 ~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 412 KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 66667777888888889999999999888876655443
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=2.1e-15 Score=119.26 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=46.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 233 (476)
+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 234 LARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
+|+..|++++...|+++..+..++.
T Consensus 110 eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 110 LAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4444444444444444444444333
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.68 E-value=2.2e-14 Score=119.69 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=100.7
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE-YKYST--ANLARK 237 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 237 (476)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|++++...|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566677888888888888888888888888888888888888888888888888888888888764 56666 478888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
.++++++.+|+++.+++.+|..+...|++++|+.+|+++++..|.+...
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 8888888888888888888888888888888888888888887766554
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.66 E-value=1.2e-12 Score=137.28 Aligned_cols=374 Identities=14% Similarity=0.014 Sum_probs=269.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCcCcHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV-ADKGHIAAWHGWAVLE 90 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~ 90 (476)
..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 44556677788899999998877765211 11223344556777788998887777765421 1123344556778888
Q ss_pred HHhCCHHHHHHHHHHhhccCCC---------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHH
Q 011845 91 LRQGNIKKARQLLAKGLKFCGG---------NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQ 156 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~ 156 (476)
...|++++|...+.++....+. ...+...++.++...|++++|...+++++...+... .+...+|.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 8999999999999888654221 123455678888899999999999999998654332 24567888
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--------DPVLLQSL 222 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l 222 (476)
++...|++++|...+++++...... ...+..++.++...|++++|...+++++..... ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 8999999999999999998753321 245677899999999999999999998875221 12345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--H-HHH-HHH
Q 011845 223 ALLEYKYSTANLARKLFRRASEIDPR-----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--A-RCL-QAW 293 (476)
Q Consensus 223 a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~-~~~-~~l 293 (476)
|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+..... . ... ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 88999999999999999998775321 23456678999999999999999999997653322110 0 000 111
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---------hhcchhhh
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQSY----ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---------EVVDDASW 360 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~ 360 (476)
...+...|+.+.|..++.......+... ..+..++.++...|++++|...++.+..... ......+.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3445568999999999887665332222 2256789999999999999999999887432 23345677
Q ss_pred hhhhcccchHHHHHHHHHhccccCCCC
Q 011845 361 VMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
++...|+.++|...+.+++++......
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 888999999999999999998765544
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.66 E-value=1.3e-13 Score=135.86 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=148.2
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
...+|.+..++..++..+...+++++|+.+++..++.. |+....++.+|.++.+.+++.++..+ .++...+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~--- 97 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL--- 97 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc---
Confidence 35689999999999999999999999999999998887 99999999999999999997776665 4444433332
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
++ .+++.+-..+...+.+..+++.+|.||.++|+.++|...|+++++.+|+++.++.++|..|... +
T Consensus 98 -----------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 98 -----------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -----------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h
Confidence 22 2233333333334444455555555555555555555555555555555555555555555555 5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--------------------HHHHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL--------------------LQSLA 223 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------------~~~la 223 (476)
.++|+.++.+++.. +...+++..+..++.+.+..+|++... +.-+-
T Consensus 165 L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 165 KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 55555555555543 333344555555555555555544332 23333
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEW 261 (476)
Q Consensus 224 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (476)
..|...+++++++.+++.+++.+|.+..+...++.+|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 55666777788888888888888887777777777776
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.66 E-value=9e-15 Score=128.94 Aligned_cols=259 Identities=12% Similarity=-0.003 Sum_probs=188.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK 98 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 98 (476)
+.++-.|+|..++..++ .....++........+.+++..+|+++..+..... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 45666899999997777 33333233455677788899999998876655433 223344566677777766567777
Q ss_pred HHHHHHHhhccCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 99 ARQLLAKGLKFCG--GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 99 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776664432 34556677778888889999998888654 5677777788899999999999999999888
Q ss_pred cCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 011845 177 ASPKNRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI 254 (476)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 254 (476)
.+.+..-+....+.+....| ++.+|.-+|++.....+.++.++..++.++..+|++++|...+++++..+|+++.++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 87777655555555665555 5889999999988888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-hHHHHHHHHHHccCCCChhH
Q 011845 255 AWGWMEWKEGNL-DTARELYERALSIDSTTESA 286 (476)
Q Consensus 255 ~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~ 286 (476)
+++.+....|+. +.+.+++.+....+|+++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 999888888888 55667777777788888654
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.4e-13 Score=110.98 Aligned_cols=200 Identities=12% Similarity=0.037 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHhhccCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845 24 QSKVAEARAIYAKGSQATQ-----GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK 98 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 98 (476)
..+.++-++++..++...+ ++--.++.....+....|+.+-|..++++.....|.+.......|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3455666666666553221 22233444556666778888888888888887778888888888888888888888
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845 99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
|+++|+..++.+|.+..++.....+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845 179 PKNRFAWHVWGIFEANMG---FIDKGKKLLKIGHAVNPRDPVLLQSLA 223 (476)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la 223 (476)
|.++..+..++.+++-.| ++.-|.++|.++++++|.+...++.+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 888888888888877766 466788888888888887766655543
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.65 E-value=3.9e-14 Score=116.82 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=84.1
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845 101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
..+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++..|+..++++....|+
T Consensus 54 ~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 54 AALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 3333333444444444 444444444554444444444444444444444444444455555555555555555555555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845 181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME 260 (476)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (476)
+.++|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555554444444444445555555
Q ss_pred HHcCChhHHHHH
Q 011845 261 WKEGNLDTAREL 272 (476)
Q Consensus 261 ~~~g~~~~A~~~ 272 (476)
...|++.+|..+
T Consensus 213 ~~~g~~~~A~~i 224 (257)
T COG5010 213 GLQGDFREAEDI 224 (257)
T ss_pred hhcCChHHHHhh
Confidence 555555544443
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.65 E-value=4.8e-14 Score=116.27 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..++..+|......|++..|+..+.++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666667778888888 8888889999999999999988888888888888888999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 011845 142 KCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS 221 (476)
Q Consensus 142 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 221 (476)
...|++..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 011845 222 LALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 222 la~~~~~~~~~~~A~~~~~~~~ 243 (476)
++.+....|++.+|..+..+-+
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 9999999999998887765543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=3.5e-14 Score=118.45 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=86.5
Q ss_pred cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH-HHhcc--HHHHHH
Q 011845 59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE-AKANR--YEQARN 135 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 135 (476)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455667777777777777777777777777777777777777777777777777777777777653 45555 467777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777777777777777777777777777777777777777766654
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.63 E-value=2.5e-14 Score=133.23 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
.....++..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 33444555555555555555555543 3344445555555555555555555554 3334444545554444
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF 171 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 171 (476)
...-|++|.++.+.. +..+...+|......+++.++..+++..++++|-....|+.+|.+..+.++++.|...|
T Consensus 469 d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 444444444443322 22233444444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 172 ERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 172 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
..++..+|++..+|++++..|...++-.+|...++++++.+-++..+|.+.-.+....|.+++|++.+.+.+.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555443
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.63 E-value=6.2e-12 Score=132.09 Aligned_cols=339 Identities=14% Similarity=0.044 Sum_probs=247.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---------cHHHHH
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG---------HIAAWH 84 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~ 84 (476)
....+..+...|++..+..++..+-......++......+.++...|++++|...+..+....+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44456667778888887777766521111234556677788889999999999999987653221 123444
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcH-----HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNE-----YIYQTLALLEAKANRYEQARNLFRQATKCNPKS------CASWIA 153 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 153 (476)
.++.++...|++++|...+++++...+... .+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 678888899999999999999987544322 355778889999999999999999998764321 235667
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPK--------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR-----DPVLLQ 220 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~ 220 (476)
++.++...|++++|...+++++..... ....+..++.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999998875221 2234567788899999999999999998775321 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHH----HHHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHH
Q 011845 221 SLALLEYKYSTANLARKLFRRASEIDPRH---QPVWI----AWGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQA 292 (476)
Q Consensus 221 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~ 292 (476)
.++.++...|+++.|...+.++....+.. ..... .....+...|+.+.|..++.......+.... ....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 78899999999999999999987653321 11111 1224445689999999998876653322211 1223456
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINS------QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
++.++...|++++|...+++++.... ....++..++.++...|+.++|...+.+++....
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 79999999999999999999987631 2235788899999999999999999999987543
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=2.4e-13 Score=126.83 Aligned_cols=217 Identities=17% Similarity=0.211 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 127 (476)
....++..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|+++..|..+|.+....
T Consensus 400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 3345566666666666666666553 3445555666666666666666666665 445555666666555555
Q ss_pred ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 128 NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 128 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
.-|++|.++.+.. +..+...+|......++++++.++++..++++|-....|+.+|.+..+.+++..|.+.|.+
T Consensus 471 s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 471 SLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 4444454444432 2224444555555556666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 208 GHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 208 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
++...|++...|++++..|...++-.+|...++++++-+-.+..+|-+...+....|.+++|++.|.+.+.+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666555566666666666666666666666665554
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.59 E-value=1.1e-13 Score=122.12 Aligned_cols=257 Identities=14% Similarity=0.027 Sum_probs=165.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 54 VLENKLGNIGKARELFDASTVADK-GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
+-++-.|+|..++..++ ....++ ........+.+++..+|++...+.-+... .+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 44566788888887666 223333 23456667788888888877665544332 23344455666666655455666
Q ss_pred HHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 133 ARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 133 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
++..++..+.... .++......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655443321 23445556667777778888887777653 4566667777788888888888888888777
Q ss_pred cCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845 211 VNPRDPVLLQSLALLEYKYS--TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 288 (476)
.+.+...+....+++....| .+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|.++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d--- 236 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD--- 236 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH---
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH---
Confidence 77665555555555555555 4777888888877777777777778888888888888888888888877777744
Q ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCCcHH
Q 011845 289 CLQAWGVLEQRVGNL-SAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 322 (476)
++.+++.+....|+. +.+.+++.+....+|+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 466777777777777 5566677777777777664
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=6.3e-13 Score=130.30 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189 (476)
Q Consensus 110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 189 (476)
.|.++.++..||.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247 (476)
Q Consensus 190 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 247 (476)
.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 5555555555555555555555555555555555555555555555555555555443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=3e-13 Score=132.53 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
+++.-........|++++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33344444455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
.|+++..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865543
No 114
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.56 E-value=5.6e-14 Score=122.32 Aligned_cols=287 Identities=12% Similarity=0.061 Sum_probs=163.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIYQTLAL 122 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~ 122 (476)
|.-++++|++...+.+|+.+++...++. .+|..+|.+|...++|++|+++-..-+.+ .-......-++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3444555555555555555555444432 23334555555555555555543222111 1111223344555
Q ss_pred HHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQMEMQQEN--------------------NLAARQLFERAVQ 176 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a~~ 176 (476)
++.-.|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554443321 113355555555554442 2334444443333
Q ss_pred cCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 177 ASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR------DPVLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 177 ~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
+... ...++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 3211 1244566777777788888888776665554322 134677888888888888888888887654
Q ss_pred c----CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 245 I----DP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES---AARCLQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 245 ~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
+ .. ......+.+|..|.-..++++|+.++.+-+.+...-.+ -.+.+..+|..+...|..++|+.+.++.++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3 22 23456677888888888888888888877665322111 134566778888888888888888877765
Q ss_pred hC-----CC-cHHHHHHHHHHHHHcCChHH
Q 011845 316 IN-----SQ-SYITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 316 ~~-----p~-~~~~~~~l~~~~~~~g~~~~ 339 (476)
.. +. ...+..++..+....|..+.
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 42 22 22456677777777776443
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=9.5e-13 Score=110.03 Aligned_cols=286 Identities=13% Similarity=0.002 Sum_probs=225.6
Q ss_pred HHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845 56 ENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135 (476)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 135 (476)
+.+..+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD 215 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 215 (476)
+...+.....-.......-+.+.+..+++..+..+.++.- ..++.....+.|.+.++.|+++.|++-|+.+++...-.
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9887755422223344455666777888888877766532 12456788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC-------------------------HHHHHHHHHHHHHcCCh
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEI----DPRH-------------------------QPVWIAWGWMEWKEGNL 266 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~g~~ 266 (476)
+.+-++++.++++.+++..|+++..+.++. .|+. ..+++..+-++++.|++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 999999999999999999999988777654 3321 13455567788899999
Q ss_pred hHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845 267 DTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN 345 (476)
Q Consensus 267 ~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 345 (476)
+.|.+.+..+--......+ +..+.+++.. -..+++.+...-++-.+.++|-..+++.++..++.+..-++-|..++.
T Consensus 258 eAA~eaLtDmPPRaE~elD-PvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELD-PVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHhhcCCCcccccCC-chhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 9998776544322111111 2234454433 335678888888888899999888999999999998888888876643
No 116
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.56 E-value=9.6e-14 Score=120.90 Aligned_cols=270 Identities=14% Similarity=0.048 Sum_probs=203.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchhHHHHH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNE----YIYQTLALLEAKANRYEQARNLFRQATKC------NPKSCASWIAW 154 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l 154 (476)
.-|.-+.+.|+....+.+|+.+++...++. .+|..+|..|..+++|++|+++-..-+.+ .-....+--++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 346677899999999999999999987664 46788999999999999999875543322 12234456678
Q ss_pred HHHHHHhccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 011845 155 SQMEMQQENNLAARQLFERAVQASP------KNRFAWHVWGIFEANMGF--------------------IDKGKKLLKIG 208 (476)
Q Consensus 155 a~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~ 208 (476)
|..+...|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776532 235789999999987764 23344444443
Q ss_pred HhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 209 HAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 209 ~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
+++.... ..++-++|..|+-.|+|+.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 3332211 2356778888999999999999888776664332 257889999999999999999999987
Q ss_pred Hcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 277 LSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS------QSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 277 ~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
+.+ ...... ....+.+|..|.-..++++|+.++++-+.+.. ....+.+.++..+...|..++|....+.
T Consensus 262 l~LAielg~r~vE-AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 262 LNLAIELGNRTVE-AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhcchhHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 654 222222 44567889999999999999999998877632 2345788999999999999999998888
Q ss_pred HHhhhhhhc
Q 011845 347 YFQQRTEVV 355 (476)
Q Consensus 347 ~~~~~~~~~ 355 (476)
.++...++.
T Consensus 341 hl~~s~ev~ 349 (639)
T KOG1130|consen 341 HLRSSLEVN 349 (639)
T ss_pred HHHHHHHhC
Confidence 887555444
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=3.4e-13 Score=106.56 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 249 (476)
.|++++..+|++......++..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
+..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555555555555555443
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=3.8e-13 Score=106.26 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=62.6
Q ss_pred HHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845 68 LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 68 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 147 (476)
.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+..++.+|.++...|++++|+..|+++++.+|++.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 55555555555555555555555555555555443
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=1.6e-11 Score=110.08 Aligned_cols=153 Identities=16% Similarity=0.046 Sum_probs=114.7
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+..+|.+.+++++..+|..+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (476)
.+.+.|++.+|+..++..+..+|+++..|..++..|..+|+..++.. ..+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777777777776554443 3455556677777777
Q ss_pred HHHHHHHccC
Q 011845 271 ELYERALSID 280 (476)
Q Consensus 271 ~~~~~a~~~~ 280 (476)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777777664
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.48 E-value=2.6e-11 Score=108.83 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=130.4
Q ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845 145 PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224 (476)
Q Consensus 145 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 224 (476)
|....+++..+..++..|++++|...+...+...|+|+..+...+.++...++.++|.+.+++++...|..+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777888888888888999999999988888889888888888888999999999999999999888888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845 225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS 304 (476)
Q Consensus 225 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (476)
.+.+.|++.+|+..++..+..+|+++..|..++..|...|+..+|.. ..+..+...|+++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~~~~G~~~ 442 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGYALAGRLE 442 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHHHhCCCHH
Confidence 99999999999999988888888888899999988888888766643 2366677788888
Q ss_pred HHHHHHHHHHhhC
Q 011845 305 AARRLFRSSLNIN 317 (476)
Q Consensus 305 ~A~~~~~~al~~~ 317 (476)
+|+..+..+.+..
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887765
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=2.6e-12 Score=108.22 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
.+-+-.-|.-+++.++|.+|+..|.++++++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
.+|++++|++.|+++++++|++...+..|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988888888877777666655
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.42 E-value=1.5e-10 Score=115.34 Aligned_cols=238 Identities=21% Similarity=0.328 Sum_probs=162.7
Q ss_pred HHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc-CCCc----HHHHHHHHHHHHHhccHHHHHHHHH
Q 011845 64 KARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF-CGGN----EYIYQTLALLEAKANRYEQARNLFR 138 (476)
Q Consensus 64 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 138 (476)
+..+-|++.+..+|+....|..+...+...++.++|.++.++++.. ++.. ..+|..+-.+...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3455666667777777777777777777777777777777777753 2221 2345555555555566666777777
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH
Q 011845 139 QATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DP 216 (476)
Q Consensus 139 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 216 (476)
+|.+.. +...++..|..+|...+++++|.++|+..++...+...+|..++..+.++.+-+.|..++.++++.-|. +.
T Consensus 1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 776653 234567777777777777777777777777777767777777777777777777777777777777776 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL 296 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~ 296 (476)
......|++.++.|+.+.+..+|+..+..+|...+.|..+...-.+.|+.+.+..+|++++.+.-....+..++..+-..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777654433333333333333
Q ss_pred HHHhCC
Q 011845 297 EQRVGN 302 (476)
Q Consensus 297 ~~~~g~ 302 (476)
....|+
T Consensus 1681 Ek~~Gd 1686 (1710)
T KOG1070|consen 1681 EKSHGD 1686 (1710)
T ss_pred HHhcCc
Confidence 333344
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.5e-12 Score=107.45 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
++-+-.-|.-+++.++|.+|+..|.++++++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455668888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL 165 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 165 (476)
.+|++.+|++.|++++.++|++...+..|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888888877777766655
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1.2e-11 Score=95.43 Aligned_cols=102 Identities=10% Similarity=-0.097 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 179 PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
++..+..+.+|..+...|++++|...|+-+...+|.+...|++||.++...|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCChhHHHHHHHHHHccC
Q 011845 259 MEWKEGNLDTARELYERALSID 280 (476)
Q Consensus 259 ~~~~~g~~~~A~~~~~~a~~~~ 280 (476)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555554443
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1.3e-11 Score=95.32 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=51.6
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
++..+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++.+|+..|.+++.++|+++..+..+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhccHHHHHHHHHHHHHcC
Q 011845 157 MEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555544443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.39 E-value=3.7e-10 Score=112.73 Aligned_cols=216 Identities=19% Similarity=0.331 Sum_probs=194.2
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCcCc----HHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV-ADKGH----IAAWHGWAVLELRQGNIKKARQLL 103 (476)
Q Consensus 29 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~----~~~~~~la~~~~~~~~~~~A~~~~ 103 (476)
+..+-|++.+... |++...|..+...+.+.++.++|++++++++. +++.. ...|..+-.+...-|.-+...+.|
T Consensus 1442 esaeDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3456677777777 89999999999999999999999999999985 44433 357777777777888888999999
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--c
Q 011845 104 AKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK--N 181 (476)
Q Consensus 104 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~ 181 (476)
+++.+.+ +...++..|..+|...+.+++|.++|+.+++.......+|..++..++++++-+.|..++.+|++.-|. +
T Consensus 1521 eRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 9999876 345688999999999999999999999999999988999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 246 (476)
.......+.+.++.|+.+.+..+|+..+...|...++|..+...-.+.|+.+.++.+|++++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 78888999999999999999999999999999999999999999999999999999999998764
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.33 E-value=9.2e-08 Score=87.19 Aligned_cols=375 Identities=13% Similarity=0.145 Sum_probs=226.5
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
-++.+|.|..+|+.+.+-+-.+ -+++....|++.+... |..+.+|.......+...+|+....+|.+++..- -+.+.
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDL 88 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDL 88 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhH
Confidence 4678999999999998887766 9999999999999998 9999999999999999999999999999997432 22344
Q ss_pred HHHHHH-HHHHhCCHHHHHHHHHHh----h---ccCCCcHHHHHHHHHHHH---------HhccHHHHHHHHHHHHhcCC
Q 011845 83 WHGWAV-LELRQGNIKKARQLLAKG----L---KFCGGNEYIYQTLALLEA---------KANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 83 ~~~la~-~~~~~~~~~~A~~~~~~~----~---~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p 145 (476)
|..... +-...|+...+....-++ + -.++.+..+|...+..+. ...+.+.....|++++..--
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 432211 111222222211111111 1 122233333333222211 11233333333333333211
Q ss_pred Cc------------------------------------------------------------------hhHHHHHHHHHH
Q 011845 146 KS------------------------------------------------------------------CASWIAWSQMEM 159 (476)
Q Consensus 146 ~~------------------------------------------------------------------~~~~~~la~~~~ 159 (476)
.+ .+.|.++.....
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 11 112322222221
Q ss_pred Hhc------cH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCC-CH
Q 011845 160 QQE------NN--LAARQLFERAVQASPKNRFAWHVWGIFEANMGF--------------IDKGKKLLKIGHAVNPR-DP 216 (476)
Q Consensus 160 ~~~------~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~-~~ 216 (476)
..+ .. ..-.-.+++++..-+-.+++|+..+..+...++ .+++..+|++++...-. +.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 00 122234566666666677888887777766666 78888999988765432 33
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 217 VLLQSLALLEYKYS---TANLARKLFRRASEIDPRHQ-PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 217 ~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
..++.++..-...- +.+.....+++++.+...++ .+|..+...-.+..-...|..+|.++-+..... ..++..
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~---hhVfVa 405 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR---HHVFVA 405 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc---chhhHH
Confidence 44455554433332 36667777777776644333 355555555666666788888888887654333 122222
Q ss_pred HH-HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--h----hhhcchhhhhhhhc
Q 011845 293 WG-VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ--R----TEVVDDASWVMGFM 365 (476)
Q Consensus 293 l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~~~~~~~~~ 365 (476)
-| .-|...++..-|..+|+-.+...++++..-..+...+...++-..|..+|++++.. . .+++...-..-...
T Consensus 406 ~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 406 AALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 22 23456788888888888888888888888888888888888888888888888775 1 13444444445566
Q ss_pred ccchHHHHHHHHHhcccc
Q 011845 366 DIIDPALDRIKQLLNLEK 383 (476)
Q Consensus 366 g~~~~A~~~~~~al~~~p 383 (476)
|++...++.=++-....|
T Consensus 486 GdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 777777776666555555
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.33 E-value=3.6e-10 Score=95.28 Aligned_cols=182 Identities=15% Similarity=-0.010 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWH 84 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 84 (476)
+..++..|..++..|+|.+|+..|++++... |.+ +.+.+.+|.+++..|+++.|+..+++.+...|+++ .+++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 3445555555555555555555555555444 222 34455555555555555555555555555555442 3444
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN 164 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 164 (476)
.+|.+++....-. + ......+...+|+..|+..+...|++..+-.
T Consensus 84 ~~g~~~~~~~~~~-----~------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~------------ 128 (203)
T PF13525_consen 84 MLGLSYYKQIPGI-----L------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE------------ 128 (203)
T ss_dssp HHHHHHHHHHHHH-----H-------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH------------
T ss_pred HHHHHHHHhCccc-----h------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH------------
Confidence 4444443331000 0 1112233445667777777777776543211
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHH
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTAN 233 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~ 233 (476)
|...+..+-.. -..--+.+|..|.+.|.+..|+..++.+++..|+.+ .++..++..+...|..+
T Consensus 129 --A~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 129 --AKKRLAELRNR---LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp --HHHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred --HHHHHHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 11000000000 001123345555555666666666666665555543 24555555555655555
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=6.2e-11 Score=108.81 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
|..++..|++++|+.+|.+++..+|.+..+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCchhHHHH
Q 011845 133 ARNLFRQATKCNPKSCASWIA 153 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~ 153 (476)
|+..|++++.++|++..+...
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 444444444444444443333
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.31 E-value=1.1e-09 Score=94.51 Aligned_cols=182 Identities=10% Similarity=-0.007 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---HHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS---WIAWSQMEMQQENNLAARQLFERAVQASPKN---RFAWH 186 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 186 (476)
++..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++..|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45556667777777777777777777777777766443 3667777777777777777777777776655 34556
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 187 VWGIFEANMGF------------------IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 187 ~l~~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
.+|.++...+. ..+|+..|++.++..|++..+- +|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHHH---
Confidence 66655433321 1234445555555555442211 111100000000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845 249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311 (476)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 311 (476)
-..--+.+|..|.+.|.|..|+.-++.+++..|+.+...+.+..++..|..+|..++|..+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 001112456666666666666666666666666666666666666666666666666665554
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.30 E-value=4.5e-10 Score=94.72 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---HHHHHH
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKN---RFAWHV 187 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~ 187 (476)
+..++..|..+...|++.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++..|++ +.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4455666666666666666666666666665544 3355666666666666666666666666666654 244555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---------------
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV--------------- 252 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------- 252 (476)
+|.++.....-. + ......+...+|+..|+..+...|++..+
T Consensus 85 ~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 85 LGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 555444331100 0 00111122345555555555555554311
Q ss_pred --HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845 253 --WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS 304 (476)
Q Consensus 253 --~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (476)
-+.+|..|.+.|.+..|+..++.+++..|+.......+..++..+.++|..+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 1224445555555555555555555555555554444555555555555544
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=7.2e-11 Score=108.35 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
+...|..++..|+|++|+..|++++... |.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 127 (476)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887776555
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.30 E-value=1.4e-09 Score=93.78 Aligned_cols=182 Identities=10% Similarity=-0.051 Sum_probs=122.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH---HHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA---WHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIY 117 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~ 117 (476)
.++..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456677788888888888888888888888888877544 4778888888888888888888888887765 4567
Q ss_pred HHHHHHHHHhc------------------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845 118 QTLALLEAKAN------------------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 118 ~~la~~~~~~g------------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
+.+|.++...+ ...+|+..|++.++..|++.-+ .+|...+..+-..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~-- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHH--
Confidence 77776653332 1346777777888877766321 1111111110000
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
-..--+..|..|.+.|.+..|+.-++.+++..|+. .+++..++..|...|..++|..+....
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01112356677777777877888888877777765 456777777788888877777665543
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5.2e-09 Score=99.46 Aligned_cols=225 Identities=14% Similarity=0.189 Sum_probs=140.3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH--------h---hcCcCcHHHHHHHHHH
Q 011845 21 LSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAS--------T---VADKGHIAAWHGWAVL 89 (476)
Q Consensus 21 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--------~---~~~p~~~~~~~~la~~ 89 (476)
|...|+.+.|.+..+-+ .+..+|-++|.+..+..+.+-|.-++-.+ + ..+|++ .-...|.+
T Consensus 738 yvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHH
Confidence 44568888887766654 34467888888888777776665554432 1 123332 22345566
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 169 (476)
....|..++|..+|.+.-. +-.+-.+|...|.|++|.++.+.--+++ -...|++.+..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHH
Confidence 6778888888888887754 3356677788888888877765432222 23467788888888888888888
Q ss_pred HHHHH----------HHcCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 011845 170 LFERA----------VQASPK----------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229 (476)
Q Consensus 170 ~~~~a----------~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 229 (476)
+|+++ +..+|. ++..|...|..+...|+.+.|+.+|..+-. |+.+..+.+-+
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQ 951 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeec
Confidence 88764 222332 345677778888888888888888876532 34444444555
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
|+.++|-.+-++ ..+..+.+.+|..|...|++.+|+..|.++
T Consensus 952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555444332 233344555555555555555555555544
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.8e-10 Score=88.76 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 293 (476)
..++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+.+|+.++...|+++....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445566666666666666666666666665554 34566666666666666666666666666666654333445566
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQSYIT 323 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 323 (476)
|.++...|++++|..++++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666666665543
No 136
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.25 E-value=7.8e-09 Score=89.31 Aligned_cols=234 Identities=9% Similarity=0.066 Sum_probs=156.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CcC--cHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVA----DKG--HIA 81 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~ 81 (476)
+.-.+..|.-++...++++|+..+.+.+..- .+. ...+-.+..+...+|.+++++..--..+.. +.. ..+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l-~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKL-SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888899999999988887654 221 223344556777888888776654433321 111 136
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch------hH
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC------AS 150 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~ 150 (476)
++.+++..+.+..++.+++.+-+-.+..-... ..+...++..+..++.++++++.|+.+++...++. .+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 67788888888888888888877776653222 35667788888888888888888888887754332 36
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 011845 151 WIAWSQMEMQQENNLAARQLFERAVQASPK----N------RFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------PR 214 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~ 214 (476)
+..+|.++....++++|.-+..++.++... + ..+.+.++..+..+|+...|.++.+++.++. +-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 778888888888888888888887765321 1 2345566677777777777777777765542 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 011845 215 DPVLLQSLALLEYKYSTANLARKLFRRASEI 245 (476)
Q Consensus 215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 245 (476)
.......+|.+|...|+.+.|..-|+++...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2334555666777777766666666666543
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=1.6e-10 Score=94.94 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327 (476)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 327 (476)
.....++.+|..+...|++++|+.+|+++++..|+.......+..+|.++...|++++|+.++++++...|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 45567888999999999999999999999888776554445788889999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCC
Q 011845 328 AQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSY 386 (476)
Q Consensus 328 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 386 (476)
+.++...|+...+...++.+.. .+++|++++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~-----------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA-----------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH-----------------HHHHHHHHHHHHHhhCchhH
Confidence 9999999887776655444432 46788889999999988863
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.24 E-value=7.7e-09 Score=89.36 Aligned_cols=306 Identities=11% Similarity=0.019 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhc----cCCC--cHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLK----FCGG--NEYIYQ 118 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~p~--~~~~~~ 118 (476)
-....|.-++...++++|+..+.+.+..-.+.. ..+-.+..+....|.+++++..--..+. .... .-+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777788899999999999886543322 3344566778888888887765433332 2211 235788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHH
Q 011845 119 TLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHV 187 (476)
Q Consensus 119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~ 187 (476)
+++..+.+..++.+++.+-+..+......+ .+...++..+...+.++++++.|+.++....++ ..++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 999999999999999999888887643332 467779999999999999999999999864432 367889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCHH
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAVNPR----D------PVLLQSLALLEYKYSTANLARKLFRRASEID------PRHQP 251 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~ 251 (476)
++.++....++++|.-+..++.++... + ..+++.++..+...|..-.|.++.+++.++. +-...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999999988875432 2 2367888999999999999999999987753 22334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh---HHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhCCCc---
Q 011845 252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTES---AARCLQAWGVLEQRVGNLSA-----ARRLFRSSLNINSQS--- 320 (476)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~p~~--- 320 (476)
....+|.+|...|+.+.|..-|+++......-.+ ...++...+.++....-..+ |+++-++++++...-
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K 327 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAK 327 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhh
Confidence 5667999999999999999999999876332211 13344555666655544444 888888887764322
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 321 ---YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 321 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
...+..++.+|...|..++-...+.++-+...+
T Consensus 328 ~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 328 LSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 246788999999998887776666665554443
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.23 E-value=1.6e-07 Score=82.42 Aligned_cols=224 Identities=23% Similarity=0.285 Sum_probs=121.2
Q ss_pred cCCHHHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845 59 LGNIGKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLK--FCGGNEYIYQTLALLEAKANRYEQAR 134 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~ 134 (476)
.+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555556666665555544 245555666666666666666666666665 45555566666666666666666666
Q ss_pred HHHHHHHhcCCCchhHHHHHHH-HHHHhccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 135 NLFRQATKCNPKSCASWIAWSQ-MEMQQENNLAARQLFERAVQASP---KNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 6666666655554333444444 55566666666666666655444 2233333444444455555555555555555
Q ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 211 VNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 211 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5555 34555555555555555555555555555555543344444444444444445555555555444443
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.1e-08 Score=80.57 Aligned_cols=256 Identities=11% Similarity=-0.027 Sum_probs=182.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK 98 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 98 (476)
+-++-.|+|..++..-++.... +........+.+.|..+|.+...+......- .....+...++.....-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 4555679999988877776433 3667777788888888888866554443322 2233455566666666666666
Q ss_pred HHHHHHHhhccC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 99 ARQLLAKGLKFC--GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 99 A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
-+.-+.+.+... ..+......-+.++...|++++|+...... .+.++...-..++.+..+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555554444332 223345566677888899999998887762 3456666667888888999999999999888
Q ss_pred cCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845 177 ASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV 252 (476)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 252 (476)
.+.+. +...++..+.. .+++..|.-+|+..-...|..+..+...+.+...+|++++|..+++.++..++++++.
