Query 011845
Match_columns 476
No_of_seqs 1255 out of 2887
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 16:30:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-45 4.5E-50 347.8 44.7 369 15-387 3-374 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-44 5.1E-49 340.6 41.9 361 2-366 24-387 (388)
3 2xpi_A Anaphase-promoting comp 100.0 5.2E-40 1.8E-44 327.5 41.0 377 8-388 147-586 (597)
4 2y4t_A DNAJ homolog subfamily 100.0 2.3E-39 7.7E-44 311.4 41.7 362 2-386 17-415 (450)
5 2gw1_A Mitochondrial precursor 100.0 2.6E-40 8.9E-45 323.4 35.6 374 10-389 5-486 (514)
6 2xpi_A Anaphase-promoting comp 100.0 7.5E-40 2.6E-44 326.3 37.5 376 5-387 112-551 (597)
7 3fp2_A TPR repeat-containing p 100.0 5.4E-39 1.8E-43 315.9 35.9 373 10-388 24-498 (537)
8 3ieg_A DNAJ homolog subfamily 100.0 8.8E-38 3E-42 290.7 41.7 322 10-335 2-354 (359)
9 2gw1_A Mitochondrial precursor 100.0 9.4E-38 3.2E-42 305.3 34.5 350 2-354 31-482 (514)
10 2y4t_A DNAJ homolog subfamily 100.0 1.9E-36 6.5E-41 291.0 39.3 326 27-353 8-361 (450)
11 3ieg_A DNAJ homolog subfamily 100.0 7.1E-36 2.4E-40 277.8 41.8 309 45-353 2-338 (359)
12 3fp2_A TPR repeat-containing p 100.0 4.6E-37 1.6E-41 302.1 34.7 351 2-355 50-496 (537)
13 4g1t_A Interferon-induced prot 100.0 2.4E-36 8.2E-41 292.2 36.3 371 9-389 49-467 (472)
14 3hym_B Cell division cycle pro 100.0 5.2E-35 1.8E-39 268.8 33.9 293 43-338 19-322 (330)
15 3hym_B Cell division cycle pro 100.0 9.7E-35 3.3E-39 267.0 34.6 298 3-304 14-322 (330)
16 1fch_A Peroxisomal targeting s 100.0 3E-34 1E-38 268.1 27.3 291 55-349 34-358 (368)
17 1fch_A Peroxisomal targeting s 100.0 1.3E-33 4.3E-38 263.9 28.8 296 19-316 33-359 (368)
18 2ooe_A Cleavage stimulation fa 100.0 2.3E-31 7.8E-36 260.6 41.5 377 2-385 4-496 (530)
19 2xm6_A Protein corresponding t 100.0 6.2E-30 2.1E-34 248.0 47.0 356 7-384 35-435 (490)
20 4g1t_A Interferon-induced prot 100.0 4.7E-32 1.6E-36 262.0 31.7 337 6-355 89-464 (472)
21 4eqf_A PEX5-related protein; a 100.0 7E-33 2.4E-37 258.6 24.9 269 45-313 64-353 (365)
22 4eqf_A PEX5-related protein; a 100.0 1.7E-32 6E-37 255.9 26.5 268 10-278 64-355 (365)
23 2h6f_A Protein farnesyltransfe 100.0 5.7E-32 1.9E-36 250.4 24.3 259 2-262 88-365 (382)
24 3cv0_A Peroxisome targeting si 100.0 1.2E-31 4.2E-36 246.0 25.8 285 12-318 22-317 (327)
25 3cv0_A Peroxisome targeting si 100.0 2.6E-31 8.9E-36 243.7 26.7 286 45-354 20-319 (327)
26 2h6f_A Protein farnesyltransfe 100.0 3E-31 1E-35 245.5 26.1 259 72-334 89-366 (382)
27 2xm6_A Protein corresponding t 100.0 4.5E-27 1.5E-31 227.9 46.5 352 9-384 73-470 (490)
28 2ooe_A Cleavage stimulation fa 100.0 3E-28 1E-32 238.5 38.2 346 2-353 37-495 (530)
29 3mkr_A Coatomer subunit epsilo 100.0 7.5E-29 2.6E-33 222.3 29.6 276 19-310 7-288 (291)
30 3u4t_A TPR repeat-containing p 100.0 3.2E-29 1.1E-33 223.6 26.1 255 80-335 3-269 (272)
31 3mkr_A Coatomer subunit epsilo 100.0 8.5E-28 2.9E-32 215.5 30.7 275 53-342 6-286 (291)
32 3u4t_A TPR repeat-containing p 100.0 1E-28 3.4E-33 220.4 24.3 251 10-262 2-267 (272)
33 3uq3_A Heat shock protein STI1 100.0 2.5E-28 8.5E-33 215.8 26.2 226 11-246 5-237 (258)
34 2pl2_A Hypothetical conserved 100.0 2E-28 6.9E-33 210.1 24.3 210 43-276 2-211 (217)
35 2pl2_A Hypothetical conserved 100.0 2.5E-28 8.7E-33 209.5 24.5 199 8-208 2-211 (217)
36 3uq3_A Heat shock protein STI1 100.0 6.1E-28 2.1E-32 213.3 26.1 227 45-280 4-237 (258)
37 3sf4_A G-protein-signaling mod 100.0 3.1E-28 1.1E-32 230.3 23.3 292 48-339 11-365 (406)
38 3sf4_A G-protein-signaling mod 100.0 5.3E-28 1.8E-32 228.7 22.8 297 9-306 7-366 (406)
39 3e4b_A ALGK; tetratricopeptide 100.0 8.5E-27 2.9E-31 222.5 24.3 344 15-383 7-389 (452)
40 4a1s_A PINS, partner of inscut 99.9 1.5E-26 5.1E-31 219.3 23.4 271 46-316 48-372 (411)
41 4a1s_A PINS, partner of inscut 99.9 3.8E-27 1.3E-31 223.3 19.2 274 9-283 46-376 (411)
42 3ro2_A PINS homolog, G-protein 99.9 2.5E-26 8.7E-31 211.1 22.3 277 13-318 7-334 (338)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.6E-27 2.9E-31 208.1 18.3 256 17-310 11-269 (275)
44 2q7f_A YRRB protein; TPR, prot 99.9 5.3E-26 1.8E-30 199.0 22.0 215 46-260 23-237 (243)
45 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.6E-26 1.9E-30 202.8 22.4 247 93-344 18-269 (275)
46 2ond_A Cleavage stimulation fa 99.9 1.9E-25 6.6E-30 202.6 26.2 251 63-328 33-304 (308)
47 3ro2_A PINS homolog, G-protein 99.9 3E-26 1E-30 210.6 21.1 253 2-282 30-335 (338)
48 2q7f_A YRRB protein; TPR, prot 99.9 6.9E-26 2.4E-30 198.3 22.4 220 10-230 22-241 (243)
49 2ho1_A Type 4 fimbrial biogene 99.9 8.4E-25 2.9E-29 192.6 25.9 210 46-255 37-248 (252)
50 2vq2_A PILW, putative fimbrial 99.9 2E-24 6.8E-29 186.5 27.5 212 7-219 4-219 (225)
51 3e4b_A ALGK; tetratricopeptide 99.9 3.5E-25 1.2E-29 211.4 24.9 354 7-385 31-425 (452)
52 1ouv_A Conserved hypothetical 99.9 4.7E-24 1.6E-28 190.2 30.0 229 8-283 3-255 (273)
53 1ouv_A Conserved hypothetical 99.9 8.7E-24 3E-28 188.4 31.8 234 76-324 2-259 (273)
54 2ho1_A Type 4 fimbrial biogene 99.9 1.7E-24 5.8E-29 190.6 26.7 210 76-285 32-244 (252)
55 2vq2_A PILW, putative fimbrial 99.9 4.1E-24 1.4E-28 184.5 27.6 210 43-252 5-218 (225)
56 2ond_A Cleavage stimulation fa 99.9 4.9E-24 1.7E-28 193.4 27.7 266 8-286 5-299 (308)
57 3vtx_A MAMA; tetratricopeptide 99.9 1.8E-24 6.2E-29 180.7 22.7 170 113-282 4-173 (184)
58 3vtx_A MAMA; tetratricopeptide 99.9 1.7E-24 5.8E-29 180.8 22.3 170 45-214 4-173 (184)
59 4abn_A Tetratricopeptide repea 99.9 8.8E-25 3E-29 209.9 21.9 215 95-313 83-318 (474)
60 4abn_A Tetratricopeptide repea 99.9 1.5E-24 5.1E-29 208.3 23.4 217 59-276 81-318 (474)
61 4e6h_A MRNA 3'-END-processing 99.9 4.4E-22 1.5E-26 195.9 39.4 380 3-387 58-576 (679)
62 3ulq_A Response regulator aspa 99.9 5.5E-24 1.9E-28 199.5 23.7 300 12-316 13-368 (383)
63 4i17_A Hypothetical protein; T 99.9 1.1E-22 3.7E-27 176.2 27.4 209 113-331 6-224 (228)
64 3ulq_A Response regulator aspa 99.9 1.2E-23 4.1E-28 197.3 21.7 301 47-349 13-367 (383)
65 4i17_A Hypothetical protein; T 99.9 4.4E-23 1.5E-27 178.6 23.1 214 7-227 3-225 (228)
66 1xi4_A Clathrin heavy chain; a 99.9 1.8E-21 6.2E-26 197.4 35.2 312 17-373 1055-1376(1630)
67 1xi4_A Clathrin heavy chain; a 99.9 5.4E-21 1.9E-25 193.9 36.6 330 11-389 985-1317(1630)
68 3nf1_A KLC 1, kinesin light ch 99.9 5.9E-24 2E-28 193.2 13.1 247 7-281 23-309 (311)
69 4gyw_A UDP-N-acetylglucosamine 99.9 4.8E-23 1.6E-27 205.2 20.4 169 111-279 6-174 (723)
70 4gyw_A UDP-N-acetylglucosamine 99.9 8.4E-23 2.9E-27 203.4 20.2 169 43-211 6-174 (723)
71 3nf1_A KLC 1, kinesin light ch 99.9 1.2E-23 4.1E-28 191.2 13.0 249 43-319 24-310 (311)
72 3qky_A Outer membrane assembly 99.9 5.2E-22 1.8E-26 175.6 22.2 211 76-303 11-248 (261)
73 3qky_A Outer membrane assembly 99.9 9.5E-22 3.2E-26 173.9 22.5 217 108-341 9-252 (261)
74 1hz4_A MALT regulatory protein 99.9 9.4E-21 3.2E-25 176.9 30.0 267 12-278 15-321 (373)
75 3q15_A PSP28, response regulat 99.9 4.5E-21 1.5E-25 179.3 27.7 230 82-315 103-364 (378)
76 3dra_A Protein farnesyltransfe 99.9 6.3E-21 2.2E-25 169.4 25.6 228 28-256 50-299 (306)
77 1hz4_A MALT regulatory protein 99.9 2.6E-20 9E-25 173.9 31.0 270 47-316 15-322 (373)
78 3dra_A Protein farnesyltransfe 99.9 2.2E-20 7.4E-25 165.9 28.0 230 97-329 50-301 (306)
79 1b89_A Protein (clathrin heavy 99.9 7.9E-23 2.7E-27 186.9 12.4 286 20-343 12-304 (449)
80 2pzi_A Probable serine/threoni 99.9 1.5E-21 5E-26 195.7 22.7 188 74-265 388-583 (681)
81 1qqe_A Vesicular transport pro 99.9 1.8E-21 6.2E-26 174.9 19.8 182 150-331 79-284 (292)
82 2pzi_A Probable serine/threoni 99.9 1.3E-21 4.5E-26 196.0 20.9 185 43-231 391-583 (681)
83 1b89_A Protein (clathrin heavy 99.9 3.2E-22 1.1E-26 182.9 13.9 291 9-332 30-339 (449)
84 3q15_A PSP28, response regulat 99.9 1.5E-20 5.2E-25 175.7 24.8 236 116-352 103-367 (378)
85 4e6h_A MRNA 3'-END-processing 99.9 4.8E-19 1.6E-23 174.4 36.2 349 2-354 91-574 (679)
86 1qqe_A Vesicular transport pro 99.9 8.6E-21 2.9E-25 170.5 18.6 210 61-284 32-274 (292)
87 3as5_A MAMA; tetratricopeptide 99.9 6.3E-20 2.2E-24 152.9 21.8 167 81-247 9-175 (186)
88 3as5_A MAMA; tetratricopeptide 99.9 4.1E-20 1.4E-24 154.0 20.2 168 47-214 9-176 (186)
89 4ga2_A E3 SUMO-protein ligase 99.9 2.2E-21 7.5E-26 155.5 11.3 144 53-196 4-148 (150)
90 3urz_A Uncharacterized protein 99.9 4.6E-20 1.6E-24 156.8 19.6 165 117-282 7-189 (208)
91 4ga2_A E3 SUMO-protein ligase 99.9 3.4E-21 1.2E-25 154.4 11.5 144 121-264 4-148 (150)
92 3urz_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 154.4 20.6 167 46-213 4-188 (208)
93 3edt_B KLC 2, kinesin light ch 99.8 1.8E-20 6.1E-25 167.5 16.3 134 77-210 40-197 (283)
94 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.5E-19 5.3E-24 155.7 20.3 210 79-321 3-218 (225)
95 3dss_A Geranylgeranyl transfer 99.8 3.3E-18 1.1E-22 152.5 28.9 198 130-330 90-318 (331)
96 3dss_A Geranylgeranyl transfer 99.8 4.2E-18 1.4E-22 151.8 28.8 229 58-286 41-311 (331)
97 3edt_B KLC 2, kinesin light ch 99.8 7E-20 2.4E-24 163.6 17.5 222 23-244 13-280 (283)
98 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.6E-19 2.6E-23 151.4 22.1 206 10-249 3-217 (225)
99 3q7a_A Farnesyltransferase alp 99.8 2.6E-18 8.9E-23 153.8 25.6 185 12-197 55-257 (349)
100 2r5s_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 148.0 15.2 167 7-175 2-171 (176)
101 3q7a_A Farnesyltransferase alp 99.8 1.1E-17 3.8E-22 149.6 26.3 254 49-329 57-345 (349)
102 2r5s_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 145.5 15.5 166 44-210 4-172 (176)
103 3qou_A Protein YBBN; thioredox 99.8 2.3E-18 7.9E-23 154.0 19.4 167 43-209 114-282 (287)
104 4gco_A Protein STI-1; structur 99.8 6.2E-19 2.1E-23 136.3 13.1 119 4-123 6-124 (126)
105 3qou_A Protein YBBN; thioredox 99.8 3.9E-18 1.3E-22 152.5 20.0 167 111-277 114-282 (287)
106 4gco_A Protein STI-1; structur 99.8 2E-18 6.8E-23 133.5 14.8 117 74-190 7-123 (126)
107 2ifu_A Gamma-SNAP; membrane fu 99.8 2.4E-18 8.2E-23 155.7 15.5 183 157-342 45-253 (307)
108 2ifu_A Gamma-SNAP; membrane fu 99.8 4.6E-18 1.6E-22 153.8 17.0 184 122-308 44-253 (307)
109 2vsy_A XCC0866; transferase, g 99.8 1.1E-17 3.8E-22 165.0 20.9 164 60-223 3-169 (568)
110 3mv2_B Coatomer subunit epsilo 99.8 9.2E-17 3.1E-21 140.9 23.2 257 8-286 11-289 (310)
111 2vsy_A XCC0866; transferase, g 99.8 1.1E-17 3.7E-22 165.1 18.9 165 93-257 2-169 (568)
112 3gyz_A Chaperone protein IPGC; 99.8 4.2E-18 1.4E-22 135.5 12.1 116 67-182 23-138 (151)
113 4f3v_A ESX-1 secretion system 99.8 8.1E-18 2.8E-22 145.6 14.8 196 59-256 19-247 (282)
114 4f3v_A ESX-1 secretion system 99.8 7.4E-18 2.5E-22 145.9 14.5 201 126-329 18-249 (282)
115 3gyz_A Chaperone protein IPGC; 99.8 3.2E-18 1.1E-22 136.1 10.9 114 170-283 24-137 (151)
116 2c2l_A CHIP, carboxy terminus 99.7 1.3E-17 4.5E-22 148.5 13.9 194 46-244 4-198 (281)
117 2c2l_A CHIP, carboxy terminus 99.7 1.9E-17 6.7E-22 147.4 14.5 198 77-279 1-199 (281)
118 2uy1_A Cleavage stimulation fa 99.7 2.4E-14 8.1E-19 137.2 36.3 361 10-382 13-414 (493)
119 3rjv_A Putative SEL1 repeat pr 99.7 3.7E-16 1.3E-20 133.0 19.8 174 29-211 4-197 (212)
120 1p5q_A FKBP52, FK506-binding p 99.7 1.2E-18 4.1E-23 159.4 4.2 151 127-277 126-292 (336)
121 1p5q_A FKBP52, FK506-binding p 99.7 7.3E-19 2.5E-23 160.8 2.3 183 24-209 78-292 (336)
122 3rjv_A Putative SEL1 repeat pr 99.7 4.8E-16 1.6E-20 132.2 19.7 173 99-279 5-197 (212)
123 2vgx_A Chaperone SYCD; alterna 99.7 3.9E-17 1.3E-21 130.2 10.5 116 67-182 8-123 (148)
124 2vgx_A Chaperone SYCD; alterna 99.7 8.3E-17 2.8E-21 128.3 12.2 114 171-284 10-123 (148)
125 2fo7_A Synthetic consensus TPR 99.7 9.5E-16 3.2E-20 120.0 18.0 131 49-179 4-134 (136)
126 3mv2_B Coatomer subunit epsilo 99.7 9.6E-16 3.3E-20 134.4 18.9 248 53-324 20-290 (310)
127 2fo7_A Synthetic consensus TPR 99.7 1.6E-15 5.6E-20 118.6 18.6 132 82-213 3-134 (136)
128 2xcb_A PCRH, regulatory protei 99.7 1.6E-16 5.5E-21 125.9 11.4 115 68-182 6-120 (142)
129 2xcb_A PCRH, regulatory protei 99.7 2.4E-16 8.2E-21 124.9 12.3 127 32-159 5-131 (142)