T Consensus 166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 76554 33444444332 3568888889999888788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHH-HHHHHHHccCCCChhH
Q 011845 253 WIAWGWMEWKEGNLDTAR-ELYERALSIDSTTESA 286 (476)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~ 286 (476)
+.++..+-...|...++. +.+.+.....|+++.+
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999888888888776654 4556666667777544
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.21 E-value=4.5e-10 Score=92.05 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHH
Q 011845 232 ANLARKLFRRASEIDPRH--QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRL 309 (476)
Q Consensus 232 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 309 (476)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+......++.++|.++...|++++|+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444554444444433 456778888888888888888888888877766544445677888888888888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHH-------HcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccc
Q 011845 310 FRSSLNINSQSYITWMTWAQLEE-------DQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLE 382 (476)
Q Consensus 310 ~~~al~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 382 (476)
|++++.++|.....+..++.++. ..|+++.|... +++|+.+|++++..+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~------------------------~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW------------------------FDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH------------------------HHHHHHHHHHHHHhC
Confidence 88888888888888888888887 45555544433 445555666666666
Q ss_pred cCCC
Q 011845 383 KSSY 386 (476)
Q Consensus 383 p~~~ 386 (476)
|++.
T Consensus 151 p~~~ 154 (168)
T CHL00033 151 PGNY 154 (168)
T ss_pred cccH
Confidence 6543
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.21 E-value=4.8e-10 Score=86.34 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=8.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 011845 15 VALGKVLSKQSKVAEARAIYAKG 37 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~ 37 (476)
+.+|..+...|++++|+..|.++
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.9e-10 Score=94.54 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc---cHHHHHHHHH
Q 011845 96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE---NNLAARQLFE 172 (476)
Q Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~ 172 (476)
.+.-+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4555666777778888888888888888888888888888888888888888888888888776553 3467888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 011845 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP 216 (476)
Q Consensus 173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 216 (476)
+++..+|.+..+...++..++..|++.+|...++.++...|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88888888888888888888888888888888888888877653
No 144
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.19 E-value=3.1e-07 Score=80.58 Aligned_cols=224 Identities=21% Similarity=0.272 Sum_probs=185.1
Q ss_pred hCCHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHH
Q 011845 93 QGNIKKARQLLAKGLKFCGG--NEYIYQTLALLEAKANRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAAR 168 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~ 168 (476)
.+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 56777788888888877765 367888889999999999999999999987 67778888999999999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 169 QLFERAVQASPKNRFAWHVWGI-FEANMGFIDKGKKLLKIGHAVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999887776555555566 88999999999999999988666 3455666667777888899999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 245 IDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 245 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
..+. ....+..++..+...+++..|...+..++...|... ..+...+..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA---EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH---HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9888 688889999999999999999999999999888732 23455566666777899999999999988887
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.19 E-value=9.2e-07 Score=85.62 Aligned_cols=387 Identities=13% Similarity=0.001 Sum_probs=197.5
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
.++.+|+..-+....|..+.+.|+.++|..+++..-... +++...+..+-.+|..+|++++|..+|+++...+|. .+.
T Consensus 35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 345666666666666777777777777775555543333 556666666666777777777777777777777776 666
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH-HhccH---------HHHHHHHHHHHhcC-CCch-hH
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA-KANRY---------EQARNLFRQATKCN-PKSC-AS 150 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~---------~~A~~~~~~~~~~~-p~~~-~~ 150 (476)
...+-.+|.+.+.|.+-.+.--+..+..|.++..+.....++. ..... .-|...+++.++.. +-.. .-
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 6666666666666665555544555555665543333333222 22111 12334444444443 1111 11
Q ss_pred HHHHHHHHHHhccHHHHHHHHHH-HHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---------
Q 011845 151 WIAWSQMEMQQENNLAARQLFER-AVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL--------- 219 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~-a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------- 219 (476)
....-.++..+|.+++|...+.. ..+ ..+.+...-......+...+++.+-.++..+++...+++..++
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe 272 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLE 272 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHH
Confidence 12223445566778888777732 222 2333433334445555566666666666666666655541110
Q ss_pred ---------------------------------------HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---------
Q 011845 220 ---------------------------------------QSLALLEYKYSTANLARKLFRRASEIDPRHQP--------- 251 (476)
Q Consensus 220 ---------------------------------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 251 (476)
..+-.-+...|+.+++...|-+-+...|....
T Consensus 273 ~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l 352 (932)
T KOG2053|consen 273 LLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHL 352 (932)
T ss_pred hcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccC
Confidence 00111111223444433333332222221000
Q ss_pred -------------------------H--HHHHHHHHHHcCCh-----hHHHHHHHHH-------Hcc----CCCChhHHH
Q 011845 252 -------------------------V--WIAWGWMEWKEGNL-----DTARELYERA-------LSI----DSTTESAAR 288 (476)
Q Consensus 252 -------------------------~--~~~l~~~~~~~g~~-----~~A~~~~~~a-------~~~----~~~~~~~~~ 288 (476)
. +...-.+....|.+ +.-..++++. ++. .|.......
T Consensus 353 ~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~ 432 (932)
T KOG2053|consen 353 NIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGD 432 (932)
T ss_pred CHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHH
Confidence 0 00000011111211 1111111111 111 111111111
Q ss_pred HHH-----HHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh---hcch
Q 011845 289 CLQ-----AWGVLEQRVGN---LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE---VVDD 357 (476)
Q Consensus 289 ~~~-----~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 357 (476)
.+. .+-..+.+.++ +-+|+-.++..+..+|.+......+..+|.-.|-+..|.++|...--.... +...
T Consensus 433 ~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~ 512 (932)
T KOG2053|consen 433 ELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL 512 (932)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH
Confidence 111 22344555554 457888899999999999999999999999999999999888765332221 1122
Q ss_pred hhhhhhhcccchHHHHHHHHHhccccCCCCCCCC
Q 011845 358 ASWVMGFMDIIDPALDRIKQLLNLEKSSYKEPSA 391 (476)
Q Consensus 358 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 391 (476)
.-..+...|++.-+...+...+.+.-++.....+
T Consensus 513 ~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e 546 (932)
T KOG2053|consen 513 IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE 546 (932)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH
Confidence 2334455677777777777777766555444433
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1e-09 Score=93.59 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST---ANLARKLFR 240 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~ 240 (476)
.+..+.-++.-+..+|++.+-|..+|.+|..+|++..|...|.+++++.|+++..+..+|.++....+ ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555666666777777777777777777777777777777777777777777777777766655432 356777777
Q ss_pred HHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 241 RASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
+++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777777777777777777777777777777777777777665543
No 147
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=7.1e-08 Score=92.02 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI 96 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 96 (476)
.|......|..++|..+|++.-. +-.+-.+|...|.+++|.++.+.--.+. --..++..|..+...++.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 34444555666666666655422 1133445555566666555544321111 124556666666666666
Q ss_pred HHHHHHHHHhhc----------cCC----------CcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 97 KKARQLLAKGLK----------FCG----------GNEYIYQTLALLEAKANRYEQARNLFRQA 140 (476)
Q Consensus 97 ~~A~~~~~~~~~----------~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 140 (476)
+.|+++|+++-. -+| .++..|...|..+...|+.+.|+.+|..+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 666666665421 122 22344555566666666666666666655
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.16 E-value=4.5e-07 Score=79.52 Aligned_cols=285 Identities=16% Similarity=0.140 Sum_probs=120.6
Q ss_pred hcCCHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHH
Q 011845 23 KQSKVAEARAIYAKGSQAT-QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKAR 100 (476)
Q Consensus 23 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~ 100 (476)
-.|+-..|.+.-.+.-+.- ....+-++..-+..-.-.|+++.|.+-|+.++.. |+. .-.+..+-.-....|..+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 3445555554444443221 0112333333344445555555555555555431 211 111111222223445555555
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCchh---HHHHHHHHH-HHhccHHHHHHHHHH
Q 011845 101 QLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN---PKSCA---SWIAWSQME-MQQENNLAARQLFER 173 (476)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~ 173 (476)
.+-+++-...|.-+.++...-...+..|+|+.|+++.+...... ++..+ +-..-+... .-..+...|...-.+
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 55555555555555555555555555555555555555443321 11110 000011111 111234445555555
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHH
Q 011845 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA-RKLFRRASEIDPRHQPV 252 (476)
Q Consensus 174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~ 252 (476)
++++.|+....-..-+..+++.|+..++-.+++.+.+..| +|.++.. .++.+.|+.... .+-..+...+.|++.+.
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes 331 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALL--YVRARSGDTALDRLKRAKKLESLKPNNAES 331 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHH
Confidence 5555555544444555555555555555555555555544 2222211 111222221111 11122223344555555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHh
Q 011845 253 WIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV-GNLSAARRLFRSSLN 315 (476)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 315 (476)
....+......|++..|..--+.+....|... ++..++.+.... |+-.+...++-++++
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAREAPRES----AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhCchhh----HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55555555555555555555555555444432 223334444333 555555555555543
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.16 E-value=1.2e-09 Score=89.85 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=92.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (476)
.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456677888888888888888888888888766543 46788888888888888888888888888888888888888
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
|.++...|+...+...+..++. .+.+|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888887776655555432 3667777888888777766
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=4.8e-09 Score=84.08 Aligned_cols=198 Identities=20% Similarity=0.150 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|....+..+.|..+.-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 44555666666677777777777777777777777777777777777777777777777777777776667777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
-|++.-|.+-+.+..+.+|++|.--..+-.. ...-++.+|...+.+-.+...+....|...+.. .|+..+ ...++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~l~~ 220 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ETLME 220 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HHHHH
Confidence 7777777777777777777666422211111 122345555544433222222222222222211 222211 12233
Q ss_pred HHHccCCCChhH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 275 RALSIDSTTESA----ARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 275 ~a~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
++.....++... .+.++-+|..+...|+.++|...|+-++..+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 333333333222 3456667777777788888887777776544
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.15 E-value=3.1e-09 Score=84.55 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHH
Q 011845 58 KLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYE 131 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~ 131 (476)
..++...+...++.+...+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3555555555555555555555 2444455566666666666666666665554332 234555566666666666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666665442 222333445555666666666666666666554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=1e-09 Score=80.71 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHH
Q 011845 132 QARNLFRQAT 141 (476)
Q Consensus 132 ~A~~~~~~~~ 141 (476)
+|...+.+++
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=5.9e-09 Score=94.53 Aligned_cols=158 Identities=16% Similarity=0.059 Sum_probs=98.7
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHh---hcCcCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHhhccCCCcH
Q 011845 50 QCWAVLENKLG---NIGKARELFDAST---VADKGHIAAWHGWAVLELRQ---------GNIKKARQLLAKGLKFCGGNE 114 (476)
Q Consensus 50 ~~la~~~~~~g---~~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~ 114 (476)
+..|......+ ..+.|+.+|.+++ ..+|....++..++.++... ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44555554444 3456777788888 77787777777777776643 234456666666667777777
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF-EA 193 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~ 193 (476)
.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|...++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 77777777666666677777777777777777777777777766667777777777777777666554332222222 22
Q ss_pred HcCCHHHHHHHHHH
Q 011845 194 NMGFIDKGKKLLKI 207 (476)
Q Consensus 194 ~~~~~~~A~~~~~~ 207 (476)
-....+.|+.+|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 33444555555443
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=1.3e-09 Score=80.12 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE 162 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 162 (476)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555566666666666666666666655555555666666666666666666666666655555555555666666666
Q ss_pred cHHHHHHHHHHHHHcCC
Q 011845 163 NNLAARQLFERAVQASP 179 (476)
Q Consensus 163 ~~~~A~~~~~~a~~~~~ 179 (476)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666555555444
No 155
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.14 E-value=1.3e-06 Score=81.43 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID-PRHQPVWIAWGWMEW 261 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 261 (476)
..|..........|+++...-.|++++-........|..++......|+..-|...+..+.+.. |..+.+....+.+..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 3444445555555555555555555555554455555555555555555555555554444432 334444444444444
Q ss_pred HcCChhHHHHHHHHHHccCCCC
Q 011845 262 KEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 262 ~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
..|++..|...+++..+..|+.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~ 399 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGL 399 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCch
Confidence 4555555555555555444443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=5.7e-09 Score=83.01 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHH
Q 011845 229 YSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA 305 (476)
Q Consensus 229 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (476)
.++...+...++..+...|+. ..+.+.+|.++...|++++|...|+.++...|+......+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444444444 23334444444444555555555555444443333333334444444555555555
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 306 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
|+..++. +...+-.+.++..+|.++...|++++|...|+.
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544433 122222333444444444444444444444443
No 157
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.5e-07 Score=78.31 Aligned_cols=256 Identities=14% Similarity=0.009 Sum_probs=170.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
.+-++-.|+|..++..-.+..... ........+.+.|..+|++...+.-....- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 445566788888888777765443 666777788888888888766555443332 1223445555665555555555
Q ss_pred HHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 133 ARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 133 A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
-+.-+.+.+.... .+......-+.++...|++++|.+..... .+.++...-..++.+..+.+-|...++++..
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5544444333222 22334555567888888999998877662 3445666666778888888888888888887
Q ss_pred cCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 211 VNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
++.+ .++..+|..+.. .+++.+|.-+|+..-+..|..+......+.++..+|++++|...++.++..+++++.
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe- 242 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE- 242 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH-
Confidence 7643 344444444432 345778888888888877777888888888888888888888888888888888754
Q ss_pred HHHHHHHHHHHHHhCCHHHHHH-HHHHHHhhCCCcHH
Q 011845 287 ARCLQAWGVLEQRVGNLSAARR-LFRSSLNINSQSYI 322 (476)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 322 (476)
.+.++..+-...|...++.. ...+....+|+.+.
T Consensus 243 --tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 243 --TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred --HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 46777777777777766554 34444455666653
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.12 E-value=2.9e-09 Score=94.95 Aligned_cols=155 Identities=14% Similarity=0.081 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHcCC--Cc----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHc
Q 011845 163 NNLAARQLFERAVQASP--KN----RFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPR--D----PVLLQSLALLEYKY 229 (476)
Q Consensus 163 ~~~~A~~~~~~a~~~~~--~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~ 229 (476)
++++|+.+|++++.+.- +. ...+..+|.+|... |++++|+++|++++..... . ..++..+|.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555555544311 00 23444555555555 5666666666666554211 1 22445566666666
Q ss_pred CCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHH--
Q 011845 230 STANLARKLFRRASEIDPRH-------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQ-- 298 (476)
Q Consensus 230 ~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~-- 298 (476)
|+|++|+..|++.....-++ ...++..+.++...|++..|...+++....+|..... ..++..+..++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 66666666666655432111 1233445556666666666666666666666543322 223333333332
Q ss_pred HhCCHHHHHHHHHHHHhhC
Q 011845 299 RVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~ 317 (476)
....+++|+.-|.+...++
T Consensus 249 D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp -CCCHHHHCHHHTTSS---
T ss_pred CHHHHHHHHHHHcccCccH
Confidence 2233555555555544443
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=2.8e-09 Score=87.37 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.+.|.....+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3445556666666666666666666666554432 2356666666666666666666666666666666666666666
Q ss_pred HHHHc
Q 011845 259 MEWKE 263 (476)
Q Consensus 259 ~~~~~ 263 (476)
++...
T Consensus 115 i~~~~ 119 (168)
T CHL00033 115 ICHYR 119 (168)
T ss_pred HHHHh
Confidence 66533
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.11 E-value=3.7e-09 Score=91.76 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=89.1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHH
Q 011845 216 PVLLQSLALLE-YKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ 291 (476)
Q Consensus 216 ~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 291 (476)
....+..+..+ ...|++++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|+++.....++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45556666554 55688888888888888888877 468888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITW 324 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 324 (476)
.+|.++...|++++|...|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888889999999988888888877543
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=99.11 E-value=2.2e-08 Score=90.92 Aligned_cols=145 Identities=12% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHHHHHHH---hcCCCchhHHHHHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH
Q 011845 131 EQARNLFRQAT---KCNPKSCASWIAWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFI 198 (476)
Q Consensus 131 ~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 198 (476)
+.|+.+|.+++ .++|+...++..++.++... ....+|.+..+++++++|.++.++..+|.++...+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 34444455555 44444444444444444332 1234455555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 011845 199 DKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM-EWKEGNLDTARELYER 275 (476)
Q Consensus 199 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 275 (476)
+.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-++ .+-....++|+.+|-+
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 5555555555555555555555555555555555555555555555555443322222222 2223345555555544
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=4.2e-10 Score=76.84 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccC
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFC 110 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 110 (476)
+..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|+..++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444444444444444444444 3444444444444443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.10 E-value=3.2e-10 Score=80.72 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGE-NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQL 102 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 102 (476)
+|+|++|+..|++++...+.+ +...++.+|.++++.|++++|+.++++ ...++.+....+.+|.++..+|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345555555555555544211 333444455555555555555555555 444444445555555555555555555555
Q ss_pred HHH
Q 011845 103 LAK 105 (476)
Q Consensus 103 ~~~ 105 (476)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.10 E-value=7.7e-09 Score=92.23 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------
Q 011845 150 SWIAWSQMEMQQ-ENNLAARQLFERAVQASPK--N----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------- 215 (476)
Q Consensus 150 ~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------- 215 (476)
.+..+|.+|... |++++|+.+|+++++.... . ...+..++.++...|+|++|+..|++.....-++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344445555555 5566666666555554211 1 2344555666666666666666666655432111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHH--cCChhHHHHHHHHHHccC
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-----PVWIAWGWMEWK--EGNLDTARELYERALSID 280 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~ 280 (476)
...+...+.+++..|++..|...+++....+|... .....+..++.. ...++.|+..|.....++
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 12334455566666666666666666666655321 222333333322 234555555555544443
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=8.3e-10 Score=75.38 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-cHHHHHHHHHHHHHcC
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE-NNLAARQLFERAVQAS 178 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~ 178 (476)
.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...| ++++|+..++++++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444444444444444444444 3444444444444443
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.09 E-value=1.1e-08 Score=97.91 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh--------ccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHH
Q 011845 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQ--------ENNLAARQLFERAVQA--SPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
...|+.+|+++++.+|++..++..++.++... ++...+.....+++.. +|.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555544444332 1233444555554443 4555666666666666667777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845 200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 251 (476)
+|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77777777777776 4566677777777777777777777777777776653
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.09 E-value=9e-09 Score=77.23 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ---SYITWMTW 327 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 327 (476)
.+++.+|+++...|+.++|+.+|++++....+.......+..+|..+...|++++|...+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467778888888888888888888888877666666677778888888888888888888888887777 66677777
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 011845 328 AQLEEDQGNSVRAEEIRNLYF 348 (476)
Q Consensus 328 ~~~~~~~g~~~~A~~~~~~~~ 348 (476)
+.++...|++++|...+-..+
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 888888888888887765544
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=5.3e-10 Score=79.61 Aligned_cols=81 Identities=28% Similarity=0.253 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHhhcCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845 59 LGNIGKARELFDASTVADKG--HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL 136 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 136 (476)
.|+++.|+..+++++...|. +...++.+|.++++.|++++|+.++++ .+.+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777766663 345566667777777777777777776 666666666666667777777777777777
Q ss_pred HHHH
Q 011845 137 FRQA 140 (476)
Q Consensus 137 ~~~~ 140 (476)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6653
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.08 E-value=1.3e-08 Score=97.39 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=118.5
Q ss_pred HHhcCCCchhHHH--HHHHHHHHh---ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHH
Q 011845 140 ATKCNPKSCASWI--AWSQMEMQQ---ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG--------FIDKGKKLLK 206 (476)
Q Consensus 140 ~~~~~p~~~~~~~--~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~ 206 (476)
+....|.+..+|- ..|..+... +....|+.+|+++++.+|++..++..++.++.... +...+.....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3355567766654 344444443 34789999999999999999999888887775532 3456666677
Q ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 207 IGHAV--NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 207 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
+++.. .|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++|..+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 76664 677788999999999999999999999999999999 478999999999999999999999999999999988
Q ss_pred hH
Q 011845 285 SA 286 (476)
Q Consensus 285 ~~ 286 (476)
..
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 64
No 170
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=9.9e-09 Score=82.33 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=143.5
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 227 (476)
...++..|..|-..|-+.-|.--|.+++.+.|+-+.+++.+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34567778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHcCChhHHHHHH-HHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845 228 KYSTANLARKLFRRASEIDPRHQP--VWIAWGWMEWKEGNLDTARELY-ERALSIDSTTESAARCLQAWGVLEQRVGNLS 304 (476)
Q Consensus 228 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (476)
--|++.-|.+-+.+..+.+|++|. .|..+. ...-++.+|...+ +++...+.+.... -.+-.-+|+..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~-------~iV~~yLgkiS 214 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGW-------NIVEFYLGKIS 214 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhH-------HHHHHHHhhcc
Confidence 999999999999999999999874 333322 2334666776554 4454444333211 11122233322
Q ss_pred HHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhh
Q 011845 305 AARRLFRSSLNINSQS-------YITWMTWAQLEEDQGNSVRAEEIRNLYFQQR 351 (476)
Q Consensus 305 ~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 351 (476)
+ ...++++..-..++ .++++.+|..+...|+.++|..+|+.++...
T Consensus 215 ~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 215 E-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 12233333322222 3578999999999999999999998877643
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.07 E-value=5.7e-07 Score=78.88 Aligned_cols=260 Identities=15% Similarity=0.046 Sum_probs=199.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
+-++..-++.-.-.|+++.|.+-|+.++.. |.. .-.+..+-.-....|..+.|+.+-+.+....|.-+.++...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDD--PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcC--hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 345566677888899999999999998643 221 11222233334578999999999999999999999999988888
Q ss_pred HHHhCCHHHHHHHHHHhhcc---CCCcH---HH--HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 90 ELRQGNIKKARQLLAKGLKF---CGGNE---YI--YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~---~p~~~---~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
.+..|+++.|+++.+..... .++.. .+ +...+... -.-+...|...-.+++++.|+....-..-+..++..
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 99999999999999876543 22211 11 12222222 234688899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI---GHAVNPRDPVLLQSLALLEYKYSTANLARKL 238 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 238 (476)
|+..++-.+++.+.+..|.. .++. ..++.+.|+ .++.-+++ ...+.|++.+.....+...+..|++..|..-
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP-~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHP-DIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred cchhhhhhHHHHHHhcCCCh-HHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999998864 3322 223344454 44444444 4456799999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHcc
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKE-GNLDTARELYERALSI 279 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 279 (476)
-+.+....|.. .++..++.+.... |+-.++..++-+++..
T Consensus 352 Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 352 AEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999875 6777788887765 9999999999999985
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.07 E-value=1.6e-06 Score=84.00 Aligned_cols=226 Identities=13% Similarity=0.025 Sum_probs=160.1
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHH
Q 011845 22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQ 101 (476)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 101 (476)
...+++.+|+....+.++.. |+...+...-|..+.++|+.++|..+++..-...+++...+-.+-.+|...|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678888888888888887 78888888888888889999999888887777777777888888888888999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhccH---------HHHHHHH
Q 011845 102 LLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM-EMQQENN---------LAARQLF 171 (476)
Q Consensus 102 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~~~~---------~~A~~~~ 171 (476)
+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|..+........+ +...... .-|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999988888 77777777888888887776666666666777776543333333 3322222 2345555
Q ss_pred HHHHHcC-CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845 172 ERAVQAS-PK-NRFAWHVWGIFEANMGFIDKGKKLLKIG-HA-VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247 (476)
Q Consensus 172 ~~a~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 247 (476)
++.++.. +- ...-....-.++..+|++++|..++..- .+ ..+.+..........+...+++.+-.++..+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666554 21 1122234455667788888888887332 22 3333444445566777788888888888888888888
Q ss_pred CC
Q 011845 248 RH 249 (476)
Q Consensus 248 ~~ 249 (476)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 76
No 173
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.06 E-value=1.2e-10 Score=99.58 Aligned_cols=245 Identities=11% Similarity=-0.035 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE 162 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 162 (476)
+-..|.-|+++|.|++|+.+|.+++..+|.++..+.+.+..|++...+..|..-+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44567777888888888888888888888778778888888888888888888888888877777777777777777888
Q ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHHHHcCCHH
Q 011845 163 NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL---------LQSLALLEYKYSTAN 233 (476)
Q Consensus 163 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~la~~~~~~~~~~ 233 (476)
...+|.+-++.++.+.|++.+..-.++.+-. ..++.-.. +..|....+ .-.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~----KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIAT----KSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHh----hcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 8888888888888888876555444443322 22221111 111111111 112345566677777
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
.++.++.+-+.....+.....+ +..+.+..+++.++....+++..+|..... ...-+.+-.-.|...++...++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~---~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD---TSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc---cCCCchhHHHHhhhhhcCcchhhe
Confidence 7777776665555444333333 566667777778877777777665544221 222344444567777888888888
Q ss_pred HhhCCCcHHHHHHHHHH---HHHcCChHH
Q 011845 314 LNINSQSYITWMTWAQL---EEDQGNSVR 339 (476)
Q Consensus 314 l~~~p~~~~~~~~l~~~---~~~~g~~~~ 339 (476)
+.+.|.+......+... ....|+++.
T Consensus 328 ~~~~P~~~~~~~~~sr~~~~ii~~~~~~~ 356 (536)
T KOG4648|consen 328 VKVAPAVETPKETETRKDTKIVPESDNEA 356 (536)
T ss_pred eeeccccccchhhhhhhcccccccccccc
Confidence 88877765444333333 334455554
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.1e-09 Score=92.05 Aligned_cols=129 Identities=21% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQG---EN-----------PYIWQCWAVLENKLGNIGKARELFDASTVADKGH 79 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 79 (476)
....|..+++.|+|..|...|++++..-.. .+ ..++.+++.|+.++++|.+|+....+++..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 445688888999999999999998754311 11 1234444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHHh
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA-RNLFRQATK 142 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~ 142 (476)
..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|..++.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555555555555555554444444444444433333222 344444443
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=99.04 E-value=1e-08 Score=79.71 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=60.1
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
++..+..+..|.-++..|++++|..+|+-+...+|.++..+..||.++...+++++|+..|..+..+.++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33345555555556666666666666666655566666666666666666666666666666666666666666666666
Q ss_pred HHHHhccHHHHHHHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~ 176 (476)
++...|+.+.|+.+|..++.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666555
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.3e-09 Score=73.29 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=22.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 54 VLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
..++..|++++|+..|++++..+|.++.+|+.+|.++..+|++++|+..|+++++.+|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3333333333333333333333333333333333333333333333333333333333
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.8e-09 Score=72.69 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 333444444444444444444444444444444444444444444444444444444443
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.3e-09 Score=90.95 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCC----c-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGG----N-----------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC 148 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 148 (476)
...|..+++.|+|..|...|++++..-.. + ..++.+++.++.++++|.+|+..+.+++..+|++.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34567777777777777777777654221 0 23567777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 011845 149 ASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG-KKLLKIGHAVN 212 (476)
Q Consensus 149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~ 212 (476)
.+++..|.++...|+++.|+..|+++++..|.|..+...+..+..+..++.+. .+.|..++...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777777777777777777777777777777777777776666655554443 55666665443
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.01 E-value=1.6e-08 Score=87.82 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=50.4
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHH
Q 011845 81 AAWHGWAVLE-LRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIA 153 (476)
Q Consensus 81 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 153 (476)
..++..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|+++++..|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3333333333 33455555555555555555544 2455555555555555555555555555444432 344555
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+|.++...|++++|...|+++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555555555555443
No 180
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=1.9e-05 Score=72.62 Aligned_cols=342 Identities=14% Similarity=0.144 Sum_probs=218.4
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845 35 AKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE 114 (476)
Q Consensus 35 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (476)
++-++.+ |.|...|+.+..-+... -+++..+.|++.+...|..+.+|...+...+..++|+...++|.+++...- +.
T Consensus 10 ~~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl 86 (656)
T KOG1914|consen 10 RERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL 86 (656)
T ss_pred HHHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence 4556666 99999999998877665 999999999999999999999999999999999999999999999986532 34
Q ss_pred HHHHH-HHHHHHHhccHHHHHH----HHHHHHh---cCCCchhHHHHHHHHHH---------HhccHHHHHHHHHHHHHc
Q 011845 115 YIYQT-LALLEAKANRYEQARN----LFRQATK---CNPKSCASWIAWSQMEM---------QQENNLAARQLFERAVQA 177 (476)
Q Consensus 115 ~~~~~-la~~~~~~g~~~~A~~----~~~~~~~---~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a~~~ 177 (476)
+.|.. +..+-...|+...+.. .|+-++. .++.+...|...+..+. ...+.+.-.+.|++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 44433 3333333444433322 2333332 34555566666555432 233555666777777654
Q ss_pred CCCcH-HHHHHHHH-------------HHHHcCCHHHHHHH---------------------------------------
Q 011845 178 SPKNR-FAWHVWGI-------------FEANMGFIDKGKKL--------------------------------------- 204 (476)
Q Consensus 178 ~~~~~-~~~~~l~~-------------~~~~~~~~~~A~~~--------------------------------------- 204 (476)
.-.+. ..|...-. +......|..|...
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 33331 12211110 00111122223222
Q ss_pred ---------------------HHHHHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhccCC-C
Q 011845 205 ---------------------LKIGHAVNPRDPVLLQSLALLEYKYST--------------ANLARKLFRRASEIDP-R 248 (476)
Q Consensus 205 ---------------------~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~-~ 248 (476)
+++++..-+-.+++|+..+..+...++ .+++..+|++++.... .
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 233333344556677777766666665 6789999999987543 3
Q ss_pred CHHHHHHHHHHHHHcC---ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845 249 HQPVWIAWGWMEWKEG---NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM 325 (476)
Q Consensus 249 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 325 (476)
+...++.++..-...- +++.--..+++++.+...+... ++..+...-.+..-...|+.+|.++-+..-....++.
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL--v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL--VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce--ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 4455555555444333 3778888899888876555443 4555667777778889999999999776444334444
Q ss_pred HHHHH-HHHcCChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhcc
Q 011845 326 TWAQL-EEDQGNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNL 381 (476)
Q Consensus 326 ~l~~~-~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~ 381 (476)
.-|.+ |...++.+-|..+|+.-+...++ ........+..+++-..|..+|++++..
T Consensus 405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 44433 34578999999999988886553 3344555566667666666777766665
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.00 E-value=6.2e-10 Score=95.25 Aligned_cols=233 Identities=11% Similarity=-0.054 Sum_probs=162.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN 128 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 128 (476)
.-..|.-|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|+++..|..|..-+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888888888888888888888888888888888888888888777788888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH---------HHHHHHHHHHcCCHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA---------WHVWGIFEANMGFID 199 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~l~~~~~~~~~~~ 199 (476)
...+|.+-++.++.+.|++.+....++.+-. ..++.- +.+..|....+ .-.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 8888888888888888887665544444322 222111 11111111111 112345566777888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
.++.++.+-+....++.....+ +..+.+..+++.++.-..+++..+|........-+.+-.-.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 8888887766655554444344 666677777888888888887777766555666666666677788888888888888
Q ss_pred CCCChhHHHHH
Q 011845 280 DSTTESAARCL 290 (476)
Q Consensus 280 ~~~~~~~~~~~ 290 (476)
.|.+......+
T Consensus 331 ~P~~~~~~~~~ 341 (536)
T KOG4648|consen 331 APAVETPKETE 341 (536)
T ss_pred ccccccchhhh
Confidence 88776654333
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.99 E-value=2.2e-08 Score=91.53 Aligned_cols=115 Identities=13% Similarity=0.150 Sum_probs=54.7
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
++...++++.|+.++++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 333344444444444444444332 33334444444444444455555544444444444444444444455555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
.+.+++....|.+...|..|+.+|...|+++.|+..++
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555444455555555555555555544444
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.99 E-value=2.2e-08 Score=91.43 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN 164 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 164 (476)
.+..++...++++.|+.++++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445555667777777777777766653 4555677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
+.|+.+.++++...|.+...|+.++.+|...|+++.|+..++.+-
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777777777777777777777777766543
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=1.9e-08 Score=78.32 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=78.9
Q ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845 109 FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW 188 (476)
Q Consensus 109 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 188 (476)
+.++..+..+..|.-++..|++++|..+|+-+...+|.+++.|..||.++...+++++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 33444556677777777788888888888887777787778888888888888888888888888877777777777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 011845 189 GIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 189 ~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
|.++...|+.+.|+.+|..++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 8888888888888888877776
No 185
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.9e-05 Score=71.58 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHhcC--CHHHHHHHHHHhhccCCCCChH--HHHHHHHH-HHHcCCHHHHHHHHHHHhhcC---cCc---
Q 011845 11 GRPYVALGKVLSKQS--KVAEARAIYAKGSQATQGENPY--IWQCWAVL-ENKLGNIGKARELFDASTVAD---KGH--- 79 (476)
Q Consensus 11 ~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~--~~~~la~~-~~~~g~~~~A~~~~~~~~~~~---p~~--- 79 (476)
..++..+|..+...| +...++++++......+|...+ ....+|.+ +....+++.|...++++..+. |..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356777888888888 8899999999988776444333 44555654 456788999999999987432 333
Q ss_pred -HHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHH----HHHHHHHHHHHhccHHHHHHHHH
Q 011845 80 -IAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEY----IYQTLALLEAKANRYEQARNLFR 138 (476)
Q Consensus 80 -~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~ 138 (476)
.++...++.+|.... .+..+...++++++.....+. ..+.++.++.-..++..|++.+.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 355667888888877 788899999999988766653 45678888888888888887743
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.97 E-value=2.4e-05 Score=70.34 Aligned_cols=373 Identities=13% Similarity=0.135 Sum_probs=224.6
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
++-+|+|...|+.+.+.+..+|.+++-.+.|++...-. |--+.+|......-....++.....+|.+++... -+.+.|
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW 112 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLW 112 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHH
Confidence 57799999999999999999999999999999997766 7777788777666666788888888888887542 234555
Q ss_pred HHHHHHHHHhC---------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHH---------HhccHHHHHHHHHHHHhcCC
Q 011845 84 HGWAVLELRQG---------NIKKARQLLAKGLKFCGGNEYIYQTLALLEA---------KANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 84 ~~la~~~~~~~---------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p 145 (476)
......-.+.+ ..-+|-+..-...-.+|.....|...+..+. .+.+.+.-...|.+++...-
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcc
Confidence 44333222222 1223333333333445655555555554432 23344455555666655422
Q ss_pred Cchh-HH-----------------------------------------------------------------HHHHHHHH
Q 011845 146 KSCA-SW-----------------------------------------------------------------IAWSQMEM 159 (476)
Q Consensus 146 ~~~~-~~-----------------------------------------------------------------~~la~~~~ 159 (476)
++.+ .| .++.....
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 2211 11 11111111
Q ss_pred Hh-----ccH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845 160 QQ-----ENN--LAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA 232 (476)
Q Consensus 160 ~~-----~~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 232 (476)
.. |+. ..---.+++++...|-.+++|+.....+...++-+.|+....+++...|. ....++.+|...++-
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccH
Confidence 00 000 11112334455555555677777777777888888888888888776665 556667776666665
Q ss_pred HHHHHHHHHHhcc------------------CCC-CHH-----------HHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 233 NLARKLFRRASEI------------------DPR-HQP-----------VWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 233 ~~A~~~~~~~~~~------------------~~~-~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
+....+|+++.+. +|. .++ +|..+...-.+..-.+.|..+|-++-+..--
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 5555555554321 010 011 1222222223444567778888877665311
Q ss_pred ChhHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh-----hcc
Q 011845 283 TESAARCLQAWG-VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE-----VVD 356 (476)
Q Consensus 283 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 356 (476)
.. .++..-| .-+...|++.-|..+|+-.+...|+++.....+-..+...++-+.|..+|+..+.+-.. ++.
T Consensus 430 ~h---~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~ 506 (660)
T COG5107 430 GH---HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYD 506 (660)
T ss_pred Cc---ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHH
Confidence 11 1122222 33567899999999999999999999988888889999999999999999987764332 233
Q ss_pred hhhhhhhhcccchHHHHHHHHHhccccC
Q 011845 357 DASWVMGFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 357 ~~~~~~~~~g~~~~A~~~~~~al~~~p~ 384 (476)
.....-...|++..+..+=++...+-|.
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 3333344556666666555555554443
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.92 E-value=7.2e-07 Score=74.69 Aligned_cols=172 Identities=16% Similarity=0.095 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH---HHHHH
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR---FAWHV 187 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~ 187 (476)
+..++.-|....+.|++++|+..|+.+...+|.. ..+.+.++..+.+.+++++|+..+++-+.+.|.++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4455555666666666666666666666555543 23555555666666666666666666666555543 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH----------------
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP---------------- 251 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------- 251 (476)
.|.++...=+. .-....-...|+..|+..+...|++.-
T Consensus 114 kgLs~~~~i~~--------------------------~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 114 KGLSYFFQIDD--------------------------VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHhccCCc--------------------------cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 33332211000 000001112344445555555554321
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845 252 -VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311 (476)
Q Consensus 252 -~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 311 (476)
-=..+|..|.+.|.+..|+..++.+++..|+.......+..+..+|..+|-.++|...-.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 113456677777777777777777777777766666677777777777777777766544
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.91 E-value=7.8e-07 Score=74.48 Aligned_cols=188 Identities=14% Similarity=0.021 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQ 118 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~ 118 (476)
.+..|+.-|...++.|++++|+..|+.+....|..+ .+...++.++++.+++++|+..+++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 456677777777788888888888888777666543 6677777777888888888888888777776554 3555
Q ss_pred HHHHHHHHh--------ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 119 TLALLEAKA--------NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 119 ~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
..|.++... .-..+|+..|+..+...|++.-+-.....+ ..+...+ ..--...|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence 555554432 234456666667777777653211000000 0000000 011134455
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 249 (476)
.|.+.|.+..|+.-++.+++..|+. .+++..+..+|...|-.++|...-.-.-...|++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 5556666666666666665554443 2345555555666666555555443333333433
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.90 E-value=5.3e-08 Score=82.18 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845 219 LQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGV 295 (476)
Q Consensus 219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~ 295 (476)
.+..|.-++..|+|..|...|...++..|++ +.+++.||.+++.+|+++.|...|..+.+-.|+++.+.+.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6788888889999999999999999998875 4789999999999999999999999999999999998899999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 011845 296 LEQRVGNLSAARRLFRSSLNINSQSYITWMT 326 (476)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 326 (476)
+...+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998766543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.89 E-value=7.7e-08 Score=72.22 Aligned_cols=90 Identities=21% Similarity=0.099 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC---cHHHHHHHHHH
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG---NEYIYQTLALL 123 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~ 123 (476)
+.+|.++-..|+.++|+.+|++++...... ..+++.+|..+...|++++|+.++++.+...|+ +..+...++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 333444444444444444444443322111 233334444444444444444444444433333 33333333344
Q ss_pred HHHhccHHHHHHHHHH
Q 011845 124 EAKANRYEQARNLFRQ 139 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~ 139 (476)
+...|++++|+..+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 4444444444444333
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=1e-08 Score=69.68 Aligned_cols=65 Identities=29% Similarity=0.221 Sum_probs=37.1
Q ss_pred HHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHH
Q 011845 57 NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121 (476)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 121 (476)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|..++++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666655555555544444
No 192
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.5e-06 Score=77.09 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcch-----hhhhhhhcccchHHHHHHHHH
Q 011845 323 TWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDD-----ASWVMGFMDIIDPALDRIKQL 378 (476)
Q Consensus 323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~A~~~~~~a 378 (476)
.+++++..+.-.|++++|..++..+...-+..... ..++-.++|+.+.|+..+++.
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 45667777777777777777766555543322221 222334566777776666654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=7.1e-06 Score=68.35 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHH
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------PRDPVLLQSL 222 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l 222 (476)
+.+.++.++...|.|.-....+.+.++.+ |.++.....++.+..+.|+.+.|..++++.-+.. .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45556666666777777777777777666 4556666677777777777777777776443221 1223455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845 223 ALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293 (476)
Q Consensus 223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 293 (476)
+.++...+++..|...+.+++..+|.++.+.++.+.|..-.|+..+|++.++.++...|.......++.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 66666677777777777777777777777777777777777777777777777777766654433333333
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.87 E-value=3.7e-05 Score=71.98 Aligned_cols=362 Identities=13% Similarity=0.098 Sum_probs=249.7
Q ss_pred CHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH-HHHHHhCCHHHHHHHHH
Q 011845 26 KVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA-VLELRQGNIKKARQLLA 104 (476)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~ 104 (476)
..+.+...|...+... |..-..|...|..-.+.|..+.+..+|++++..-|...+.|..+. .+-...|+.+.-...|+
T Consensus 60 ~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3466677777777777 778889999999999999999999999999999998888888544 44446688888889999
Q ss_pred HhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH------hccHHHHHHHHHHHH
Q 011845 105 KGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ------QENNLAARQLFERAV 175 (476)
Q Consensus 105 ~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~a~ 175 (476)
++......+ ...|..+......++++..-..+|++.++.--.....++..-.-+.. .-..+++...-....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 998876543 45777777777888999999999999998743333222221111111 112233322222211
Q ss_pred Hc---------------------CCCc--HHHHHHHH-------HHHHHcCCHHHHHHHHHHHHhc-----CCC---CHH
Q 011845 176 QA---------------------SPKN--RFAWHVWG-------IFEANMGFIDKGKKLLKIGHAV-----NPR---DPV 217 (476)
Q Consensus 176 ~~---------------------~~~~--~~~~~~l~-------~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~ 217 (476)
.. .|.. ......+. .++.......+.+..++..+.. .|. .-.
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 10 0100 00110111 1122222333344444444432 222 234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE 297 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 297 (476)
.|..........|+++...-.|++++--.......|...+......|+.+-|...+..+.++.-..... +....+.+.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~--i~L~~a~f~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI--IHLLEARFE 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH--HHHHHHHHH
Confidence 677888888999999999999999999888899999999999999999999999999998875443332 233347888
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH---HHHHHHhhh--hhhc----chhhh-hhhhccc
Q 011845 298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE---IRNLYFQQR--TEVV----DDASW-VMGFMDI 367 (476)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~--~~~~----~~~~~-~~~~~g~ 367 (476)
...|++..|..++++.....|+...+-...+....+.|+.+.+.. ++....... ..+. ...++ .+...++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 889999999999999999889999988889999999999999883 333333211 1111 12222 3445578
Q ss_pred chHHHHHHHHHhccccCCCCCCC
Q 011845 368 IDPALDRIKQLLNLEKSSYKEPS 390 (476)
Q Consensus 368 ~~~A~~~~~~al~~~p~~~~~~~ 390 (476)
.+.|...+.+++++.|++.....
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHH
Confidence 89999999999999998766553
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.84 E-value=1.3e-07 Score=71.99 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
+..++.-|.-.+..|+|.+|++.|+.+....|.. ..+.+.++.+|+..|++++|+..+++.++++|.++.+..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5567777777788888888888888877777653 3577778888888888888888888888888888877777777
Q ss_pred HHHHHHHhCC---------------HHHHHHHHHHHHhhCCCcHHH
Q 011845 293 WGVLEQRVGN---------------LSAARRLFRSSLNINSQSYIT 323 (476)
Q Consensus 293 l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 323 (476)
.|.++..... ..+|...|++.+...|++..+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 7777777665 678888888888888887643
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1.8e-08 Score=68.44 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=27.0
Q ss_pred hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAW 185 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 185 (476)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444333
No 197
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=6.3e-07 Score=80.84 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCC--------CHHHHH
Q 011845 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA-SEIDPR--------HQPVWI 254 (476)
Q Consensus 184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~ 254 (476)
+.......+....+...+..-.+.+..+..+.+..+...+..++..|++.+|.+.+... +...|. ....|.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 33444556677777777888888888888888889999999999999999999887653 222232 234678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHcc---------CCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 255 AWGWMEWKEGNLDTARELYERALSI---------DSTT------ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~a~~~---------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
++|.++++.|.|.-+..+|.++++- .|.. .....++++.|..|...|++-.|.++|.+++.....
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999851 1111 112567899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHc
Q 011845 320 SYITWMTWAQLEEDQ 334 (476)
Q Consensus 320 ~~~~~~~l~~~~~~~ 334 (476)
++..|..++.|....
T Consensus 368 nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 368 NPRLWLRLAECCIMA 382 (696)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999998754
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.76 E-value=2.7e-06 Score=66.95 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA-VNPRDPVLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
....-..+.+...|.. .-.+.++..+...|++.+|...|++++. +..+++..+..+++..+..+++..|...+++..+
T Consensus 74 R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 74 RHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3333333333344433 2334555555555555555555555543 3344555555555555555555555555555555
Q ss_pred cCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845 245 IDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFR 311 (476)
Q Consensus 245 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 311 (476)
.+|. .++....+|..+...|.+.+|...|+.++...|+.... ..++..+.++|+.++|..-+.
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar----~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR----IYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH----HHHHHHHHHhcchhHHHHHHH
Confidence 5542 34445555555555555555555555555555543221 222555555555555444433
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=3.6e-07 Score=77.29 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHH
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLAL 122 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~ 122 (476)
.+..|.-++..|+|..|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4445555555555555555555555555543 2455555555555555555555555555544332 345555555
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 150 (476)
+...+|+.++|...|+++++..|+...+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 5555555555555555555555554433
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.73 E-value=3.8e-06 Score=66.14 Aligned_cols=146 Identities=14% Similarity=0.017 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
+++....-..+.+...|. ..-.+.++..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333334444444443 23455667777777777777777777665 4456666777777777777777777777777
Q ss_pred HHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 208 GHAVNPR--DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 208 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
..+.+|. .+.....+|..+...|++.+|...|+.++...|+ +......+..+..+|+..+|..-+...
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 7776663 3556667777777777777777777777777665 356666677777777666665544443
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=6.9e-07 Score=68.14 Aligned_cols=68 Identities=16% Similarity=0.006 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN 113 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (476)
+..++.-|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3344444444444555555555555444444332 2344444445555555555555555555444433
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=9.9e-08 Score=65.85 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..++++++..|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 334444444444444444444444444444444444444444444444444444444433
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.71 E-value=7.4e-07 Score=79.14 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845 184 AWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK 262 (476)
Q Consensus 184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (476)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777777777777777776555566777777777666 4455558888888888778777778777777777
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY 321 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 321 (476)
.|+.+.|..+|++++..-|.......+|..+.......|+.+....+.+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888777665542344566667777777888888888888777777643
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.71 E-value=9.5e-08 Score=65.95 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=30.5
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 150 (476)
++...+++++|++++++++..+|.++..+...|.++...|++.+|+..++++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 44444455555555555555555544455555555555555555555555555544444433
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=4.2e-07 Score=72.22 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
-+-.-|.-++..|+|++|..-|..++...|..+ ..+.+.|.++++++.++.|+..+.+++++.|.+..++...+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344457777888999999999999988877643 345578888899999999999999999999988888888899
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
+|.+...+++|+.-|.++++.+|....+.-..+++--..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 999999999999999999999988777766666554333
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6.2e-05 Score=74.27 Aligned_cols=192 Identities=18% Similarity=0.103 Sum_probs=92.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845 18 GKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK 97 (476)
Q Consensus 18 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 97 (476)
|.+....+-|++|..+|++- .-+..+... +....+..+.|.++.+++ +.+..|..+|.+..+.|...
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 44445555555555555543 112222111 112334445555544443 33556666666666666666
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845 98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177 (476)
Q Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 177 (476)
+|++.|-++ +++..+.....+..+.|.|++-+.++.-+.+... .+.+-..+...|.+.++..+-.+.+ .
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----c
Confidence 666666554 4555566666666666666666666665554422 1222233334444444444332221 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
.|+... .-..|.-++..|.|+.|.-+|.. ..-|..++..+...|+|+.|...-+++
T Consensus 1191 gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1191 GPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233322 23344445555555555554432 233444555555555555555554443
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=4.9e-07 Score=71.85 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH-----HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNE-----YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM 157 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 157 (476)
+-.-|.-++..|+|++|..-|..++...|..+ .++.+.|.++.+++.++.|+.-+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44556677778888888888888888877543 3566777778888888888888888888888887788888888
Q ss_pred HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845 158 EMQQENNLAARQLFERAVQASPKNRFAWHVWG 189 (476)
Q Consensus 158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 189 (476)
|.+...+++|+.-|+++++.+|....+....+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 88888888888888888888887655544433
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.66 E-value=1.9e-06 Score=76.50 Aligned_cols=133 Identities=22% Similarity=0.369 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ-QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
+|..+.....+.+..+.|..+|.++++..+....+|...|.+... .++.+.|..+|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554444445555555555444 2333335555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
.++.+.|..+|++++..-+... .+|..........|+.+....+.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555555444332 34444444455555555555555555444444
No 209
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=6.2e-05 Score=71.81 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAS 72 (476)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 72 (476)
...|+|+.|...++.. ... |+....|..++.+....|+.--|..+|..+
T Consensus 455 id~~df~ra~afles~-~~~-~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESL-EMG-PDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhh-ccC-ccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4578999998888765 555 677778888888888888877777776643
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00016 Score=60.51 Aligned_cols=227 Identities=11% Similarity=0.078 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------------------HHHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------------------EYIYQTLALLEAKANRYEQARNLFRQ 139 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 139 (476)
....|...-.++.+...+++|..-+...-.++..+ .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566666666777777777766665554443211 11223345555556666655554444
Q ss_pred HHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Q 011845 140 ATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-PRDPVL 218 (476)
Q Consensus 140 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 218 (476)
....- ..+..........+..+..+++-+. .+.+.++.++.-.|+|.-....+.+.++.+ |.++..
T Consensus 148 L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTVV-------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHHH-------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 32211 1111222222333445555555332 456677778888888888888888888877 566777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 219 LQSLALLEYKYSTANLARKLFRRASEID------PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
...+|.+..+.|+.+.|..+|+..-+.. .....+..+.+.++.-.+++..|...|.+++..+|.++.. ..+
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a---~Nn 291 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA---NNN 291 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh---hch
Confidence 8888888888888888888888543321 2233455667777777788888888888888888777544 456
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSY 321 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 321 (476)
-+.|..-.|+...|++..+.+++..|...
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 67777788888888888888888877654
No 211
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.58 E-value=4.2e-05 Score=72.91 Aligned_cols=295 Identities=15% Similarity=0.060 Sum_probs=128.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
.|.-+...|+++.|+..|-.+- .............+|.+|+.+++....... ....|-.++.-|...|+++
T Consensus 712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHH
Confidence 3444445555555555544331 111122223334455555555544332211 1223344555566666666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
-|.++|.++- ....-..+|.+.|++++|.++-++.. .|.. ...|...+.-+...|++.+|.++|-..-
T Consensus 783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 6666655431 11222344555666666655544432 2222 2334444555555566655555442211
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
.|+ .-...|-+.|.++..+.+.++- .|+. .+....+|.-+...|+...|...|-++-...
T Consensus 852 -~p~------~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k--------- 912 (1636)
T KOG3616|consen 852 -EPD------KAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK--------- 912 (1636)
T ss_pred -Cch------HHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH---------
Confidence 111 0112233333333333333221 2221 2455566777777777777776665543211
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH--------------HHhhCCCcH-HHHHHH------HHHHHHcCChHHHHHHHHHHH
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRS--------------SLNINSQSY-ITWMTW------AQLEEDQGNSVRAEEIRNLYF 348 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~--------------al~~~p~~~-~~~~~l------~~~~~~~g~~~~A~~~~~~~~ 348 (476)
.-...|...+-+++|..+-+. +-.+..+-. ..+... ...-...+-++-|.++-+...
T Consensus 913 --aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 913 --AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred --HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh
Confidence 112222333333333222211 000000000 000000 111122233333333333333
Q ss_pred h-hhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 349 Q-QRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 349 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
. ..+++...++..+...|++++|-+.|-.+++++.-|..
T Consensus 991 k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 991 KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred hccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence 2 34456666777777788888888888888887765443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.58 E-value=1.2e-07 Score=66.34 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 250 QPVWIAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
..++.++|.+|...|++++|+.+|++++++ .++++....++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456667777777777777777777777654 2233344566777777777777777777777777654
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.55 E-value=6.9e-06 Score=60.55 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHH
Q 011845 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST-TESAARCLQAWGVLEQ 298 (476)
Q Consensus 220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l~~~~~ 298 (476)
-.-|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+ .......+...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 344566666777777777777777777777777777777777777777777777777776433 2333445666677777
Q ss_pred HhCCHHHHHHHHHHHHhhCC
Q 011845 299 RVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~p 318 (476)
..|+-+.|..-|+.+-++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 77777777777777666543
No 214
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00067 Score=61.93 Aligned_cols=340 Identities=14% Similarity=0.125 Sum_probs=204.7
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHHHHhhccCC--CC----ChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcH---
Q 011845 12 RPYVALGKVLS-KQSKVAEARAIYAKGSQATQ--GE----NPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHI--- 80 (476)
Q Consensus 12 ~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~--- 80 (476)
.....+|.+++ ...+++.|...++++..... |. .-++...++.+|.... .+..|...+.++++.....+
T Consensus 47 rt~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ws 126 (629)
T KOG2300|consen 47 RTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWS 126 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhh
Confidence 44567776654 46889999999998875431 22 2345667788888777 78889999999987765544
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHhhcc-----------------------CCCcHH---------------------
Q 011845 81 -AAWHGWAVLELRQGNIKKARQLLAKGLKF-----------------------CGGNEY--------------------- 115 (476)
Q Consensus 81 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------------------~p~~~~--------------------- 115 (476)
...+.++.++.-..++..|.+.+.-.... .++..+
T Consensus 127 ckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~ 206 (629)
T KOG2300|consen 127 CKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQ 206 (629)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHH
Confidence 44557788888888888887764322111 010000
Q ss_pred ------HHHHHH-HHHHHhccHHHHHHHHHHHH---hc-CCC-----------c-hh--HH---------HHHH--HHHH
Q 011845 116 ------IYQTLA-LLEAKANRYEQARNLFRQAT---KC-NPK-----------S-CA--SW---------IAWS--QMEM 159 (476)
Q Consensus 116 ------~~~~la-~~~~~~g~~~~A~~~~~~~~---~~-~p~-----------~-~~--~~---------~~la--~~~~ 159 (476)
.+..+- ..|...|+...+...+++.- .. .+. + +. .| ..+. .--.
T Consensus 207 ~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm 286 (629)
T KOG2300|consen 207 KEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSM 286 (629)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhh
Confidence 011111 12223355544444444322 11 110 0 00 11 1111 1112
Q ss_pred HhccHHHHHHHHHHHHHcCCC------cH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------C
Q 011845 160 QQENNLAARQLFERAVQASPK------NR--------FAWHVWGIFEANMGFIDKGKKLLKIGHAVN---PR-------D 215 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~------~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-------~ 215 (476)
..|-+++|.++-++++..... .. ..+..++.+-.-.|++.+|++.+..+.+.. |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 346677777777777654211 11 223345556667799999988887776543 33 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CH--HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh-------
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPR-HQ--PVWIAWGWMEWKEGNLDTARELYERALSIDSTTES------- 285 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------- 285 (476)
+.++..+|......+.++.|...|..+.+.... +. .+-.+++..|.+.|+-+.-.+.++.. .|.+..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence 345667777777888889999999988876543 22 23456888899887765554444433 343211
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-c-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845 286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-S-----YITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
...+++..|...+..+++.+|...+.+.++.... + .-.+..++.+....|+..++.+...-..+....+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 1345666688888999999999999999887511 1 1245667788888899999888877776644433
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=7.3e-05 Score=61.34 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=59.7
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH----HHH
Q 011845 221 SLALLEYKY-STANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA----ARC 289 (476)
Q Consensus 221 ~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~ 289 (476)
.+|.+|... .++++|+.+|+++-+..... -..+...+..-...++|.+|+..|++.....-++... ...
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 455555443 56666666666665443221 1344445555566677777777777766554444322 233
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHH
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYIT 323 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 323 (476)
++.-|.|+.-..+.-.+...+++-.+++|...+.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 4455666666677777777777777777765543
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=1.2e-06 Score=79.76 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=54.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV---WIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
.+|+++..++++|.++...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777788888888888888888888888888888877744 788888888888888888888888776
No 217
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6e-05 Score=61.85 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNR------FAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYK 228 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 228 (476)
+++++|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 356666666666655543322 2233556666554 67777777777776554332 2245566667777
Q ss_pred cCCHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845 229 YSTANLARKLFRRASEIDPRHQ-------PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288 (476)
Q Consensus 229 ~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 288 (476)
.++|.+|+.+|++.....-++. ..++.-|.+++-..+.-.+...+++..+++|......+
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 7888888888888776554443 23445677777778888888888888888888766533
No 218
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0013 Score=60.56 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=64.8
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCcCcHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVADKGHIA 81 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 81 (476)
++...+.|+..|........+.+.+.+--.+|.+++... |+++.+|..-|.-.+..+. .+.|..+|.++++.+|+++.
T Consensus 97 at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 97 ATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 455667788888888777777777888888888888777 7888888877776666554 78888888888888888887
Q ss_pred HHHHHHHH
Q 011845 82 AWHGWAVL 89 (476)
Q Consensus 82 ~~~~la~~ 89 (476)
.|...-.+
T Consensus 176 Lw~eyfrm 183 (568)
T KOG2396|consen 176 LWKEYFRM 183 (568)
T ss_pred HHHHHHHH
Confidence 77654443
No 219
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.45 E-value=2.2e-05 Score=72.76 Aligned_cols=111 Identities=8% Similarity=-0.057 Sum_probs=90.1
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
+++.+|.+...+..-+.....+|+..+|+.++..++...++.. -.+...+|.++.+.|...+|--++..++...|....
T Consensus 205 glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~ 284 (886)
T KOG4507|consen 205 GLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS 284 (886)
T ss_pred hhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc
Confidence 4566777766555555555668999999999999987764433 346788999999999999999999998887776667
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGN 113 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (476)
-++.++.++...+.+......|..+.+..|..
T Consensus 285 n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 285 NYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 78899999999999999999999999888754
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.44 E-value=4.7e-06 Score=75.98 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=32.4
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH---HHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI---YQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
|+++.+|+++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444455555555555555555555555444444422 444444444444444444444444443
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.43 E-value=0.0013 Score=59.75 Aligned_cols=130 Identities=16% Similarity=0.088 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENP-----YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
.+...|-++-.++++.+|..+|.++.+.. ..++ +++.....-.+-.++.+.-...+-..-+..|..+......|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34556788889999999999999987654 2332 22222222223345555555555555555666666666777
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
...++.+.+.+|++.+......-... ...-...+.++...|++.+++..+++.+..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 77777888887777776554431110 111234566777778888877777776654
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0001 Score=63.89 Aligned_cols=158 Identities=9% Similarity=0.078 Sum_probs=119.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHc
Q 011845 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA-SPKN---RFAWHVWGIFEANM 195 (476)
Q Consensus 120 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~ 195 (476)
-+.+....|++.+|....++.++..|.+.-++..--.+++..|+...-...+++++.. +++- ..+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455566788888888888888888888887777777888888888888888888766 4443 34455667777888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHH
Q 011845 196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTARE 271 (476)
Q Consensus 196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 271 (476)
|-|++|.+.-++++++++.+..+....+.++...|++.++.+++.+.-..-... ..-|...+.++...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 888889888888888888888888888888888888888888877654332211 1234456777777888888888
Q ss_pred HHHHHH
Q 011845 272 LYERAL 277 (476)
Q Consensus 272 ~~~~a~ 277 (476)
+|.+-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 887654
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0001 Score=63.80 Aligned_cols=161 Identities=11% Similarity=-0.040 Sum_probs=132.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHc
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV-NPRDP---VLLQSLALLEYKY 229 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~la~~~~~~ 229 (476)
-+.+....|+..+|...+++.++..|.+.-++..--..++..|+...-...+++.+.. +++-| .+.-.++-.+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3456667899999999999999999999888888888899999999999999998876 66553 3455677778899
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHHHhCCHHHHHH
Q 011845 230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQAWGVLEQRVGNLSAARR 308 (476)
Q Consensus 230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 308 (476)
|-+++|.+.-++++++++.+.-+....+.++...|++.++.+...+.-..-..... +...|-..+.++...+.++.|.+
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999999999999999999999999999999999998876544322211 12234456888899999999999
Q ss_pred HHHHHH
Q 011845 309 LFRSSL 314 (476)
Q Consensus 309 ~~~~al 314 (476)
+|.+-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998654
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.35 E-value=2.3e-05 Score=57.82 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQ 160 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~ 160 (476)
..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++..+. ..++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555554222 1244455555555
Q ss_pred hccHHHHHHHHHHHHHcC
Q 011845 161 QENNLAARQLFERAVQAS 178 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~ 178 (476)
.|+.+.|..-|+.+-++.
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 555555555555554443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.33 E-value=1.3e-06 Score=61.05 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 117 YQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
+..+|.++...|++++|++++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=9.3e-06 Score=64.11 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH----------HHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNI----------KKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
|+.|.+.++.....+|.+.+.++..|.++..+.++ ++|+.-|++++.++|+...++..+|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45566666666666677776666666666554332 233444444444444444444444444443
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00035 Score=57.94 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=67.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccC---CCChhHHHHHHHHHHHH
Q 011845 227 YKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSID---STTESAARCLQAWGVLE 297 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~l~~~~ 297 (476)
...-++++|+++|++++.+...+ .+.+...+.++.+...+++|...+.+-.... .........+.....++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34456677777777766553322 2344556677777777877777666543321 11111122344444556
Q ss_pred HHhCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 011845 298 QRVGNLSAARRLFRSSLNI----NSQSYITWMTWAQLEEDQGNSVRAEEIR 344 (476)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 344 (476)
....++..|..+|+..-++ .|++..+..+|...| ..|+.++...++
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 6666888888888876654 345555666666555 456766665553
No 228
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0055 Score=61.28 Aligned_cols=225 Identities=13% Similarity=0.100 Sum_probs=138.3
Q ss_pred hcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHH
Q 011845 23 KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQL 102 (476)
Q Consensus 23 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 102 (476)
..+..+.|.++-++. +.+.+|..+|.+..+.|...+|++.|-++ +++..+........+.|.|++-+++
T Consensus 1087 ~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 356777777777665 45688888888888888888888888765 5667777888888888888888888
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 103 LAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 103 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+..+.+.. ..+.+-..+...|.+.++..+-.+.+ ..|+.. -....|.-++..|.|+.|.-+|...