130 1dce_A Protein (RAB geranylger 99.7 3.7E-16 1.3E-20 152.0 13.9 186 97-282 46-270 (567)
131 2uy1_A Cleavage stimulation fa 99.7 2.4E-13 8.2E-18 130.3 32.8 334 2-349 39-412 (493)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.7 8.4E-15 2.9E-19 124.8 19.3 133 11-147 6-154 (213)
133 2fbn_A 70 kDa peptidylprolyl i 99.6 4E-16 1.4E-20 131.4 9.8 151 17-168 10-176 (198)
134 2fbn_A 70 kDa peptidylprolyl i 99.6 3.6E-16 1.2E-20 131.7 9.5 152 51-202 9-176 (198)
135 3upv_A Heat shock protein STI1 99.6 5E-15 1.7E-19 114.6 15.3 98 81-178 5-102 (126)
136 3upv_A Heat shock protein STI1 99.6 2.9E-15 9.8E-20 116.0 13.7 111 47-157 5-121 (126)
137 2e2e_A Formate-dependent nitri 99.6 2.6E-15 8.9E-20 123.9 14.2 127 160-286 22-151 (177)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.4E-14 4.7E-19 123.5 18.8 132 47-181 7-154 (213)
139 2qfc_A PLCR protein; TPR, HTH, 99.6 3E-14 1E-18 127.9 21.7 168 183-350 76-266 (293)
140 1a17_A Serine/threonine protei 99.6 1.5E-14 5.2E-19 117.7 17.9 130 46-175 13-144 (166)
141 1dce_A Protein (RAB geranylger 99.6 1.3E-14 4.5E-19 141.1 20.1 186 131-339 46-244 (567)
142 2e2e_A Formate-dependent nitri 99.6 2.3E-15 7.7E-20 124.3 12.7 123 59-181 23-148 (177)
143 2qfc_A PLCR protein; TPR, HTH, 99.6 5.6E-14 1.9E-18 126.0 22.6 169 148-316 75-266 (293)
144 1a17_A Serine/threonine protei 99.6 1.8E-14 6E-19 117.3 17.1 133 10-143 12-146 (166)
145 2lni_A Stress-induced-phosphop 99.6 1.2E-14 4E-19 113.5 14.3 117 45-161 15-131 (133)
146 2lni_A Stress-induced-phosphop 99.6 1.4E-14 4.9E-19 113.0 14.7 121 76-196 12-132 (133)
147 2vyi_A SGTA protein; chaperone 99.6 1.4E-14 4.9E-19 112.5 14.6 117 80-196 12-128 (131)
148 2vyi_A SGTA protein; chaperone 99.6 1.9E-14 6.4E-19 111.8 14.9 119 147-265 11-129 (131)
149 3sz7_A HSC70 cochaperone (SGT) 99.6 1.3E-14 4.5E-19 118.0 14.2 112 44-155 9-120 (164)
150 3sz7_A HSC70 cochaperone (SGT) 99.6 1.5E-14 5.3E-19 117.5 13.9 113 77-189 8-120 (164)
151 4gcn_A Protein STI-1; structur 99.6 4.2E-14 1.4E-18 109.3 14.4 104 216-319 8-115 (127)
152 3u3w_A Transcriptional activat 99.6 5.9E-14 2E-18 125.9 17.5 167 86-279 81-266 (293)
153 3u3w_A Transcriptional activat 99.6 1.9E-13 6.4E-18 122.6 20.4 165 187-351 80-267 (293)
154 3q49_B STIP1 homology and U bo 99.6 4.1E-14 1.4E-18 111.1 13.8 103 44-146 7-109 (137)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.4E-15 8.3E-20 143.4 7.7 145 58-202 246-405 (457)
156 1na0_A Designed protein CTPR3; 99.6 1.5E-13 5.1E-18 105.7 16.6 96 50-145 13-108 (125)
157 1hxi_A PEX5, peroxisome target 99.6 3.4E-14 1.2E-18 108.7 12.5 99 49-147 20-118 (121)
158 1na0_A Designed protein CTPR3; 99.6 2E-13 6.7E-18 105.0 17.0 111 150-260 11-121 (125)
159 3q49_B STIP1 homology and U bo 99.6 7.9E-14 2.7E-18 109.5 14.7 119 6-125 4-127 (137)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.8E-15 1.3E-19 142.0 7.9 142 129-270 249-405 (457)
161 1hxi_A PEX5, peroxisome target 99.6 5.1E-14 1.8E-18 107.7 12.4 101 82-182 19-119 (121)
162 4gcn_A Protein STI-1; structur 99.6 5.9E-14 2E-18 108.4 12.8 97 83-179 11-114 (127)
163 1elw_A TPR1-domain of HOP; HOP 99.5 2.1E-13 7.3E-18 103.7 15.4 106 49-154 7-112 (118)
164 2dba_A Smooth muscle cell asso 99.5 1.6E-13 5.5E-18 109.2 14.8 114 44-157 26-142 (148)
165 1elw_A TPR1-domain of HOP; HOP 99.5 4.4E-13 1.5E-17 101.9 16.5 96 120-215 10-105 (118)
166 3gw4_A Uncharacterized protein 99.5 2.1E-13 7E-18 115.0 16.1 136 181-316 25-176 (203)
167 3rkv_A Putative peptidylprolyl 99.5 1.1E-13 3.9E-18 112.1 13.6 114 47-160 12-144 (162)
168 2hr2_A Hypothetical protein; a 99.5 3.6E-14 1.2E-18 111.0 9.6 103 47-149 12-137 (159)
169 3gw4_A Uncharacterized protein 99.5 3.7E-13 1.3E-17 113.4 16.5 162 193-354 3-180 (203)
170 3rkv_A Putative peptidylprolyl 99.5 1.3E-13 4.4E-18 111.8 12.8 116 79-194 10-144 (162)
171 2dba_A Smooth muscle cell asso 99.5 4.5E-13 1.5E-17 106.6 15.7 117 76-192 24-143 (148)
172 2kck_A TPR repeat; tetratricop 99.5 1.6E-13 5.5E-18 103.3 12.3 107 6-113 1-110 (112)
173 2xev_A YBGF; tetratricopeptide 99.5 4.5E-13 1.5E-17 103.9 14.9 117 218-334 4-123 (129)
174 2hr2_A Hypothetical protein; a 99.5 1.7E-13 5.7E-18 107.3 11.7 99 117-215 14-135 (159)
175 2xev_A YBGF; tetratricopeptide 99.5 6.2E-13 2.1E-17 103.1 15.0 107 13-120 4-116 (129)
176 1wao_1 Serine/threonine protei 99.5 2.1E-14 7.2E-19 137.4 7.2 123 152-274 10-134 (477)
177 1wao_1 Serine/threonine protei 99.5 1.3E-14 4.6E-19 138.8 5.2 128 10-138 5-134 (477)
178 4b4t_Q 26S proteasome regulato 99.5 1.8E-11 6.1E-16 116.3 26.3 216 11-244 4-244 (434)
179 2if4_A ATFKBP42; FKBP-like, al 99.5 2.7E-14 9.2E-19 130.5 6.3 156 9-182 177-333 (338)
180 2kck_A TPR repeat; tetratricop 99.5 3.7E-13 1.3E-17 101.3 11.4 100 182-281 6-108 (112)
181 1elr_A TPR2A-domain of HOP; HO 99.5 6.9E-13 2.3E-17 102.9 12.8 109 48-157 6-121 (131)
182 1elr_A TPR2A-domain of HOP; HO 99.5 5.5E-13 1.9E-17 103.4 12.0 120 8-129 1-127 (131)
183 2if4_A ATFKBP42; FKBP-like, al 99.5 9.9E-14 3.4E-18 126.8 8.6 154 113-283 178-332 (338)
184 4b4t_Q 26S proteasome regulato 99.5 7.9E-12 2.7E-16 118.8 21.7 164 48-211 57-245 (434)
185 1ihg_A Cyclophilin 40; ppiase 99.4 1.9E-12 6.4E-17 119.5 15.9 121 47-167 224-360 (370)
186 3k9i_A BH0479 protein; putativ 99.4 3.1E-13 1.1E-17 102.8 7.9 92 59-150 3-97 (117)
187 1ihg_A Cyclophilin 40; ppiase 99.4 2.1E-12 7E-17 119.2 14.3 139 80-236 223-361 (370)
188 3k9i_A BH0479 protein; putativ 99.4 4.3E-13 1.5E-17 102.0 8.0 93 93-185 3-98 (117)
189 1zu2_A Mitochondrial import re 99.4 1.6E-12 5.5E-17 101.4 10.8 101 58-182 14-125 (158)
190 1zu2_A Mitochondrial import re 99.4 2.1E-12 7.3E-17 100.8 11.4 91 126-216 14-125 (158)
191 3ro3_A PINS homolog, G-protein 99.4 6.5E-12 2.2E-16 101.3 13.0 100 218-317 51-159 (164)
192 3ro3_A PINS homolog, G-protein 99.4 8.3E-12 2.8E-16 100.7 12.6 129 48-176 11-157 (164)
193 2kat_A Uncharacterized protein 99.2 2E-10 6.9E-15 86.7 12.2 81 65-145 4-84 (115)
194 2l6j_A TPR repeat-containing p 99.2 2.5E-11 8.4E-16 91.1 7.0 92 182-273 4-101 (111)
195 2l6j_A TPR repeat-containing p 99.2 1.4E-11 4.9E-16 92.4 5.4 90 47-136 5-100 (111)
196 2kat_A Uncharacterized protein 99.2 2.6E-10 8.7E-15 86.2 11.7 83 98-180 3-85 (115)
197 1na3_A Designed protein CTPR2; 99.2 2.4E-10 8.1E-15 82.1 10.7 77 48-124 11-87 (91)
198 1na3_A Designed protein CTPR2; 99.2 3.7E-10 1.3E-14 81.1 11.2 81 80-160 9-89 (91)
199 3n71_A Histone lysine methyltr 99.1 1.4E-09 4.9E-14 103.2 13.9 128 222-349 315-463 (490)
200 3n71_A Histone lysine methyltr 99.1 1E-09 3.5E-14 104.2 12.5 130 188-317 315-465 (490)
201 3ma5_A Tetratricopeptide repea 99.0 5.7E-10 2E-14 81.7 8.0 70 212-281 3-72 (100)
202 3ma5_A Tetratricopeptide repea 99.0 1.3E-09 4.5E-14 79.8 9.8 67 77-143 4-70 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 5.1E-10 1.8E-14 81.8 7.4 64 53-116 7-71 (99)
204 1klx_A Cysteine rich protein B 99.0 1E-08 3.5E-13 79.9 15.0 87 154-244 31-125 (138)
205 2kc7_A BFR218_protein; tetratr 99.0 7.8E-10 2.7E-14 80.9 7.7 88 85-180 5-93 (99)
206 3u64_A Protein TP_0956; tetrat 99.0 2.2E-08 7.7E-13 85.5 17.4 106 177-282 147-272 (301)
207 3u64_A Protein TP_0956; tetrat 99.0 1.3E-08 4.6E-13 86.9 15.8 108 210-320 146-273 (301)
208 1klx_A Cysteine rich protein B 99.0 9.9E-09 3.4E-13 80.0 13.6 109 61-177 10-126 (138)
209 3ly7_A Transcriptional activat 99.0 2.7E-08 9.2E-13 88.9 17.3 148 43-215 191-343 (372)
210 4g26_A Pentatricopeptide repea 99.0 1.6E-07 5.4E-12 90.0 23.6 160 17-176 32-203 (501)
211 3ly7_A Transcriptional activat 98.9 5.4E-08 1.8E-12 87.0 17.6 151 76-251 190-345 (372)
212 4g26_A Pentatricopeptide repea 98.9 2.8E-07 9.7E-12 88.2 22.0 181 45-226 24-220 (501)
213 3bee_A Putative YFRE protein; 98.8 5.4E-08 1.8E-12 69.4 11.9 74 212-285 2-78 (93)
214 1pc2_A Mitochondria fission pr 98.7 1.4E-07 4.7E-12 72.7 11.4 85 201-285 17-106 (152)
215 3bee_A Putative YFRE protein; 98.7 1.2E-07 4.1E-12 67.6 10.1 70 43-112 3-75 (93)
216 1pc2_A Mitochondria fission pr 98.7 3.1E-07 1.1E-11 70.8 11.6 87 132-218 16-107 (152)
217 3qww_A SET and MYND domain-con 98.6 2.4E-07 8E-12 86.5 11.9 97 228-324 310-424 (433)
218 3qwp_A SET and MYND domain-con 98.6 4.2E-07 1.4E-11 85.0 12.9 109 224-332 295-424 (429)
219 2v5f_A Prolyl 4-hydroxylase su 98.6 5.2E-07 1.8E-11 66.1 10.0 79 250-328 5-87 (104)
220 2v5f_A Prolyl 4-hydroxylase su 98.5 4.8E-07 1.6E-11 66.4 9.5 78 10-87 4-87 (104)
221 3qww_A SET and MYND domain-con 98.5 6.1E-07 2.1E-11 83.7 11.1 92 262-353 310-414 (433)
222 3qwp_A SET and MYND domain-con 98.5 2.6E-06 8.8E-11 79.7 15.1 97 258-354 295-404 (429)
223 4h7y_A Dual specificity protei 98.5 2.1E-06 7.1E-11 64.8 11.3 111 5-116 7-130 (161)
224 4h7y_A Dual specificity protei 98.4 2.1E-05 7.4E-10 59.3 14.0 53 162-214 74-126 (161)
225 1nzn_A CGI-135 protein, fissio 98.2 1.7E-05 5.8E-10 58.7 11.4 85 201-285 20-109 (126)
226 1nzn_A CGI-135 protein, fissio 98.2 2.4E-05 8.3E-10 57.9 11.2 92 27-119 17-113 (126)
227 3ffl_A Anaphase-promoting comp 97.9 6E-05 2.1E-09 58.4 8.5 61 48-108 22-91 (167)
228 3ffl_A Anaphase-promoting comp 97.9 0.00021 7.1E-09 55.4 11.3 134 11-158 20-165 (167)
229 1qsa_A Protein (soluble lytic 97.8 0.034 1.2E-06 54.2 28.5 310 14-349 9-347 (618)
230 3o48_A Mitochondria fission 1 97.6 0.0017 5.9E-08 48.1 12.2 81 43-123 37-121 (134)
231 1y8m_A FIS1; mitochondria, unk 97.6 0.0032 1.1E-07 47.4 13.6 73 214-286 37-113 (144)
232 3o48_A Mitochondria fission 1 97.6 0.0011 3.7E-08 49.2 10.8 72 215-286 39-114 (134)
233 1y8m_A FIS1; mitochondria, unk 97.4 0.0039 1.3E-07 46.9 12.3 78 43-120 36-117 (144)
234 1qsa_A Protein (soluble lytic 97.3 0.16 5.6E-06 49.4 32.7 144 198-344 268-436 (618)
235 3txn_A 26S proteasome regulato 97.2 0.017 5.8E-07 52.6 16.9 166 114-279 19-210 (394)
236 3kae_A CDC27, possible protein 97.2 0.045 1.6E-06 42.2 19.7 158 47-214 34-240 (242)
237 3mkq_A Coatomer beta'-subunit; 97.2 0.046 1.6E-06 55.8 21.8 45 159-208 663-707 (814)
238 4gns_B Protein CSD3, chitin bi 96.9 0.0065 2.2E-07 60.2 11.4 116 58-174 260-397 (754)
239 3mkq_A Coatomer beta'-subunit; 96.9 0.14 4.9E-06 52.1 22.2 98 124-242 609-707 (814)
240 4gns_B Protein CSD3, chitin bi 96.7 0.028 9.6E-07 55.7 14.5 57 186-242 341-397 (754)
241 3txn_A 26S proteasome regulato 96.7 0.34 1.2E-05 44.1 24.8 93 153-245 104-210 (394)
242 4b4t_P 26S proteasome regulato 96.6 0.39 1.3E-05 44.9 21.0 50 94-143 30-85 (445)
243 3spa_A Mtrpol, DNA-directed RN 96.5 0.063 2.2E-06 54.6 15.5 98 81-178 128-231 (1134)
244 3mkq_B Coatomer subunit alpha; 96.5 0.092 3.2E-06 41.5 13.4 99 57-173 16-114 (177)
245 3spa_A Mtrpol, DNA-directed RN 96.5 0.066 2.3E-06 54.5 15.5 98 47-144 128-231 (1134)
246 3mkq_B Coatomer subunit alpha; 96.2 0.32 1.1E-05 38.4 16.4 99 227-346 16-114 (177)
247 1zbp_A Hypothetical protein VP 96.2 0.081 2.8E-06 44.7 11.9 66 225-290 6-71 (273)
248 4ady_A RPN2, 26S proteasome re 96.1 0.85 2.9E-05 46.3 20.6 184 24-210 387-588 (963)
249 4fhn_B Nucleoporin NUP120; pro 96.0 1.2 4.1E-05 47.3 22.9 191 151-349 815-1049(1139)
250 1zbp_A Hypothetical protein VP 95.9 0.09 3.1E-06 44.5 11.1 122 192-320 7-133 (273)
251 4b4t_P 26S proteasome regulato 95.9 1.1 3.9E-05 41.8 22.1 186 24-209 29-245 (445)
252 2ff4_A Probable regulatory pro 95.9 0.16 5.6E-06 46.5 13.9 61 289-349 173-233 (388)
253 3kae_A CDC27, possible protein 95.8 0.46 1.6E-05 36.7 22.0 53 84-141 37-89 (242)
254 4b4t_S RPN3, 26S proteasome re 95.6 0.61 2.1E-05 43.7 16.4 126 122-249 144-303 (523)
255 2ff4_A Probable regulatory pro 95.4 0.31 1.1E-05 44.6 13.7 111 87-210 122-233 (388)
256 4fhn_B Nucleoporin NUP120; pro 95.3 0.53 1.8E-05 50.0 17.0 61 114-174 899-964 (1139)
257 4b4t_R RPN7, 26S proteasome re 94.6 0.18 6E-06 47.0 9.9 99 218-316 133-237 (429)
258 4b4t_S RPN3, 26S proteasome re 94.6 0.26 8.9E-06 46.2 10.7 177 157-342 145-362 (523)
259 3lvg_A Clathrin heavy chain 1; 94.5 2.1E-06 7.3E-11 78.2 -22.2 203 9-228 52-275 (624)
260 4b4t_R RPN7, 26S proteasome re 94.4 0.11 3.8E-06 48.4 8.2 101 249-349 130-236 (429)
261 1ya0_A SMG-7 transcript varian 94.2 0.36 1.2E-05 45.5 11.0 78 150-227 154-231 (497)
262 4ady_A RPN2, 26S proteasome re 94.0 6.2 0.00021 40.2 26.6 154 192-349 384-552 (963)
263 1ya0_A SMG-7 transcript varian 93.8 0.53 1.8E-05 44.4 11.4 80 81-160 153-232 (497)
264 3lvg_A Clathrin heavy chain 1; 93.2 2.8E-06 9.6E-11 77.4 -24.0 304 44-383 52-365 (624)
265 3lpz_A GET4 (YOR164C homolog); 90.9 7.9 0.00027 34.1 28.4 17 191-207 196-212 (336)
266 1wy6_A Hypothetical protein ST 88.9 5.9 0.0002 29.6 10.7 57 88-144 99-155 (172)
267 2wpv_A GET4, UPF0363 protein Y 84.7 19 0.00067 31.4 26.0 26 112-137 132-157 (312)
268 4gq2_M Nucleoporin NUP120; bet 84.2 13 0.00045 38.5 13.4 46 115-160 898-948 (950)
269 4gq2_M Nucleoporin NUP120; bet 82.7 24 0.00082 36.6 14.6 52 86-141 816-867 (950)
270 2wpv_A GET4, UPF0363 protein Y 80.9 28 0.00095 30.4 23.1 27 146-172 132-158 (312)
271 3lpz_A GET4 (YOR164C homolog); 79.2 33 0.0011 30.2 26.4 27 145-171 133-159 (336)
272 2qx5_A Nucleoporin NIC96; mRNA 75.5 64 0.0022 31.6 15.9 24 361-385 547-570 (661)
273 3esl_A Checkpoint serine/threo 74.4 32 0.0011 27.6 10.7 49 96-144 95-145 (202)
274 2qx5_A Nucleoporin NIC96; mRNA 69.7 88 0.003 30.7 14.2 37 326-380 448-484 (661)
275 1wy6_A Hypothetical protein ST 69.1 34 0.0011 25.6 14.6 26 54-79 15-40 (172)
276 3ax2_A Mitochondrial import re 67.3 18 0.00061 23.5 5.6 30 293-322 23-52 (73)
277 3ax2_A Mitochondrial import re 63.9 21 0.00071 23.2 5.5 31 255-285 22-52 (73)
278 4a1g_A Mitotic checkpoint seri 62.1 50 0.0017 25.1 11.0 50 304-353 82-133 (152)
279 2ijq_A Hypothetical protein; s 60.0 57 0.0019 25.1 8.5 59 50-108 36-103 (161)
280 4aez_C MAD3, mitotic spindle c 57.9 44 0.0015 27.4 7.7 74 304-387 131-207 (223)
281 2ijq_A Hypothetical protein; s 57.1 64 0.0022 24.8 8.7 60 84-143 36-104 (161)
282 3t5v_B Nuclear mRNA export pro 57.0 27 0.00092 32.4 7.2 62 51-112 181-253 (455)
283 3uzd_A 14-3-3 protein gamma; s 55.1 92 0.0031 26.0 15.6 29 117-145 7-35 (248)
284 2w2u_A Hypothetical P60 katani 53.5 16 0.00054 24.5 3.7 17 57-73 30-46 (83)
285 2crb_A Nuclear receptor bindin 52.9 28 0.00097 23.6 4.7 28 287-314 15-42 (97)
286 3t5v_B Nuclear mRNA export pro 51.9 68 0.0023 29.7 8.9 64 220-283 180-254 (455)
287 1om2_A Protein (mitochondrial 51.8 28 0.00097 23.9 4.8 31 292-322 25-55 (95)
288 2wvi_A Mitotic checkpoint seri 51.6 81 0.0028 24.3 11.2 51 268-319 78-128 (164)
289 2v6y_A AAA family ATPase, P60 51.5 17 0.0006 24.3 3.7 16 58-73 23-38 (83)
290 3esl_A Checkpoint serine/threo 50.1 98 0.0034 24.8 15.0 68 113-181 79-148 (202)
291 3ubw_A 14-3-3E, 14-3-3 protein 49.2 1.2E+02 0.004 25.5 17.9 31 115-145 32-62 (261)
292 4b4t_O 26S proteasome regulato 48.7 1.5E+02 0.0053 26.7 12.0 22 221-242 132-153 (393)
293 3t5x_A PCI domain-containing p 48.7 38 0.0013 27.3 6.1 27 85-111 19-45 (203)
294 2crb_A Nuclear receptor bindin 48.1 24 0.00082 24.0 3.8 26 13-38 17-42 (97)
295 3ubw_A 14-3-3E, 14-3-3 protein 47.3 1.3E+02 0.0043 25.3 14.5 46 165-210 173-227 (261)
296 2br9_A 14-3-3E, 14-3-3 protein 47.2 1.2E+02 0.0041 25.0 17.0 44 115-158 6-50 (234)
297 1om2_A Protein (mitochondrial 45.5 37 0.0013 23.3 4.6 28 153-180 25-52 (95)
298 3t5x_A PCI domain-containing p 45.5 65 0.0022 25.9 7.0 87 251-345 15-103 (203)
299 3iqu_A 14-3-3 protein sigma; s 44.9 1.3E+02 0.0045 24.8 16.7 47 268-314 151-203 (236)
300 2rpa_A Katanin P60 ATPase-cont 42.9 18 0.00063 23.8 2.7 26 14-39 15-40 (78)
301 2br9_A 14-3-3E, 14-3-3 protein 42.5 1.4E+02 0.0049 24.6 14.5 45 12-56 6-50 (234)
302 2w2u_A Hypothetical P60 katani 41.1 40 0.0014 22.5 4.2 24 292-315 24-47 (83)
303 1o9d_A 14-3-3-like protein C; 40.9 1.6E+02 0.0055 24.7 15.0 45 12-56 9-55 (260)
304 3uzd_A 14-3-3 protein gamma; s 39.2 1.7E+02 0.0057 24.4 14.9 59 12-70 5-64 (248)
305 2v6y_A AAA family ATPase, P60 38.3 46 0.0016 22.2 4.2 22 294-315 18-39 (83)
306 3re2_A Predicted protein; meni 35.6 2.4E+02 0.0081 25.1 10.6 44 235-278 276-324 (472)
307 4aez_C MAD3, mitotic spindle c 35.6 1.8E+02 0.0062 23.7 11.6 52 267-319 131-182 (223)
308 2rpa_A Katanin P60 ATPase-cont 35.0 43 0.0015 22.1 3.5 26 291-316 16-41 (78)
309 3bu8_A Telomeric repeat-bindin 34.8 1.8E+02 0.0063 23.6 9.0 46 294-339 121-166 (235)
310 4a1g_A Mitotic checkpoint seri 34.5 1.5E+02 0.0052 22.5 13.7 32 113-144 100-131 (152)
311 2npm_A 14-3-3 domain containin 34.5 2.1E+02 0.0071 24.1 15.0 45 12-56 29-76 (260)
312 4a5x_A MITD1, MIT domain-conta 34.0 75 0.0026 21.3 4.7 25 291-315 20-44 (86)
313 1bpo_A Protein (clathrin); cla 33.9 2.3E+02 0.0077 26.3 9.0 46 24-72 342-387 (494)
314 1o9d_A 14-3-3-like protein C; 33.8 2.1E+02 0.0073 24.0 18.6 47 268-314 153-205 (260)
315 2uwj_G Type III export protein 32.9 1.2E+02 0.0043 21.1 8.1 73 263-344 19-91 (115)
316 2p58_C Putative type III secre 32.5 1.3E+02 0.0044 21.1 8.5 73 263-344 20-92 (116)
317 2cfu_A SDSA1; SDS-hydrolase, l 30.9 1.4E+02 0.0049 29.2 8.1 49 81-129 450-498 (658)
318 3u84_A Menin; MLL, JUND, ledgf 30.6 2.5E+02 0.0085 25.5 8.4 44 235-278 298-346 (550)
319 3bu8_A Telomeric repeat-bindin 30.4 2.2E+02 0.0075 23.1 8.6 34 224-257 122-155 (235)
320 1wfd_A Hypothetical protein 15 28.2 82 0.0028 21.5 4.2 24 292-315 20-43 (93)
321 2v6x_A Vacuolar protein sortin 27.6 1.1E+02 0.0037 20.3 4.7 24 292-315 18-41 (85)
322 2p58_C Putative type III secre 27.0 1.6E+02 0.0056 20.5 9.5 75 24-105 20-94 (116)
323 2cfu_A SDSA1; SDS-hydrolase, l 26.9 1.3E+02 0.0044 29.5 7.0 51 290-340 452-502 (658)
324 4b4t_O 26S proteasome regulato 25.7 3.7E+02 0.013 24.2 10.5 18 55-72 85-102 (393)
325 2uwj_G Type III export protein 25.6 1.7E+02 0.0059 20.4 7.8 75 24-105 19-93 (115)
326 2npm_A 14-3-3 domain containin 25.4 3E+02 0.01 23.1 19.4 49 267-315 173-226 (260)
327 2cpt_A SKD1 protein, vacuolar 25.0 1.2E+02 0.004 21.9 4.7 22 294-315 25-46 (117)
328 3efz_A 14-3-3 protein; 14-3-3, 23.1 1.5E+02 0.0053 24.9 5.6 37 280-316 189-226 (268)
329 4gq4_A Menin; tumor suppressor 21.8 2.8E+02 0.0097 25.2 7.2 44 235-278 283-331 (489)
330 3u84_A Menin; MLL, JUND, ledgf 21.1 4.7E+02 0.016 23.8 9.5 23 292-314 323-345 (550)
331 3bqo_A Telomeric repeat-bindin 20.3 1.4E+02 0.0047 23.9 4.5 38 53-90 124-161 (211)
332 2cwy_A Hypothetical protein TT 20.2 2.1E+02 0.0073 19.5 6.9 26 294-319 8-33 (94)
333 2wvi_A Mitotic checkpoint seri 20.1 3E+02 0.01 21.1 12.2 33 112-144 94-126 (164)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-45 Score=347.77 Aligned_cols=369 Identities=14% Similarity=0.124 Sum_probs=355.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG 94 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 94 (476)
+.+|..++..|++++|+..|.+++... |+++.++..++.++...|++++|...+++++..+|.++.+|..+|.++...|
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 457899999999999999999999988 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 011845 175 VQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI 254 (476)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 254 (476)
+...|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845 255 AWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ 334 (476)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 334 (476)
.+|.++...|++++|+..|+++++..|+++. .+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999865 4778899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhhh---hcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 335 GNSVRAEEIRNLYFQQRTE---VVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 335 g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
|++++|...++++++..|. .+..++.++...|++++|+..|+++++++|++..
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 9999999999999987664 4578899999999999999999999999998654
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-44 Score=340.58 Aligned_cols=361 Identities=17% Similarity=0.191 Sum_probs=344.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++++.+|+++.++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 24 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (388)
T 1w3b_A 24 QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH
Confidence 3567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++..++..+|.++...
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRR 241 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 241 (476)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++
T Consensus 183 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcH
Q 011845 242 ASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSY 321 (476)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 321 (476)
+++..|+++.++..+|.++...|++++|+..|+++++..|++.. .+..+|.++...|++++|+..|+++++.+|++.
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 339 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999999999999999999999999999854 477889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh---cchhhhhhhhcc
Q 011845 322 ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV---VDDASWVMGFMD 366 (476)
Q Consensus 322 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~g 366 (476)
.++..++.++...|++++|...++++++..|.. +..+|.++..+|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999999999999876643 344555554443
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-40 Score=327.46 Aligned_cols=377 Identities=12% Similarity=0.096 Sum_probs=310.4
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC---------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT---------------QGENPYIWQCWAVLENKLGNIGKARELFDAS 72 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 72 (476)
|.++.++..++.+|...|++++|+.+|++..... .+.++.+|..+|.++.+.|++++|+..|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566667777777777777777777776532110 0113566777777777777777777777777
Q ss_pred hhcCcCcHHHHHHHHH--------------------------------------HHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845 73 TVADKGHIAAWHGWAV--------------------------------------LELRQGNIKKARQLLAKGLKFCGGNE 114 (476)
Q Consensus 73 ~~~~p~~~~~~~~la~--------------------------------------~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (476)
+..+|.+..++..++. .|.+.|++++|+.+|+++++. |.+.
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH
Confidence 7777776666555533 233556677777777777666 5677
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
.++..++.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..+++++...|++..++..++.+|..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 78888889999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYE 274 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 274 (476)
.|++++|+.+|+++++..|.+..++..++.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 011845 275 RALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI------NSQS-YITWMTWAQLEEDQGNSVRAEEIRNLY 347 (476)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 347 (476)
++++..|.++. .+..+|.++...|++++|+++|+++++. +|++ ..+|..++.++...|++++|...++++
T Consensus 466 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 466 SSYALFQYDPL---LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCChH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999888754 4777899999999999999999999887 5665 688999999999999999999999998
Q ss_pred Hhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCCC
Q 011845 348 FQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKE 388 (476)
Q Consensus 348 ~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 388 (476)
++..| ..+..++.++...|++++|+..|+++++++|+++..
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 88655 456778889999999999999999999999987543
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.3e-39 Score=311.39 Aligned_cols=362 Identities=12% Similarity=0.010 Sum_probs=319.9
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
+++..+|.++..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 4677899999999999999999999999999999999887 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH---HHHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---YIYQTL------------ALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
++..+|.++...|++++|+..|+++++..|.+. .++..+ |.++...|++++|+..|++++...|.