T Consensus 1156 L~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1156 LLMARKKV-REPYIDSELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred HHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence 87776543 22334445556666667666544432 234433 3344566666677777776666542
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVN---------------------P----RDPVLLQSLALLEYKYSTANLARK 237 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~----~~~~~~~~la~~~~~~~~~~~A~~ 237 (476)
.-|..++..+..+|+|..|...-+++-... . -+.+-+-.+...|...|-+++-+.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHH
Confidence 345566666777777777766665542110 0 012233445555566666666666
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845 238 LFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
+++.++.+...+-..+..+|.+|.+ -++++-.+.++
T Consensus 1301 l~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLK 1336 (1666)
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 6666666555555555555555543 23444444443
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.30 E-value=1.8e-05 Score=62.52 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--
Q 011845 96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN----------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN-- 163 (476)
Q Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-- 163 (476)
++.|.+.++.....+|.+.+.+++-|..+..+. -+++|+.-|++++.++|+..+++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 567888888888888888888888777776653 35567777778888888888888888887776553
Q ss_pred ---------HHHHHHHHHHHHHcCCCcH
Q 011845 164 ---------NLAARQLFERAVQASPKNR 182 (476)
Q Consensus 164 ---------~~~A~~~~~~a~~~~~~~~ 182 (476)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4556666666666666654
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.29 E-value=0.0015 Score=62.53 Aligned_cols=177 Identities=19% Similarity=0.086 Sum_probs=124.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH----HcCCHHHHHHH
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-PVL------LQSLALLEY----KYSTANLARKL 238 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~------~~~la~~~~----~~~~~~~A~~~ 238 (476)
.|.-++.+-|.. ...+..+..-.|+-+.++..+.++.+...-. +.+ ++.....+. .....+.|.++
T Consensus 179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 444455555533 2344445556789999999999887632211 111 111111111 24566889999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
+....+..|+..-..+..|.++...|+.++|++.|++++.....-+.. ..+++.++.++.-.+++++|..+|.+..+.+
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999998888999999999999999999999988643333222 3467788999999999999999999999876
Q ss_pred CCcH-HHHHHHHHHHHHcCCh-------HHHHHHHHHHHh
Q 011845 318 SQSY-ITWMTWAQLEEDQGNS-------VRAEEIRNLYFQ 349 (476)
Q Consensus 318 p~~~-~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~ 349 (476)
.-+. ...+..|-|+...|+. ++|.+++.++-.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5544 3456778888899988 666666555543
No 231
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.28 E-value=0.00092 Score=62.30 Aligned_cols=188 Identities=9% Similarity=0.018 Sum_probs=95.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------cCcHHHHHHHHH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--------KGHIAAWHGWAV 88 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~ 88 (476)
.+.+..+.|+|+.-....... +...+...+..+......|+++++....+++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~----~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS----NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc----cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889998833333333 23344566666666678899999888888875421 111111111111
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHH-HHhccHHHHHHHHHHHHh----cCCCchhHHHHHHHHHH
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLE-AKANRYEQARNLFRQATK----CNPKSCASWIAWSQMEM 159 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~-~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~ 159 (476)
.+......+++..+....... +.. ...|...-... -....++.-+ .++..+- ........|...+.+..
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il-~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPIL-SLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 222233334444333221110 000 00111100000 0000011111 1111111 12344556777777788
Q ss_pred HhccHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 160 QQENNLAARQLFERAVQASP----KNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888777777776542 1356667777777777887788777777666
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.26 E-value=0.00093 Score=62.24 Aligned_cols=304 Identities=14% Similarity=0.109 Sum_probs=150.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC--------CcHHHHHHHHHH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG--------GNEYIYQTLALL 123 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~ 123 (476)
.+.+..++|+++.-.......- .+.+...+..+......++++++...++++...-- ......+.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3567788899988433333322 22335566666666688999999888888765421 111111122222
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhccHH--HHHHHHHHHHHc----CCCcHHHHHHHHHHHH
Q 011845 124 EAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQQENNL--AARQLFERAVQA----SPKNRFAWHVWGIFEA 193 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~----~~~~~~~~~~l~~~~~ 193 (476)
+....+.+++..+....... +.. ...|...-... ..+++ +-+-.++..+-. .......|..++.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22333444444443222111 000 11111111111 11111 111112222211 2234455666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-C--HHHHHHHHHHHHHcCCh
Q 011845 194 NMGFIDKGKKLLKIGHAVNP----RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR-H--QPVWIAWGWMEWKEGNL 266 (476)
Q Consensus 194 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~ 266 (476)
+.|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+..... . ......+......
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE---- 233 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence 66666666666666655431 13455566666666666666666666665552111 0 0000000000000
Q ss_pred hHHHHHHHHHHc---cCCCChhHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCh
Q 011845 267 DTARELYERALS---IDSTTESAARCLQAWGVLEQRV------GNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNS 337 (476)
Q Consensus 267 ~~A~~~~~~a~~---~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 337 (476)
.+..... ..........++..+|...... +..+++...|+++++.+|+...+|..+|..+...-+.
T Consensus 234 -----~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 234 -----SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred -----ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 0000000 0011122345667778877777 8999999999999999999999999999888765332
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845 338 VRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 338 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 384 (476)
.....-- ... -....-...|+..|-+++...++
T Consensus 309 ~~~~~~~-------------~~~-~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 309 DPREKEE-------------SSQ-EDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhhcccc-------------cch-hHHHHHHHHHHHHHHHHHhhCCC
Confidence 2211000 000 00111234577888888888776
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.25 E-value=0.00037 Score=63.11 Aligned_cols=168 Identities=13% Similarity=-0.000 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHHHHHHH
Q 011845 152 IAWSQMEMQQENNLAARQLFERAVQA----SPKNRFAWHVWGIFEAN---MGFIDKGKKLLKI-GHAVNPRDPVLLQSLA 223 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~~~la 223 (476)
..+-..|....+|+.-+++.+..-.. .++.+.+...+|.++.+ .|+.++|+.++.. .....+.+++++..+|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 33344444444444444444443333 22233344444444444 4445555555444 2223334444444444
Q ss_pred HHHHH---------cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------cc-CCCChh
Q 011845 224 LLEYK---------YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL--------SI-DSTTES 285 (476)
Q Consensus 224 ~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~--------~~-~~~~~~ 285 (476)
.+|.. ....++|+..|.++.+..|+. ..-.+++.++...|...+...-+++.. +. .-+...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 44432 112566777777777766543 333344444444443222221111111 00 000111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845 286 AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 320 (476)
.+..+..++.+..-.|++++|.+++++++...|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12233455666666777777777777777766543
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.23 E-value=0.00036 Score=64.17 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-----------------
Q 011845 51 CWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----------------- 113 (476)
Q Consensus 51 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----------------- 113 (476)
.+..-..+..+...-++...++++++|+.+.+|..++.- ......+|..+|+++++.....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 344445567788888888888888888888888777653 2334566777777766532110
Q ss_pred --------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 114 --------EYIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 114 --------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
..+...+|.+..+.|+.++|++.++.+++..|. +..++.++..++...+.+.++..++.+
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 122334444444445555555555544444432 223444444444444444444444444
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00088 Score=55.61 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
..+..-+.+|...+++++|..++.++.+-..++. ..+-..+.+......+.++..+|+++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 3444556666666677777776666664332221 122233333333344444444444443
Q ss_pred HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q 011845 155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYK 228 (476)
Q Consensus 155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 228 (476)
.+|...|..+.|...++++-+ .....++++|+++|++++.+...+ .+.+...+.++.+
T Consensus 99 -~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 99 -ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred -HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 334444444444444444332 223445666777777766554322 2244556677777
Q ss_pred cCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC-ChhHHHHHHHHHHHHHHhC
Q 011845 229 YSTANLARKLFRRASEI------DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST-TESAARCLQAWGVLEQRVG 301 (476)
Q Consensus 229 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l~~~~~~~g 301 (476)
...+.+|-..+.+-... .++....+.....++....+|..|..+++...++..- .+.-.+.+.++-.. +..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccC
Confidence 78887777666653322 2333345556666667777888888888887665221 11112334444333 3457
Q ss_pred CHHHHHHHHHH
Q 011845 302 NLSAARRLFRS 312 (476)
Q Consensus 302 ~~~~A~~~~~~ 312 (476)
+.++....+..
T Consensus 242 D~E~~~kvl~s 252 (308)
T KOG1585|consen 242 DIEEIKKVLSS 252 (308)
T ss_pred CHHHHHHHHcC
Confidence 77776665543
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.22 E-value=3.6e-06 Score=50.99 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
++..+|..|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.18 E-value=0.00018 Score=66.11 Aligned_cols=188 Identities=17% Similarity=0.137 Sum_probs=98.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN 164 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 164 (476)
.+..-..+..+...-++.-.++++++|+.+.++..++.-. .....+|..+|+++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 4444556778888888889999999998888888777532 3346677777777776532110 000000011110
Q ss_pred HHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 165 LAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
-+ .......+ ..+...++.+..+.|+.++|++.++.+++..|. +..++.++..++...+.+.++..++.
T Consensus 247 ~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 00000111 223345566666666666666666666655543 23355666666666666666666665
Q ss_pred HHhcc-CCCCHHHHHHHHHHHHH-cCC---------------hhHHHHHHHHHHccCCCChh
Q 011845 241 RASEI-DPRHQPVWIAWGWMEWK-EGN---------------LDTARELYERALSIDSTTES 285 (476)
Q Consensus 241 ~~~~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~ 285 (476)
+.-++ -|.+....+.-+.+-.+ .++ -..|++.+.+|++.+|..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 54332 23444433333332221 111 12355666777776666543
No 238
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.17 E-value=0.011 Score=59.29 Aligned_cols=312 Identities=13% Similarity=0.087 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhhccCCC---CChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCcC--cH----HHHHHHHHHHHHhCCH
Q 011845 27 VAEARAIYAKGSQATQG---ENPYIWQCWAVLEN-KLGNIGKARELFDASTVADKG--HI----AAWHGWAVLELRQGNI 96 (476)
Q Consensus 27 ~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~--~~----~~~~~la~~~~~~~~~ 96 (476)
...|+.+++-+++..++ ....+.+.+|.++. ...+++.|..++++++.+... .. ...+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34567778777743311 23457788888876 788999999999999765532 22 3344678888888877
Q ss_pred HHHHHHHHHhhccCCC---c-HHHHHHH--HHHHHHhccHHHHHHHHHHHHhcC--CCchhH----HHHHHHHHHHhccH
Q 011845 97 KKARQLLAKGLKFCGG---N-EYIYQTL--ALLEAKANRYEQARNLFRQATKCN--PKSCAS----WIAWSQMEMQQENN 164 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~----~~~la~~~~~~~~~ 164 (476)
. |...+++.++.... . ....+.+ ...+...+++..|++.++...... +.++.+ ....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999998876543 2 2222222 233333479999999999988775 344433 23335556667778
Q ss_pred HHHHHHHHHHHHcC------C----CcHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---h---cCC-------C-----
Q 011845 165 LAARQLFERAVQAS------P----KNRFAWHVWGI--FEANMGFIDKGKKLLKIGH---A---VNP-------R----- 214 (476)
Q Consensus 165 ~~A~~~~~~a~~~~------~----~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~---~---~~~-------~----- 214 (476)
+++++.++++.... | ....+|..+.. +....|+++.+...+++.- . ..+ +
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888887774321 1 12344444443 3456677667666554432 1 111 0
Q ss_pred ----------C-HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHhccC-------C---CCH----------
Q 011845 215 ----------D-PV-------------LLQSLALLEYKYSTANLARKLFRRASEID-------P---RHQ---------- 250 (476)
Q Consensus 215 ----------~-~~-------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~---~~~---------- 250 (476)
. +. ++..-|......+..++|.++++++++.- + ..+
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 0 00 22333455556676668877777776431 1 100
Q ss_pred ------HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHH-------
Q 011845 251 ------PVWIAWGWMEWKEGNLDTARELYERALSIDSTT------ESAARCLQAWGVLEQRVGNLSAARRLFR------- 311 (476)
Q Consensus 251 ------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~------- 311 (476)
.+.+..+.+..-.|++..|...++.+.+..... .....+++..|..+...|+.+.|..+|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 133456777778899999999998877653222 1224456777999999999999999998
Q ss_pred -HHHhhCCCcH---HHHHHHHHHHHHcCChHH
Q 011845 312 -SSLNINSQSY---ITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 312 -~al~~~p~~~---~~~~~l~~~~~~~g~~~~ 339 (476)
.+....+.+. -+..++..++...+....
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 3334444433 244566677766665333
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.16 E-value=6e-06 Score=50.01 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH
Q 011845 152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 186 (476)
..+|..|...|++++|+..|+++++.+|+++.+|.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 33333333333333333333333333333333333
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.15 E-value=0.0018 Score=58.79 Aligned_cols=170 Identities=9% Similarity=-0.051 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHH---hccHHHHHHHHHH-HHhcCCCchhHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKF----CGGNEYIYQTLALLEAK---ANRYEQARNLFRQ-ATKCNPKSCASWI 152 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~~~~~p~~~~~~~ 152 (476)
+....+-.+|....+|+.-+++.+.+-.. .+..+.+...+|.++.+ .|+.++|+..+.. .....+.+++++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444555555555555555555555444 23344455555555555 5555666655555 3333344555555
Q ss_pred HHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------hc
Q 011845 153 AWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH------------AV 211 (476)
Q Consensus 153 ~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~ 211 (476)
.+|.+|... ...++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. ..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 555554431 23566777777777666433 223344444444443222221111111 11
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 251 (476)
.-.+...+-.++.+..-.|++++|++.+++++...|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1223445566777778888888888888888888765543
No 241
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.15 E-value=0.012 Score=59.00 Aligned_cols=373 Identities=13% Similarity=0.087 Sum_probs=221.4
Q ss_pred CchhHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---cH
Q 011845 10 DGRPYVALGKVLS-KQSKVAEARAIYAKGSQATQGEN-----PYIWQCWAVLENKLGNIGKARELFDASTVADKG---HI 80 (476)
Q Consensus 10 ~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~ 80 (476)
.+.+++.+|.+++ ...+++.|..++++++......+ ....+.++.++.+.+... |...+++.++.... ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3567889999987 68999999999999987653221 223456688888888777 99999998865433 22
Q ss_pred HHHH-HH--HHHHHHhCCHHHHHHHHHHhhccC--CCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHhcCC------
Q 011845 81 AAWH-GW--AVLELRQGNIKKARQLLAKGLKFC--GGNEYIY----QTLALLEAKANRYEQARNLFRQATKCNP------ 145 (476)
Q Consensus 81 ~~~~-~l--a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p------ 145 (476)
..|. .+ .......+++..|++.++...... ..++.+. ...+.+....+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2221 22 333334489999999999988765 3444332 3345566667878888888887743221
Q ss_pred ----CchhHHHHHHHH--HHHhccHHHHHHHHHHH---HHc---CC---C---c-----------------H--------
Q 011845 146 ----KSCASWIAWSQM--EMQQENNLAARQLFERA---VQA---SP---K---N-----------------R-------- 182 (476)
Q Consensus 146 ----~~~~~~~~la~~--~~~~~~~~~A~~~~~~a---~~~---~~---~---~-----------------~-------- 182 (476)
....+|..+..+ +...|++..+...+++. ++. .+ . + +
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 123345544443 44567766666554443 221 11 0 0 0
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHHHHHHHHcCC
Q 011845 183 -----FAWHVWGIFEANMGFIDKGKKLLKIGHAVN-------PRD-------------------PVLLQSLALLEYKYST 231 (476)
Q Consensus 183 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~la~~~~~~~~ 231 (476)
-++..-+......+..+.|.+++.++++.- +.. ..+....+...+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 112233445566677767877777776421 110 0134456677778899
Q ss_pred HHHHHHHHHHHhccC---CC------CHHHHHHHHHHHHHcCChhHHHHHHH--------HHHccCCCChhHHHHHHHHH
Q 011845 232 ANLARKLFRRASEID---PR------HQPVWIAWGWMEWKEGNLDTARELYE--------RALSIDSTTESAARCLQAWG 294 (476)
Q Consensus 232 ~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~l~ 294 (476)
+..|....+.+.... |. .+..++..|..+...|+.+.|...|. .+....+..+...-...++.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 999998888776542 22 36778889999999999999999998 55556666665555556677
Q ss_pred HHHHHhCCHHH----HHHHHHHHHhh---CCCc-HHHH-HHHHHHHHHc--CChHHHHHHHHHHHhhh-hhh--------
Q 011845 295 VLEQRVGNLSA----ARRLFRSSLNI---NSQS-YITW-MTWAQLEEDQ--GNSVRAEEIRNLYFQQR-TEV-------- 354 (476)
Q Consensus 295 ~~~~~~g~~~~----A~~~~~~al~~---~p~~-~~~~-~~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~-------- 354 (476)
.++...+.... ....++..-.. .|+. ...+ ..+...+... -...++...+...++.. ...
T Consensus 457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~ 536 (608)
T PF10345_consen 457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI 536 (608)
T ss_pred HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 77776665444 44444433222 1111 1122 2222222111 12336666666666655 211
Q ss_pred -cchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845 355 -VDDASWVMGFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 355 -~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 384 (476)
..-+++.++ .|+..+.......+..+...
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k 566 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKK 566 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh
Confidence 123444444 56776666655555554433
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00044 Score=59.39 Aligned_cols=150 Identities=15% Similarity=-0.009 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEA 125 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~ 125 (476)
+.-+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|..++...-........ ........+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 344455666677888888888888888888888888888888888888888888887765433222211 1111122333
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCC
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFEANMGF 197 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~ 197 (476)
+.....+. ..+++.+..+|++.++.+.++..+...|+.+.|.+.+-..+..+.. +..+...+..++...|.
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33332222 2344556667888888888888888888888888888777776543 33444455555544443
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.09 E-value=0.0087 Score=58.91 Aligned_cols=274 Identities=18% Similarity=0.116 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhc-----CcCcHHHHHHHHHHHHHhC--
Q 011845 27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKL-----GNIGKARELFDASTVA-----DKGHIAAWHGWAVLELRQG-- 94 (476)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~-- 94 (476)
..+|..+++.+.... +......+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888886654 677777788877653 5888999999888651 1124556777888887743
Q ss_pred ---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh----ccH
Q 011845 95 ---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN---RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ----ENN 164 (476)
Q Consensus 95 ---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~ 164 (476)
+...|+.+|.++-... ++.+.+.+|.++.... +...|.++|..+... .+..+.+.++.+|..- -+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6677888888887664 5666777777777655 567888888888765 3567777777777642 367
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHH----cCCHHHH
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRDPVLL----QSLALLEYK----YSTANLA 235 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~----~~la~~~~~----~~~~~~A 235 (476)
..|..++.++.+.. ++.+...++.++... +.++.+...+.......-..+..- ......... ..+...+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 78888888888776 333344444443322 666666555554443332211110 000000000 1123334
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh---CCHHHHHH
Q 011845 236 RKLFRRASEIDPRHQPVWIAWGWMEWKE----GNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV---GNLSAARR 308 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~ 308 (476)
...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.++..- ..+..|..
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~------~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG------AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh------hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 444444332 23345555555555432 24556666666655544 11234555554421 11455555
Q ss_pred HHHHHHhhC
Q 011845 309 LFRSSLNIN 317 (476)
Q Consensus 309 ~~~~al~~~ 317 (476)
+|.++.+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 555555443
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.5e-05 Score=63.42 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=59.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
|..++....|..|+..|.+++.++|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhc
Q 011845 133 ARNLFRQATKC 143 (476)
Q Consensus 133 A~~~~~~~~~~ 143 (476)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666443
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=0.0029 Score=62.20 Aligned_cols=264 Identities=16% Similarity=0.075 Sum_probs=187.1
Q ss_pred CCchhHHHHHHHHHhc-----CCHHHHHHHHHHhhc----cCCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhh
Q 011845 9 EDGRPYVALGKVLSKQ-----SKVAEARAIYAKGSQ----ATQGENPYIWQCWAVLENKLG-----NIGKARELFDASTV 74 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~ 74 (476)
.+..+...+|.++..- .+.+.|+.+|+.+.. ......+.+.+.+|.+|.+.. ++..|..+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4556777788887653 589999999999976 111225667888999998853 77889999999877
Q ss_pred cCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhcCCCc
Q 011845 75 ADKGHIAAWHGWAVLELRQG---NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA----NRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 75 ~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~ 147 (476)
. .++.+.+.+|.++.... +...|.++|..+... .+..+.+.++.+|..- -+...|..++.++.+.+ .
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 5 46778889999988765 678999999999765 4788889999988753 47899999999999987 4
Q ss_pred hhHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCcHHH---HHH-HHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHH
Q 011845 148 CASWIAWSQMEMQQ-ENNLAARQLFERAVQASPKNRFA---WHV-WGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVL 218 (476)
Q Consensus 148 ~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~---~~~-l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 218 (476)
+.+...++.++... +.+..+...+.......-..+.. +.. ....... ..+...+...+.++.. ..++.+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a 473 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA 473 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence 45555555544332 77777776666555543322211 111 1101111 1245556666666544 446778
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHccCCCC
Q 011845 219 LQSLALLEYKY----STANLARKLFRRASEIDPRHQPVWIAWGWMEWKE---GNLDTARELYERALSIDSTT 283 (476)
Q Consensus 219 ~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~ 283 (476)
...++.+|..- .+++.|...|.++.... ....+++|.++..- .....|..+|.++.+.+...
T Consensus 474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 88888887754 46899999999998877 78899999998751 12789999999998876554
No 246
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.3e-05 Score=62.87 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
+...|..++....|..|+..|.+++..+ |..+..|.+.+.|+++..+++.+..-..++++++|+.....+.+|.+....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 4455777888889999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcc
Q 011845 94 GNIKKARQLLAKGLKF 109 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~ 109 (476)
..+++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999654
No 247
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0022 Score=53.96 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=114.8
Q ss_pred HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH-HHHH
Q 011845 58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE-QARN 135 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~ 135 (476)
+......|+.+...++..+|.+..+|...-.++...+ +..+-++++.++++.+|.+..+|...-.+....|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3345566777777778888887777776555554443 5666777777888888888888777777777777776 6777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHH
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MG-----FIDKGKKLLKIGH 209 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~ 209 (476)
+.+.++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 77778877777777777777777777778887777777777765554555433222111 11 1233345566667
Q ss_pred hcCCCCHHHHHHHHHHHHH
Q 011845 210 AVNPRDPVLLQSLALLEYK 228 (476)
Q Consensus 210 ~~~~~~~~~~~~la~~~~~ 228 (476)
...|++..+|..+.-++..
T Consensus 215 ~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HhCCCCccHHHHHHHHHHh
Confidence 7777777777777666654
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=5.7e-06 Score=46.56 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHH
Q 011845 309 LFRSSLNINSQSYITWMTWAQLEEDQGNSVRAE 341 (476)
Q Consensus 309 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 341 (476)
+|+++++++|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378889999999999999999999999988875
No 249
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0037 Score=52.60 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=154.9
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH-
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK- 97 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~- 97 (476)
++.+...-+.|+.+-+.++..+ |.+-.+|...-.++..++ +..+-++.+..+++.+|++..+|...-.+....|++.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 3444556778888888888888 788888877766665544 6778899999999999999999999988888999888
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH------hccHHHHHHHH
Q 011845 98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ------QENNLAARQLF 171 (476)
Q Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~ 171 (476)
.-+++.+.++..+..+..+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+... .-..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999887666666543222111 12344556778
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Q 011845 172 ERAVQASPKNRFAWHVWGIFEAN-MG--FIDKGKKLLKIGH-AVNPRDPVLLQSLALLE 226 (476)
Q Consensus 172 ~~a~~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~ 226 (476)
...+...|++..+|..+..++.. .| ............+ .....+|..+..+..+|
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88899999999999999888876 33 2333444444443 33334555555555555
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00053 Score=58.88 Aligned_cols=158 Identities=14% Similarity=0.001 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLEL 91 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~ 91 (476)
.-+..+.-....|++.+|...|..++... |.+..+...++.++...|+.+.|..++...-....... .........+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34556677888999999999999999998 88899999999999999999999999988644332221 11111223333
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhccHHHHHH
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQMEMQQENNLAARQ 169 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~ 169 (476)
+.....+. ..+++.+..+|++..+.+.++..+...|+.+.|.+.+-..++.+.. +..+...+..++...|.-+.+..
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 33333222 2345556678999999999999999999999999999999988643 44566666666666664444444
Q ss_pred HHH
Q 011845 170 LFE 172 (476)
Q Consensus 170 ~~~ 172 (476)
.++
T Consensus 294 ~~R 296 (304)
T COG3118 294 AYR 296 (304)
T ss_pred HHH
Confidence 333
No 251
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.02 E-value=0.00096 Score=62.38 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 34 YAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI--AAWHGWAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
...+++.. +.+...+..-+......|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..++...|
T Consensus 202 ~~~glq~~-~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 202 IHEGLQKN-TSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHhhhcC-chhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 33444443 44444444444445568999999999999987666543 5677899999999999999999998888877
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845 112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 112 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 149 (476)
....-++.++.++...+.+......|..+.+..|....
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 76667899999999999999999999999999886543
No 252
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00031 Score=58.20 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 149 (476)
.+.+++.|+...|+|-++++.....+...|.+..+++..|......-+..+|..-|.++++++|.-..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 45566666666666666666666666666666666666666666666666666666666666665433
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.98 E-value=0.00074 Score=64.69 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=119.4
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCc-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKN-RFA------WHVWGIFEA----NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL 225 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 225 (476)
+.--.|+-+.+++.+.++.+...-. +.+ |+.....+. .....+.|.+++.......|+....++..|++
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3334689999999999987732211 111 111111111 24567889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC
Q 011845 226 EYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG 301 (476)
Q Consensus 226 ~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g 301 (476)
+...|+.++|++.|++++.....- .-.++.+++++..+++|++|..++.+..+.+.-... ...+..|.++...|
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka--~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA--FYAYLAAACLLMLG 354 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHhhc
Confidence 999999999999999988543322 246778999999999999999999999987655433 34556689999999
Q ss_pred CH-------HHHHHHHHHHHhh
Q 011845 302 NL-------SAARRLFRSSLNI 316 (476)
Q Consensus 302 ~~-------~~A~~~~~~al~~ 316 (476)
+. ++|.+.|.++-..
T Consensus 355 ~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cchhhhhhHHHHHHHHHHHHHH
Confidence 99 8888888877544
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.93 E-value=0.028 Score=55.89 Aligned_cols=303 Identities=15% Similarity=0.030 Sum_probs=180.7
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hcCcCcHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGE-NPYIWQCWAVLENKLGNIGKARELFDAST-VADKGHIAAWHGW 86 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l 86 (476)
.-.+.+..-+..+...|...+|+...-.+ ..|. -.......+.-+...++..--..+.+.+- ..--.++......
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA---GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC---CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 33567777777888888888888765554 2121 12233333444555555443333333221 0011245566677
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCC--c-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-----hHHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGG--N-------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-----ASWI 152 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~ 152 (476)
+.......++.+|..++.++...-+. . ....-..|.+....|++++|.++.+.++..-|.+. .+..
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 88888899999999998887765332 1 23344566777788999999999999998877653 3567
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCC----CcHH--HHHHHHHHHHHcCCHHH--HHHHHHHH----HhcCCCCHHHHH
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASP----KNRF--AWHVWGIFEANMGFIDK--GKKLLKIG----HAVNPRDPVLLQ 220 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~--~~~~l~~~~~~~~~~~~--A~~~~~~~----~~~~~~~~~~~~ 220 (476)
.++.+..-.|++++|..+...+.+... .... +....+.++..+|+... ....+... +...|-+.....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 788888899999999999988877632 2222 33445777788883332 22223222 223343333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc----CCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHccCCCC--hhH--HHH
Q 011845 221 SLALLEYKYSTANLARKLFRRASEI----DPRHQP---VWIAWGWMEWKEGNLDTARELYERALSIDSTT--ESA--ARC 289 (476)
Q Consensus 221 ~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~--~~~ 289 (476)
..+.++...-+++.+..-....++. .|.... ..+.++.++...|++++|...+.......... ... ...
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 3333333333355555444444433 232222 23478899999999999999998887653222 111 111
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
..-........|+..+|..+..+..
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhcc
Confidence 2222334556788888888887743
No 255
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.93 E-value=9.6e-06 Score=45.63 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (476)
|+++++.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.92 E-value=0.0016 Score=59.25 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK---EGNLDTARELYERAL 277 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~ 277 (476)
-+.+|++|++.+|++...+..+-....+..+.++...-+++++..+|+++.+|..+...... .-.++.....|.+++
T Consensus 50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555443332222 123444444444444
Q ss_pred ccCC-----------C----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 278 SIDS-----------T----TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 278 ~~~~-----------~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
..-. . ......++..+.....+.|..+.|+..++-.++.+
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3200 0 11224566777888899999999999999999886
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0005 Score=57.04 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh--------cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTV--------ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (476)
.++..-|.-+++.|+|.+|...|..++. ..|..++ |. +++......+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~-----------------------eLdk~~tpLll 234 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WL-----------------------ELDKMITPLLL 234 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HH-----------------------HHHHhhhHHHH
Confidence 4555667777788888888888777652 1232222 11 12223456788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHH
Q 011845 119 TLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFA 184 (476)
Q Consensus 119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 184 (476)
+++.|+...|++-++++....++...|.+..+++..|.+....=+..+|..-|.++++++|.-..+
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975433
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.86 E-value=0.0072 Score=55.00 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=141.1
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 102 LLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 102 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
++++++...|-.+++|+.....+...++-+.|+....+++...|. ....++.+|...++-+....+|+++.+.-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 356666666777888888888888888888888877777666554 566677777777776666666666553210
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 182 RFAWHVWGIFEAN---MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 182 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
--+..+..-.. -|+++...+++-+-.. .-..++..+...-.+..-.+.|..+|-++-+..-....++..-|.