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999988 776655 66699999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH----
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSL---- 222 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 222 (476)
++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845 223 --------ALLEYKYSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290 (476)
Q Consensus 223 --------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 290 (476)
|.++...|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..+++++...|++.. ++
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN---AL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---HH
Confidence 99999999999999999999999999854 7888999999999999999999999999998854 57
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcc----
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMD---- 366 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g---- 366 (476)
..+|.++...|++++|+.+|+++++++|++..++..++.+....++.. ....+..+|
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------------------~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ-------------------KRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH-------------------SCCSGGGSCSSTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc-------------------chhHHHHhCCCcc
Confidence 788999999999999999999999999999999998887765543211 112233333
Q ss_pred -cchHHHHHHHH-HhccccCCC
Q 011845 367 -IIDPALDRIKQ-LLNLEKSSY 386 (476)
Q Consensus 367 -~~~~A~~~~~~-al~~~p~~~ 386 (476)
..+++.+.|++ +++..|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 56777888886 788888754
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=323.42 Aligned_cols=374 Identities=13% Similarity=0.099 Sum_probs=347.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
.+..++.+|..++..|++++|+..|++++... | ++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 46789999999999999999999999999988 5 699999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCc--------------------------------------------------------
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGN-------------------------------------------------------- 113 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~-------------------------------------------------------- 113 (476)
+...|++++|+..|++++...|.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998877632
Q ss_pred -----------------------HHHHHHHHHHHHH---hccHHHHHHHHHHHHh-----c--C-------CCchhHHHH
Q 011845 114 -----------------------EYIYQTLALLEAK---ANRYEQARNLFRQATK-----C--N-------PKSCASWIA 153 (476)
Q Consensus 114 -----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~ 153 (476)
..++..+|.++.. .|++++|+..|++++. . . |.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 6667777887776 8999999999999999 5 3 445678999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 233 (476)
+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 234 LARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
+|+..|+++++..|.++.++..+|.++...|++++|+..|+++++..|++.. .+..+|.++...|++++|+.+|+++
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---VPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998865 4778899999999999999999999
Q ss_pred HhhCCCcHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhcc
Q 011845 314 LNINSQSYI------TWMTWAQLEED---QGNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNL 381 (476)
Q Consensus 314 l~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 381 (476)
+...|++.. ++..++.++.. .|++++|...+++++...| ..+..++.++...|++++|+..|++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999988855 99999999999 9999999999999998665 34567899999999999999999999999
Q ss_pred ccCCCCCC
Q 011845 382 EKSSYKEP 389 (476)
Q Consensus 382 ~p~~~~~~ 389 (476)
+|+++...
T Consensus 479 ~~~~~~~~ 486 (514)
T 2gw1_A 479 ARTMEEKL 486 (514)
T ss_dssp CSSHHHHH
T ss_pred ccccHHHH
Confidence 99876543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-40 Score=326.29 Aligned_cols=376 Identities=14% Similarity=0.097 Sum_probs=317.5
Q ss_pred ccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------
Q 011845 5 DYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVAD-------- 76 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------- 76 (476)
...|++ ..++.+|.++...|++++|+..|++++.. +.++.++..++.+|.+.|++++|+..|++.....
T Consensus 112 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 112 DITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp HHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred hhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence 345533 56667777777777777777777776543 4567777777777777777777777777533222
Q ss_pred --------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH--------------------------
Q 011845 77 --------KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL-------------------------- 122 (476)
Q Consensus 77 --------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~-------------------------- 122 (476)
+.+..+|..+|.+|.+.|++++|+..|+++++.+|.+..++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 2246677777777777777777777777777777777766655533
Q ss_pred ------------HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 123 ------------LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 123 ------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
.|...|++++|+..|+++++. |.+..++..++.++...|++++|+..|++++...|.+..++..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 333567777777777777766 6677888999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (476)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++..|.+..+|..++.++...|++++|+
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 271 ELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
..|++++...|++... +..+|.++...|++++|+++|+++++..|.++.++..++.++.+.|++++|..+++++++.
T Consensus 428 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLP---YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHTTTTCSHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999988554 6778999999999999999999999999999999999999999999999999999999886
Q ss_pred h----------hhhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 351 R----------TEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 351 ~----------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
. ...+..++.++...|++++|+..|+++++++|+++.
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 3 235577899999999999999999999999987654
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.4e-39 Score=315.93 Aligned_cols=373 Identities=13% Similarity=0.110 Sum_probs=328.2
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
.+..++.+|..++..|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 46789999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHH-----------------------------------------------------
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYI----------------------------------------------------- 116 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~----------------------------------------------------- 116 (476)
+...|++++|+..|+ ++...|+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999995 77666653321
Q ss_pred ---------------HHHH--------HHHHHHhccHHHHHHHHHHHHhcCCCchh-------HHHHHHHHHHHhccHHH
Q 011845 117 ---------------YQTL--------ALLEAKANRYEQARNLFRQATKCNPKSCA-------SWIAWSQMEMQQENNLA 166 (476)
Q Consensus 117 ---------------~~~l--------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~~~~~~ 166 (476)
...+ +......|++++|+..|+++++..|+++. ++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1112 22223346899999999999999999865 57778888999999999
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 011845 167 ARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID 246 (476)
Q Consensus 167 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 246 (476)
|+..|++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH----
Q 011845 247 PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYI---- 322 (476)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 322 (476)
|+++.++..+|.++...|++++|+..|+++++..|++... +..+|.++...|++++|+.+|++++...|++..
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV---PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 9999999999999999999999999999999999998654 677799999999999999999999998876553
Q ss_pred --HHHHHHHHHHHc----------CChHHHHHHHHHHHhhhh---hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 323 --TWMTWAQLEEDQ----------GNSVRAEEIRNLYFQQRT---EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 323 --~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
.+..++.++... |++++|...+++++...| ..+..+|.++...|++++|+..|++++++.|+++.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 356778899998 999999999999998766 45678999999999999999999999999998654
Q ss_pred C
Q 011845 388 E 388 (476)
Q Consensus 388 ~ 388 (476)
.
T Consensus 498 ~ 498 (537)
T 3fp2_A 498 K 498 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.8e-38 Score=290.73 Aligned_cols=322 Identities=12% Similarity=0.017 Sum_probs=291.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
+++.++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 56789999999999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCC---CcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCG---GNEYIYQTL------------ALLEAKANRYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
+...|++++|+..|+++++..| .+..++..+ |.++...|++++|+..++++++..|.++.++..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999 888888777 6888999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH------------HH
Q 011845 155 SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQ------------SL 222 (476)
Q Consensus 155 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l 222 (476)
|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++. .+
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887654 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH
Q 011845 223 ALLEYKYSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ 298 (476)
Q Consensus 223 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 298 (476)
|.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++..|++.. ++..+|.++.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~ 317 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN---ALKDRAEAYL 317 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHH
Confidence 77889999999999999999999988774 4567889999999999999999999999888844 5777899999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 011845 299 RVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQG 335 (476)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 335 (476)
..|++++|..+|+++++.+|++..++..++.+....+
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888776544
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-38 Score=305.28 Aligned_cols=350 Identities=14% Similarity=0.121 Sum_probs=325.6
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC---
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG--- 78 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--- 78 (476)
++++.+| ++.++..+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.
T Consensus 31 ~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 31 WALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 3566778 68999999999999999999999999999998 899999999999999999999999999999887752
Q ss_pred ----------------------------------------------------------------------------cHHH
Q 011845 79 ----------------------------------------------------------------------------HIAA 82 (476)
Q Consensus 79 ----------------------------------------------------------------------------~~~~ 82 (476)
+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
T 2gw1_A 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188 (514)
T ss_dssp GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence 2667
Q ss_pred HHHHHHHHHH---hCCHHHHHHHHHHhhc-----c--C-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845 83 WHGWAVLELR---QGNIKKARQLLAKGLK-----F--C-------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 83 ~~~la~~~~~---~~~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
+..+|.++.. .|++++|+..|++++. . . |.+..++..+|.++...|++++|+..|++++...|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 7778888776 8999999999999998 5 3 45567899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845 146 KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL 225 (476)
Q Consensus 146 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 225 (476)
. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus 269 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 347 (514)
T 2gw1_A 269 R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347 (514)
T ss_dssp C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHHHHH---
Q 011845 226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVLEQR--- 299 (476)
Q Consensus 226 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~~~~--- 299 (476)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+++.. ...+..+|.++..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998877541 1247788999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845 300 VGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 300 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
.|++++|+..|++++..+|++..++..++.++...|++++|...+++++...|..
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999876643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.9e-36 Score=291.00 Aligned_cols=326 Identities=13% Similarity=0.050 Sum_probs=295.1
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 011845 27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKG 106 (476)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 106 (476)
...+...+.+++... |.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445667777777777 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch---hHHHHH------------HHHHHHhccHHHHHHHH
Q 011845 107 LKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC---ASWIAW------------SQMEMQQENNLAARQLF 171 (476)
Q Consensus 107 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~ 171 (476)
++.+|.+..++..+|.+|...|++++|+..|++++...|++. .++..+ |.++...|++++|+..|
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999988 776655 66699999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH
Q 011845 172 ERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 172 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 251 (476)
++++...|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH------------HHHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845 252 VWIAW------------GWMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 252 ~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 318 (476)
.+..+ |.++...|++++|+.+|++++...|+++.. ...+..+|.++...|++++|+.++++++..+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 88766 999999999999999999999999987653 34678889999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 319 QSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 319 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
++..++..++.++...|++++|...++++++..|.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999886664
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=7.1e-36 Score=277.83 Aligned_cols=309 Identities=14% Similarity=0.066 Sum_probs=290.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHhcCC---CchhHHHHH------------HHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845 125 AKANRYEQARNLFRQATKCNP---KSCASWIAW------------SQMEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 189 (476)
...|++++|+..|+++++..| ++..++..+ |.++...|++++|+..+++++...|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 78999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH------------HHH
Q 011845 190 IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWI------------AWG 257 (476)
Q Consensus 190 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~ 257 (476)
.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++..++. .+|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988665 348
Q ss_pred HHHHHcCChhHHHHHHHHHHccCCCChhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 011845 258 WMEWKEGNLDTARELYERALSIDSTTESA-ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336 (476)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 336 (476)
.++...|++++|+..+++++...|+++.. ...+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999997654 23466789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhh
Q 011845 337 SVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 337 ~~~A~~~~~~~~~~~~~ 353 (476)
+++|...++++++..|+
T Consensus 322 ~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999887664
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.6e-37 Score=302.13 Aligned_cols=351 Identities=15% Similarity=0.111 Sum_probs=310.6
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++++.+|+++.+++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|+ ++..+|+...
T Consensus 50 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~ 127 (537)
T 3fp2_A 50 YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG 127 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence 4678899999999999999999999999999999999998 8999999999999999999999999996 6666665432
Q ss_pred HH--------------------------------------------------------------------HHH-------
Q 011845 82 AW--------------------------------------------------------------------HGW------- 86 (476)
Q Consensus 82 ~~--------------------------------------------------------------------~~l------- 86 (476)
.+ ..+
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 21 111
Q ss_pred -HHHHHHhCCHHHHHHHHHHhhccCCCcHH-------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845 87 -AVLELRQGNIKKARQLLAKGLKFCGGNEY-------IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME 158 (476)
Q Consensus 87 -a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 158 (476)
+......|++++|+..|+++++..|.++. ++..+|.++...|++++|+..|++++...|+ ..++..+|.++
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 286 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHH
Confidence 22222345899999999999999999865 5778888999999999999999999999999 89999999999
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL 238 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 238 (476)
...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH---HHHHHHHHHHHHHh----------CCHHH
Q 011845 239 FRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA---ARCLQAWGVLEQRV----------GNLSA 305 (476)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~ 305 (476)
|+++++..|+++.++..+|.++...|++++|+..|+++++..|++... ...+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 999999999999999999999999999999999999999987655432 22356678899999 99999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845 306 ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV 355 (476)
Q Consensus 306 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 355 (476)
|+.+|+++++.+|++..++..++.++...|++++|...++++++..|...
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999999999999999999999999999777543
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=292.18 Aligned_cols=371 Identities=13% Similarity=0.062 Sum_probs=298.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT--------QGENPYIWQCWAVLENKLGNIGKARELFDASTVAD---- 76 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 76 (476)
..+..+..+|.++...|++++|++.|+++++.. .+....+|.++|.+|..+|++++|+..+++++.+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 346678899999999999999999999998641 25567789999999999999999999999998653
Q ss_pred ----cCcHHHHHHHHHHHHHh--CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCCCc
Q 011845 77 ----KGHIAAWHGWAVLELRQ--GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA---NRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 77 ----p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~ 147 (476)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++... ++.++|++.|+++++++|++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 34567888888777665 4799999999999999999999999999886654 66788999999999999999
Q ss_pred hhHHHHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845 148 CASWIAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223 (476)
Q Consensus 148 ~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 223 (476)
+.++..+|..+.. .|++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9999888876654 467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-------------------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 224 LLEYKY-------------------STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 224 ~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
.+|... +.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++..|++.
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 887643 3467899999999999999999999999999999999999999999999998877
Q ss_pred hHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---hhcchhhh
Q 011845 285 SAARCLQAWGVL-EQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---EVVDDASW 360 (476)
Q Consensus 285 ~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ 360 (476)
....++..+|.+ +...|++++|+..|++++++.|++......+ ..+..++++.+...| ..+..+|.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666666777765 4578999999999999999999987643332 234455666666554 45678999
Q ss_pred hhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 361 VMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
++...|++++|+++|++++++.|.+|.+.
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHCC--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 99999999999999999999999988754
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-35 Score=268.83 Aligned_cols=293 Identities=15% Similarity=0.130 Sum_probs=237.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
+.++.++..+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 56667777778777778888888888888887778777777777777788888888888888888888888888888888
Q ss_pred HHHHhc-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Q 011845 123 LEAKAN-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG 201 (476)
Q Consensus 123 ~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 201 (476)
++...| ++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 888888 7888888888888888888888888888888888888888888888888887777777888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845 202 KKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEID---------PRHQPVWIAWGWMEWKEGNLDTAREL 272 (476)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (476)
+..+++++...|.++.++..+|.++...|++++|+..++++++.. |..+.++..+|.++...|++++|+.+
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888888888888888888888888888888888888887765 56667888888888888999999999
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCChH
Q 011845 273 YERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE-EDQGNSV 338 (476)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~ 338 (476)
|+++++..|++.. ++..+|.++...|++++|..+|+++++.+|+++.++..++.++ ...|+.+
T Consensus 259 ~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSH---HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchH---HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9988888888754 4677788889999999999999999988898888888888887 4555543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.7e-35 Score=267.01 Aligned_cols=298 Identities=15% Similarity=0.099 Sum_probs=277.9
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHH
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAA 82 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 82 (476)
.+...|+++.+++.+|..++..|++++|+..|++++... |.+...+..++.++...|++++|+..+++++..+|.++.+
T Consensus 14 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp ------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 456678899999999999999999999999999999988 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 83 WHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 83 ~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
+..+|.++...| ++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++..|++..++..+|.++...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCH
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN---------PRDPVLLQSLALLEYKYSTA 232 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~ 232 (476)
|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999876 66778999999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH-HHhCCHH
Q 011845 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLE-QRVGNLS 304 (476)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 304 (476)
++|+.+|+++++..|+++.++..+|.++...|++++|+.+|+++++..|++... +..++.++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS---VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH---HHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH---HHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999999654 66678877 4555543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=3e-34 Score=268.08 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=226.6
Q ss_pred HHHHcCCHHHHHH-HHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 55 LENKLGNIGKARE-LFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 55 ~~~~~g~~~~A~~-~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
++...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445577777777 7777777666553 4567777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHH----------------HHHHHHH
Q 011845 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWH----------------VWGIFEA 193 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~l~~~~~ 193 (476)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 777777777777777777777777777777777777777777777777776655443 455555
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHH
Q 011845 194 NMGFIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE 271 (476)
Q Consensus 194 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (476)
..|++++|+..+++++...|. ++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888889999999999888888 788888899999999999999999999998888888889999999999999999999
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHcCChHHH
Q 011845 272 LYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS-----------YITWMTWAQLEEDQGNSVRA 340 (476)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 340 (476)
.|+++++..|++.. .+..+|.++...|++++|+.+|++++...|++ ..+|..++.++...|++++|
T Consensus 273 ~~~~al~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 273 AYRRALELQPGYIR---SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHCTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHhCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999988888744 46778999999999999999999999888877 78899999999999999999
Q ss_pred HHHHHHHHh
Q 011845 341 EEIRNLYFQ 349 (476)
Q Consensus 341 ~~~~~~~~~ 349 (476)
..++.+.+.
T Consensus 350 ~~~~~~~l~ 358 (368)
T 1fch_A 350 GAADARDLS 358 (368)
T ss_dssp HHHHTTCHH
T ss_pred HHhHHHHHH
Confidence 887665544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=1.3e-33 Score=263.85 Aligned_cols=296 Identities=19% Similarity=0.152 Sum_probs=264.0
Q ss_pred HHHHhcCCHHHHHH-HHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 19 KVLSKQSKVAEARA-IYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 19 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
.++...|+|++|+. .|++++... |.+ ...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFE-EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -------------CHHHHCCCCCC-SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcC-CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 36677899999999 999998876 444 467899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH----------------HHHHH
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI----------------AWSQM 157 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------------~la~~ 157 (476)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+. .++.+
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877664 45666
Q ss_pred HHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845 158 EMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235 (476)
Q Consensus 158 ~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 235 (476)
+ ..|++++|+..|++++...|. ++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 6 999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh--------HHHHHHHHHHHHHHhCCHHHHH
Q 011845 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES--------AARCLQAWGVLEQRVGNLSAAR 307 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~ 307 (476)
+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|++.. ...++..+|.++...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999999999999999999999999999999999999999999887621 1346788899999999999999
Q ss_pred HHHHHHHhh
Q 011845 308 RLFRSSLNI 316 (476)
Q Consensus 308 ~~~~~al~~ 316 (476)
.++++++..
T Consensus 351 ~~~~~~l~~ 359 (368)
T 1fch_A 351 AADARDLST 359 (368)
T ss_dssp HHHTTCHHH
T ss_pred HhHHHHHHH
Confidence 999887754
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=2.3e-31 Score=260.65 Aligned_cols=377 Identities=12% Similarity=0.141 Sum_probs=307.7
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA 81 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 81 (476)
++++.+|.+..+|..++.. ...|++++|..+|++++... |.+..+|..++..+...|++++|+.+|++++...| +..
T Consensus 4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~ 80 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID 80 (530)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH
T ss_pred hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH
Confidence 4678899999999999984 78999999999999999998 99999999999999999999999999999999999 677
Q ss_pred HHHHHHHHH-HHhCCHHHHHH----HHHHhhcc---CCCcHHHHHHHHHHHHH---------hccHHHHHHHHHHHHhcC
Q 011845 82 AWHGWAVLE-LRQGNIKKARQ----LLAKGLKF---CGGNEYIYQTLALLEAK---------ANRYEQARNLFRQATKCN 144 (476)
Q Consensus 82 ~~~~la~~~-~~~~~~~~A~~----~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~ 144 (476)
.|..++... ...|++++|.+ +|++++.. +|.+..+|..++..... .|+++.|+.+|++++. .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 888888644 45677776655 77777653 56677888888887765 7889999999999988 4
Q ss_pred CCch--hHHHHHHHH---------------------------------------------------------------HH
Q 011845 145 PKSC--ASWIAWSQM---------------------------------------------------------------EM 159 (476)
Q Consensus 145 p~~~--~~~~~la~~---------------------------------------------------------------~~ 159 (476)
|... ..|...... ..
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6432 222211110 00
Q ss_pred Hh------cc----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCC
Q 011845 160 QQ------EN----NLAARQLFERAVQASPKNRFAWHVWGIFEAN-------MGFID-------KGKKLLKIGHA-VNPR 214 (476)
Q Consensus 160 ~~------~~----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~ 214 (476)
.. ++ ...++..|++++...|.++.+|..++.++.. .|+++ +|+.+|++++. ..|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 00 11 1356778999999999999999999999886 78877 89999999997 7899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845 215 DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ-PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAW 293 (476)
Q Consensus 215 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 293 (476)
+..+|..++.++...|++++|+.+|+++++..|.++ .+|..++.++.+.|++++|+..|+++++..|..... +...
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~---~~~~ 396 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV---YVTA 396 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH---HHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH---HHHH
Confidence 999999999999999999999999999999999885 689999999999999999999999999988776433 3333
Q ss_pred HHH-HHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhh---h----hcchhhhhhhhc
Q 011845 294 GVL-EQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRT---E----VVDDASWVMGFM 365 (476)
Q Consensus 294 ~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~~~~~~~ 365 (476)
+.+ +...|++++|..+|+++++.+|+++.+|..++.++...|+.++|..++++++...+ + ++..........
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 443 34689999999999999999999999999999999999999999999999987532 2 344445556677
Q ss_pred ccchHHHHHHHHHhccccCC
Q 011845 366 DIIDPALDRIKQLLNLEKSS 385 (476)
Q Consensus 366 g~~~~A~~~~~~al~~~p~~ 385 (476)
|+.+.+..+++++++..|++
T Consensus 477 G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHCchh
Confidence 99999999999999998853
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=100.00 E-value=6.2e-30 Score=247.97 Aligned_cols=356 Identities=10% Similarity=0.036 Sum_probs=322.6
Q ss_pred CCCCchhHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcC
Q 011845 7 WPEDGRPYVALGKVLSK----QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKG 78 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~ 78 (476)
.++++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++... .
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 46788999999999998 89999999999999875 478999999999999 99999999999999874 5
Q ss_pred cHHHHHHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhH
Q 011845 79 HIAAWHGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 79 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 150 (476)
++.+++.+|.+|.. .+++++|+.+|+++... .++.++..+|.+|.. .+++++|+.+|+++++. .++.+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 78999999999999 89999999999999875 578999999999998 88999999999999986 57899
Q ss_pred HHHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 011845 151 WIAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSL 222 (476)
Q Consensus 151 ~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l 222 (476)
+..+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 261 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 9999999998 89999999999999875 467899999999997 89999999999999876 568899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHccCCCChhHHHHHHHH
Q 011845 223 ALLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKE-----GNLDTARELYERALSIDSTTESAARCLQAW 293 (476)
Q Consensus 223 a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 293 (476)
|.++.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++.+..+. ..+..+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-----~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-----TAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-----HHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-----HHHHHH
Confidence 999999 89999999999999876 5789999999999998 9999999999999987432 357888
Q ss_pred HHHHHHhC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhh-hhhhcchhhhhhhh-
Q 011845 294 GVLEQRVG---NLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQ-RTEVVDDASWVMGF- 364 (476)
Q Consensus 294 ~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~- 364 (476)
|.++...| ++++|+.+|+++++. .++.+++.++.++.. .+++++|...++++.+. .+.....+|.++..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 99999877 899999999999987 678999999999999 89999999999999885 45666789999988
Q ss_pred ---cccchHHHHHHHHHhccccC
Q 011845 365 ---MDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 365 ---~g~~~~A~~~~~~al~~~p~ 384 (476)
.+++++|+.+|+++++..|+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999999854
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=262.04 Aligned_cols=337 Identities=14% Similarity=0.090 Sum_probs=275.9
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccC-------CCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcC
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQAT-------QGENPYIWQCWAVLENKL--GNIGKARELFDASTVAD 76 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~ 76 (476)
.+|.....+..+|.+|...|++++|+.+|++++... .+..+.++..+|.++... +++++|+.+|++++..+
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 367777889999999999999999999999998642 134577888888777665 47999999999999999
Q ss_pred cCcHHHHHHHHHHHHH---hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchh
Q 011845 77 KGHIAAWHGWAVLELR---QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 77 p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 149 (476)
|+++.++..++.++.. .++.++|+..++++++++|.+..++..+|..+.. .|++++|+.++++++..+|..+.
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~ 248 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH
Confidence 9999999999888654 5777899999999999999999999888876655 46788999999999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHh
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM-------------------GFIDKGKKLLKIGHA 210 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~ 210 (476)
++..+|.++...|++++|+..++++++..|+++.++..+|.+|... +.+++|+..+++++.
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999987543 346789999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HHHHHHHH-HHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 211 VNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP---VWIAWGWM-EWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 211 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
.+|.+..++..+|.++...|++++|+.+|+++++..|++.. ++..+|.+ +...|++++|+..|++++++.|+....
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 99999999999999999999999999999999999887543 45666654 457899999999999999999998543
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845 287 ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV 355 (476)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 355 (476)
.. ....+..++++++..+|+++.++..+|.++...|++++|++.|+++++..+...
T Consensus 409 ~~-------------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 409 EK-------------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HH-------------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HH-------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 22 224456778899999999999999999999999999999999999998665443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=7e-33 Score=258.57 Aligned_cols=269 Identities=16% Similarity=0.090 Sum_probs=193.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
+...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34457778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhccHHHHHHHHHHHHhcCCCchhHHHHH----------HHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Q 011845 125 AKANRYEQARNLFRQATKCNPKSCASWIAW----------SQMEMQQENNLAARQLFERAVQASPK--NRFAWHVWGIFE 192 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~ 192 (476)
...|++++|+..|+++++..|++...+..+ |.++...|++++|+..|++++...|. ++.++..+|.++
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 888888888888888888777665555444 77777777777777777777777777 677777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL 272 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (476)
...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCCCChh---------HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 273 YERALSIDSTTES---------AARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 273 ~~~a~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
|++++++.|+... ...++..++.++...|+.+.+..+.++.
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 7777777665322 1234555566666666666555555443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=1.7e-32 Score=255.86 Aligned_cols=268 Identities=13% Similarity=0.058 Sum_probs=246.0
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
+...++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34559999999999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHH----------HHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQT----------LALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQM 157 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~ 157 (476)
+...|++++|+..|+++++..|.+..++.. +|.++...|++++|+.+|++++...|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999999999876655554 499999999999999999999999999 89999999999
Q ss_pred HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011845 158 EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARK 237 (476)
Q Consensus 158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 237 (476)
+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 238 LFRRASEIDPR------------HQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 238 ~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
.|++++++.|+ +..+|..++.++...|+.+.|.....+.+.
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999876 367899999999999999999887776443
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=5.7e-32 Score=250.37 Aligned_cols=259 Identities=16% Similarity=0.108 Sum_probs=202.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCcCcH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVADKGHI 80 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~ 80 (476)
.++..+|++..++..+|.++...|++++|+..|++++... |.+..+|+.+|.++...|+ +++|+..|++++..+|++.
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 3567777778888888888888888888888888888777 7788888888888888885 8888888888888888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
.+|+.+|.++...|++++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++..
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred -hccHHHH-----HHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--
Q 011845 161 -QENNLAA-----RQLFERAVQASPKNRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS-- 230 (476)
Q Consensus 161 -~~~~~~A-----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-- 230 (476)
.|..++| +..|++++.++|++..+|+.++.++...| ++++|+..+.++ +.+|+++.++..+|.++...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcc
Confidence 4554666 47777888888888778888887777776 577777777776 777777777777777777763
Q ss_pred -------CHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHH
Q 011845 231 -------TANLARKLFRRA-SEIDPRHQPVWIAWGWMEWK 262 (476)
Q Consensus 231 -------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 262 (476)
.+++|+.+|+++ ++.+|.....|..++..+..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 247777777777 77777777777777766654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=100.00 E-value=1.2e-31 Score=245.96 Aligned_cols=285 Identities=15% Similarity=0.098 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344555555555555555555555555554 4555555555555555555555555555555555555555555555555
Q ss_pred HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH-HH-HHHHhccHHHHHH
Q 011845 92 RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW-SQ-MEMQQENNLAARQ 169 (476)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-a~-~~~~~~~~~~A~~ 169 (476)
..|++++|+..+++++...|.+...+..+.... |... ....+ +. ++...|++++|+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDID-DLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHH-HHHHHHHhHHHHHcccHHHHHH
Confidence 555555555555555555554444333330000 0000 00011 33 4556666666666
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 249 (476)
.+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTT---------ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 318 (476)
+.++..+|.++...|++++|+..|++++...|+. ......+..+|.++...|++++|..++++++...|
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 6666666666666666666666666666666651 11233456667777777777777777666665544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=100.00 E-value=2.6e-31 Score=243.74 Aligned_cols=286 Identities=17% Similarity=0.098 Sum_probs=227.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
+...++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHH-HH-HHHHcCCHHHHH
Q 011845 125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVW-GI-FEANMGFIDKGK 202 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~ 202 (476)
...|++++|+..+++++...|.+...+..+.... |... ....+ +. ++...|++++|+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD--------------------VDID-DLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------------CCTTSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------HHHH-HHHHHHHhHHHHHcccHHHHH
Confidence 7777777777777777777666655444331111 1111 11133 44 578889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 011845 283 TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------------SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQ 350 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 350 (476)
+.. .+..+|.++...|++++|+.+|++++...|+ +..++..++.++...|++++|..++++++..
T Consensus 239 ~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 239 YVR---VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CHH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 854 4778899999999999999999999999999 8999999999999999999999998877776
Q ss_pred hhhh
Q 011845 351 RTEV 354 (476)
Q Consensus 351 ~~~~ 354 (476)
.+..
T Consensus 316 ~~~~ 319 (327)
T 3cv0_A 316 FAKE 319 (327)
T ss_dssp HHHH
T ss_pred cchh
Confidence 5543
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=3e-31 Score=245.53 Aligned_cols=259 Identities=9% Similarity=0.069 Sum_probs=235.0
Q ss_pred HhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCCCchhH
Q 011845 72 STVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR-YEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 72 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~ 150 (476)
++..+|++..+|..+|.++...|++++|+..|++++.++|.+..+|..+|.++...|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3567788889999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Q 011845 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK-Y 229 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~ 229 (476)
|..+|.++...|++++|+..|++++.++|++..+|+.+|.++...|++++|+..|+++++++|.+..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCHHHH-----HHHHHHHhccCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC-
Q 011845 230 STANLA-----RKLFRRASEIDPRHQPVWIAWGWMEWKEG--NLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG- 301 (476)
Q Consensus 230 ~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g- 301 (476)
|..++| +.+|++++.++|++..+|+.++.++...| ++++|++.++++ +.+|++.. ++..+|.++...|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~---al~~La~~~~~~~~ 324 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY---LIAFLVDIYEDMLE 324 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH---HHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH---HHHHHHHHHHHHhc
Confidence 554777 58999999999999999999999999988 699999999988 88888744 4677799999875
Q ss_pred --------CHHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHc
Q 011845 302 --------NLSAARRLFRSS-LNINSQSYITWMTWAQLEEDQ 334 (476)
Q Consensus 302 --------~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~ 334 (476)
.+++|+++|+++ ++++|.....|..++..+...
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 999999999999998877654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=4.5e-27 Score=227.87 Aligned_cols=352 Identities=13% Similarity=0.047 Sum_probs=305.7
Q ss_pred CCchhHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcCcH
Q 011845 9 EDGRPYVALGKVLSK----QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKGHI 80 (476)
Q Consensus 9 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 80 (476)
+++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++... .++
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 147 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRD 147 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 678899999999999 99999999999999875 478999999999999 89999999999999875 578
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhHHH
Q 011845 81 AAWHGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCASWI 152 (476)
Q Consensus 81 ~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 152 (476)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .++.++.
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 223 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence 999999999998 88999999999999876 579999999999998 89999999999999886 4678999
Q ss_pred HHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845 153 AWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224 (476)
Q Consensus 153 ~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 224 (476)
.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~ 299 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAH 299 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 99999997 89999999999999875 567889999999998 89999999999999875 57899999999
Q ss_pred HHHHc-----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845 225 LEYKY-----STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG---NLDTARELYERALSIDSTTESAARCLQAWGVL 296 (476)
Q Consensus 225 ~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~ 296 (476)
++... +++++|+.+|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .+ ...+..+|.+
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE---KAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC---HHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC---HHHHHHHHHH
Confidence 99998 9999999999999986 46789999999999877 899999999999987 33 3357888999
Q ss_pred HHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhhh------hhcchhhhhh
Q 011845 297 EQR----VGNLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQRT------EVVDDASWVM 362 (476)
Q Consensus 297 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~ 362 (476)
|.. .+++++|+.+|+++++. .++.++..++.++.. .+++++|...|+++....+ .....++.++
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 999 89999999999999886 468899999999999 8999999999999998762 2223344443
Q ss_pred hhcccchHHHHHHHHHhccccC
Q 011845 363 GFMDIIDPALDRIKQLLNLEKS 384 (476)
Q Consensus 363 ~~~g~~~~A~~~~~~al~~~p~ 384 (476)
. .+.+.|.+..++.++..|+
T Consensus 451 ~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 451 A--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp H--HHHHHHHHHHHHHHHHHCH
T ss_pred H--hHHHHHHHHHHHHHHHHHH
Confidence 3 2345555555555554443
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=3e-28 Score=238.53 Aligned_cols=346 Identities=14% Similarity=0.196 Sum_probs=292.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHH-HHHcCCHHHHHH----HHHHHhh--
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVL-ENKLGNIGKARE----LFDASTV-- 74 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~----~~~~~~~-- 74 (476)
++++.+|.++.+|..++..+...|++++|..+|++++... | +..+|..++.. ....|++++|.+ .|++++.