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred --HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 00011111111 2233222222222111 233445545455555555677777777776544223333333332
Q ss_pred H-HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcC
Q 011845 259 M-EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS--YITWMTWAQLEEDQG 335 (476)
Q Consensus 259 ~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g 335 (476)
+ +...|++.-|..+|+-.+...|+.+.. ....-..+...++-+.|...|++++..-... ..+|-.+......-|
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y---~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLY---KEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHH---HHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 2 345677788888888887777777544 2333556667777788888888776553333 456777777777778
Q ss_pred ChHHHHHHHHHHHhhhh
Q 011845 336 NSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 336 ~~~~A~~~~~~~~~~~~ 352 (476)
+...+..+-+++....|
T Consensus 517 ~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 517 SLNNVYSLEERFRELVP 533 (660)
T ss_pred chHHHHhHHHHHHHHcC
Confidence 88777777666665544
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.83 E-value=0.021 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
++-+.|.-.++.++|++|..+|+-++
T Consensus 248 LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 248 LLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44455777788888888888887665
No 260
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.79 E-value=0.0024 Score=58.05 Aligned_cols=110 Identities=14% Similarity=0.159 Sum_probs=61.8
Q ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHhCC------------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845 67 ELFDASTVADKGHIAAWHGWAVLELRQGN------------IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134 (476)
Q Consensus 67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 134 (476)
.-|++.+..+|.+..+|..++...-..-. .+.-+.+|++|++.+|++..++..+..+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34566677777777777777665443322 234455566666666666666666555555555666666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q 011845 135 NLFRQATKCNPKSCASWIAWSQMEMQ---QENNLAARQLFERAVQ 176 (476)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~ 176 (476)
+-+++++..+|++...|..+...... .-.++.....|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 66666666666666655544443332 1234455555555443
No 261
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.79 E-value=5.1e-05 Score=69.20 Aligned_cols=103 Identities=13% Similarity=0.014 Sum_probs=54.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
+.-.+..+.++.|+..|.++++++|+....+-..+..+.+.+++..|+.-+.++++.+|....+|+..|......+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 33344445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCchhHHHHHH
Q 011845 133 ARNLFRQATKCNPKSCASWIAWS 155 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la 155 (476)
|...|+......|+++.+...+.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHH
Confidence 55555555555555554444333
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.77 E-value=0.053 Score=54.07 Aligned_cols=295 Identities=16% Similarity=0.039 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-HHHHHHHHHHHHhCCHHHHHHHHHHhhccCC-----CcHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI-AAWHGWAVLELRQGNIKKARQLLAKGLKFCG-----GNEYIYQT 119 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~ 119 (476)
.+.+..-+.-+...|...+|+...-.+ .+|.-. ......+.-+...++..--. .+++.-| .++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHHHH
Confidence 556666677777788888887766544 223222 22223344444444443332 2222223 34566677
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCC--c-------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc-----HHHH
Q 011845 120 LALLEAKANRYEQARNLFRQATKCNPK--S-------CASWIAWSQMEMQQENNLAARQLFERAVQASPKN-----RFAW 185 (476)
Q Consensus 120 la~~~~~~g~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~ 185 (476)
.+.......++.+|..++.++...-+. . ....-..|.+....|++++|.++.+.++..-|.+ ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888889999999988887665433 1 1233445677788899999999999999887765 3456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHH--HHHHHHH----hccCCCCHHHH
Q 011845 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLA--RKLFRRA----SEIDPRHQPVW 253 (476)
Q Consensus 186 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A--~~~~~~~----~~~~~~~~~~~ 253 (476)
..++.+..-.|++++|..+..++.+..... ..+....+.++..+|+...| ...+... +...|-.....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 677888888999999999988887763221 22334456777788843322 2222222 22233333333
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----HHH-
Q 011845 254 IAWGWMEWKEGNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS-----YIT- 323 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~- 323 (476)
...+.++...-+++.+..-....++. .|..-.....+..++.++...|++++|..........--+. ..+
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 33333333222244444444444433 44444434444578999999999999999988877653222 111
Q ss_pred -HHHHHHHHHHcCChHHHHHHHHH
Q 011845 324 -WMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 324 -~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
...........|+.+.|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 12222334456888887776555
No 263
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.76 E-value=5.9e-05 Score=68.79 Aligned_cols=112 Identities=16% Similarity=0.055 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELR 92 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 92 (476)
..-..+...+..+.|+.|+..|.++++.. |+.+..+...+..+.+.+++..|+.-+.++++.+|....+|+..|.+...
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34456777888899999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
.+.+.+|...|+......|+++.+...+..+-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999998877766643
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.74 E-value=8.8e-05 Score=41.92 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
++..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0019 Score=51.90 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCChHHHHHHH
Q 011845 268 TARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS---YITWMTWAQLEEDQGNSVRAEEIR 344 (476)
Q Consensus 268 ~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 344 (476)
+.....++....++...........++..+...|++++|...++.++....+. ..+-.+++.+..+.|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44555566666665655554455567888888999999999999888543332 245678899999999999999888
Q ss_pred HHHHhh--hhhhcchhhhhhhhcccchHHHHHHHHHhccccC
Q 011845 345 NLYFQQ--RTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 345 ~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 384 (476)
+..... .+.+....|.++...|+-++|...|+++++..++
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 777664 2334567888999999999999999999988744
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.0015 Score=51.92 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 288 RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.++..++..+...|++++|+..+++++..+|-+..++..+..++...|+...|...|+.+..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999998865
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.012 Score=56.47 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH----------HHHHHHHHHhCC
Q 011845 26 KVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW----------HGWAVLELRQGN 95 (476)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~la~~~~~~~~ 95 (476)
..++|+++.+. ...+..|..+|......-.++-|...|-+.-.- +. .... ...+.+-.--|+
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 34555555443 356788888888777766777776666654221 11 1111 123334444577
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 96 IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
+++|.+.|-.+-..+ .-..++.+.|+|-...++++..-.-.. ....++..+|..+.....+++|.++|..
T Consensus 750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788877775543221 123345556666666555544321111 1134677777777777777777777765
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
.-. ...++.+++....+++-..+. ..-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 822 ~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 822 CGD--------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 421 123445555555555433332 23355666666666666666666666665543
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00013 Score=41.15 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 320 (476)
.+..+|.++...|++++|+++|++++.++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34555666666666666666666666666653
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.68 E-value=0.043 Score=50.30 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
.....|.++.+++++.+|..+|.++.+.....+ +.+.++..-.+-+++.+.-...+...-+..|..+.+....+.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 445568888999999999999999986544443 334444444455677777777777777778888888899999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCch-------------hHH--HHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSC-------------ASW--IAWSQMEMQQENNLAARQLFERAVQA 177 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~--~~la~~~~~~~~~~~A~~~~~~a~~~ 177 (476)
..++.+.+.+|++.+..-...-.... +.+ ...+.++...|++.++..++++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998877655421111 111 24577889999999999999988764
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=9.9e-05 Score=41.72 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666665
No 271
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0021 Score=55.92 Aligned_cols=99 Identities=15% Similarity=0.041 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLA 121 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 121 (476)
+..+-.-|.-|++..+|..|+.+|.+.+...-.+ ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4445555777777777777777777777643332 344557777777777777777777777777777777777777
Q ss_pred HHHHHhccHHHHHHHHHHHHhcC
Q 011845 122 LLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
.++..+.++.+|..+++..+.++
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777777777777777765553
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.65 E-value=0.00011 Score=41.49 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCc
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADK 77 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 77 (476)
+|+.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.62 E-value=0.0027 Score=50.51 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555555544
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.17 Score=56.13 Aligned_cols=292 Identities=10% Similarity=0.006 Sum_probs=163.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 16 ALGKVLSKQSKVAEARAIYAKGSQATQGE--NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 16 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
.++.+-++.+.|..|+-++++--....+. ....+..+-.+|...++++.-.-...... .+| .+..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADP----SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCc----cHHHHHHHHHhh
Confidence 67888889999999999999841111011 12334444558888888887766665421 122 234455566778
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHhccHHHHHHHHH
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS-QMEMQQENNLAARQLFE 172 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~ 172 (476)
|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-|..++ .+..+.++++.-..+..
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999999999988777777777777778888887777666655555554444443 23355555555444322
Q ss_pred -------------HH-HHcCCCcHHHH-HHHHHH----------HHHcCCHHHHHHHHHHHH-------------hcCCC
Q 011845 173 -------------RA-VQASPKNRFAW-HVWGIF----------EANMGFIDKGKKLLKIGH-------------AVNPR 214 (476)
Q Consensus 173 -------------~a-~~~~~~~~~~~-~~l~~~----------~~~~~~~~~A~~~~~~~~-------------~~~~~ 214 (476)
++ +.....+.... ..+... ....|-+..+.+..-+.. ...++
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 00 11111111000 000000 001112222222221111 01111
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 215 D-----PVLLQSLALLEYKYSTANLARKLFRRAS---EID----PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 215 ~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
+ ..-|.+....-....+..+-+-.+++++ ..+ ..-...|...|.+....|.++.|..++-.|.+..+.
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~ 1702 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP 1702 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc
Confidence 1 1122222211111122333333333332 122 234578888888888888888888888888776533
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
.+....|..+...|+...|+..+++.+..+
T Consensus 1703 -----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1703 -----EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred -----hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 245667888888888888888888888653
No 275
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.069 Score=49.66 Aligned_cols=92 Identities=17% Similarity=0.332 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHh
Q 011845 28 AEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGN-IKKARQLLAKG 106 (476)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~ 106 (476)
..-...|+.+.... +.|+..|........+.+.+.+--.+|.+++..+|++++.|..-|...+..+. .+.|..++.++
T Consensus 88 ~rIv~lyr~at~rf-~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRF-NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 34567788888887 78999999999988888889999999999999999999999999988887776 99999999999
Q ss_pred hccCCCcHHHHHHH
Q 011845 107 LKFCGGNEYIYQTL 120 (476)
Q Consensus 107 ~~~~p~~~~~~~~l 120 (476)
++.+|+++.+|...
T Consensus 167 LR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEY 180 (568)
T ss_pred hhcCCCChHHHHHH
Confidence 99999999887553
No 276
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.53 E-value=0.15 Score=52.80 Aligned_cols=329 Identities=12% Similarity=-0.015 Sum_probs=176.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHH----cC---CHHHHHHHHHHHhhcCcCcHHHH
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENK----LG---NIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g---~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
......++.....|+.|+..|+++.... |.. .++.+..|..... .| .+++|+..|++... .|.-+--|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 555 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEY 555 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHH
Confidence 3445577788899999999999998877 443 4566777765543 23 57888888888653 46667778
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCCCchhHHH---HHH
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA-----NRYEQARNLFRQATKCNPKSCASWI---AWS 155 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~---~la 155 (476)
...|.+|.+.|++++-+++|.-+++..|..+.+-...-.+-.++ .+-..|....--++...|.....-. .+-
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 89999999999999999999999999988765432222111111 1223344444444444444321100 000
Q ss_pred H----------------------------HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 156 Q----------------------------MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 156 ~----------------------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
. +-+-.|..---...++++.+..+- .+....-.+....|.++-+.+....
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0 001122222333445555544332 5555556666788888776665544
Q ss_pred HHhc-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCChhHHHHHH
Q 011845 208 GHAV-----NPRDPV--------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-VWIAWGWMEWKEGNLDTARELY 273 (476)
Q Consensus 208 ~~~~-----~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 273 (476)
.-.. .|.+.. .+..-..+......++++.+.+. ...|.... ++...+.-....++.+.-....
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYAFDLFAIQALLDEEGESIIQLL 790 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3321 121111 11111233334445555554333 22322221 1111222222233333333333
Q ss_pred HHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 274 ERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN--INSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
+..-...+.......+......+|.-..++++|-+.+..--. ...+...+...+|-.+.-.++-+-|...+..+.+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 791 QLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 332222222222122334445667777888888887743211 1233445667777777777888888777777663
No 277
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.53 E-value=0.059 Score=48.64 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHcC-------
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQ----QENNLAARQLFERAVQASPKN-RFAWHVWGIFEANMG------- 196 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~------- 196 (476)
+..+|..+|..+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..... ....+.++.++..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 3444555555322 22334444555555544 225555555555555543222 122344444443321
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845 197 FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG 264 (476)
Q Consensus 197 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (476)
+...|...|.++.... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 1124555555554443 45555555555533 2355566666666655544 45555555 444333
No 278
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.52 E-value=0.0062 Score=56.04 Aligned_cols=171 Identities=11% Similarity=-0.067 Sum_probs=97.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHH
Q 011845 209 HAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAAR 288 (476)
Q Consensus 209 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 288 (476)
+..+|-+.+++..++.++..+|+...|.+++++++-.........+..-..-...|. + +.--..+.|.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHHHH
Confidence 456788888888888888888888888888887764321100000000000000000 0 00001234444455
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-cHH-HHHHHHHHHHHcCChHHHHHHHHHHHh--------hhhhhcchh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ-SYI-TWMTWAQLEEDQGNSVRAEEIRNLYFQ--------QRTEVVDDA 358 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~ 358 (476)
+++.....+.+.|-+..|.++.+-.+.++|. |+- +++.+-....+.++++--+++++.... .-|......
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 6666677777777777777777777777777 653 444444445566666666666555433 122333445
Q ss_pred hhhhhhcccc---------------hHHHHHHHHHhccccCCCC
Q 011845 359 SWVMGFMDII---------------DPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 359 ~~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~ 387 (476)
+.++..+++. ++|...+.+|+...|.-..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 5566666666 7777777777777665433
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0095 Score=48.05 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845 119 TLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM 195 (476)
Q Consensus 119 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 195 (476)
.++..+...|++++|+..++.++....+. .-+-.+++.+....|.+++|+..+.......- .+......|.++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34444444444444444444444332111 11233444444444444444444433211100 112223344444444
Q ss_pred CCHHHHHHHHHHHHhcC
Q 011845 196 GFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 196 ~~~~~A~~~~~~~~~~~ 212 (476)
|+-++|+..|++++...
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 55555555554444443
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0068 Score=52.96 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
..+-.-|.-|++.++|..|+..|.+.++..-.+ ...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 445578999999999999999999999875443 4578899999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCC
Q 011845 157 MEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
++.....+.+|..+++..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999988766543
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.45 E-value=0.082 Score=47.72 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHH----hCC
Q 011845 24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKL----GNIGKARELFDASTVADKGHIAAWHGWAVLELR----QGN 95 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~ 95 (476)
.+++..|...+..+.... ++.....++.++... .+..+|..+|..+.. ..++.+.+.+|.++.. ..+
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 445555555555554322 224444444444332 234555555553322 3344555555555544 235
Q ss_pred HHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hcc
Q 011845 96 IKKARQLLAKGLKFCGGN-EYIYQTLALLEAKAN-------RYEQARNLFRQATKCNPKSCASWIAWSQMEMQ----QEN 163 (476)
Q Consensus 96 ~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~~ 163 (476)
..+|..+|+++....... ..+...++.+|..-. +...|...|.++.... ++.+...+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 555555555555443221 122444444444321 1124444444444433 34444444444432 124
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWG 189 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~ 189 (476)
+.+|..+|.++.+... ....+.++
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 4455555555544433 33444444
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.44 E-value=0.079 Score=47.27 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=29.9
Q ss_pred HHhccHHHHHHHHHHHHhcC-CCch-------hHHHHHHHHHHHhc-cHHHHHHHHHHHHHc
Q 011845 125 AKANRYEQARNLFRQATKCN-PKSC-------ASWIAWSQMEMQQE-NNLAARQLFERAVQA 177 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~la~~~~~~~-~~~~A~~~~~~a~~~ 177 (476)
...|+.+.|..++.++-... ..++ ..++..|......+ +++.|..+++++.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45667777777777665543 2222 23444555555555 666666666666554
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.37 Score=53.64 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC--------hhH
Q 011845 215 DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT--------ESA 286 (476)
Q Consensus 215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~ 286 (476)
-...|...|++....|+++.|...+-.+.+.. -+.+....|..++..|+...|+..+++.++.+-.+ +..
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 35688888999888999999988888887766 46788888999999999999999999888653211 110
Q ss_pred ------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845 287 ------ARCLQAWGVLEQRVGNL--SAARRLFRSSLNINSQSYITWMTWAQL 330 (476)
Q Consensus 287 ------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~ 330 (476)
..+...++......|++ .+-.++|+.+.+..|...+.++.+|..
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 12233445555566653 345678888888888666555555533
No 284
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.33 E-value=0.0044 Score=56.99 Aligned_cols=178 Identities=8% Similarity=-0.056 Sum_probs=88.8
Q ss_pred cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 103 (476)
.++.+.-+.+++ .. |-..+.+..++.++..+|+...|.+++++++-.........+.....-...|.. .
T Consensus 23 ~~Dp~~l~~ll~----~~-PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r--- 91 (360)
T PF04910_consen 23 SHDPNALINLLQ----KN-PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R--- 91 (360)
T ss_pred ccCHHHHHHHHH----HC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c---
Confidence 445555554443 33 788888888888888888888888888887632111100000000000000100 0
Q ss_pred HHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-chhHHHHHHH-HHHHhccHHHHHHHHHHHHHcC
Q 011845 104 AKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPK-SCASWIAWSQ-MEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 104 ~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
.--..+.| ..+.+.....+.+.|-+..|.++.+-.+.++|. |+-....... ...+.++++--+..++......
T Consensus 92 --L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 92 --LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred --cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 00001112 123344455555566666666666666666665 4433322222 2334455554555444433311
Q ss_pred CC-----cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 011845 179 PK-----NRFAWHVWGIFEANMGFI---------------DKGKKLLKIGHAVNPR 214 (476)
Q Consensus 179 ~~-----~~~~~~~l~~~~~~~~~~---------------~~A~~~~~~~~~~~~~ 214 (476)
.. -|..-+..+.++...++. +.|...+.+++...|.
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 10 123445555666666665 7788888888877764
No 285
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=0.00026 Score=61.76 Aligned_cols=90 Identities=24% Similarity=0.210 Sum_probs=62.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL 272 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (476)
...|.+++|++.|..++.++|.....+...+.++.+++++..|+.-+..+++++|+....+-..+.+...+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777666666666666667777777777
Q ss_pred HHHHHccCCC
Q 011845 273 YERALSIDST 282 (476)
Q Consensus 273 ~~~a~~~~~~ 282 (476)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 7777666433
No 286
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.25 Score=48.97 Aligned_cols=342 Identities=18% Similarity=0.190 Sum_probs=202.1
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcCcCcH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN---KLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
+..++.+...+..|..++...|++++-...=.++.... |..+.+|.....-.. ..+...++...|++++. +-..+
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v 183 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSV 183 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccc
Confidence 34567777788888889999999888776666666666 888888887765433 34678888999999885 34556
Q ss_pred HHHHHHHHHHH-------HhCCHHHHHHHHHHhhccCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 81 AAWHGWAVLEL-------RQGNIKKARQLLAKGLKFCG-------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 81 ~~~~~la~~~~-------~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
..|...+.... ..++++.-..+|.+++..-. .....+..+-..|...-..++-+.++...+... -
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~ 262 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-L 262 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-c
Confidence 66666555554 34567788888888876432 123455555566666666677777777777664 2
Q ss_pred chhH----HHHHH--H-HHHHhccHHHHHH-------HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 147 SCAS----WIAWS--Q-MEMQQENNLAARQ-------LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 147 ~~~~----~~~la--~-~~~~~~~~~~A~~-------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
+..+ |.... . ......+++.|.. .+++.++..|.....|..+.......|..-.-...+++++...
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 2221 11111 1 1112233333333 3444445555555677777788888888877777888887776
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHH-------------------------------HHHHHHH
Q 011845 213 PRDPVLLQSLALLEYK-YSTANLARKLFRRASEIDPRHQPVW-------------------------------IAWGWME 260 (476)
Q Consensus 213 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~ 260 (476)
+.+...|...+...-. .+-.+.+...+-+++..+|-....| .+....|
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~ 422 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAY 422 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665543321 1111112222222222222111111 1111111
Q ss_pred H-Hc-------------CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhCCCcHH-HH
Q 011845 261 W-KE-------------GNLDTARELYERALSIDSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSLNINSQSYI-TW 324 (476)
Q Consensus 261 ~-~~-------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~-~~ 324 (476)
. .. ..|..|...|.......-+ .....+..+|.++. ..++.+.++.++...+...-.+.. .|
T Consensus 423 rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~D--t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~W 500 (881)
T KOG0128|consen 423 RRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLD--TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKW 500 (881)
T ss_pred HHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHH
Confidence 1 11 1234444444444333111 11233444555544 467889999999888877655555 88
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 325 MTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 325 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
+....+....|+...+..+++.++..
T Consensus 501 le~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 501 LEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 99999999999999999988877763
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.23 E-value=0.00074 Score=38.02 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
++..+|.++...|++++|..+|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666653
No 288
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.17 E-value=0.00048 Score=60.11 Aligned_cols=123 Identities=16% Similarity=0.075 Sum_probs=94.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
+.-.+..|.++.|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-..+.....+|+|.+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34445678899999999999999999998899999999999999999999999999999988888888888888999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
|...+..+.+++-+. .+--.+-.+.-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999999998886432 2222233444444444444444444443
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.32 Score=47.30 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=118.8
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIW----------QCWAVLENKLGNIGKARELFDASTVA 75 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~la~~~~~~g~~~~A~~~~~~~~~~ 75 (476)
-+| .++.|..+|......-.++.|...|-+.-.- + -.... ...|.+-.--|.+++|.+.|-.+-..
T Consensus 688 dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY--~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 688 DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY--A-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc--c-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 344 6789999999999888899999888876321 1 11111 22344444568899999888654322
Q ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845 76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG--GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA 153 (476)
Q Consensus 76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 153 (476)
+ ....++.+.|+|-...++++..-.-.. .-..++..+|..+.....|++|.++|...-.. -.
T Consensus 764 ---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~ 827 (1189)
T KOG2041|consen 764 ---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------EN 827 (1189)
T ss_pred ---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------Hh
Confidence 1 223455677888777777665432221 12468889999999999999999998875322 23
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
++.+++...++++-. .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 828 ~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 828 QIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 456677776666543 33444577777888888888888888888887754
No 290
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.08 E-value=0.00084 Score=37.80 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
.+|+.+|.++...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566666666666666666666666666655
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.02 E-value=0.097 Score=44.62 Aligned_cols=206 Identities=10% Similarity=0.073 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhccC-----CCcHH-HHHHHHHHHHHhc
Q 011845 59 LGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKFC-----GGNEY-IYQTLALLEAKAN 128 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~-~~~~la~~~~~~g 128 (476)
....++|+..|++++++.+... .++-.+..+.+++|++++-...|.+++..- .+..+ ....+...-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777777777766543 345566677777777777777777665421 11111 1111111112223
Q ss_pred cHHHHHHHHHHHHhcC--CCchhHH----HHHHHHHHHhccHHHHHHHHHHHHHcCCCc------------HHHHHHHHH
Q 011845 129 RYEQARNLFRQATKCN--PKSCASW----IAWSQMEMQQENNLAARQLFERAVQASPKN------------RFAWHVWGI 190 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~--p~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~l~~ 190 (476)
+.+--..+|+..+..- ..+...| ..+|.+|+..|+|.+-.+++++.-...... .++|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 3333334444433321 2222333 468888888888887777776655432211 244555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCC-----H--HHHHHHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPR--DPVLLQ----SLALLEYKYSTANLARKLFRRASEIDPRH-----Q--PVWIAWG 257 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~----~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~--~~~~~l~ 257 (476)
+|..+.+-.+-..+|++++.+... +|.+.- .=|..+.+.|++++|-.-|-.+++..... . .-|..++
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777788888888888888876532 333222 22456778888999888888887764322 1 2344566
Q ss_pred HHHHHcC
Q 011845 258 WMEWKEG 264 (476)
Q Consensus 258 ~~~~~~g 264 (476)
..+.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 6666655
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.91 E-value=0.0027 Score=35.35 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444444
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.099 Score=44.58 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=34.4
Q ss_pred hCCHHHHHHHHHHhhccCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 93 QGNIKKARQLLAKGLKFCGGNE----YIYQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
....++|+..|++++++.+... .++..+..+++.+|++++-...|.+++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3467777777777777776543 3555666777777777777777777654
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.83 E-value=0.03 Score=44.04 Aligned_cols=77 Identities=22% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
..+-...++.+++..++..+--+.|..+..-..-|.++...|++.+|+.+++.+....|..+.+--.++.|+...|+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33334444555555555544444555555555555555555555555555555544444444444444444444443
No 295
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.21 Score=47.18 Aligned_cols=77 Identities=12% Similarity=-0.017 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 66 RELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 66 ~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
.+.+.......|+++......+..+...|+.+.|+..++..+. +.- .-.++.+|.++.-+.+|..|...+....
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333333444455554444555555555555555555555444 111 1123444555555555555555555554
Q ss_pred hcC
Q 011845 142 KCN 144 (476)
Q Consensus 142 ~~~ 144 (476)
...
T Consensus 331 des 333 (546)
T KOG3783|consen 331 DES 333 (546)
T ss_pred hhh
Confidence 443
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.80 E-value=0.0032 Score=34.98 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666664
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.75 E-value=0.033 Score=43.82 Aligned_cols=83 Identities=13% Similarity=0.002 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
.+.....+-...++.+++..++..+--+.|..+.+-..-|.++...|+|.+|+.+++.+....|..+.+--.++.|+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444444555556666666666655566666666666666666666666666666666555555555555555555555
Q ss_pred ccH
Q 011845 162 ENN 164 (476)
Q Consensus 162 ~~~ 164 (476)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 553
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.68 E-value=0.012 Score=53.98 Aligned_cols=125 Identities=10% Similarity=0.027 Sum_probs=91.6
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL 238 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 238 (476)
...|+.-.|-.-+..++...|..|......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34577777777777778888888877777788888888888888877666555444445555666667778888888888
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
-.-.+...-+++++....+......|-++++..++++.+.++|..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777777766677766666666667777888888888888877654
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.65 E-value=0.0044 Score=35.34 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666666666666666666644
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.64 E-value=0.042 Score=40.08 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
+++.|.++..+.|..+..++.+|.-+.....|+++....++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34445555555555444444444444444444444444444443
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.63 E-value=0.035 Score=39.49 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=23.6
Q ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 344455555555555555555555555555555555555555544
No 302
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.34 Score=46.73 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-------------CCcHHHHHHH
Q 011845 54 VLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-------------GGNEYIYQTL 120 (476)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------p~~~~~~~~l 120 (476)
..+...|.+++|...---.+. ..-|..+|.-....=+++-|.+.|.+...+. .....--..+
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 345667777776544221111 1347778887777788888888887764331 0000112344
Q ss_pred HHHHHHhccHHHHHHHHHH
Q 011845 121 ALLEAKANRYEQARNLFRQ 139 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~ 139 (476)
+.++.-.|++.+|.++|.+
T Consensus 639 A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 5555556666666666554
No 303
>PRK10941 hypothetical protein; Provisional
Probab=96.60 E-value=0.031 Score=48.96 Aligned_cols=70 Identities=13% Similarity=-0.014 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 287 (476)
.+.++-.++...++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455666777777777777777777777777777777777777777777777777777777777776653
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.53 E-value=0.02 Score=35.75 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 254 IAWGWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
+.++..+.+.|+|++|..+.+.+++..|++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3344444444444444444444444444443
No 305
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.52 E-value=0.038 Score=40.26 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 305 AARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 305 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
.++++|.++..+.|.....++.+|.-+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l 88 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQL 88 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHh
Confidence 466777777777777755555555543
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.50 E-value=0.047 Score=38.79 Aligned_cols=64 Identities=14% Similarity=-0.045 Sum_probs=32.9
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcc
Q 011845 100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS--CASWIAWSQMEMQQEN 163 (476)
Q Consensus 100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~ 163 (476)
+..+++.+..+|++..+.+.++..+...|++++|++.+-.+++.+++. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666666666666666666655443 3334444444444444
No 307
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=96.48 E-value=0.0013 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.6
Q ss_pred cccCCCcccccccCccccccCC
Q 011845 446 EKTSNPSVVRKVNYPRRRIFRP 467 (476)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (476)
.++..|+|+||++.+.|+.|||
T Consensus 38 dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 38 DPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred CCCCCCCccccCchhhhcccCC
Confidence 4566799999999999999997
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.47 E-value=0.027 Score=35.19 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQL 330 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 330 (476)
.++.++..+.+.|++++|..+.+.+++..|++..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 567789999999999999999999999999998876544433
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.46 E-value=1.2 Score=44.91 Aligned_cols=130 Identities=6% Similarity=-0.153 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHHHHHHH-
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWHGWAVL- 89 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~- 89 (476)
..+.-+.-.++.|++..+.....++ ... |- ..+.....+....+ .+++ +...+..+|+.+..-......
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l-~d~-pL--~~yl~y~~L~~~l~~~~~~e----v~~Fl~~~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTL-KDY-PL--YPYLEYRQLTQDLMNQPAVQ----VTNFIRANPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc-cCC-Cc--HhHHHHHHHHhccccCCHHH----HHHHHHHCCCCchHHHHHHHHH
Confidence 4456677777788888776666654 222 22 22322333322222 3443 333444556655443333222
Q ss_pred --HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 90 --ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 90 --~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
+.+.+++..-+.++ ...|.+....+.++......|+.++|.....++.......+.....+
T Consensus 107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l 169 (644)
T PRK11619 107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKL 169 (644)
T ss_pred HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHH
Confidence 33456666555533 23477788888888888889998888888777766654444443333
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.33 Score=38.58 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=46.2
Q ss_pred HcCCHHHHHHHHHHHhhcCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc----HHHHHHHHHHHHHhccHH
Q 011845 58 KLGNIGKARELFDASTVADKGH--IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN----EYIYQTLALLEAKANRYE 131 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~ 131 (476)
+.+..++|+..|..+-+.+-.. .-+.+..+.+....|+...|+..|..+-...|-- ..+...-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444444444444443322211 1233344444444444444444444443332110 112333334444444444
Q ss_pred HHHHHHHHHHh-cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 132 QARNLFRQATK-CNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175 (476)
Q Consensus 132 ~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 175 (476)
......+..-. .+|--..+.-.||..-++.|++.+|.+.|.++.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44333332211 111122233344444444555555555554443
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.44 E-value=0.016 Score=50.10 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=46.5
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
+.-..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3334466677777777777777777777777777776666666667777777777777766666655443
No 312
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.87 Score=43.18 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhccHHHHHHHHH
Q 011845 97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS----CASWIAWSQMEMQQENNLAARQLFE 172 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~ 172 (476)
+...+.+.......|+++......+.++...|+.+.|+..++..+. +.. .-.++.+|.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556666666778899999999999999999998888888888877 222 2246678888989999999999999
Q ss_pred HHHHcCCCcHHHHHHHH-HHH--------HHcCCHHHHHHHHHH
Q 011845 173 RAVQASPKNRFAWHVWG-IFE--------ANMGFIDKGKKLLKI 207 (476)
Q Consensus 173 ~a~~~~~~~~~~~~~l~-~~~--------~~~~~~~~A~~~~~~ 207 (476)
...+.+.-+.-.|..++ .++ ...|+-+.|..+++.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~ 371 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKV 371 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHH
Confidence 88776554433333333 222 223466655554443
No 313
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.43 E-value=0.73 Score=44.58 Aligned_cols=239 Identities=14% Similarity=0.112 Sum_probs=120.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------------CcCcHHHHH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------------DKGHIAAWH 84 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~p~~~~~~~ 84 (476)
..+...|.+++|...---. -...-|..+|.-....=+++-|.+.|.++-.. ....+ --.
T Consensus 564 ~q~Ieag~f~ea~~iaclg------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~i 636 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLG------VTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDL 636 (1081)
T ss_pred hhhhhccchhhhhcccccc------eecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHH
Confidence 4567788888876532221 22335778888888888999999999987421 11112 223
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-hhHHH-----------
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-CASWI----------- 152 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~----------- 152 (476)
.+|..+.-.|++.+|.++|.+.-..+ . ...+|..+..++.|.+++..+- |.. .....
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~en----R----AlEmyTDlRMFD~aQE~~~~g~---~~eKKmL~RKRA~WAr~~ke 705 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHEN----R----ALEMYTDLRMFDYAQEFLGSGD---PKEKKMLIRKRADWARNIKE 705 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchh----h----HHHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHhhhcCC
Confidence 56777888888888888887642211 1 1122233333333333322210 000 00111
Q ss_pred --HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845 153 --AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS 230 (476)
Q Consensus 153 --~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 230 (476)
..|.++...|+.++|+.+.- ..|-.+-+ ++-+-+++..+.+.+..++..+.+..