T Consensus 37 ~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~ 114 (530)
T 2ooe_A 37 RLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-L-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI 114 (530)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-C-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999999999999999998 6 67889888854 445688777765 7777764
Q ss_pred -cCcCcHHHHHHHHHHHHH---------hCCHHHHHHHHHHhhccCCCcH--HHHHHHHHH-------------------
Q 011845 75 -ADKGHIAAWHGWAVLELR---------QGNIKKARQLLAKGLKFCGGNE--YIYQTLALL------------------- 123 (476)
Q Consensus 75 -~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~------------------- 123 (476)
.+|.+..+|..++..... .|+++.|..+|+++++ .|... ..|......
T Consensus 115 g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~ 193 (530)
T 2ooe_A 115 GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRD 193 (530)
T ss_dssp TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHH
Confidence 356678888888887765 7899999999999998 46432 222211110
Q ss_pred --------------------------------------------HHHh------cc----HHHHHHHHHHHHhcCCCchh
Q 011845 124 --------------------------------------------EAKA------NR----YEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 124 --------------------------------------------~~~~------g~----~~~A~~~~~~~~~~~p~~~~ 149 (476)
.... ++ ...++..|++++...|.++.
T Consensus 194 ~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~ 273 (530)
T 2ooe_A 194 YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD 273 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHH
Confidence 0000 11 13667889999999999999
Q ss_pred HHHHHHHHHHH-------hccHH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845 150 SWIAWSQMEMQ-------QENNL-------AARQLFERAVQ-ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR 214 (476)
Q Consensus 150 ~~~~la~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 214 (476)
+|+.+|.++.. .|+++ +|+.+|+++++ ..|++..+|..++.++...|++++|..+|++++...|.
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 99999999986 79987 99999999997 79999999999999999999999999999999999999
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHccCCCChhHHHHHHH
Q 011845 215 DP-VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM-EWKEGNLDTARELYERALSIDSTTESAARCLQA 292 (476)
Q Consensus 215 ~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 292 (476)
++ .+|..++.++...|++++|+.+|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++. ++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~---~~~~ 430 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE---YVLA 430 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHH---HHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHH---HHHH
Confidence 86 6999999999999999999999999999999888887777766 34689999999999999999999855 4677
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSY----ITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
++.++...|+.++|..+|++++...|.++ .+|..++.+....|+.+.+..++.++.+..|+
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 79999999999999999999999876654 48989999999999999999999999887774
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=7.5e-29 Score=222.32 Aligned_cols=276 Identities=9% Similarity=-0.045 Sum_probs=224.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHH
Q 011845 19 KVLSKQSKVAEARAIYAKGSQATQGEN-PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIK 97 (476)
Q Consensus 19 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 97 (476)
...+..|+|.+|+..++++.... |.+ .+....++.+|...|+++.|+..++. .+|....++..++..+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~-p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS-PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 45667899999999988876655 443 45667788899999999999887765 25556777888888888889999
Q ss_pred HHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 98 KARQLLAKGLKF--CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAV 175 (476)
Q Consensus 98 ~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 175 (476)
+|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..|++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988765 588889999999999999999999998887 7888899999999999999999999999999
Q ss_pred HcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845 176 QASPKNRFAWHVWG--IFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253 (476)
Q Consensus 176 ~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 253 (476)
+.+|++.......+ .++...|++++|+.+|++++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 98888764443333 3444558899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhH-HHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 254 IAWGWMEWKEGNLDT-ARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
.++|.++...|++.+ +..+++++++++|+++.+ ..+..+.+.|+++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~-------~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI-------KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHHHHHHHc
Confidence 999999988998876 567888899999988655 34455666666666554
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=3.2e-29 Score=223.57 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch----hHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC----ASWIAWS 155 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la 155 (476)
++.++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. .|.++ .++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 345667777777777777788877777777777777777788888888888888888888877 33333 3478888
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 011845 156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLA 235 (476)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 235 (476)
.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888999999999999999999999988898899999999555555699999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHccC---CCC--hhHHHHHHHHHHHHHHhCCHHHHH
Q 011845 236 RKLFRRASEIDPRHQPVWIAWGWMEWKEGN---LDTARELYERALSID---STT--ESAARCLQAWGVLEQRVGNLSAAR 307 (476)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~---~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 307 (476)
+..|+++++..|++..++..+|.++...|+ +++|+..|+++++.. |+. .....++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999998 888999999998875 332 223467888999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 011845 308 RLFRSSLNINSQSYITWMTWAQLEEDQG 335 (476)
Q Consensus 308 ~~~~~al~~~p~~~~~~~~l~~~~~~~g 335 (476)
.+|+++++++|+++.++-.++.+....+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999888877765544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=8.5e-28 Score=215.47 Aligned_cols=275 Identities=11% Similarity=-0.000 Sum_probs=238.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
....+..|+|..|+..++++...+|++ .+....++.+|...|+++.|+..++.. +|....++..++..+...|+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence 345678999999999999988888877 467788999999999999999887652 5667778899999999999999
Q ss_pred HHHHHHHHHHhc--CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 132 QARNLFRQATKC--NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 132 ~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
+|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..++.++...|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999876 599999999999999999999999999988 8899999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH
Q 011845 210 AVNPRDPVLLQSLA--LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA 287 (476)
Q Consensus 210 ~~~~~~~~~~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 287 (476)
..+|++.......+ .++...|++++|+.+|+++++..|+++.+++.+|.++...|++++|...|++++..+|+++..
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~- 236 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET- 236 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence 99998875544433 444456899999999999999999999999999999999999999999999999999999654
Q ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845 288 RCLQAWGVLEQRVGNLSA-ARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
+.++|.++...|+.++ +..+++++++++|+++.+. .+..+.+.++++..
T Consensus 237 --l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 --LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp --HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 7888999999999976 5789999999999999764 34445555555443
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=1e-28 Score=220.40 Aligned_cols=251 Identities=12% Similarity=0.052 Sum_probs=178.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc----HHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH----IAAWHG 85 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~ 85 (476)
+++.++.+|.+++..|++++|+..|+++++.. |.++.++..+|.++...|++++|+..+++++. .|.+ ..++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHH
Confidence 34567777888888888888888888887776 67777777888888888888888888888777 3333 344777
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL 165 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 165 (476)
+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|......++++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888887777777777777777777777777777777777777777777777777773344445777
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHcCCHHH
Q 011845 166 AARQLFERAVQASPKNRFAWHVWGIFEANMGF---IDKGKKLLKIGHAVN---PRD-----PVLLQSLALLEYKYSTANL 234 (476)
Q Consensus 166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~ 234 (476)
+|+..|+++++..|++..++..+|.++...|+ +++|+..++++++.. |+. ..++..+|.++...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777777777777777777 777777777777654 331 2456666777777777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 011845 235 ARKLFRRASEIDPRHQPVWIAWGWMEWK 262 (476)
Q Consensus 235 A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (476)
|+.+|+++++.+|+++.++..++.+...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 7777777777777776666666555443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-28 Score=215.85 Aligned_cols=226 Identities=13% Similarity=0.040 Sum_probs=113.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-------HHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-------IAAW 83 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~ 83 (476)
+..+..+|.++...|++++|+..|+++++.. .++.++..+|.++...|++++|+..+++++..+|.+ +.++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4455555555555555555555555555544 445555555555555555555555555555554443 3455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 55555555555555555555555554443 2334444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
+++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccC
Q 011845 244 EID 246 (476)
Q Consensus 244 ~~~ 246 (476)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 444
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=2e-28 Score=210.14 Aligned_cols=210 Identities=17% Similarity=0.066 Sum_probs=103.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
++...+.. .+. .....|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 82 ~~~~~~~~-------------~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 82 AYVALYRQ-------------AED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHT-------------CSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhh-------------hhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 55555000 000 0000155555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
..|+++++.+ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555 555555555555555555555555555555555555555555555555555555555555443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=2.5e-28 Score=209.51 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=149.4
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
|.++.+++.+|.++...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8899999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----------CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 88 VLELRQ-----------GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 88 ~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++.++..+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 999998 666666666666666666666666666666666666666666666666666 66666666666
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG 208 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 208 (476)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666554
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-28 Score=213.33 Aligned_cols=227 Identities=13% Similarity=-0.001 Sum_probs=140.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------HHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------EYIY 117 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~ 117 (476)
.+..+..+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34566666677777777777777777766666 666666666766666777777777766666665544 4566
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF 197 (476)
Q Consensus 118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 197 (476)
..+|.++...|++++|+..|++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666554 3445555566666666666666666655666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845 198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
+++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccC
Q 011845 278 SID 280 (476)
Q Consensus 278 ~~~ 280 (476)
++.
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 554
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=230.26 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIY 117 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~ 117 (476)
.+...|.++...|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.. .|....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334444444444444444444444444444332 23344444444444444444444444333 11223344
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhcc--------------------HHHHHHHH
Q 011845 118 QTLALLEAKANRYEQARNLFRQATKCNPKS------CASWIAWSQMEMQQEN--------------------NLAARQLF 171 (476)
Q Consensus 118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~ 171 (476)
..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 444455555555555555555444443322 2245555555555555 55555555
Q ss_pred HHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 172 ERAVQA------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLF 239 (476)
Q Consensus 172 ~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 239 (476)
++++.. .+....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 555543 12223455666666666666666666666666554332 226677777777777777777777
Q ss_pred HHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 240 RRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 240 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
++++...+.. ..++..+|.++...|++++|+.+|++++...+. ......++..+|.++...|++++|+.+|
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777665543 567778888888888888888888888876433 3333556778899999999999999999
Q ss_pred HHHHhhC------CCcHHHHHHHHHHHHHcCChHH
Q 011845 311 RSSLNIN------SQSYITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 311 ~~al~~~------p~~~~~~~~l~~~~~~~g~~~~ 339 (476)
++++++. +....++..++.++...|+...
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9988773 2335677888888888887644
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=228.71 Aligned_cols=297 Identities=13% Similarity=0.029 Sum_probs=256.8
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcC
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVA------DKG 78 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~ 78 (476)
.....++.+|.++...|++++|+..|++++... |.+ ..++..+|.++...|++++|+..+++++.. .|.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445678899999999999999999999999987 666 467889999999999999999999999865 345
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhcc--------------------HHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EYIYQTLALLEAKANR--------------------YEQ 132 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 132 (476)
...++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 56789999999999999999999999999886543 4589999999999999 999
Q ss_pred HHHHHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHH
Q 011845 133 ARNLFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 133 A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~ 200 (476)
|+.++++++... +....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 999999998863 3345688999999999999999999999999875543 3488999999999999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhH
Q 011845 201 GKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDT 268 (476)
Q Consensus 201 A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 268 (476)
|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999877655 6688999999999999999999999999875433 5688899999999999999
Q ss_pred HHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHH
Q 011845 269 ARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAA 306 (476)
Q Consensus 269 A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 306 (476)
|+.++++++++.+. ......++..+|.++...|+...+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 99999999987432 334456778889999999887443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=8.5e-27 Score=222.55 Aligned_cols=344 Identities=12% Similarity=0.025 Sum_probs=254.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Q 011845 15 VALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNI---GKARELFDASTVADKGHIAAWHGWAVLEL 91 (476)
Q Consensus 15 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 91 (476)
..+|..+.+.|++++|+..|+++.+. .++.+++.+|.++...|+. ++|+.+|++++.. ++.+++.+|.++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~---g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL---GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 56889999999999999999999765 3677888899999999988 9999999999865 7788999999777
Q ss_pred HhC-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH---HHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 92 RQG-----NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA---RNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 92 ~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..+ ++++|+.+|++++.. .++.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.+|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC
Confidence 666 889999999999885 4455889999999987765544 444444433 3457889999999998885
Q ss_pred HHHH----HHHHHHHHHcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCH
Q 011845 164 NLAA----RQLFERAVQASPKNRFAWHVWGIFEANMG---FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY----STA 232 (476)
Q Consensus 164 ~~~A----~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~ 232 (476)
++++ ..+++.+...+| .+++.+|.+|...| ++++|+..|+++....|.....++.+|.+|... +++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5444 444444444444 48899999999999 999999999999999999888889999998765 789
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhC-----CHH
Q 011845 233 NLARKLFRRASEIDPRHQPVWIAWGWM-E--WKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVG-----NLS 304 (476)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 304 (476)
++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+.. + ...++.+|.+|. .| +++
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~---~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q---PRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHH-cCCCCCCCHH
Confidence 99999999988 8888999999998 4 46889999999999998654 4 335678898888 66 999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhh-hhhcchhhhhhhh----cccchHHHHHH
Q 011845 305 AARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQR-TEVVDDASWVMGF----MDIIDPALDRI 375 (476)
Q Consensus 305 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----~g~~~~A~~~~ 375 (476)
+|+.+|+++. +.++.+++++|.+|.. ..++++|...|+++.+.. +.....+|.+|.. ..++.+|..+|
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999988 8889999999988877 348999999999888743 3455667777653 35889999999
Q ss_pred HHHhcccc
Q 011845 376 KQLLNLEK 383 (476)
Q Consensus 376 ~~al~~~p 383 (476)
+++.+..+
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99987644
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=1.5e-26 Score=219.29 Aligned_cols=271 Identities=13% Similarity=0.031 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHI----AAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEY 115 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~ 115 (476)
...+..+|..+...|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.. .|....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677778888888888888888887777765 46777888888888888888888877766 345566
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHhcc-----------------HHHHHHHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKC------NPKSCASWIAWSQMEMQQEN-----------------NLAARQLFE 172 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~ 172 (476)
++..+|.+|...|++++|+.+|++++.. .+....++..+|.++...|+ +++|+.+++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7777788888888888888888777776 34445567777777777777 677777766
Q ss_pred HHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 173 RAVQAS------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 173 ~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
+++... +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 666542 11233555555566666666666666655555443211 144444444444445444444444
Q ss_pred HHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 011845 241 RASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST---TESAARCLQAWGVLEQRVGNLSAARRLFR 311 (476)
Q Consensus 241 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 311 (476)
+++...+.. ..++..+|.++...|++++|+.++++++...+. ......++..+|.++...|++++|..+|+
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444443321 233444444444444444444444444433211 11112233334444444444444444444
Q ss_pred HHHhh
Q 011845 312 SSLNI 316 (476)
Q Consensus 312 ~al~~ 316 (476)
+++++
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=3.8e-27 Score=223.34 Aligned_cols=274 Identities=13% Similarity=0.010 Sum_probs=242.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcC
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENP----YIWQCWAVLENKLGNIGKARELFDASTVA------DKG 78 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~ 78 (476)
.....++.+|..+...|++++|+..|++++... |.++ .++..+|.++...|++++|+..|++++.. .|.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345667889999999999999999999999987 6665 58899999999999999999999999876 566
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhcc-----------------HHHHHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKF------CGGNEYIYQTLALLEAKANR-----------------YEQARN 135 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 135 (476)
...++..+|.++...|++++|+..+++++.. .+....++..+|.+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7789999999999999999999999999988 45566789999999999999 999999
Q ss_pred HHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHH
Q 011845 136 LFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR------FAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 136 ~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 203 (476)
++++++... +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998764 23345889999999999999999999999998876432 388999999999999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCChhHHHH
Q 011845 204 LLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPR------HQPVWIAWGWMEWKEGNLDTARE 271 (476)
Q Consensus 204 ~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 271 (476)
.+++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999887643 568899999999999999999999999987543 24588899999999999999999
Q ss_pred HHHHHHccCCCC
Q 011845 272 LYERALSIDSTT 283 (476)
Q Consensus 272 ~~~~a~~~~~~~ 283 (476)
+|++++++.+..
T Consensus 365 ~~~~al~~~~~~ 376 (411)
T 4a1s_A 365 YAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=2.5e-26 Score=211.07 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CcCcHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVA------DKGHIAA 82 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~ 82 (476)
.++..|..+...|++++|+..|+++++.. |.+ ..++..+|.++...|++++|+..+++++.. .|....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455555555555555555555555554 333 234455555555555555555555555443 2222344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE 162 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 162 (476)
+..+|.++...|++++|+..++++++..+.... .+....++..+|.++...|
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------------KVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------------chHHHHHHHHHHHHHHHcC
Confidence 445555555555555555555555443321100 0000114444444444444
Q ss_pred c--------------------HHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 011845 163 N--------------------NLAARQLFERAVQAS------PKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD- 215 (476)
Q Consensus 163 ~--------------------~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 215 (476)
+ +++|+..+++++... +....++..+|.++...|++++|+..+++++...+..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4 444444444444321 1122344455555555555555555555554433211
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--
Q 011845 216 -----PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDST-- 282 (476)
Q Consensus 216 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-- 282 (476)
..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1245555555555555555555555555543332 345556666666666666666666666554322
Q ss_pred -ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 011845 283 -TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS 318 (476)
Q Consensus 283 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 318 (476)
......++..+|.++...|++++|..+|++++.+.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 222233455566666666666666666666666544
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.95 E-value=8.6e-27 Score=208.12 Aligned_cols=256 Identities=14% Similarity=0.058 Sum_probs=134.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHh
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQAT---QGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQ 93 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 93 (476)
++..+...|++++|+..|+++++.. +|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3334444556666666666666542 1234455566666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 94 GNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++......++.. ...|++++|+..+++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 6666666666666665555555556666666666666666666666655555554433333322 334555555555555
Q ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845 174 AVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253 (476)
Q Consensus 174 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 253 (476)
++...|.+...+ .++.++...++.++|+..+.+++...|.. .|.++.++
T Consensus 170 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~~~ 218 (275)
T 1xnf_A 170 HFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSL------------------------------AEHLSETN 218 (275)
T ss_dssp HHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHH------------------------------HHHHHHHH
T ss_pred HHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccc------------------------------cccccHHH
Confidence 555555443332 23444444444444555554444433321 00123455
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLF 310 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 310 (476)
..+|.++...|++++|+..|++++..+|++.. ..+.++...|++++|++.|
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV------EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH------HHHHHHHHHHHHHhhHHHH
Confidence 55666666666666666666666665554422 1244555555555555554
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=5.3e-26 Score=198.98 Aligned_cols=215 Identities=16% Similarity=0.178 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666665655566666666666
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL 205 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 205 (476)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666666555555666666666666666666666666555555555555555555555555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845 206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME 260 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (476)
++++...|.++.++..+|.++...|++++|+.+|+++++..|+++.++..++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555554443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.95 E-value=5.6e-26 Score=202.82 Aligned_cols=247 Identities=15% Similarity=0.048 Sum_probs=157.2
Q ss_pred hCCHHHHHHHHHHhhccC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845 93 QGNIKKARQLLAKGLKFC----GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR 168 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 168 (476)
.|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555555442 2334455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++.....++.. ...|++++|+..+++++...|.
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCc
Confidence 555555555555555555566666666666666666666666666555444433332 4456777777777777777766
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845 249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE-SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327 (476)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 327 (476)
+...+. ++.++...++.++|+..+++++...|... .....+..+|.++...|++++|+.+|++++..+|++... .
T Consensus 177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 252 (275)
T 1xnf_A 177 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---H 252 (275)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---H
T ss_pred chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---H
Confidence 655443 66666777778888888888887765432 124568889999999999999999999999999987554 3
Q ss_pred HHHHHHcCChHHHHHHH
Q 011845 328 AQLEEDQGNSVRAEEIR 344 (476)
Q Consensus 328 ~~~~~~~g~~~~A~~~~ 344 (476)
+.++...|++++|++.+
T Consensus 253 ~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 253 RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhHHHH
Confidence 67888899999998876
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=1.9e-25 Score=202.65 Aligned_cols=251 Identities=13% Similarity=0.173 Sum_probs=203.6
Q ss_pred HHHHHHHHHHhhcCcCcHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHhhc-cCCCcHHHHHHHHHHHHHh
Q 011845 63 GKARELFDASTVADKGHIAAWHGWAVLELR-------QGNI-------KKARQLLAKGLK-FCGGNEYIYQTLALLEAKA 127 (476)
Q Consensus 63 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~ 127 (476)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|+++++ +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678888888888888888888888888764 4775 888999999988 6888888888899888888
Q ss_pred ccHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Q 011845 128 NRYEQARNLFRQATKCNPKSCA-SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN-MGFIDKGKKLL 205 (476)
Q Consensus 128 g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 205 (476)
|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..+|...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988888876 888888888888999999999999998888887777766666443 68999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 206 KIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI---DP-RHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| ....+|..++..+...|+++.|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999988999999999998899999999999999885 44 3677888888888889999999999999999888
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845 282 TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA 328 (476)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 328 (476)
++..... ++.+. . -.+.+.++|+++..+..+|
T Consensus 273 ~~~~~~~----~~~~~---~--------r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 273 EEYEGKE----TALLV---D--------RYKFMDLYPCSASELKALG 304 (308)
T ss_dssp TTTSSCH----HHHHH---T--------TTCBTTBCSSCHHHHHTTT
T ss_pred cccccch----HHHHH---H--------HHHhcccCCCCHHHHHhcC
Confidence 7643211 11111 1 1156677888888877665
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.95 E-value=3e-26 Score=210.59 Aligned_cols=253 Identities=13% Similarity=0.034 Sum_probs=161.0
Q ss_pred cccccCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 2 KCIDYWPED----GRPYVALGKVLSKQSKVAEARAIYAKGSQAT-----QGENPYIWQCWAVLENKLGNIGKARELFDAS 72 (476)
Q Consensus 2 ~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 72 (476)
++++.+|++ ..++..+|.++...|++++|+..+++++... ++....++..+|.++...|++++|+..++++
T Consensus 30 ~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 30 AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356677887 4688899999999999999999999998652 1344678899999999999999999999999
Q ss_pred hhcCcCc------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhhccC------CCcHHHHHHH
Q 011845 73 TVADKGH------IAAWHGWAVLELRQGN--------------------IKKARQLLAKGLKFC------GGNEYIYQTL 120 (476)
Q Consensus 73 ~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l 120 (476)
+...+.. ..++..+|.++...|+ +++|+..+++++... +....++..+
T Consensus 110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8765433 3477788888888888 777777777766542 2223455666
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCA------SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
|.++...|++++|+.++++++...+.... ++..+|.++...|++++|+..+++++...+....
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------- 258 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----------- 258 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-----------
Confidence 66666666666666666666655432221 4555555555555555555555555544322100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhH
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDT 268 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 268 (476)
.+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 259 -----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 259 -----------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 00003344555555555555555555555555443211 3355666666666677777
Q ss_pred HHHHHHHHHccCCC
Q 011845 269 ARELYERALSIDST 282 (476)
Q Consensus 269 A~~~~~~a~~~~~~ 282 (476)
|..++++++++.+.
T Consensus 322 A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 322 AMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 77666666665543
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=6.9e-26 Score=198.26 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=190.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
.+..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45778999999999999999999999999987 88999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 169 (476)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS 230 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 230 (476)
.+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..++.+....+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999988887665443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.94 E-value=8.4e-25 Score=192.55 Aligned_cols=210 Identities=12% Similarity=0.030 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845 126 KANRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 203 (476)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888887 6677777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 011845 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIA 255 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 255 (476)
.+++++...|.+..++..++.++...|++++|..+++++++..|+++..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888887766543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.94 E-value=2e-24 Score=186.46 Aligned_cols=212 Identities=11% Similarity=0.036 Sum_probs=124.9
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW 86 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 86 (476)
.|+++.+++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45555666666666666666666666666666555 55555666666666666666666666666666666666666666
Q ss_pred HHHHHHh-CCHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 87 AVLELRQ-GNIKKARQLLAKGLK--FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 87 a~~~~~~-~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 6666666 666666666666655 3444455555556666556666666666666555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 011845 164 NLAARQLFERAVQASP-KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 219 (476)
+++|+..+++++...| .+...+..++.++...|+.++|..+++.+....|+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 5555555555555555 5555555555555555555555555555555555555443
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.94 E-value=3.5e-25 Score=211.39 Aligned_cols=354 Identities=14% Similarity=0.058 Sum_probs=266.2
Q ss_pred CCCCchhHHHHHHHHHhcCCH---HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcCcC
Q 011845 7 WPEDGRPYVALGKVLSKQSKV---AEARAIYAKGSQATQGENPYIWQCWAVLENKLG-----NIGKARELFDASTVADKG 78 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~ 78 (476)
+++++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++...| ++++|+.+|++++.. .
T Consensus 31 ~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g 104 (452)
T 3e4b_A 31 ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--G 104 (452)
T ss_dssp HHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--T
T ss_pred HCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--C
Confidence 356889999999999999999 9999999999854 6788999999777766 889999999999884 4
Q ss_pred cHHHHHHHHHHHHHhCCHHHH---HHHHHHhhccCCCcHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhcCCCchhHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKA---RQLLAKGLKFCGGNEYIYQTLALLEAKANR----YEQARNLFRQATKCNPKSCASW 151 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~ 151 (476)
++.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.+|...+. .+.+..+++.+... ++.++
T Consensus 105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~ 179 (452)
T 3e4b_A 105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICY 179 (452)
T ss_dssp CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHH
Confidence 556899999999987765444 444444433 3567899999999999984 44555555555544 44599
Q ss_pred HHHHHHHHHhc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011845 152 IAWSQMEMQQE---NNLAARQLFERAVQASPKNRFAWHVWGIFEANM----GFIDKGKKLLKIGHAVNPRDPVLLQSLAL 224 (476)
Q Consensus 152 ~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 224 (476)
+.+|.+|...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 99999999999 999999999999999999999889999999766 79999999999998 889999999999
Q ss_pred H-H--HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q 011845 225 L-E--YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG-----NLDTARELYERALSIDSTTESAARCLQAWGVL 296 (476)
Q Consensus 225 ~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~ 296 (476)
+ + ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++. .++++|.+
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~---A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA---ADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH---HHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH---HHHHHHHH
Confidence 8 4 5789999999999999865 48899999999998 56 9999999999999 66644 47788988
Q ss_pred HHH----hCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhhhh-hcchhhhhhhh--c
Q 011845 297 EQR----VGNLSAARRLFRSSLNINSQSYITWMTWAQLEED----QGNSVRAEEIRNLYFQQRTE-VVDDASWVMGF--M 365 (476)
Q Consensus 297 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~--~ 365 (476)
|.. ..++++|+.+|+++.+ +.++.+.++++.+|.. ..++.+|...|+.+...... ....++.+... .
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTP 405 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCH
Confidence 887 3499999999999986 4667889999999985 45899999999999875442 22333333332 3
Q ss_pred ccchHHHHHHHHHhccccCC
Q 011845 366 DIIDPALDRIKQLLNLEKSS 385 (476)
Q Consensus 366 g~~~~A~~~~~~al~~~p~~ 385 (476)
++..+|....++..+..+..
T Consensus 406 ~~~~~a~~~~~~~~~~~~~~ 425 (452)
T 3e4b_A 406 AQRAEGQRLVQQELAARGTL 425 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 47788888888888876663
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.94 E-value=4.7e-24 Score=190.17 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=118.4
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK----LGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
|+++.+++.+|.++...|++++|+.+|+++++ +.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 44555555555555555555555555555544 2344455555555555 555555555555555442 44455
Q ss_pred HHHHHHHHH----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 84 HGWAVLELR----QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 84 ~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
+.+|.++.. .+++++|+..|+++++. +++.+ +..+|.+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a----------------------------------~~~lg~~~~ 121 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEG----------------------------------CASLGGIYH 121 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH----------------------------------HHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccH----------------------------------HHHHHHHHH
Confidence 555555555 55555555555555443 24444 444444444
Q ss_pred H----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---
Q 011845 160 Q----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK--- 228 (476)
Q Consensus 160 ~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 228 (476)
. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+..|+++++. .++.++..+|.++..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCS
T ss_pred cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 4 445555555555554433 33444555555554 55555555555555544 234555555555555
Q ss_pred -cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCC
Q 011845 229 -YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 229 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~ 283 (476)
.+++++|+.+|+++++..| +.++..+|.++.. .+++++|+.+|+++++..|++
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555543 4555556666655 566666666666666555543
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.94 E-value=8.7e-24 Score=188.44 Aligned_cols=234 Identities=13% Similarity=0.114 Sum_probs=188.7
Q ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCchhHH
Q 011845 76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNPKSCASW 151 (476)
Q Consensus 76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 151 (476)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466777888888888888888888888888877 6677788888888888 888888888888888774 67788
Q ss_pred HHHHHHHHH----hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011845 152 IAWSQMEMQ----QENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLA 223 (476)
Q Consensus 152 ~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 223 (476)
..+|.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 888888888 888888888888888763 77888888888888 888888998888888865 577888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHccCCCChhHHHHHHHHHH
Q 011845 224 LLEYK----YSTANLARKLFRRASEIDPRHQPVWIAWGWMEWK----EGNLDTARELYERALSIDSTTESAARCLQAWGV 295 (476)
Q Consensus 224 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~ 295 (476)
.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| ...+..+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~l~~ 226 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----GGGCFNLGA 226 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----HHHHHHHHH
Confidence 88888 88888888888888876 357888888888888 8888888888888888755 234677788
Q ss_pred HHHH----hCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845 296 LEQR----VGNLSAARRLFRSSLNINSQSYITW 324 (476)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 324 (476)
++.. .+++++|+.+|+++++..|++...+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888 8888888888888888887665443
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.94 E-value=1.7e-24 Score=190.59 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=137.0
Q ss_pred CcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 76 DKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 76 ~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
+|.. +.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 3443 566666666666677777777777766666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845 155 SQMEMQQENNLAARQLFERAVQ--ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA 232 (476)
Q Consensus 155 a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 232 (476)
|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666666 55566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
++|+..++++++..|.+...+..++.++...|++++|..+++++++..|+++.
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 66666666666666666666666666666666666666666666666665543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.94 E-value=4.1e-24 Score=184.46 Aligned_cols=210 Identities=13% Similarity=0.027 Sum_probs=109.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHh-ccHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845 123 LEAKA-NRYEQARNLFRQATK--CNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 123 ~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 55555 555555555555555 333334445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 011845 200 KGKKLLKIGHAVNP-RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPV 252 (476)
Q Consensus 200 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 252 (476)
+|+..+++++...| .++..+..++.++...|+.+.|..+++.+.+..|+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 55555555555554 444444444444445555555555554444444444443
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=4.9e-24 Score=193.37 Aligned_cols=266 Identities=11% Similarity=0.093 Sum_probs=228.2
Q ss_pred CCCchhHHHHHHHHHhc----CCH----HHHHHHHHHhhccCCCCChHHHHHHHHHHHH-------cCCH-------HHH
Q 011845 8 PEDGRPYVALGKVLSKQ----SKV----AEARAIYAKGSQATQGENPYIWQCWAVLENK-------LGNI-------GKA 65 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A 65 (476)
|.....|......-... ++. ++|+..|++++... |.++.+|+.+|..+.. .|++ ++|
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 34455666666654443 243 78999999999998 9999999999998874 5885 999
Q ss_pred HHHHHHHhh-cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 66 RELFDASTV-ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 66 ~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
+..|++++. .+|++..+|..+|.++...|++++|+.+|+++++..|.++. +|..+|.++...|++++|+..|+++++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 79999999999999999999999999999999999999887 9999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-CCHHH
Q 011845 144 NPKSCASWIAWSQMEMQ-QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAV---NP-RDPVL 218 (476)
Q Consensus 144 ~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~-~~~~~ 218 (476)
.|....+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| ....+
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 99998888877776544 699999999999999999999999999999999999999999999999996 44 37889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 219 LQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 219 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
|..++.++...|+++.|..+++++++..|++..... ++.+. .+ .+.+.+.|+++..