T Consensus 706 PkaAAEmLiSaGe~~KAi~i~~---------------------d~gW~d~l---idI~rkld~~ere~l~~~a~ylk~l~ 761 (1081)
T KOG1538|consen 706 PKAAAEMLISAGEHVKAIEICG---------------------DHGWVDML---IDIARKLDKAEREPLLLCATYLKKLD 761 (1081)
T ss_pred cHHHHHHhhcccchhhhhhhhh---------------------cccHHHHH---HHHHhhcchhhhhHHHHHHHHHhhcc
Confidence 12333344444444433211 11111111 11122233334445555555555555
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 231 TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 231 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
.+.-|.++|.+.-. ...+..++...+++.+|..+-++--+..|+- ++-.|..+.+..++++|.+.|
T Consensus 762 ~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV------y~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV------YMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccccc------cchHHHHhhhhhhHHHHHHHH
Confidence 66666666654422 1234455566777777776666554444432 444466666666666666666
Q ss_pred HHH
Q 011845 311 RSS 313 (476)
Q Consensus 311 ~~a 313 (476)
.++
T Consensus 828 hkA 830 (1081)
T KOG1538|consen 828 HKA 830 (1081)
T ss_pred HHh
Confidence 554
No 314
>PRK10941 hypothetical protein; Provisional
Probab=96.43 E-value=0.047 Score=47.83 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVL 218 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 218 (476)
+-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 33444555555555555555555555555555555555555555555555555555555555443
No 315
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.40 E-value=0.016 Score=50.12 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=33.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH
Q 011845 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW 188 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 188 (476)
..+.|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 33445555555555555555555555555555555555555555555555555555555444433
No 316
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.38 E-value=0.0072 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=8.0
Q ss_pred HHHHHHHHhccHHHHHHHHHH
Q 011845 119 TLALLEAKANRYEQARNLFRQ 139 (476)
Q Consensus 119 ~la~~~~~~g~~~~A~~~~~~ 139 (476)
.+|.+|...|++++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444443
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.34 E-value=0.9 Score=42.35 Aligned_cols=109 Identities=9% Similarity=-0.070 Sum_probs=74.3
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
+|+..|.++......+.+....|+|+.+...+..+-..- .........+-......|++++|.....-++...-++++.
T Consensus 315 ~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEV 393 (831)
T ss_pred HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhh
Confidence 355667777777777777777777777777766654333 2333445555666677777777777777777655566666
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCC
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGG 112 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (476)
....+......|-++++...+++.+.++|.
T Consensus 394 ~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 394 LTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred eeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 666666666777888888888888877663
No 318
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.25 Score=46.95 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc---------------------cCCCChhHHHHHHHHHHHHHHhCCHHH
Q 011845 247 PRHQPVWIAWGWMEWKEGNLDTARELYERALS---------------------IDSTTESAARCLQAWGVLEQRVGNLSA 305 (476)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (476)
|-+...+..++.+...+|+.+.|....++++= ..|.+.....+++.....+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 44455666677777777776666666555542 123343344455555666677788888
Q ss_pred HHHHHHHHHhhCCC-cHHHHHHHHHHH-HHcCChHHHHHHHHHHH-----hhhhhhcchhhhhhhhccc-----chHHHH
Q 011845 306 ARRLFRSSLNINSQ-SYITWMTWAQLE-EDQGNSVRAEEIRNLYF-----QQRTEVVDDASWVMGFMDI-----IDPALD 373 (476)
Q Consensus 306 A~~~~~~al~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~~~~~g~-----~~~A~~ 373 (476)
|.++.+-.+.++|. ++.+...+..+| .+..+|+=-+++++..- ...|......+.+++.+.. -+.|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Confidence 88888888888877 665544444444 34455555555544432 2334444444444443332 345777
Q ss_pred HHHHHhcccc
Q 011845 374 RIKQLLNLEK 383 (476)
Q Consensus 374 ~~~~al~~~p 383 (476)
.+.+|+.+.|
T Consensus 441 ~l~qAl~~~P 450 (665)
T KOG2422|consen 441 ALLQALKHHP 450 (665)
T ss_pred HHHHHHHhCc
Confidence 7777777777
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.25 E-value=0.095 Score=42.92 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
.++..+|..|.+.|+.+.|++.|.++............++..+..+....|++.....+..++-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345556666666666666666666666655555555555556666666666666666666655443
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.19 E-value=0.35 Score=37.52 Aligned_cols=71 Identities=8% Similarity=-0.028 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
.++.+++..++..+--+.|+.+.+-..-|.++...|+|.+|+.+++...+..+..+...-.++.|+...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444455444444445555555555555555555444444444444444444444443
No 321
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.18 E-value=1.6 Score=43.67 Aligned_cols=339 Identities=15% Similarity=0.168 Sum_probs=191.7
Q ss_pred ccCCCCchhHHHHHHHH---HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-------HcCCHHHHHHHHHHHhh
Q 011845 5 DYWPEDGRPYVALGKVL---SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-------KLGNIGKARELFDASTV 74 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~~~ 74 (476)
+..|.++..|..-..-. ...+.-.++...|++++... .++.+|...+.... ..++++....+|.+++.
T Consensus 141 ~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 141 EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 45677777776554332 23478888999999998654 56677766665554 34667888888888875
Q ss_pred cCcC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH----HHHHH--H-HHHHhccHHHHHH-----
Q 011845 75 ADKG-------HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI----YQTLA--L-LEAKANRYEQARN----- 135 (476)
Q Consensus 75 ~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~la--~-~~~~~g~~~~A~~----- 135 (476)
.-.. ....+..+-..|...-..++-+.++...+... -+..+ |.... . ......+++.|..
T Consensus 219 s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~ 297 (881)
T KOG0128|consen 219 SLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKI 297 (881)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHH
Confidence 3211 12334445555555555566777777766553 22211 11111 1 1112233444433
Q ss_pred --HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcC
Q 011845 136 --LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 136 --~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~ 212 (476)
.+++.+...|.....|..+.......|+...-...+++++...+.+...|...+...-. ++-.+.+...+.+++..+
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c 377 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC 377 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCC
Confidence 34444444555555677777778888888888888888887777777777766554321 111112222222222222
Q ss_pred CCCHHHH-------------------------------HHHHHHHH-HcC-------------CHHHHHHHHHHHhcc-C
Q 011845 213 PRDPVLL-------------------------------QSLALLEY-KYS-------------TANLARKLFRRASEI-D 246 (476)
Q Consensus 213 ~~~~~~~-------------------------------~~la~~~~-~~~-------------~~~~A~~~~~~~~~~-~ 246 (476)
|-...+| .+....+. ..+ .+..|...|...... .
T Consensus 378 p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~ 457 (881)
T KOG0128|consen 378 PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQL 457 (881)
T ss_pred chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2111111 11111111 111 123344444443333 1
Q ss_pred CCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCCcH-H
Q 011845 247 PRHQPVWIAWGWMEW-KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI--NSQSY-I 322 (476)
Q Consensus 247 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~-~ 322 (476)
......+...|.++. .+++.+.|+.++...+......- ...|.....+-...|+...++.++++++.. +|++. .
T Consensus 458 Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i--ag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~e 535 (881)
T KOG0128|consen 458 DTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI--AGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALE 535 (881)
T ss_pred hhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH--HHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHH
Confidence 112344555565554 46788999999888776644432 225667778888889999999999998865 34423 5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 011845 323 TWMTWAQLEEDQGNSVRAEEIRNLYF 348 (476)
Q Consensus 323 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 348 (476)
++..+-.+....|.++......++..
T Consensus 536 v~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhHHhhc
Confidence 66777777888888887765544443
No 322
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.09 E-value=0.019 Score=49.74 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=64.4
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 103 LAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA-WSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 103 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
|.++....|+++..|...+..-.+.|.+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444567777788877777777778888888888888888888887765 3445566778888888888888888888
Q ss_pred HHHHHHHHH
Q 011845 182 RFAWHVWGI 190 (476)
Q Consensus 182 ~~~~~~l~~ 190 (476)
|.+|...-.
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 777765443
No 323
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.8 Score=43.71 Aligned_cols=51 Identities=10% Similarity=-0.120 Sum_probs=23.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH-HcCChhHHHHHHH
Q 011845 224 LLEYKYSTANLARKLFRRASEIDPR-HQPVWIAWGWMEW-KEGNLDTARELYE 274 (476)
Q Consensus 224 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~ 274 (476)
..+.+.|-+..|.++++-.++++|. +|.+...+..+|. +..+|+=-++.++
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344455555555555555555554 4443333333332 3334444444333
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.59 Score=44.70 Aligned_cols=121 Identities=15% Similarity=-0.070 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcCcCcHHHHHH--HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHH-HH
Q 011845 65 ARELFDASTVADKGHIAAWHG--WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQ-AT 141 (476)
Q Consensus 65 A~~~~~~~~~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~ 141 (476)
++..+...+..++.++..+.. +...+...+....+.-.+...+..+|.+..++.+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443322 244444445555555555555555555555555555555444443333333333 44
Q ss_pred hcCCCchhHHHHH------HHHHHHhccHHHHHHHHHHHHHcCCCcHHHH
Q 011845 142 KCNPKSCASWIAW------SQMEMQQENNLAARQLFERAVQASPKNRFAW 185 (476)
Q Consensus 142 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 185 (476)
...|.+......+ +......|+..++...+.++....|.++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 4445544433322 4444444555555555555555555554433
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.03 E-value=0.48 Score=45.12 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845 185 WHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG 264 (476)
Q Consensus 185 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (476)
...++..+.+.|..+.|+.+.+ ++...+.++ .+.|+.+.|.+..+ ..+++..|..+|......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 4455555666666666555432 334444333 55666666655432 2234566666666666666
Q ss_pred ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 265 NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 265 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
+++-|..+|+++-. +..+..+|.-.|+.+.=.+..+.+
T Consensus 362 ~~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 362 NIELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp BHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 66666666665421 223345555556554444444433
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.66 Score=44.42 Aligned_cols=120 Identities=18% Similarity=0.005 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 011845 165 LAARQLFERAVQASPKNRFAWHV--WGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR- 241 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~- 241 (476)
.-++..+...+..++.++..... +...+...+....+...+...+..+|.+..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33555555555556666554332 345555556666666666666666666666666666666555555444444433
Q ss_pred HhccCCCCHHHHHHH------HHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 242 ASEIDPRHQPVWIAW------GWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 242 ~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
+....|.+......+ +......|+..++...++++....|.++
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 555566655444333 5555666666666666666666666663
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.94 E-value=0.57 Score=36.39 Aligned_cols=69 Identities=10% Similarity=-0.092 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845 196 GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG 264 (476)
Q Consensus 196 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (476)
++.+++..++..+--+.|+.+.+-..-|.++...|++.+|+.+|+...+..+..+...-.++.|+..+|
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 333333333333333334333333333444444444444444444433333333333333333333333
No 328
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.94 E-value=0.13 Score=53.65 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHH------HHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------C
Q 011845 11 GRPYVALGKVLSKQSKVAEARA------IYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------D 76 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~ 76 (476)
.......|......|.+.+|.+ .+........|.....+..++.++...|++++|+..-.++.-. .
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3445556666667777776666 5554444434666777777777777778777777776665421 1
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKF--------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
|+....+..++...+..++...|...+.++... .|.......++..++...++++.|+.+.+.++..
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333455566666666666766777666666543 2333445556666666666777777777766654
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.90 E-value=0.77 Score=43.75 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845 20 VLSKQSKVAEARAIYA--KGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK 97 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 97 (476)
.....|+++++....+ +.+..- .......++..+.+.|..+.|+.+. .+++..+.++ .+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i---~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI---PKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC---ChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence 3344677777666655 222111 2344566667777777777776543 2344444433 4667777
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845 98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177 (476)
Q Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 177 (476)
.|.+..++. +++..|..+|......|+++-|..+|+++- -+..+..+|.-.|+.+.-.++.+.+...
T Consensus 336 ~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 776655432 356677777777777777777777777642 2234445566666655544444444333
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 178 SPKNRFAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
...+ ..-.++...|+.++.++++.+
T Consensus 403 ~~~n-----~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDIN-----IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-HH-----HHHHHHHHHT-HHHHHHHHHH
T ss_pred cCHH-----HHHHHHHHcCCHHHHHHHHHH
Confidence 2211 112233344555555555443
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.90 E-value=0.13 Score=43.46 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCChh-------HHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 251 PVWIAWGWMEWKEGNLD-------TARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~-------~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
.++..+|++|...|+.+ .|+..|+++++.... ......+++.+|.+..+.|++++|..+|.+++..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 44555666666666533 344444444443322 1122345566677777777777777777777654
No 331
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.87 E-value=0.029 Score=48.66 Aligned_cols=88 Identities=13% Similarity=0.228 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS-LALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
.|.++....|+++..|...+......|-+.+.-..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444455567777777777777777777777777777777777777777765 344455667777777777777777777
Q ss_pred CHHHHHHHH
Q 011845 249 HQPVWIAWG 257 (476)
Q Consensus 249 ~~~~~~~l~ 257 (476)
+|.+|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 777776543
No 332
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.85 E-value=0.28 Score=36.17 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHcCChhHHHHHHHHHHccCCCChh---H------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 261 WKEGNLDTARELYERALSIDSTTES---A------ARCLQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 261 ~~~g~~~~A~~~~~~a~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
...|-|++|...+.++++....-+. . ..++..++..+..+|+|++++..-.++|.
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3456777777777777766433321 1 33455556666677777777766666654
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.83 E-value=0.017 Score=31.41 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 318 (476)
..+|.++...|++++|..+|+++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444444444444444444443
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.79 E-value=1.8 Score=40.92 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEA 193 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 193 (476)
...+..+..++.....+.-...++.+++... .+..+++.++++|... ..++-..++++.++.+-++...-..++..|.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3344444444444445555555566665553 3445566666666655 4455556666666666666555555555555
Q ss_pred HcCCHHHHHHHHHHHHh
Q 011845 194 NMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 194 ~~~~~~~A~~~~~~~~~ 210 (476)
. ++-..+..+|.+++.
T Consensus 144 k-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 144 K-IKKSKAAEFFGKALY 159 (711)
T ss_pred H-hchhhHHHHHHHHHH
Confidence 5 555566666665543
No 335
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.75 E-value=0.26 Score=37.34 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcC---ChhHHHHHHHHHHc-cCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845 251 PVWIAWGWMEWKEG---NLDTARELYERALS-IDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW 324 (476)
Q Consensus 251 ~~~~~l~~~~~~~g---~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 324 (476)
...+++++++.... +..+.+.+++..++ -.|+.. ...++.++..+.+.++|+.++.+....++..|++..+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r--Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR--RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc--hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45566666665443 34456666666665 223222 33455566667777777777777777777777666543
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.70 E-value=0.2 Score=41.00 Aligned_cols=100 Identities=19% Similarity=0.087 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--Chh-HHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH---QPVWIAWGWMEWKEGNLDTARELYERALSIDST--TES-AARCLQ 291 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~-~~~~~~ 291 (476)
++..+|..|.+.|+.+.|++.|.++....... .+.++.+..+....|++.....++.++-..... +.. ...+-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555555555566666666555555443221 234455555555666666666666555443211 111 112222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
.-|..+...++|.+|.+.|-.+....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 33566666777777777776665443
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.69 E-value=0.023 Score=30.86 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q 011845 52 WAVLENKLGNIGKARELFDAST 73 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~ 73 (476)
+|.++...|++++|+..|++++
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333333
No 338
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.60 E-value=0.51 Score=34.86 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC---CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hcCcCc
Q 011845 18 GKVLSKQSKVAEARAIYAKGSQAT---QGE--------NPYIWQCWAVLENKLGNIGKARELFDAST-------VADKGH 79 (476)
Q Consensus 18 a~~~~~~g~~~~A~~~~~~~~~~~---~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~p~~ 79 (476)
|.-.+..|-|++|...++++.+.. |+. +...+-.++..+..+|+|++++...++++ +++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 344566788888888888887532 221 23455667777788888887777666665 233333
Q ss_pred HHHH----HHHHHHHHHhCCHHHHHHHHHHhh
Q 011845 80 IAAW----HGWAVLELRQGNIKKARQLLAKGL 107 (476)
Q Consensus 80 ~~~~----~~la~~~~~~~~~~~A~~~~~~~~ 107 (476)
...| +..+..+...|+.++|+..|+.+-
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3333 345556666666666666666554
No 339
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.53 E-value=3.1 Score=41.93 Aligned_cols=52 Identities=12% Similarity=-0.179 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRN 345 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 345 (476)
..+..+...|....|...+..++.. .+..-...++.+....|.++.++....
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 3466777889999999999887765 335566778888888998888876654
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.44 E-value=0.024 Score=46.88 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=27.6
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 147 (476)
+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34444444455555555544444455555555555555555555555555554443
No 341
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.41 E-value=0.21 Score=42.25 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHhhC--CC----cHHHHHH
Q 011845 264 GNLDTARELYERALSI----DSTTESAARCLQAWGVLEQRVGNLSA-------ARRLFRSSLNIN--SQ----SYITWMT 326 (476)
Q Consensus 264 g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~--p~----~~~~~~~ 326 (476)
..+++|++.|.-|+-. ...+.....++..+|++|...|+.+. |.+.|++++... |. ...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3566666666655432 23333456678889999999999554 555555555443 22 2357788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 011845 327 WAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 327 l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
+|.+..+.|++++|...+.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999998888763
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.37 E-value=1.1 Score=35.76 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=75.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCh
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDP--VLLQSLALLEYKYSTANLARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNL 266 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 266 (476)
...++.++|+..|...-+..-... .+....+.+....|+...|+..|..+-...|-- ..+...-+.++...|-|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345666777777776655544332 345566777777888888888887766544321 12344556667777777
Q ss_pred hHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 267 DTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 267 ~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
++-....+..- .+.++.....-..+|..-.+.|++.+|..+|.+...
T Consensus 149 ~dV~srvepLa--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhcc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77665555432 223333333445567778888888888888887665
No 343
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.35 E-value=2.6 Score=39.89 Aligned_cols=78 Identities=13% Similarity=-0.043 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
..-..-++.+++... .+..+++.++.+|... ..++-..++++..+.+-++...-..++..|.+ ++...+..+|.+++
T Consensus 82 ~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 333334444444332 2334444555555444 33344444455544444444444444444443 44445555555544
Q ss_pred h
Q 011845 142 K 142 (476)
Q Consensus 142 ~ 142 (476)
.
T Consensus 159 y 159 (711)
T COG1747 159 Y 159 (711)
T ss_pred H
Confidence 3
No 344
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.30 E-value=0.029 Score=46.49 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=29.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845 194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249 (476)
Q Consensus 194 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 249 (476)
..++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555555555555555555555555555555555555555555543
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.26 E-value=0.51 Score=35.82 Aligned_cols=75 Identities=11% Similarity=-0.072 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845 44 ENPYIWQCWAVLENKLG---NIGKARELFDASTV-ADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (476)
.+....+.++.++.... +..+.+.+++..+. ..|.. -+..+.++..+++.++|+.++.+++..++..|++.++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34556666777776544 34566777777775 33432 356667777777777777777777777777777766543
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.14 E-value=0.4 Score=50.28 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCH
Q 011845 186 HVWGIFEANMGFIDKGKK------LLK-IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID--------PRHQ 250 (476)
Q Consensus 186 ~~l~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~ 250 (476)
...+......|.+.+|.+ ++. ..-...|.....+..++.++...|+.++|+..-.++.-+. |+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445555666777777777 444 2334567778899999999999999999999888776442 4455
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----CC-
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN-----SQ- 319 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~- 319 (476)
..+.+++...+..++...|+..+.++..+ .|+.+....+..+++.++...++++.|+.+.+.|+..+ |.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 67788888888888999999998888764 45566666667788888899999999999999998864 22
Q ss_pred --cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 320 --SYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 320 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
....+..++++....+++..|....+....
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 234566777777777777777666554443
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=2.3 Score=36.91 Aligned_cols=198 Identities=11% Similarity=-0.003 Sum_probs=116.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hc--CcCcHHH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGE-------NPYIWQCWAVLENKLGNIGKARELFDAST---VA--DKGHIAA 82 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~--~p~~~~~ 82 (476)
..+|+-....+++++|+..|.+++..+... .......++.+|...|++..-.+...... .. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 667888889999999999999998764222 23466788999999998775544443322 11 1222222
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchh
Q 011845 83 WHGWAVLE-LRQGNIKKARQLLAKGLKFCGGN------EYIYQTLALLEAKANRYEQARNLFRQATKC------NPKSCA 149 (476)
Q Consensus 83 ~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~ 149 (476)
...+...+ .....++.-+.++...++..... ...-..++.++++.|+|.+|+......+.- .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222221 12334555555555555432211 122345677788888888888777665532 133445
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHc-----CCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQA-----SPKNRFA--WHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
++..-..+|....+..++...+..+-.. .|....+ -..-|...+...+|..|-.+|-++++-.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 6666667777777777776666555432 2322222 2233455566677778887777776643
No 348
>PF13041 PPR_2: PPR repeat family
Probab=94.88 E-value=0.12 Score=31.99 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLE 56 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 56 (476)
|...|..+...+.+.|++++|.++|+++.+.+-+.+...+..+...+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456666677777777777777777777665555666655554443
No 349
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=3.3 Score=37.05 Aligned_cols=267 Identities=14% Similarity=0.030 Sum_probs=135.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---Cc--CcH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQA--TQGEN-------PYIWQCWAVLENKLGNIGKARELFDASTVA---DK--GHI 80 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p--~~~ 80 (476)
...+.......++++++.+|.+++.. .+..+ ......++..+.+.|+..+-.......-.. -+ ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 55666677778889999999998863 21122 235677889999999888766666554211 11 111
Q ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhc----C--CCc
Q 011845 81 AAWHGWAVLEL-RQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKC----N--PKS 147 (476)
Q Consensus 81 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~--p~~ 147 (476)
.....+..... ..+..+.-+.++..+++...... ..-..++.+|...++|.+|+......++- + +.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 11222222221 12333344444444444322111 12345667777777777777766655432 1 122
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-----CCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHH
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQAS-----PKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHAVNP---RDPV 217 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~ 217 (476)
.+++..-...|....+..+|...+..|-... |... .+-..-|.++....+|..|..+|-++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 3445555566666777777766666554321 2111 1122334455555677777777766665332 1122
Q ss_pred HHH---HHHHHHHHcCCHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHccCC
Q 011845 218 LLQ---SLALLEYKYSTANLARKLF--RRASEIDPRHQPVWIAWGWMEWK--EGNLDTARELYERALSIDS 281 (476)
Q Consensus 218 ~~~---~la~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~ 281 (476)
+.. .+-.+-...+..++.-.++ +.+++....+..+....+.++.+ ..+|+.|+.-|..-+..+|
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 221 1222222334444332222 23444444445555555555543 3455566655555554433
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.97 Score=43.74 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 011845 253 WIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQ 329 (476)
Q Consensus 253 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 329 (476)
+.+-+.-+++..+|..++++|...+...|.+. ........++.||..+.+.+.|.+++++|-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34456667788999999999999988766553 235566778999999999999999999999999999988888888
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 011845 330 LEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 330 ~~~~~g~~~~A~~~~~~~~~ 349 (476)
+....|.-++|.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHhcchHHHHHHHHHHHh
Confidence 88889999999888766655
No 351
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=3.6 Score=40.08 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=57.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845 189 GIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK 262 (476)
Q Consensus 189 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (476)
+.-.++..+|..+++.|...+...|.+. .....++.+|....+.+.|.++++++-+.+|.++.....+-.+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 4445556666667777766666555442 2445566666666677777777777776666666666666666666
Q ss_pred cCChhHHHHHHHHHHcc
Q 011845 263 EGNLDTARELYERALSI 279 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~ 279 (476)
.|.-++|+.+.......
T Consensus 441 E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSS 457 (872)
T ss_pred hcchHHHHHHHHHHHhh
Confidence 66666666666655543
No 352
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.49 E-value=7.4 Score=40.88 Aligned_cols=97 Identities=13% Similarity=-0.010 Sum_probs=75.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcH---HHHHHHHHHHHHh----C---CHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHI---AAWHGWAVLELRQ----G---NIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
-.++.....|+.|+..|+++-...|... ++.+..|.....+ | .+++|+..|++.- -.|..+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 4566778889999999999998888654 6667777766543 2 4667777777653 34566777888899
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 150 (476)
+|..+|++++-++.|.-+++..|..|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999888764
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.49 E-value=0.63 Score=38.34 Aligned_cols=76 Identities=22% Similarity=0.096 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHhhcC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC----cHHHHHHHHHHHHHhccHHHH
Q 011845 59 LGNIGKARELFDASTVAD-KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG----NEYIYQTLALLEAKANRYEQA 133 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A 133 (476)
.-.-+.|...|-++-... -++++..+.+|..|. ..+.++++.++.++++..+. +++++..|+.++...|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334467777777654322 245777888888776 67889999999999987543 588999999999999999988
Q ss_pred HH
Q 011845 134 RN 135 (476)
Q Consensus 134 ~~ 135 (476)
--
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 53
No 354
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=0.15 Score=47.75 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=75.9
Q ss_pred HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHH
Q 011845 58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ---GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQAR 134 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 134 (476)
..+....|+..|.++++..|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.++.++...+++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 345667788889999888888888888888888765 46667888888899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCch
Q 011845 135 NLFRQATKCNPKSC 148 (476)
Q Consensus 135 ~~~~~~~~~~p~~~ 148 (476)
.....+....|.+.
T Consensus 466 ~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 466 SCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHHhhcCchhh
Confidence 99888888888554
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.33 E-value=0.34 Score=32.86 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=34.1
Q ss_pred HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 260 EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 260 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
++...+.++|+..++++++..++.+....++-.+..+|...|++.+.+++--.-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777666666655556666666666667666666655443
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.31 E-value=0.12 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
++.++|.+|...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566677777777777777777777654
No 357
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.26 E-value=0.22 Score=46.76 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845 95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA---NRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLF 171 (476)
Q Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 171 (476)
....|+..|.++++..|.....+.+.+.++++. |+.-.|+.-...+++++|....+|+.|++++...+++.+|+.+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 345566666666666666666666655555543 34444555555556666666666666666666666666666665
Q ss_pred HHHHHcCCCc
Q 011845 172 ERAVQASPKN 181 (476)
Q Consensus 172 ~~a~~~~~~~ 181 (476)
..+....|.+
T Consensus 469 ~alq~~~Ptd 478 (758)
T KOG1310|consen 469 WALQMSFPTD 478 (758)
T ss_pred HHHhhcCchh
Confidence 5555555543
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.93 E-value=0.29 Score=35.23 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHcCChhHHHHHHHHHHccCCCCh------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 261 WKEGNLDTARELYERALSIDSTTE------SAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 261 ~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
.+.|+|..|++.+.+.+....... .....+.+++.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777777777777665532221 223345667777888888888888888887663
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.78 E-value=8.4 Score=38.85 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=90.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH---HH---HH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA---LL---EY 227 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la---~~---~~ 227 (476)
+..++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-.......-...+...+.++.. .+++ .. .+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence 34667778888888888766 22222111233333333333222222224444444443221 2222 12 23
Q ss_pred HcCCHHHHHHHHHHHhccC-CCCHH-HHHHHHHHHHHcCCh--------------hHHHHHHHHHHccCCCChhHHHHHH
Q 011845 228 KYSTANLARKLFRRASEID-PRHQP-VWIAWGWMEWKEGNL--------------DTARELYERALSIDSTTESAARCLQ 291 (476)
Q Consensus 228 ~~~~~~~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~--------------~~A~~~~~~a~~~~~~~~~~~~~~~ 291 (476)
...+..+|.++|--+-... |.... .+..+..+....+++ .-.++-..+.+...........+..
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 4567777877776544332 22211 222233333333322 2233333334444545555556666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhhhh-------
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN-----------SVRAEEIRNLYFQQRTE------- 353 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~------- 353 (476)
..|.-....|++++|+..|.-+-+.+.--...-..|+.+...... ...|..+.+.+......
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 677777888888888888775532211111122333444433333 22333333333221110
Q ss_pred ------hcc--hhhhhhhhcccchHHHHHHHHHhccccC
Q 011845 354 ------VVD--DASWVMGFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 354 ------~~~--~~~~~~~~~g~~~~A~~~~~~al~~~p~ 384 (476)
.+. .....++..|++++|++.+++.- +-|.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~-liP~ 536 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD-LIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT--S-S
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Confidence 011 12235567789999999887753 5563
No 360
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.77 E-value=0.13 Score=30.20 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888887764
No 361
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=4.3 Score=37.40 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhcCcCcHHHHHHHHHHHH------------HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc--
Q 011845 63 GKARELFDASTVADKGHIAAWHGWAVLEL------------RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN-- 128 (476)
Q Consensus 63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-- 128 (476)
+++++.=.+.+..+|+...+|...-.++. ++.-+++-+.+...+++.+|++..+|.....++.+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 34555555666666666555553222221 1123444555666666666666666666666666554
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh----ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ----ENNLAARQLFERAVQASPKNRFAWHVWGIFEA 193 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 193 (476)
++..-+++.+++++.+|.+-.+|...=.+.... ....+=+.+..+++..++.+..+|.....++.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 345666666667766666666554433332222 12344455666666666666666665555443
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.71 E-value=4.8 Score=35.84 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhccccCCCCCCC
Q 011845 369 DPALDRIKQLLNLEKSSYKEPS 390 (476)
Q Consensus 369 ~~A~~~~~~al~~~p~~~~~~~ 390 (476)
..|++.+.++++.+|..|.-..
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHH
Confidence 3578889999999998776543
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.68 E-value=0.13 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYA 35 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~ 35 (476)
+.+.+|..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665554
No 364
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=4.3 Score=37.41 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHH------------HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-
Q 011845 97 KKARQLLAKGLKFCGGNEYIYQTLALLE------------AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN- 163 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~- 163 (476)
.++++.=.+.+..+|+...+|...-.++ .+..-.++-+.+...+++.+|++..+|+....++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 3556666666677776665554322222 222356677788888999999999999999998887653
Q ss_pred -HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------cCC-
Q 011845 164 -NLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK------YST- 231 (476)
Q Consensus 164 -~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~- 231 (476)
+..=+.+.+++++.+|.+...|...=.+.... ....+=+++..+++..++.+..+|.....++.. .|+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 57788889999999998877765443333222 234566778888888888888888777666552 231
Q ss_pred -----HHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 011845 232 -----ANLARKLFRRASEIDPRHQPVWIAWGWMEW 261 (476)
Q Consensus 232 -----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (476)
...-.+....++-.+|++..+|+..-+.+.
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 233455566677788988888877544443
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.06 E-value=1.6 Score=35.99 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 011845 130 YEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK----NRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
-++|...|-++-... -++++..+.+|..|. ..+.++|+.++.+++++.+. +++++..++.++..+|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345555555543322 245666666766665 45677777777777776533 3677777777777777777664
No 366
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.01 E-value=1 Score=39.62 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 177 (476)
..++..++..+...|+++.++..+++.+..+|-+...|..+...|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888888888888888888888888888877663
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.9 Score=39.34 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 220 QSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
.++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+..
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3444556677777888888888888888877777777888888888888888888877777777655
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.99 E-value=0.85 Score=40.05 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
...++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888887664
No 369
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=1 Score=38.96 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=30.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 251 (476)
.+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3444444555555555555555555544444555555555555555555554444444443
No 370
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.31 E-value=6.9 Score=33.85 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHc-----cCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHh
Q 011845 267 DTARELYERALS-----IDSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSLN 315 (476)
Q Consensus 267 ~~A~~~~~~a~~-----~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~ 315 (476)
+.|...|++|+. +.|.+|....+..+.+..++ ..|+.++|++..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344445544443 35666655555555555543 36777777776666654
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.18 E-value=0.46 Score=25.77 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 301 GNLSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 301 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
|+.+.|...|++++...|.++.+|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4677888888888888888888888777654
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.04 E-value=0.96 Score=32.53 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=32.9
Q ss_pred HHcCCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 227 YKYSTANLARKLFRRASEIDPR---------HQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
.+.|++..|++.+.+.+..... ...+..++|.++...|++++|+..+++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455555555555544433211 124556677777778888888888888777643
No 373
>PF12854 PPR_1: PPR repeat
Probab=92.00 E-value=0.41 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDA 71 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 71 (476)
.|...|..+...+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3555566666666666666666666654
No 374
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=10 Score=34.96 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=68.3
Q ss_pred HHHhccHHHHHHHHHHHHHcC-CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-CHHHHHHH
Q 011845 158 EMQQENNLAARQLFERAVQAS-PK--------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN-----PR-DPVLLQSL 222 (476)
Q Consensus 158 ~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~~~l 222 (476)
+..+.++.+|..+-+..+..- -. ....|+.+..++...|+...-...+...+... .. .....+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 334577777777666554321 11 13455666666666666555555554443321 11 12234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc--CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 223 ALLEYKYSTANLARKLFRRASEI--DP--RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 223 a~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
-..|...+.++.|.....+..-- .. .....++.+|.+..-+++|..|.+++-+++...|.+
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 56666666666666665554311 11 112344556666666777777777777777776663
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=8.1 Score=33.76 Aligned_cols=283 Identities=11% Similarity=-0.025 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCc--------CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc---c--CCCcHHH
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADK--------GHIAAWHGWAVLELRQGNIKKARQLLAKGLK---F--CGGNEYI 116 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~--~p~~~~~ 116 (476)
..+|.-..+.+++++|+..|.+++...- ....+...++.+|...|++..-.+......+ . .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777889999999999999986521 1235677899999999987655444433221 1 1122222
Q ss_pred HHHHHHHH-HHhccHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHhccHHHHHHHHHHHHHc------CCCcHH
Q 011845 117 YQTLALLE-AKANRYEQARNLFRQATKCNPKSC------ASWIAWSQMEMQQENNLAARQLFERAVQA------SPKNRF 183 (476)
Q Consensus 117 ~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~ 183 (476)
...+...+ .....++.-+..+...++...... ..-..++.++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222111 122344445555555444322111 12345667788888999888887766542 123345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHH
Q 011845 184 AWHVWGIFEANMGFIDKGKKLLKIGHAV-----NPRDPVLL--QSLALLEYKYSTANLARKLFRRASEIDP---RHQPVW 253 (476)
Q Consensus 184 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~ 253 (476)
++..-..+|....+..++...+..+-.. +|....+- ..-|...+...+|.-|..+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 5566667777777777777666655332 33222221 2234555666788888888888876543 223332
Q ss_pred HHHHHH---HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845 254 IAWGWM---EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ--RVGNLSAARRLFRSSLNINSQSYITWMTWA 328 (476)
Q Consensus 254 ~~l~~~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 328 (476)
..+-.+ -...+..++-...+..--.+..-.....+++...+..+. .+.+|..|...|..-+..+|--..-+..+-
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LY 326 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLY 326 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHH
Confidence 222111 112233333333332111111111111233444444442 344677787777776665554333333344
Q ss_pred HHHH
Q 011845 329 QLEE 332 (476)
Q Consensus 329 ~~~~ 332 (476)
..+.
T Consensus 327 D~LL 330 (421)
T COG5159 327 DVLL 330 (421)
T ss_pred HHHH
Confidence 4333
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.69 E-value=0.34 Score=25.02 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 011845 49 WQCWAVLENKLGNIGKARELF 69 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~ 69 (476)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554444
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.65 E-value=2 Score=35.80 Aligned_cols=73 Identities=11% Similarity=-0.067 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVL 296 (476)
Q Consensus 224 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~ 296 (476)
.-+.+.+...+|+...+.-++..|.+......+-.+++-.|++++|..-++-+-++.|+......+|.++..+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456667788888888888888888887777788888888888888888888888888776665555544443
No 378
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=38 Score=40.73 Aligned_cols=116 Identities=13% Similarity=0.227 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHH---HHHHHHHcC-ChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH-QPVWIA---WGWMEWKEG-NLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~---l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
+.+..|.+..+.|-++-++..+.+...+..-. .++... -+.+|.... ....+++..+..--.+-.+......+..
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 44556666677777777777777766553221 122222 233333322 4444444444332222233344566777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEED 333 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 333 (476)
-|....+.|+.++|-..|..|++++...+.+|..+|.....
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 79999999999999999999999998888888888876543
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.52 E-value=1.2 Score=40.89 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCC--------C-----c-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCG--------G-----N-----EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC 148 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p--------~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 148 (476)
|..++++++|..|..-|..++++.. . + ..+...+..||..+++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4455566666666666666655421 1 1 12345677788888888888888888888888877
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 149 ASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 149 ~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
.-+...|.++....+|.+|.+.+.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888887776655443
No 380
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.25 E-value=9.9 Score=33.49 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHH
Q 011845 112 GNEYIYQTLALLEAKANRYEQARNLFR 138 (476)
Q Consensus 112 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 138 (476)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467788888888888887777776663
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.22 E-value=11 Score=33.89 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG 208 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 208 (476)
--++|+.+-.-...+.|..++++-.++.++.+..+...=...=-..+-+...+...|. .+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~--------r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWD--------RALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhh--------HHHHHHHHHHHHHH
Confidence 3567777777778888888888877777665543221000000000111112222332 12235566666666
Q ss_pred HhcCCCCH-HHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 209 HAVNPRDP-VLLQSLALLEYK-----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 209 ~~~~~~~~-~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
+.....-+ ...-.++.++.. .-+|..-..+|+-.....|+ |.+-.+.+.......-...++...+..... |.
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~ 360 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLAR-PR 360 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cc
Confidence 65443222 222223333322 23555566666666666554 344445555555555556666666554443 22
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845 283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 327 (476)
-......+...|.++.++|+.++|...|++++.+.++..+..+..
T Consensus 361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 222222344557788888888888888888888877766544433
No 382
>PF13041 PPR_2: PPR repeat family
Probab=91.05 E-value=1.4 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=7.9
Q ss_pred HHHHHHHhccHHHHHHHHHHH
Q 011845 120 LALLEAKANRYEQARNLFRQA 140 (476)
Q Consensus 120 la~~~~~~g~~~~A~~~~~~~ 140 (476)
+...+.+.|++++|.++|+++
T Consensus 9 li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHH
Confidence 333333333333333333333
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.05 E-value=1.8 Score=29.49 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHH---HHHHHHHHcCCHHHHHHHHH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQ---CWAVLENKLGNIGKARELFD 70 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~ 70 (476)
...|.-++.+.+.++|+..++++++.. ++.+.-+. .+..++...|+|.+.+.+..
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666665544 33333332 23344555555555555443
No 384
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.87 E-value=0.85 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=6.7
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 011845 51 CWAVLENKLGNIGKAREL 68 (476)
Q Consensus 51 ~la~~~~~~g~~~~A~~~ 68 (476)
.+|..+...|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333334444444443
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.52 E-value=1.1 Score=25.35 Aligned_cols=19 Identities=11% Similarity=-0.099 Sum_probs=7.5
Q ss_pred HHHHHHHHHhccHHHHHHH
Q 011845 152 IAWSQMEMQQENNLAARQL 170 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~ 170 (476)
..+|-.+...|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.42 E-value=1.7 Score=39.92 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC-------CCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845 18 GKVLSKQSKVAEARAIYAKGSQAT-------QGEN----------PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 18 a~~~~~~g~~~~A~~~~~~~~~~~-------~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
|..++++++|..|..-|..+++.. .|.. ..+-..+..||.++++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 445566666666666555555432 1111 11223455666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLL 103 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~ 103 (476)
.-+...|.++..+.+|.+|...+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555433
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.05 E-value=12 Score=32.63 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCChHHHHHH
Q 011845 287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------SYITWMTWAQLEEDQGNSVRAEEI 343 (476)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 343 (476)
..+...+|..|+..|++++|.++|+.+...... ...+...+..|....|+.+....+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445556778888888888888888877554322 124556677777777776665543
No 388
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.79 E-value=25 Score=35.83 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhh
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGL 107 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~ 107 (476)
....|..++..|++++|...|-+.+
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3344444555555555555554444
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.73 E-value=15 Score=32.98 Aligned_cols=141 Identities=9% Similarity=-0.091 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
+.....+..+..+-++....+++++|+...++..++.-. .--..+|.++++++++... ..+.........|...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccch
Confidence 344445556666667777777888887777777666532 2345667777777765421 1111111111122111
Q ss_pred HHHHHHHHHHhcCCCchh--HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 132 QARNLFRQATKCNPKSCA--SWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDKGKKLL 205 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 205 (476)
+| ..+.+ .+.. +-..++.+..++|+..+|++.++...+..|-. ..+.-++...+....-|.....++
T Consensus 264 da------~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 264 EA------QLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred hh------hhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111 1222 23456667777777777777777766655522 123334444444444444433333
No 390
>PF12854 PPR_1: PPR repeat
Probab=89.72 E-value=0.92 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKI 207 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~ 207 (476)
..|..+...+.+.|+.++|.+++++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444455555555555555554443
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.65 E-value=2.1 Score=37.35 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
++...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|+++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445578889999999999999999999999999999999999999998888888877654
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.56 E-value=0.93 Score=24.47 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhcCCCchhHHH
Q 011845 131 EQARNLFRQATKCNPKSCASWI 152 (476)
Q Consensus 131 ~~A~~~~~~~~~~~p~~~~~~~ 152 (476)
+.|..+|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3333344444443333333333
No 393
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.48 E-value=0.7 Score=26.50 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQ 39 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 39 (476)
+++..+|.+-...++|++|+.-|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455666666666666666666666654
No 394
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.47 E-value=0.99 Score=25.88 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
++..+|.+-...++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556677777777777777777777654
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.16 E-value=15 Score=32.36 Aligned_cols=27 Identities=7% Similarity=-0.097 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 180 KNRFAWHVWGIFEANMGFIDKGKKLLK 206 (476)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 206 (476)
.++..+..+|..+.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356777777777777777776666553
No 396
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.60 E-value=12 Score=30.44 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=118.6
Q ss_pred CCCchhHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-----HcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 8 PEDGRPYVALGKVLS-KQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-----KLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 8 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
...|+....||..+. -+.+|++|..+|..-...+ ..+..-+.+|..++ ..++...|++.+..+-. .+.+.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~ 106 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQ 106 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHH
Confidence 346777888887764 3678999999998876543 44556666665544 34578899999998866 45677
Q ss_pred HHHHHHHHHHHh-----C--CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHH
Q 011845 82 AWHGWAVLELRQ-----G--NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWI 152 (476)
Q Consensus 82 ~~~~la~~~~~~-----~--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ 152 (476)
+...+|.++..- + +..+|++++.++.... +..+.+.|...|..-. ++ +....| ..+.
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~--- 172 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL--- 172 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---
Confidence 888888777632 2 3778999999997764 5666777777665332 22 222233 1121
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAV 211 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~ 211 (476)
..+..+.-..+.+.|.+.-.++.++. ++.+-.++.+.|..- .+.++|..+-.++.++
T Consensus 173 ~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 173 DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 12344455677888888888887764 344555566655432 3566777776666654
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.59 E-value=2.3 Score=37.14 Aligned_cols=61 Identities=18% Similarity=0.014 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
.+...+..|...|.+.+|+.+.++++..+|-+...+..+..++...|+--.+.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445677778888888888888888888888888888888888888887777777776543
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.19 E-value=17 Score=31.77 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHccCC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845 254 IAWGWMEWKEGNLDTARELYERALSIDS---TTESAARCLQAWGVLEQRVGNLSAARRLFRS 312 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 312 (476)
..+|..|+..|++++|+.+|+.+..... -......++..+..|+...|+.+..+.+.-+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455555555555555555555533211 1122233445555666666665555554433
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.13 E-value=16 Score=31.55 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLEN-KLGNIGKARELFDAST 73 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~ 73 (476)
+..+|.+..+.|+|++.+.++++++...+.-+.+-...+..+|- ..|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 56678888888888888888888887765555555555665552 2344445555555444
No 400
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=22 Score=32.92 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred HHHcCCHHHHHHHHHHHhhc----CcC-----cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-----C-CcHHHHHHH
Q 011845 56 ENKLGNIGKARELFDASTVA----DKG-----HIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-----G-GNEYIYQTL 120 (476)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p-~~~~~~~~l 120 (476)
+....++.+|..+-+..+.. +.. ....|+.+..++...|+...-...+...+... . ........+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34567888888877766532 111 13567777777888888776666665554431 1 112344556
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcC--CC--chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 121 ALLEAKANRYEQARNLFRQATKCN--PK--SCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
-..|...+.++.|.....+..--. .+ .....+.+|.+..-+++|..|.+++-+++...|.+
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 677777888888887776654111 11 13345677888888888888888888888888864
No 401
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.88 E-value=6 Score=33.14 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-+..|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3444555556665555555556555555555555555666666665555555555544
No 402
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.20 E-value=2 Score=25.60 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=12.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 011845 255 AWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
.++..|..+|+.+.|...++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 403
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=15 Score=35.88 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA 99 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 99 (476)
.....|+++.|...+..+ | .+.....+..+..+|-.++|+++ .+ +++-.+ .+..+.|+++.|
T Consensus 595 t~vmrrd~~~a~~vLp~I-----~--k~~rt~va~Fle~~g~~e~AL~~-------s~-D~d~rF---elal~lgrl~iA 656 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI-----P--KEIRTKVAHFLESQGMKEQALEL-------ST-DPDQRF---ELALKLGRLDIA 656 (794)
T ss_pred HHhhhccccccccccccC-----c--hhhhhhHHhHhhhccchHhhhhc-------CC-Chhhhh---hhhhhcCcHHHH
Confidence 344467777776655443 2 33445566667777776666543 22 222222 233567788888
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
.++..++ ++..-|..||.+....|++..|.+++.++..
T Consensus 657 ~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 657 FDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 7766554 4566788888888888888888888877643
No 404
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=24 Score=31.82 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc--CcCc--------HHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVA--DKGH--------IAAWHGWAVLELRQGNIKKARQLLAKG 106 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (476)
...+.......+.++++..|.+++.. .|.+ ......++..+.+.|+..+-.......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34455556667778888888888763 1111 245567788888888877666655544
No 405
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.45 E-value=1.7 Score=25.91 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 50 QCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
+.+|..|..+|+.+.|..+++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3466667777777777777776664
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.28 E-value=25 Score=31.71 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 62 IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 62 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
-++|+.+-.-+..+-|..++++-.++.+.+...+...=...=-..+-+...+... ...+-.+++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHHHHH
Confidence 4577777777777888888887777766654332211000000000011112222 22334556666666666
Q ss_pred hcCC-CchhHHHHHHHHHHH-----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Q 011845 142 KCNP-KSCASWIAWSQMEMQ-----QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV--NP 213 (476)
Q Consensus 142 ~~~p-~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 213 (476)
.... .-....-.++.++.. .-+|..-..+|.-.....|+. .+-.+.+.......-.+.++...+..... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 5542 222222222333222 235555556666655555543 33344445555555556666666555443 12
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 011845 214 RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA 255 (476)
Q Consensus 214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 255 (476)
.....+...|.++.+.|+.++|...|++++.+.++..+..+.
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 233455566777777777777777777777777666554443
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.98 E-value=17 Score=34.06 Aligned_cols=59 Identities=10% Similarity=-0.113 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChH--HHHHH--HHHHHHcCCHHHHHHHHHHHhh
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPY--IWQCW--AVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~~~~ 74 (476)
...+..++..++|..|...|..+...- |.+.. .+..+ |..+...-++.+|.+.++..+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl-~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRL-PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666777777777777766542 22222 22222 3333456667777777776654
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.86 E-value=3.9 Score=36.45 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011845 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK 228 (476)
Q Consensus 167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 228 (476)
|..+|.+|..+.|.+...++.+|.+....|+.-.|+-.|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555554433334455555544444
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.29 E-value=22 Score=33.43 Aligned_cols=58 Identities=17% Similarity=0.023 Sum_probs=31.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcCcHH--HHHHH--HHHHHHhCCHHHHHHHHHHhhcc
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKGHIA--AWHGW--AVLELRQGNIKKARQLLAKGLKF 109 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~~~~ 109 (476)
.+..++..++|..|.+++..+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345556677777777777776654222222 23333 33334556666777776665543
No 410
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.17 E-value=48 Score=33.98 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
.++.+..-|+-|+.+.+.- ..++..-..++..+|..++..|++++|...|-+.+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4555666777777766654 222122345666777777778888888877777764
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.50 E-value=12 Score=34.98 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh--------hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 011845 49 WQCWAVLENKLGNIGKARELFDAST--------VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGL 107 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 107 (476)
...+.++++-+|||..|++.++.+- ...+-+...++..|-+|+..++|.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888999999999987642 1112334567788888888888888888887765
No 412
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.43 E-value=5.2 Score=35.61 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 65 ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 65 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
|+.+|.+|....|.+...+..+|.++...|+.-.|+-.|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666655555554433334455555555444
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=83.94 E-value=1.9 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGS 38 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~ 38 (476)
|..+-..|.+.|++++|.++|+++.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445556666666666666666554
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=60 Score=34.03 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
..|...+.++.+.|+.++|+..|-..+
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345555666666666666666655444
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.94 E-value=3.3 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQA 40 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 40 (476)
|..+...|.+.|++++|.++|.++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445555666666666666666665543
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.61 E-value=3.3 Score=38.69 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc-------cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQ-------ATQGENPYIWQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
...+.+++.-.|+|..|++.++.+-- ..++....+++.+|-+|+.+++|.+|++.|..++.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999887621 11344567889999999999999999999998863
No 417
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.31 E-value=2.5 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
|..+...+.+.|++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44455556666666666666665543
No 418
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.23 E-value=20 Score=27.45 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=32.1
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
+...+|+-++-.+++....+....++..+..+|..|.+.|+..++-+++.++.+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34456666666666666665445566777777777777777777777777776543
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.85 E-value=78 Score=33.23 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
+..|+.+|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45667777777777777777777665
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.82 E-value=9.4 Score=38.16 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHH---HcCCHHHHHHHHHHHhccC-CCCHH
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPV------LLQSLALLEY---KYSTANLARKLFRRASEID-PRHQP 251 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~---~~~~~~~A~~~~~~~~~~~-~~~~~ 251 (476)
+++..++...|....+|+..+++.+..-.+ |+.-. +.+.++-++. +-|+-++|+...-.+++.. |-.++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 556666777777777888777766654433 32211 1122222222 3466677777777666653 34455
Q ss_pred HHHHHHHHHHH---------cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCC
Q 011845 252 VWIAWGWMEWK---------EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGN 302 (476)
Q Consensus 252 ~~~~l~~~~~~---------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (476)
.+...|.+|.. .+..+.|+++|+++++..|..... .+++.++...|+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG----IN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG----INLATLLRAAGE 335 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc----ccHHHHHHHhhh
Confidence 66666666543 344567788888888887765332 344555555553
No 421
>PRK12798 chemotaxis protein; Reviewed
Probab=80.79 E-value=50 Score=30.98 Aligned_cols=216 Identities=10% Similarity=-0.016 Sum_probs=141.0
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CcCcHHHHHHHHH-HHHHhCCHHHH
Q 011845 22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVA-DKGHIAAWHGWAV-LELRQGNIKKA 99 (476)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~-~~~~~~~~~~A 99 (476)
+.-|+..--..++ ..+...+.+.-..-|...+-.|+-.+|.+.+..+-.. .|.....+..|.. ..+...+..+|
T Consensus 92 lSGGnP~vlr~L~----~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 92 LSGGNPATLRKLL----ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hcCCCHHHHHHHH----HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 3455654433333 3333345555556677777889999999998876422 2333444554444 34566789999
Q ss_pred HHHHHHhhccCCCcH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHhccHHHHHHHHHH
Q 011845 100 RQLLAKGLKFCGGNE---YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 100 ~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
++.|+.+--..|... .++..-..+....|+.+++..+-.+.+....+++. .+...+......++-..- ..+..
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~ 246 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVE 246 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHH
Confidence 999999988888763 35555566678899999999888888887766654 334444444444432222 33555
Q ss_pred HHHc-CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 174 AVQA-SPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR----DPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 174 a~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
.+.. +|. ...+|..++..-...|+.+-|.-.-++++.+... ...+....+....-..+++++...+...
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 5544 443 3578888999999999999999999999887533 2334444555555666788887777654
No 422
>PRK09687 putative lyase; Provisional
Probab=80.26 E-value=43 Score=29.91 Aligned_cols=217 Identities=8% Similarity=-0.100 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH----HHHHHHHHHHHHcCCCcHHHHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN----LAARQLFERAVQASPKNRFAWHVW 188 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----~~A~~~~~~a~~~~~~~~~~~~~l 188 (476)
+..+....+..+...|. +++...+.+++. ..++......+.++.+.|.. .++...+...+..+|+ +.+....
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 44445555555555553 233333333322 22445555555555555542 3455555554444443 2233222
Q ss_pred HHHHHHcCC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 011845 189 GIFEANMGF-----IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE 263 (476)
Q Consensus 189 ~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (476)
+..+...+. ...+...+..++. ..++.+....+..+...++ .+++..+-.+++. + ++.+....+..+-..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-P-NGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-C-CHHHHHHHHHHHhcC
Confidence 222222221 1122232222221 1144555555555545444 4555555555542 1 223333222222222
Q ss_pred C-ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845 264 G-NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 264 g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
+ ....+...+..++. +++... -......+.+.|+ ..|+..+-+.++... .....+..+...|+. +|..
T Consensus 187 ~~~~~~~~~~L~~~L~-D~~~~V----R~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ-DKNEEI----RIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCHHHHHHHHHHhc-CCChHH----HHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHH
Confidence 1 13355555555552 222211 1111222333344 455555555554311 233444444455543 3444
Q ss_pred HHHHHHh
Q 011845 343 IRNLYFQ 349 (476)
Q Consensus 343 ~~~~~~~ 349 (476)
.+..+..
T Consensus 256 ~L~~l~~ 262 (280)
T PRK09687 256 VLDTLLY 262 (280)
T ss_pred HHHHHHh
Confidence 4444443
No 423
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.92 E-value=65 Score=31.78 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
.+.|+++.|.++..++ ++..-|..||.+....|++..|.+++.++.
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555544332 334555666666666666666666666554
No 424
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.91 E-value=26 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+.....+.+++.++..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444443333334444444443
No 425
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.80 E-value=58 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
|.-|.+.|+...|..+|.+++...
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHh
Confidence 667777778888888777777654
No 426
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.44 E-value=48 Score=33.57 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------HHHHHHHHHHH---HhCCHHHHHHHHHHhhccC-CCcHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI------AAWHGWAVLEL---RQGNIKKARQLLAKGLKFC-GGNEY 115 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~-p~~~~ 115 (476)
+++...+...|....+|+.-+++.+.+-.+ |+.. ...+.++-++- +-|+-++|+...-.+++.. |-.++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455556666666677777666666654333 3211 11112222222 3356667776666666543 33445
Q ss_pred HHHHHHHHHHH---------hccHHHHHHHHHHHHhcCCC
Q 011845 116 IYQTLALLEAK---------ANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 116 ~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~ 146 (476)
.+...|.+|.. .+..+.|+++|+++++..|.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 55555555432 34566677777777777664
No 427
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=4.3 Score=36.60 Aligned_cols=124 Identities=14% Similarity=0.035 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845 18 GKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK 97 (476)
Q Consensus 18 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 97 (476)
+.-.+..+++..|..-|.++...... -+ ..+..+... +.......-......++.+-.+.+.+.
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~-~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSE-QS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcc-cc------------ccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 44567778888888888877653311 00 000000000 011111111233334666666777777
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845 98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM 157 (476)
Q Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 157 (476)
.|+.....++..++....+++..+..+....++++|++.+..+....|++......+...
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 777666666666666667777777777777777777777777777777766554444433
No 428
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.31 E-value=27 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 011845 301 GNLSAARRLFRSSLNINSQSYITWMTWAQLEE 332 (476)
Q Consensus 301 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 332 (476)
++++.|++++.+ +.+++.|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 566667666665 335566666665544
No 429
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.12 E-value=44 Score=29.36 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCCCHHHHHHHHHHH------HHcCChhHHHH
Q 011845 200 KGKKLLKIGHAVNPRDPVLLQSLALLEYKY--STANLARKLFRRASEIDPRHQPVWIAWGWME------WKEGNLDTARE 271 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~g~~~~A~~ 271 (476)
.-+..+..+++.+|.+..+|...-.++... .++..-..+.++.++.++.+..+|...-.+. .....+..-.+
T Consensus 92 neld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e 171 (328)
T COG5536 92 NELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE 171 (328)
T ss_pred cHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH
Confidence 334456666666777766666665555544 4456666667777777777666665433322 22223333344
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 272 LYERALSIDSTTESAARCLQAWGVLEQRVGN------LSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
+-..++..++.+..++.-...+-......|+ +++-+++...++-.+|++..+|..+-.+.
T Consensus 172 ytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 172 YTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 4455556666666554333222333333443 34445555556666788877776555443
No 430
>PRK12798 chemotaxis protein; Reviewed
Probab=78.70 E-value=59 Score=30.55 Aligned_cols=219 Identities=16% Similarity=0.027 Sum_probs=140.8
Q ss_pred HHHHHH-cCCHHHHHHHHHHHhhcCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHH-HHHHhc
Q 011845 53 AVLENK-LGNIGKARELFDASTVADK-GHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLAL-LEAKAN 128 (476)
Q Consensus 53 a~~~~~-~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~-~~~~~g 128 (476)
+.+|.- -|+..-.. .++..++ .+.+.-..-|..-+-.|+..++.+.+..+-... |...-.+..|.. ......
T Consensus 87 a~iy~lSGGnP~vlr----~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 87 ALIYLLSGGNPATLR----KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred HHhhHhcCCCHHHHH----HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhccc
Confidence 344444 45554333 3333333 245566667777778999999999887765332 333333443333 344567
Q ss_pred cHHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHcCCHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCA---SWIAWSQMEMQQENNLAARQLFERAVQASPKNR---FAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~ 202 (476)
+..+|+.+|+.+--..|.... ++..-..+..+.|+.+++..+-.+.+.....++ ..+-.++......++-.. .
T Consensus 163 dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~ 241 (421)
T PRK12798 163 DPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-D 241 (421)
T ss_pred CHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-H
Confidence 899999999999988887632 444555566789999999998888888776664 334444445544443222 2
Q ss_pred HHHHHHHhc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 203 KLLKIGHAV-NPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPR----HQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 203 ~~~~~~~~~-~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
..+..++.. +|. ...+|..++..-...|+.+-|.-.-++++.+... ...+.+..+....-..++++|++.+...
T Consensus 242 ~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 242 ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 335555554 343 2568889999999999999999999999887532 2334444454555567788887776654
No 431
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=78.21 E-value=0.68 Score=45.47 Aligned_cols=97 Identities=15% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh--hcCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHhh--ccCC-CcHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDAST--VADKG-HIAAWHGWAVLELRQGNIKKARQLLAKGL--KFCG-GNEYIYQT 119 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~p-~~~~~~~~ 119 (476)
.......+..+...|++..|..++.++- .+.+. ........+.+....|++..|+..+...- .+.+ .....+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 3444555677788888888888887765 22222 23445567777778888888888776411 1111 12234556
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 011845 120 LALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 120 la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
.+.++...|++-+|...+-.+-.
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp -----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Confidence 67777777777777666554433
No 432
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.05 E-value=66 Score=30.76 Aligned_cols=28 Identities=14% Similarity=-0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccC
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFC 110 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 110 (476)
...+|.+.+..|+|+-|...|+.+.+-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3468888888888888888888776543
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.75 E-value=5.6 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
|..+...+.+.|++++|.++|.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666666666666666543
No 434
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=76.28 E-value=59 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=22.2
Q ss_pred HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 196 (476)
..+++.+.++..++.+..+|--.+..+..+.++.+.|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 4455566666666666665555555566666666666
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=75.93 E-value=6.6 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGS 38 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~ 38 (476)
|..+..++.+.|+++.|..+|+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 436
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.88 E-value=44 Score=30.01 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hcCcCcHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGE------NPYIWQCWAVLENKLGNIGKARELFDAST--VADKGHIAAWH 84 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~ 84 (476)
....+|.+|.+.++|..|...+.-+-....+. ....+..+|.+|...++..+|..+..++- ..+..+.....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 45677788888888888877776552221010 12344566777777777777766666542 22223333332
Q ss_pred ----HHHHHHHHhCCHHHHHHHHHH
Q 011845 85 ----GWAVLELRQGNIKKARQLLAK 105 (476)
Q Consensus 85 ----~la~~~~~~~~~~~A~~~~~~ 105 (476)
..|+++-..++|-+|...|-+
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444555555444443
No 437
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.52 E-value=98 Score=31.45 Aligned_cols=171 Identities=13% Similarity=0.020 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH--HHHHHHHHH---
Q 011845 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV--WIAWGWMEW--- 261 (476)
Q Consensus 187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~--- 261 (476)
.+..++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-..-....-...+...+.++.. +..+...|.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 445677789999999999876 22232222333333433333322222225555555544322 112222232
Q ss_pred HcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHH--------------HHHHHHHHHhhCCCcH---HHH
Q 011845 262 KEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA--------------ARRLFRSSLNINSQSY---ITW 324 (476)
Q Consensus 262 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------------A~~~~~~al~~~p~~~---~~~ 324 (476)
...+..+|+++|--+-... +......++..+..+....++++. .++-..+.+....... .+.
T Consensus 339 ~~td~~~Al~Y~~li~~~~-~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFK-DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS--SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 4568888888886554432 211112233334444444443332 2222222333332222 355
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhc
Q 011845 325 MTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLN 380 (476)
Q Consensus 325 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 380 (476)
...|.-....|++++|+.+|.. .|+++.++..+.+.+.
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~L------------------a~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHL------------------AEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH------------------TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------------------HhhHHHHHHHHHHHHH
Confidence 6667777888888888887654 3678888888777766
No 438
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=75.23 E-value=0.92 Score=44.58 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hcCcC-cHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQ--ATQGENPYIWQCWAVLENKLGNIGKARELFDAST--VADKG-HIAAWH 84 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~p~-~~~~~~ 84 (476)
-...++.-+..++..|++..|..++.++.. ..+..........|.+....|+++.|+..+...- ...+. ....+.
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~ 102 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHH
Confidence 345566678899999999999999998862 2223344556677899999999999999998521 12111 124455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGG-------NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM 157 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 157 (476)
..+.++...|++-+|...+-.+-..-++ ...+|..+..+ .. ..+.............|..|+.+
T Consensus 103 l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l-------~~--~~L~~~~~~~~~~l~GWl~La~i 173 (536)
T PF04348_consen 103 LRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQL-------PP--EQLQQLRRASEPDLQGWLELALI 173 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcC-------CH--HHHHhhhcCCCHHHHHHHHHHHH
Confidence 6788899999988888766554443321 11233322222 11 01222222223334568888888
Q ss_pred HHHh-ccHHHHHHHHHHHHHcCCCcHH
Q 011845 158 EMQQ-ENNLAARQLFERAVQASPKNRF 183 (476)
Q Consensus 158 ~~~~-~~~~~A~~~~~~a~~~~~~~~~ 183 (476)
+... .+...-...+.......|+++-
T Consensus 174 ~~~~~~~p~~l~~al~~Wq~~yP~HPA 200 (536)
T PF04348_consen 174 YRQYQQDPAQLKQALNQWQQRYPNHPA 200 (536)
T ss_dssp ---------------------------
T ss_pred HHhccCCHHHHHHHHHHHHHhCcCCcc
Confidence 7763 3433334444444555666653
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.16 E-value=35 Score=26.11 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 011845 305 AARRLFRSSLNI--NSQSYITWMTWAQLEEDQGNSVRAEEIRNLY 347 (476)
Q Consensus 305 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 347 (476)
.+.++|+.+... .-..+..|...|.++...|++.+|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 677777766553 4556677777888888888888888777654
No 440
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=75.04 E-value=8.2 Score=20.86 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
.|..+..++.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555556666666666666665543
No 441
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.50 E-value=26 Score=27.39 Aligned_cols=48 Identities=21% Similarity=-0.030 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
.....+...+..|++.-|..+...++..+|++..+....+.++..+|.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555555443
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=67 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
.+++...+..|++.|+-+.|.+.+.+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45666666666666666666666655543
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.30 E-value=36 Score=26.62 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
.+.....+.-....|++.-|.++.+.++..+|++..+....+.++.+.|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445556666677777788888888877778777777777777766654
No 444
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=72.51 E-value=10 Score=20.69 Aligned_cols=28 Identities=14% Similarity=0.528 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845 302 NLSAARRLFRSSLNINSQSYITWMTWAQL 330 (476)
Q Consensus 302 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 330 (476)
.++.|..+|++.+...|+ +..|..+|..
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 456677777777766654 4556555543
No 445
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.47 E-value=69 Score=27.88 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=12.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 119 TLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 119 ~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
.++.+..+.++|++.+...+++++.
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 3444444555555555555555443
No 446
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.28 E-value=52 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
.+++..-|.+.++.|+-++|.++++.+...
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 444555589999999999999999987653
No 447
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.36 E-value=8.5 Score=34.79 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH 186 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 186 (476)
...++.+-...+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++..+..
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 3445555556666666666655555555666666666666666666666666666666666666654433
No 448
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.11 E-value=1.7e+02 Score=31.77 Aligned_cols=109 Identities=17% Similarity=0.046 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH---HHHH
Q 011845 252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW---MTWA 328 (476)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~ 328 (476)
++...|.-+...+.+++|.-.|+.+-++ ..--.+|...|++.+|.....+. .+.-.... ..|+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL-----------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH-----------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHH
Confidence 4444555556666666666655554321 11124455556665555554432 23323333 6777
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHH
Q 011845 329 QLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQL 378 (476)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 378 (476)
.-+...+++-+|..+...+.+...+.. ..+.....+++|+..-..+
T Consensus 1007 s~L~e~~kh~eAa~il~e~~sd~~~av----~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLSDPEEAV----ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhcCHHHHH----HHHhhHhHHHHHHHHHHhc
Confidence 788888999888888777766433322 2334444566666554433
No 449
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.60 E-value=74 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.019 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
.+.|...+.+++.++|....+...+..+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 345666666666666666666666666655555554
No 450
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=67.34 E-value=62 Score=32.09 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=49.2
Q ss_pred HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845 58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLF 137 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 137 (476)
+....+.+....+.-+..........+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4445555555555555444444455556666666677777777777777766665 55566666666677666666666
Q ss_pred H
Q 011845 138 R 138 (476)
Q Consensus 138 ~ 138 (476)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 451
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=66.76 E-value=94 Score=27.63 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
.-...++.-++..|++..++..+|..+....=--.....- +......|..... -.+.|...+.+++.+
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l 128 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIEL 128 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 3556666777778888888887777765432111110000 0111222322222 246799999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKL 238 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~ 238 (476)
+|....+...+..+-...|.++=-..+
T Consensus 129 ~pr~~~A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 129 SPRPVAAAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred CCCchHHHHHHHHHHhhcCCchHHHHH
Confidence 999999998888888888887643333
No 452
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.60 E-value=79 Score=31.41 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHH
Q 011845 22 SKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQ 101 (476)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 101 (476)
.++...+.+....+.-+... ..+....+..+..+-..|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTE-ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHhhHHHHHHHHHHhCCcc-chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 34566777777777665444 445566677788888999999999999999999887 778899999999999999999
Q ss_pred HHHH
Q 011845 102 LLAK 105 (476)
Q Consensus 102 ~~~~ 105 (476)
++++
T Consensus 96 ~~~~ 99 (578)
T PRK15490 96 ILKK 99 (578)
T ss_pred HHHH
Confidence 9884
No 453
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.34 E-value=2e+02 Score=31.22 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------CCC----HHHHHHHHHHHHHcCCHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVN-------------------------PRD----PVLLQSLALLEYKYSTAN 233 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------~~~----~~~~~~la~~~~~~~~~~ 233 (476)
...+.+|.+|...|+..+|+.+|.++..-. |.. ...|....+++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 344566777778888888888887775311 111 112334456677778888
Q ss_pred HHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHH----
Q 011845 234 LARKLFRRASEIDPRH----QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA---- 305 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---- 305 (476)
.++++-..|++.-|++ +.....+-.-+...|.+-+|... +-.+|+......++..+..++++.|..+.
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 8888888888765443 23444455556677888877643 44577777667788888888888887543
Q ss_pred --------HHH-HHHHHHhhCCCcH-HHHHHHHHHHHHcCChHHHHHH-HHHHHh
Q 011845 306 --------ARR-LFRSSLNINSQSY-ITWMTWAQLEEDQGNSVRAEEI-RNLYFQ 349 (476)
Q Consensus 306 --------A~~-~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 349 (476)
-.. +++.+-...|-.. ..+..|-..+...+++.+|..+ |+.+..
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 222 3333333333332 3445556677788898887655 444444
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.16 E-value=12 Score=25.42 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=9.8
Q ss_pred HcCCHHHHHHHHHHHhh
Q 011845 58 KLGNIGKARELFDASTV 74 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~ 74 (476)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34566666666666553
No 455
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.34 E-value=93 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhh-----CCCcHH---HHHHHHHHHH-HcCChHHHHHHHHHHHhhhh
Q 011845 303 LSAARRLFRSSLNI-----NSQSYI---TWMTWAQLEE-DQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 303 ~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~ 352 (476)
.+.|.+.|+.|+++ .|.+|. ...+++.++. -.++.++|..+.+.++....
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45777888877754 466663 3344444444 46899999988777766443
No 456
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=64.41 E-value=1.9e+02 Score=30.34 Aligned_cols=215 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred CcccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH
Q 011845 1 MKCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 1 l~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
++..-..|+- ..+-.++--|...|+.+.|- +|.-+--..-|.....+..+...+...++.+.+. ...+
T Consensus 16 ~e~~gi~PnR-vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNR-VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLA 83 (1088)
T ss_pred HHHhcCCCch-hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCch
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
++|..+-..|...|+..- .+.+++ -+..+...+...|.-..-..++.+ +...|.......+.......
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k-~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ----------DLESINQSFSDHGVGSPERWFLMK-IHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhh-cccCcccchhHHHHHHHHHH
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
.|-++.+++.+...-....+.+...+ +-..-.....+++-...+....+ .-++..+...-.+-...|+.+-|..++.
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vf-Lrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVF-LRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHH-HHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHH
Q ss_pred HH
Q 011845 241 RA 242 (476)
Q Consensus 241 ~~ 242 (476)
.+
T Consensus 229 em 230 (1088)
T KOG4318|consen 229 EM 230 (1088)
T ss_pred HH
No 457
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.10 E-value=55 Score=24.05 Aligned_cols=76 Identities=9% Similarity=-0.207 Sum_probs=31.3
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
....++|..+.+-.-.. +...... ..-....+...|+|++| +... .....++.--.++.+..+.|-..++..
T Consensus 19 ~HcH~EA~tIa~wL~~~-~~~~E~v--~lIr~~sLmNrG~Yq~A---Ll~~--~~~~~pdL~p~~AL~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQE-GEMEEVV--ALIRLSSLMNRGDYQEA---LLLP--QCHCYPDLEPWAALCAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHT-TTTHHHH--HHHHHHHHHHTT-HHHH---HHHH--TTS--GGGHHHHHHHHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CcHHHHH--HHHHHHHHHhhHHHHHH---HHhc--ccCCCccHHHHHHHHHHhhccHHHHHH
Confidence 34455665555433332 2222221 11224455666666666 2111 222233333344555556666555555
Q ss_pred HHHH
Q 011845 343 IRNL 346 (476)
Q Consensus 343 ~~~~ 346 (476)
.+.+
T Consensus 91 ~l~r 94 (116)
T PF09477_consen 91 RLTR 94 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 458
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=1.8e+02 Score=29.79 Aligned_cols=49 Identities=6% Similarity=-0.029 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHhhccCC-C----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 011845 24 QSKVAEARAIYAKGSQATQ-G----ENPYIWQCWAVLENKLGNIGKARELFDASTV 74 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 74 (476)
.|+..+|.+++.-.+-... + ....+++.+|.++...|+- ..+++...+.
T Consensus 370 ~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk 423 (929)
T KOG2062|consen 370 RGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLK 423 (929)
T ss_pred ccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHH
Confidence 3555555555555543311 1 1123445555554444433 4444444443
No 459
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.24 E-value=1.4e+02 Score=28.33 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcc
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNIN---SQSY--ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVD 356 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 356 (476)
.+..++.++.+.|++++|.+.+.-.+... |..+ .+...+-..-....+..+|+.+++.+.........
T Consensus 524 ~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 524 SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 35666777888888888888887776543 3333 33445555556677888888887777554443333
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.00 E-value=16 Score=24.81 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=8.1
Q ss_pred hccHHHHHHHHHHHHh
Q 011845 127 ANRYEQARNLFRQATK 142 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~ 142 (476)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3455555555555544
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.81 E-value=31 Score=28.68 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
.++..++.++..| ++.++..++.++...|+.++|.....++....|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444444 345555555555555555555555555555555
No 462
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.39 E-value=2.4e+02 Score=30.71 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----------------------------hhHHHHHHHHHHHhccHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKS-----------------------------CASWIAWSQMEMQQENNLA 166 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----------------------------~~~~~~la~~~~~~~~~~~ 166 (476)
..+.+|.+|...|...+|+.+|.++..-.... ...|....+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 34556666666777777777776664321110 1123334455666667777
Q ss_pred HHHHHHHHHHcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHH------
Q 011845 167 ARQLFERAVQASPKN----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD---PVLLQSLALLEYKYSTAN------ 233 (476)
Q Consensus 167 A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~------ 233 (476)
+.+..-+|++.-|++ +.....+-..+...|.+-+|...+- .+|+. ...+..+..+++..|+++
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 777777777654433 2333444444556667766665432 34543 224555666666666653
Q ss_pred ------HHHH-HHHHHhccCCCC-HHHHHHHHHHHHHcCChhHHH-HHHHHHHccCCCC
Q 011845 234 ------LARK-LFRRASEIDPRH-QPVWIAWGWMEWKEGNLDTAR-ELYERALSIDSTT 283 (476)
Q Consensus 234 ------~A~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~ 283 (476)
+-.. +++.+-...|-. ...|..|--.+...+++.+|- ..|+.+..+..+.
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~ 1136 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESET 1136 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccc
Confidence 2223 333443333322 233333444555677777664 4566666654433
No 463
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=62.16 E-value=2.4e+02 Score=30.70 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE 297 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~ 297 (476)
++..+|..+.....+++|.-.|+.+-+.. .--.+|...|++.+|+....+. .+........-..++.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------kAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKLE--------KALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccHH--------HHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 45556666666777777766666543221 1123444556666655544432 233322222224556677
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 011845 298 QRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEI 343 (476)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 343 (476)
...+++-+|.++....+. +|... ..++.+...|++|..+
T Consensus 1010 ~e~~kh~eAa~il~e~~s-d~~~a------v~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS-DPEEA------VALLCKAKEWEEALRV 1048 (1265)
T ss_pred HHcccchhHHHHHHHHhc-CHHHH------HHHHhhHhHHHHHHHH
Confidence 788888888887776653 22222 2234455566666654
No 464
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.75 E-value=29 Score=28.86 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845 215 DPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247 (476)
Q Consensus 215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 247 (476)
++.++..++.++...|+.++|.....++....|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444444455555555444444444444
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.67 E-value=13 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHhhCCCcH
Q 011845 286 AARCLQAWGVLEQ---------RVGNLSAARRLFRSSLNINSQSY 321 (476)
Q Consensus 286 ~~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 321 (476)
...++...|..+. ..++...|..++++++.++|+..
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 3556666677763 45678899999999999998754
No 466
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=2e+02 Score=29.57 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=48.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGE--NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI 96 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 96 (476)
.-+++.+.|++|+..-+...... +. -..++..+..-+.-.|++++|-...-+++. ++...|......+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~-~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNE-ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCc-cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhcccccc
Confidence 34566788999998887765443 32 234455555666778899988888777764 4555666655555555554
Q ss_pred H
Q 011845 97 K 97 (476)
Q Consensus 97 ~ 97 (476)
.
T Consensus 440 ~ 440 (846)
T KOG2066|consen 440 T 440 (846)
T ss_pred c
Confidence 3
No 467
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=59.11 E-value=25 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=15.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 011845 326 TWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 326 ~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
..|.-+-+.|++++|+..|+.+++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445567888888877665554
No 468
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=59.05 E-value=1.4e+02 Score=27.03 Aligned_cols=190 Identities=9% Similarity=-0.055 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHhhc----cCCCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 011845 13 PYVALGKVLSKQS-KVAEARAIYAKGSQ----ATQGE-----------NPYIWQCWAVLENKLGNIGKARELFDASTVAD 76 (476)
Q Consensus 13 ~~~~la~~~~~~g-~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 76 (476)
....++..+..++ .+..+..+.+.++- .-||. ..+....+-..+ ..+++.+.++..++.+..+
T Consensus 51 ~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~ 129 (301)
T TIGR03362 51 TLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVADYQELL-AQADWAALLQRVEQSLSLA 129 (301)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhC
Confidence 3445566555554 45666666666542 22222 223333333333 6678889999999999888
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhh----ccCCCcHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-------
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGL----KFCGGNEYIYQTLALLEAKANR---YEQARNLFRQATK------- 142 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~------- 142 (476)
|--.+..+..+.++.+.|. +.+...+...+ ...|.-.... +..|- -++...++.....
T Consensus 130 pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~-------F~DGtPFad~~T~~WL~~~~~~~~~~~~ 201 (301)
T TIGR03362 130 PFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELK-------FSDGTPFADDETRAWLAQHATRSNAASV 201 (301)
T ss_pred chhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcc-------cCCCCCCCCHHHHHHHHhcccccccccc
Confidence 8888888899999999994 44444443332 2223211100 00000 0011111111000
Q ss_pred ----cCC--CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 143 ----CNP--KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---RFAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 143 ----~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
..+ .+......-+..+...+..+.|+..++..+...+.. ......++.++...|..+-|...|....+.
T Consensus 202 ~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 202 APVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred cccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 111222233666778889999999999765543322 344567788999999999999999887654
No 469
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=2.2e+02 Score=29.21 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=51.9
Q ss_pred HHHHHHhcCCH-----HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--c----CcHHHHHH
Q 011845 17 LGKVLSKQSKV-----AEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD--K----GHIAAWHG 85 (476)
Q Consensus 17 la~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p----~~~~~~~~ 85 (476)
+++.++..|-. ..=+.++.++.... .-.+--.+|.+ ..|+..+|.+++.-.+-.. + ....+++.
T Consensus 328 iAN~fMh~GTT~D~FlR~NL~WlskAtNWa---KFtAtAsLGvI--H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyA 402 (929)
T KOG2062|consen 328 IANAFMHAGTTSDTFLRNNLDWLSKATNWA---KFTATASLGVI--HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYA 402 (929)
T ss_pred HHHHHHhcCCcchHHHHhchhHHhhcchHh---hhhhhhhccee--eccccchHHHHhhhhCCccCCCCCCccccchhhh
Confidence 45666665532 33345566653322 12223334444 4788888888888877432 1 12357888
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
+|.++...|+- ..+++...++...
T Consensus 403 lGLIhA~hG~~--~~~yL~~~Lk~~~ 426 (929)
T KOG2062|consen 403 LGLIHANHGRG--ITDYLLQQLKTAE 426 (929)
T ss_pred hhccccCcCcc--HHHHHHHHHHhcc
Confidence 88888777765 7777777776543
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=55.99 E-value=1.8e+02 Score=27.32 Aligned_cols=55 Identities=9% Similarity=-0.171 Sum_probs=36.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCW--AVLENKLGNIGKARELFDA 71 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 71 (476)
.+..+++.++|..|...|..+.....+.. ...+..+ |..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45577888999999999999887642211 1223333 3444567788888888875
No 471
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.40 E-value=1.6e+02 Score=26.63 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCchhHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFC-GG------NEYIYQTLALLEAKANRYEQARNLFRQATK--CNPKSCASW 151 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 151 (476)
.....+|.+|.+.++|..|-..+.-.-... +. -...+..+|.+|...++..+|..+..++-- .+..+....
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 345577888888888887777665432211 10 123566777777777777777777766532 223333332
Q ss_pred ----HHHHHHHHHhccHHHHHHHHHHH
Q 011845 152 ----IAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 152 ----~~la~~~~~~~~~~~A~~~~~~a 174 (476)
...|+++-..+++-+|...|-+.
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444555665555555443
No 472
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=54.63 E-value=35 Score=23.21 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
+...+.-+.+.|++.+|+.+|+++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445556666777766666666554
No 473
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.52 E-value=57 Score=33.17 Aligned_cols=102 Identities=15% Similarity=-0.074 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC---CChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQG---ENPYIWQCWAVLENK--LGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
-+..+++.+++.+|.--|..++...|. .........+.++.. .|++..++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 356667777888887767777666532 234455566666654 568889998888889888998889988889999
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQ 118 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (476)
..+.++-|++.+.-.....|.+..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 888888898887777788888754433
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.39 E-value=96 Score=23.70 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
.+..|...|..+...|++.+|.++|+.
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444444444444444443
No 475
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=53.97 E-value=0.92 Score=35.67 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKK 98 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 98 (476)
..+...+.+.....+++.++......++.....++.+|.+.+.+++...+++..-..++ ...+....+.|-+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~------~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDL------DKALRLCEKHGLYEE 88 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-C------THHHHHHHTTTSHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCH------HHHHHHHHhcchHHH
Confidence 34445667777778888887655456788888888888888777777777663222111 123333444555555
Q ss_pred HHHHHHH
Q 011845 99 ARQLLAK 105 (476)
Q Consensus 99 A~~~~~~ 105 (476)
|.-+|.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5554443
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=53.62 E-value=1.3e+02 Score=25.13 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENPY-IWQCWAVLENKLGNIGKARELFDAST 73 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~ 73 (476)
.+..+-......|+++.|-++|.-++... +-+.. .|..=+.++.+.+.-....+.++...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 44555566677899999999998888765 44433 34444456666555544444444443
No 477
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=53.09 E-value=1.3e+02 Score=24.79 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=103.2
Q ss_pred CCchhHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCCCHHH
Q 011845 145 PKSCASWIAWSQMEMQ-QENNLAARQLFERAVQASPKNRFAWHVWGIFEA-----NMGFIDKGKKLLKIGHAVNPRDPVL 218 (476)
Q Consensus 145 p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~ 218 (476)
...|+....|+..+.. +.++++|..+|+.-...+. .+..-+.+|..+. ..++...|++.+..+.. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3456777777776643 4678888888776554332 3445555555443 23467788888887765 345677
Q ss_pred HHHHHHHHHHc-----CC--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHH
Q 011845 219 LQSLALLEYKY-----ST--ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQ 291 (476)
Q Consensus 219 ~~~la~~~~~~-----~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 291 (476)
...+|.++..- ++ ..+|++++.++.... +..+-+.|...|+. ..++ +....|..... .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~--g~~k-------~~t~ap~~g~p----~ 172 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG--GKEK-------FKTNAPGEGKP----L 172 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc--cchh-------hcccCCCCCCC----c
Confidence 77777666532 22 567888888887664 34555556555543 2222 22223311110 0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQG----NSVRAEEIRNLY 347 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 347 (476)
..+..+.-..+.+.|.++-.++-+++ ++.+-.++.+.|..-. +.++|..+-.++
T Consensus 173 ~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA 230 (248)
T KOG4014|consen 173 DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRA 230 (248)
T ss_pred chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHH
Confidence 01344445677788888877776653 4455556666664322 344454443333
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.82 E-value=1e+02 Score=23.55 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHcCChhHH------HHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHH
Q 011845 233 NLARKLFRRAS-EIDPRHQPVWIAWGWMEWKEGNLDTA------RELYERALSIDSTTESAARCLQAWGVLEQRVGNLSA 305 (476)
Q Consensus 233 ~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A------~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 305 (476)
..-...|+..+ .....+...-.-+-.+..-...+... ..+++++++...+......=..-+-....-....++
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d 81 (125)
T smart00777 2 EQQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDE 81 (125)
T ss_pred hHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 011845 306 ARRLFRSSLNIN--SQSYITWMTWAQLEEDQGNSVRAEEIRN 345 (476)
Q Consensus 306 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 345 (476)
+.++|+.+.... ...+..+..+|..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 479
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.49 E-value=37 Score=29.08 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=16.9
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCC
Q 011845 122 LLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
...+..|+++.|+++..-+++.+-
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCC
Confidence 334566888888888888877763
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=51.82 E-value=1.4e+02 Score=24.95 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHhccHHHHHHHHHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS-QMEMQQENNLAARQLFERA 174 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~a 174 (476)
.+..+-......|+++.|-.+|--++...+-+......+| .++...+.-....+.++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3444555555667777777777766666544433333333 3444444333333333333
No 481
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.97 E-value=2.3e+02 Score=27.01 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Q 011845 151 WIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
+...|........|++|+.++-.|
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleA 189 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEA 189 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666777777666544
No 482
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.88 E-value=1.8e+02 Score=25.82 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHh--ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH------HHcCCHHHHHHHH
Q 011845 134 RNLFRQATKCNPKSCASWIAWSQMEMQQ--ENNLAARQLFERAVQASPKNRFAWHVWGIFE------ANMGFIDKGKKLL 205 (476)
Q Consensus 134 ~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~ 205 (476)
+.++..+++.+|.+-..|...-.++... .++..-..+.++.++.++.+...|...-.+. .....+..-.++-
T Consensus 94 ld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eyt 173 (328)
T COG5536 94 LDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYT 173 (328)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhH
Confidence 3445555555555555555444444333 3344444555555555555544333222111 1222223334444
Q ss_pred HHHHhcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHhccCCCCHHHHHHHH
Q 011845 206 KIGHAVNPRDPVLLQSL---ALLEYKYST------ANLARKLFRRASEIDPRHQPVWIAWG 257 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~ 257 (476)
..++..++.+..+|... -...+..|+ +++-+++.-..+-.+|++..+|..+-
T Consensus 174 t~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 174 TSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 44555555555555444 222222332 23344455555556677766665543
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.40 E-value=47 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
...|.-....|++++|+.+|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445666667777777777777664
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.27 E-value=95 Score=22.45 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE 114 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (476)
.+-.+|.+|...|+.+.|..-|+.--.+.|.+.
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 334455555555555555555555444555443
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.19 E-value=2.3e+02 Score=26.76 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPR---HQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
++..+|..|...|+.+.|++.|-++-..... ....+.++..+-...|+|..-..+..++.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 5566677777777777777777665444332 2345556666666667777776666666554
No 486
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=1.9e+02 Score=25.80 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHH---HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPR---HQPVW---IAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~---~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
.+++.++|..|.+.++.+.+.+.+.+.++..-. ..+++ ..+|.+|..+.=.++.++.....++...+-....+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 346666777777777766666666665543211 11222 334555544444455555555555554443332222
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
-...|.......+|.+|...+..++...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2233556666667777777776666544
No 487
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=49.56 E-value=2.1e+02 Score=26.21 Aligned_cols=229 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH---------HH
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV---------LE 90 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~---------~~ 90 (476)
.++..|+++.| +.++++.. +..-++..+-.+..... ...|.+++...|.....+..... .|
T Consensus 35 lLL~m~e~e~A---L~kAi~Sg--D~DLi~~vLl~L~~~l~-----~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y 104 (319)
T PF04840_consen 35 LLLKMGEDELA---LNKAIESG--DTDLIYLVLLHLKRKLS-----LSQFFKILNQNPVASNLYKKYCREQDRELLKDFY 104 (319)
T ss_pred HHhcCCchHHH---HHHHHHcC--CccHHHHHHHHHHHhCC-----HHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHH
Q ss_pred HHhCCHHHHHHHHHHhh---ccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------------CCCchhHHHHHH
Q 011845 91 LRQGNIKKARQLLAKGL---KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC------------NPKSCASWIAWS 155 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~~la 155 (476)
.+.+++.+.-.+.-+-- .........+......|...++..-.....++-+++ ..-.........
T Consensus 105 ~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti 184 (319)
T PF04840_consen 105 YQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQKELEEKYNTNFVGLSLNDTI 184 (319)
T ss_pred HhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCHHHHH
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845 156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235 (476)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 235 (476)
.-+...|+...|..+-.. ..-.+...|......+...++|++-...... ...|..+.-...++...|+..+|
T Consensus 185 ~~li~~~~~k~A~kl~k~---Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKE---FKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHH
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011845 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYER 275 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (476)
..+..+ ... ......|.+.|++.+|.+..-+
T Consensus 257 ~~yI~k--------~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPK--------IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHh--------CCh-HHHHHHHHHCCCHHHHHHHHHH
No 488
>PRK09687 putative lyase; Provisional
Probab=49.21 E-value=2e+02 Score=25.78 Aligned_cols=59 Identities=10% Similarity=-0.133 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH----HHHHHHHHHh
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI----KKARQLLAKG 106 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----~~A~~~~~~~ 106 (476)
+..+....+..+...|. +++...+.+++. ..++......+.++...|.. .++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444444444444443 233333333322 22344444444444445542 3444444444
No 489
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.49 E-value=2.5e+02 Score=26.76 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc-----c---hhhhhhhhcccchHHHHHHHHHhccc
Q 011845 319 QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV-----D---DASWVMGFMDIIDPALDRIKQLLNLE 382 (476)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~---~~~~~~~~~g~~~~A~~~~~~al~~~ 382 (476)
-.+......+.++.+.|++++|.+++........++. . .+-..........+|+.+++-++..+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3456677888899999999999999998876443322 1 11222334456778888888776544
No 490
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.97 E-value=2.4e+02 Score=26.48 Aligned_cols=54 Identities=9% Similarity=-0.132 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCcC-----cHHHHHHHHHH--HHHhCCHHHHHHHHHH
Q 011845 52 WAVLENKLGNIGKARELFDASTVADKG-----HIAAWHGWAVL--ELRQGNIKKARQLLAK 105 (476)
Q Consensus 52 la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~--~~~~~~~~~A~~~~~~ 105 (476)
.+..++..++|..|...|..+....+. ....+..++.+ +...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 455677889999999999998876432 12334444444 4566788888888875
No 491
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.31 E-value=2.5e+02 Score=26.47 Aligned_cols=94 Identities=12% Similarity=-0.040 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHH
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPK---NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--------DPVL 218 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~ 218 (476)
++..+|..|...|+++.|++.|.++-.-... ....+.++..+-...|+|.....+..++...... .+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 5667778888888888888888775443322 2455666677777777777776666666543100 1123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 219 LQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 219 ~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
...-|.+....+++..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444455555557777777665543
No 492
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.27 E-value=96 Score=23.52 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
.+++..+...|+.+=.+++++-|
T Consensus 54 HNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 54 HNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hhHHHHHHHcCChHHHHHHHHHH
Confidence 45566666666666666666543
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.01 E-value=2.1e+02 Score=25.54 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC---chh---HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH---HH
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPK---SCA---SWIAWSQMEMQQENNLAARQLFERAVQASPKNR---FA 184 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~ 184 (476)
.+++.++|..|.+.++.+.+.+++.+.++..-. ..+ ....+|.+|..+.-.++.++.....++...+-. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 345566666666666666666655555443211 111 223444445444444555555555554433211 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 185 WHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 185 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
-...|.......++.+|-.++...+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 1223444445556666666665555443
No 494
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.70 E-value=42 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
+...|.-+...|++++|+.+|+.+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344456666778888888888877653
No 495
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=46.67 E-value=48 Score=17.96 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhc----CCHHHHHHHHHHhhc
Q 011845 13 PYVALGKVLSKQ----SKVAEARAIYAKGSQ 39 (476)
Q Consensus 13 ~~~~la~~~~~~----g~~~~A~~~~~~~~~ 39 (476)
+.+.+|.+|..- .+..+|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455566555432 256666666666543
No 496
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.31 E-value=1.7e+02 Score=24.17 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHH
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 339 (476)
..++.+.|.+++|.+.+++... +|++......|..+-.+...+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 4567788888888888888777 77766666666665555544443
No 497
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=46.00 E-value=3.5e+02 Score=30.31 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=99.9
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHH-----HHHHHHcCCHHHHH---HHHHHHhh--------
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCW-----AVLENKLGNIGKAR---ELFDASTV-------- 74 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----a~~~~~~g~~~~A~---~~~~~~~~-------- 74 (476)
......+|..++..|.+.+|+..|..++......+-.+|..- +.+..-.+....-. ........
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 456778999999999999999999999876544444455432 22222111110000 01110000
Q ss_pred ----------cCcCcH---------HHHHHHHHHHHHhCCHHHHHHHHHHhhccC----CCc--HHHHHHHHHHHHHhc-
Q 011845 75 ----------ADKGHI---------AAWHGWAVLELRQGNIKKARQLLAKGLKFC----GGN--EYIYQTLALLEAKAN- 128 (476)
Q Consensus 75 ----------~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----p~~--~~~~~~la~~~~~~g- 128 (476)
..|.+. .... ......-...+++++.+|.++.... |.- .++...++.++....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~-~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~ 400 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNL-VNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHL 400 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhh-ccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhc
Confidence 001111 0000 0001111234688999999997332 322 356677777777777
Q ss_pred -------------------cHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Q 011845 129 -------------------RYEQARNLFRQATKCNPK------SCASWIAWSQMEMQQENNLAARQLFERAVQAS 178 (476)
Q Consensus 129 -------------------~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 178 (476)
.-.++...+.+++..... ....+..+|.+|...|-..+..-+++.++...
T Consensus 401 ~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 401 SDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred ccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 677888888888776532 24578899999999999988888888777643
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=45.68 E-value=88 Score=21.60 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHH
Q 011845 301 GNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQL 378 (476)
Q Consensus 301 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 378 (476)
+.|+.|.++..+++..+ ..|+.++|+..|++.+..-.+-.....-.......++.|..+-+++
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km 65 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKM 65 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHH
No 499
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=45.43 E-value=63 Score=19.02 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCChHHH
Q 011845 309 LFRSSLNINSQSYITWMTWAQLEEDQGNSVRA 340 (476)
Q Consensus 309 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 340 (476)
.|..++-.+|++...+..++..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 35566667777777777788887777777554
No 500
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=45.28 E-value=72 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 322 (476)
.+|..+...|++++|..+|-+|+...|+...
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 3466666666677777766666666665443
Done!