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~~---~r--------~~~l~~~P~~~~~ 299 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALLV---DR--------YKFMDLYPCSASE 299 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHHH---TT--------TCBTTBCSSCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHHH---HH--------HHhcccCCCCHHH
Confidence 999999999999999999999999999998653321 12111 11 1556678888654
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1.8e-24 Score=180.65 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE 192 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 192 (476)
++.+|+.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAREL 272 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 272 (476)
...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHccCCC
Q 011845 273 YERALSIDST 282 (476)
Q Consensus 273 ~~~a~~~~~~ 282 (476)
|+++++++|+
T Consensus 164 ~~~al~~~p~ 173 (184)
T 3vtx_A 164 FKKALEKEEK 173 (184)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHhCCcc
Confidence 5555555443
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1.7e-24 Score=180.85 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 011845 125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKL 204 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 204 (476)
...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCC
Q 011845 205 LKIGHAVNPR 214 (476)
Q Consensus 205 ~~~~~~~~~~ 214 (476)
|+++++.+|+
T Consensus 164 ~~~al~~~p~ 173 (184)
T 3vtx_A 164 FKKALEKEEK 173 (184)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHhCCcc
Confidence 5555555443
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=8.8e-25 Score=209.92 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 95 NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRY-EQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
.+++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356666666666666677777777777777777777 7777777777777777777777777777777777777777777
Q ss_pred HHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 011845 174 AVQASPKNRFAWHVWGIFEANM---------GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY--------STANLAR 236 (476)
Q Consensus 174 a~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~ 236 (476)
+++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 7777776 46777777777777 7777777777777777777777777777777777 7777777
Q ss_pred HHHHHHhccCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 011845 237 KLFRRASEIDP---RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSS 313 (476)
Q Consensus 237 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 313 (476)
..|+++++.+| .++.+|+.+|.++...|++++|+..|+++++++|++.. .+..++.++...|++++|+..+.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE---PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777 77777777777777777777777777777777777743 3566677777777777777777665
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=1.5e-24 Score=208.34 Aligned_cols=217 Identities=15% Similarity=0.025 Sum_probs=206.5
Q ss_pred cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845 59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI-KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLF 137 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 137 (476)
.+.+++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.+|...|++++|+.+|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34578899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHh---------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--------CCHHH
Q 011845 138 RQATKCNPKSCASWIAWSQMEMQQ---------ENNLAARQLFERAVQASPKNRFAWHVWGIFEANM--------GFIDK 200 (476)
Q Consensus 138 ~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 200 (476)
+++++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... |++++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 999999998 69999999999999 9999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 011845 201 GKKLLKIGHAVNP---RDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERA 276 (476)
Q Consensus 201 A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 276 (476)
|+..|++++..+| .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999887654
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.93 E-value=4.4e-22 Score=195.87 Aligned_cols=380 Identities=12% Similarity=0.100 Sum_probs=305.2
Q ss_pred ccccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCc--
Q 011845 3 CIDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN---IGKARELFDASTVADK-- 77 (476)
Q Consensus 3 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p-- 77 (476)
.|..+|.+...|..++......+.++.+..+|++++... |.....|..++....+.|+ ++.+..+|++++...|
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 567899999999999999999999999999999999998 9999999999999999999 9999999999999884
Q ss_pred CcHHHHHHHHHHHHHhCCH--------HHHHHHHHHhhcc----CCCcHHHHHHHHHHHH---------HhccHHHHHHH
Q 011845 78 GHIAAWHGWAVLELRQGNI--------KKARQLLAKGLKF----CGGNEYIYQTLALLEA---------KANRYEQARNL 136 (476)
Q Consensus 78 ~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~ 136 (476)
.++..|..........++. +....+|++++.. ++.+..+|........ ..++.+.+..+
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i 216 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL 216 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence 6788999888777666653 3344788887753 5667778877766543 34567788888
Q ss_pred HHHHHhcCCCc-h-hHH---------------------------------------------------------------
Q 011845 137 FRQATKCNPKS-C-ASW--------------------------------------------------------------- 151 (476)
Q Consensus 137 ~~~~~~~~p~~-~-~~~--------------------------------------------------------------- 151 (476)
|++++.. |.. . ..|
T Consensus 217 y~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~ 295 (679)
T 4e6h_A 217 YKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPN 295 (679)
T ss_dssp HHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTT
T ss_pred HHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCc
Confidence 8888864 321 1 111
Q ss_pred ----------HHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCC
Q 011845 152 ----------IAWSQMEMQQE-------NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK-KLLKIGHAVNP 213 (476)
Q Consensus 152 ----------~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~ 213 (476)
..+.......+ ........|++++...|.++.+|+.++..+...|+.++|. .+|++++..+|
T Consensus 296 ~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P 375 (679)
T 4e6h_A 296 EYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP 375 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 11111100000 1223457899999999999999999999999999999997 99999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----------CC-----------CHHHHHHHHHHHHHcCChhHHHH
Q 011845 214 RDPVLLQSLALLEYKYSTANLARKLFRRASEID-----------PR-----------HQPVWIAWGWMEWKEGNLDTARE 271 (476)
Q Consensus 214 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------~~-----------~~~~~~~l~~~~~~~g~~~~A~~ 271 (476)
.+..+|..++.+....|++++|..+|++++... |. ...+|...+.+..+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999998752 43 34578999999999999999999
Q ss_pred HHHHHHcc-CCCChhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 272 LYERALSI-DSTTESAARCLQAWGVLEQRVGN-LSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 272 ~~~~a~~~-~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
+|.++++. .+.. ..++...+.+....|+ .+.|..+|+.+++..|+++..|..++.++...|+.+.|..+|++++.
T Consensus 456 vf~~A~~~~~~~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 456 IFGKCRRLKKLVT---PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHTGGGSC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999987 3333 2345566777767654 99999999999999999999999999999999999999999999998
Q ss_pred hhh------hhcchhhhhhhhcccchHHHHHHHHHhccccCCCC
Q 011845 350 QRT------EVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYK 387 (476)
Q Consensus 350 ~~~------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 387 (476)
..+ .++......-...|+.+.+...++++.+..|+++.
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 665 23344444555779999999999999999998654
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.93 E-value=5.5e-24 Score=199.54 Aligned_cols=300 Identities=9% Similarity=0.004 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CChHHHHHH----HHHHHHcCCHHHHH-----------HHHHHHhh
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQG--ENPYIWQCW----AVLENKLGNIGKAR-----------ELFDASTV 74 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l----a~~~~~~g~~~~A~-----------~~~~~~~~ 74 (476)
...+.-...++..+++++|..+++.+.+..+. .+..+.... .......+++..+. ..++++-.
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~ 92 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK 92 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence 33444455566778888888887777543211 233333211 12222333444444 44444322
Q ss_pred cCcCcHH------HHHHHHHHHHHhCCHHHHHHHHHHhhccC---C---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 011845 75 ADKGHIA------AWHGWAVLELRQGNIKKARQLLAKGLKFC---G---GNEYIYQTLALLEAKANRYEQARNLFRQATK 142 (476)
Q Consensus 75 ~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 142 (476)
.|.... .++.+|.++...|++++|+..+++++... + ....++..+|.+|...|++++|+.++++++.
T Consensus 93 -~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 93 -KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 23346777777777777777777776651 2 2345667777777777777777777777766
Q ss_pred cCCCc-------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 143 CNPKS-------CASWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 143 ~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
..+.. ..++..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++|+.++++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 53322 2356666666666666666666666666553321 2345555666666666666666666655
Q ss_pred h-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCCHHHHHHHHHHHHHcCC---hhHHHHHHHH
Q 011845 210 A-----VN-PRDPVLLQSLALLEYKYSTANLARKLFRRASEID-----PRHQPVWIAWGWMEWKEGN---LDTARELYER 275 (476)
Q Consensus 210 ~-----~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 275 (476)
. .+ |..+.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +.+|+.++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5 23 4444555555555555555555555555555442 1111223345555555555 4444444444
Q ss_pred HHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 276 ALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 276 a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
. +..+....++..+|.+|...|++++|..+|++++.+
T Consensus 332 ~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 332 K----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp T----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 222222334444555555555555555555555443
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=1.1e-22 Score=176.16 Aligned_cols=209 Identities=10% Similarity=0.058 Sum_probs=141.0
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNP-KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIF 191 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 191 (476)
++..++.+|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 445555666666666666666666666666655 5555555566666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHH
Q 011845 192 EANMGFIDKGKKLLKIGHAVNPRDP-------VLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWIAWGWMEWK 262 (476)
Q Consensus 192 ~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 262 (476)
+...|++++|+..++++++..|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 6666666666666666666666665 45777778888888888888888888888888 77888888888865
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
.| ...++++..+.+..... + .+......+.+++|+.+|+++++++|++..++..++.+.
T Consensus 166 ~~-----~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 166 NG-----ADVLRKATPLASSNKEK---Y--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HH-----HHHHHHHGGGTTTCHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccCCHHH---H--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 54 34556666666555322 1 244455667788899999999999999888887777664
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=1.2e-23 Score=197.27 Aligned_cols=301 Identities=11% Similarity=-0.022 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc---CcHHHH--HHH--HHHHHHhCCHHHHH-----------HHHHHhhc
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADK---GHIAAW--HGW--AVLELRQGNIKKAR-----------QLLAKGLK 108 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~--~~l--a~~~~~~~~~~~A~-----------~~~~~~~~ 108 (476)
.....-...+...+++++|..+++.+.+.-+ .+...+ +.+ .......+++..+. ..++++-.
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~ 92 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK 92 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence 3344445566778889999888888754321 233332 221 12222333333333 44444322
Q ss_pred cCCCcHH------HHHHHHHHHHHhccHHHHHHHHHHHHhcC---CC---chhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 109 FCGGNEY------IYQTLALLEAKANRYEQARNLFRQATKCN---PK---SCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 109 ~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
.|.... .++..|.++...|++++|+..|++++... ++ ...++..+|.++...|++++|+..++++++
T Consensus 93 -~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 93 -KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 33447778888888888888888887762 22 345777788888888888888888888777
Q ss_pred cCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 011845 177 ASPK-------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRAS 243 (476)
Q Consensus 177 ~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 243 (476)
..+. ...++..+|.++...|++++|+..+++++...+.. ..++.++|.++...|++++|+.+|++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6332 23466777777777777777777777777654322 2366677777777777777777777777
Q ss_pred c-----cC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC--ChhHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Q 011845 244 E-----ID-PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDST--TESAARCLQAWGVLEQRVGN---LSAARRLFRS 312 (476)
Q Consensus 244 ~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 312 (476)
+ .+ |..+.++..+|.++...|++++|+.++++++.+.+. ++.....+..+|.++...|+ +++|+.++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 6 34 555666777777777777777777777777665322 22222224456777777776 6666666665
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 313 SLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 313 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
. ...|....++..+|.++...|++++|...+++++.
T Consensus 332 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 332 K-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 22333445566666666666666666666555554
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=4.4e-23 Score=178.63 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=191.2
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW 86 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 86 (476)
.|.++..++.+|.+++..|++++|+..|++++...++.+..+++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 35677999999999999999999999999999998438889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcH-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--chhHHHHHHHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNE-------YIYQTLALLEAKANRYEQARNLFRQATKCNPK--SCASWIAWSQM 157 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~ 157 (476)
|.++...|++++|+..++++++..|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999998 66999999999999999999999999999999 99999999999
Q ss_pred HHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845 158 EMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227 (476)
Q Consensus 158 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 227 (476)
+...|+ ..++++..+.+.+...+ .+......+.+++|+..++++++.+|+++.+...++.+..
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 987665 44566667766664443 3444556778999999999999999999999988887754
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1.8e-21 Score=197.36 Aligned_cols=312 Identities=15% Similarity=0.100 Sum_probs=252.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNI 96 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 96 (476)
.|.++...|.+++|..+|+++- .... .+...+...|++++|+++++++ +.+.+|+.+|.++...|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 4999999999999999999972 1111 1233345889999999999876 5688999999999999999
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++ +.+-..+|.+|.+.+++++ ++.|.
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI---- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI---- 1190 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----
Confidence 9999999886 78899999999999999999999999999988743 3334458999999998885 44442
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 011845 177 ASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW 256 (476)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 256 (476)
..+ +...+..+|..+...|++++|..+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...
T Consensus 1191 ~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev 1256 (1630)
T 1xi4_A 1191 NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 1256 (1630)
T ss_pred hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHH
Confidence 233 3456778999999999999999999985 47889999999999999999999988 456899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--
Q 011845 257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ-- 334 (476)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 334 (476)
+.++...|+|..|..+... +..+|+. +..++..|...|.+++|+.++++++.++|.+...+..++.++.+.
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-Iiv~~de------Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-IVVHADE------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-hhcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 9999999999999988774 4444443 557789999999999999999999999999999998888888764
Q ss_pred CChHHHHHHHHHHHhh--------hhhhcchhhhhhhhcccchHHHH
Q 011845 335 GNSVRAEEIRNLYFQQ--------RTEVVDDASWVMGFMDIIDPALD 373 (476)
Q Consensus 335 g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~~ 373 (476)
++..++.+.|...... ....|......|.+.|+++.|+.
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3555666666655552 22456777788888999998883
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=5.4e-21 Score=193.93 Aligned_cols=330 Identities=13% Similarity=0.049 Sum_probs=228.7
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQG---ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
++---...+.|...|.+.+|++.|++++... . ++...-..++.+..+. +..+..++..+.-..+ .-.+|
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence 3344556778889999999999999998432 3 3444444455544444 3344444444332111 22377
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA 167 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 167 (476)
.++...|.+++|..+|+++- ... ..+..++...|++++|.++++++ +.+.+|..+|.++...|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~~---~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VNT---SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CHH---HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888863 111 11233344778888888887764 5577888888888888888888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845 168 RQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP 247 (476)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 247 (476)
+..|.++ +++..+...+.++.+.|++++|+++|..+.+..++ +.+-..+|.+|.+.+++++ ++.|. ..+
T Consensus 1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP 1193 (1630)
T ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC
Confidence 8888775 67778888888888888888888888888777643 3333457788888887774 33332 122
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 011845 248 RHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTW 327 (476)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 327 (476)
+...+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|++.++++ .+..+|...
T Consensus 1194 -n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev 1256 (1630)
T 1xi4_A 1194 -NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV 1256 (1630)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHH
Confidence 3456667888888888888888888875 13667788888888888888888887 456788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhccccCCCCCC
Q 011845 328 AQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLNLEKSSYKEP 389 (476)
Q Consensus 328 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 389 (476)
+..+...|++..|..+... +...++.....+..|...|.+++|+.++++++.++|.+....
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 8888888888888776553 444566666777778888888888888888888776654443
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=193.18 Aligned_cols=247 Identities=15% Similarity=0.160 Sum_probs=155.7
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQA-------TQGENPYIWQCWAVLENKLGNIGKARELFDASTVA---- 75 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 75 (476)
+|....++..+|.++...|++++|+.+|++++.. ..+....++..+|.++...|++++|+..|++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888888888888763 23555677788888888888888888888888765
Q ss_pred ----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 76 ----DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 76 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
.|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888777653 344556777777777777777777777777776
Q ss_pred --------CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 144 --------NPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------RFAWHVWGIFEANMGFIDKGKKLLK 206 (476)
Q Consensus 144 --------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~ 206 (476)
.|....++..+|.++...|++++|+..++++++..+.. ...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------- 243 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------- 243 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence 45555667777777777777777777777776543221 111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 207 IGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
...+...+..+...+.+.+|...+..+....|..+.++..+|.++...|++++|+.+|++++++.|
T Consensus 244 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 ---------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 112222333334444555555566666655666666666666666666666666666666665544
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=4.8e-23 Score=205.18 Aligned_cols=169 Identities=17% Similarity=0.128 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
|+++.++.++|.+|..+|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|++..+++++|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (476)
++...|++++|++.|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcc
Q 011845 271 ELYERALSI 279 (476)
Q Consensus 271 ~~~~~a~~~ 279 (476)
+.+++++++
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=8.4e-23 Score=203.44 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=84.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
|+++.++..+|.++..+|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
++..+|++++|++.|+++++++|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555555555554555555555555555555555555555555554444455555555555555444
Q ss_pred HHHHHHHhc
Q 011845 203 KLLKIGHAV 211 (476)
Q Consensus 203 ~~~~~~~~~ 211 (476)
+.+++++++
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=191.16 Aligned_cols=249 Identities=16% Similarity=0.125 Sum_probs=172.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC----
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVA--------DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC---- 110 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 110 (476)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 556778899999999999999999999999873 56667888899999999999999999999888762
Q ss_pred ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc-
Q 011845 111 ----GGNEYIYQTLALLEAKANRYEQARNLFRQATKCN--------PKSCASWIAWSQMEMQQENNLAARQLFERAVQA- 177 (476)
Q Consensus 111 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 177 (476)
|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.++++++..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888888887763 444556777777777777777777777777776
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--
Q 011845 178 -------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR-- 248 (476)
Q Consensus 178 -------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 248 (476)
.|....++..+|.++...|++++|+..+++++...+... .+ ...+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~--------------------~~~~~~~ 238 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE-----FG--------------------SVDDENK 238 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-----HC--------------------------C
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CC--------------------CCCcchH
Confidence 444556666777777777777777777776665432100 00 00111
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 249 ----HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 249 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
....+...+..+...+.+.+|...++++....|.. ..++..+|.++...|++++|..+|++++++.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV---TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12334445556667788889999999988766555 556888999999999999999999999998775
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=5.2e-22 Score=175.63 Aligned_cols=211 Identities=13% Similarity=0.010 Sum_probs=100.1
Q ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hh
Q 011845 76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CA 149 (476)
Q Consensus 76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~ 149 (476)
.|.++..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34445555555555555555555555555555555544 4455555555555555555555555555554432 33
Q ss_pred HHHHHHHHHHH--------hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 011845 150 SWIAWSQMEMQ--------QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQS 221 (476)
Q Consensus 150 ~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 221 (476)
+++.+|.++.. .|++++|+..|++++...|+++.+...+..+....+. ....++.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 45555555555 5555555555555555555543332222111111000 0112344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHccCCCChhHHH
Q 011845 222 LALLEYKYSTANLARKLFRRASEIDPR---HQPVWIAWGWMEWKE----------GNLDTARELYERALSIDSTTESAAR 288 (476)
Q Consensus 222 la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~ 288 (476)
+|.++...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+++....
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 455555555555555555555554444 233445555555443 4455555555555555555544444
Q ss_pred HHHHHHHHHHHhCCH
Q 011845 289 CLQAWGVLEQRVGNL 303 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~ 303 (476)
....++.++...+++
T Consensus 234 a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 234 AEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444443
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=9.5e-22 Score=173.94 Aligned_cols=217 Identities=11% Similarity=-0.010 Sum_probs=176.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---
Q 011845 108 KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS---CASWIAWSQMEMQQENNLAARQLFERAVQASPKN--- 181 (476)
Q Consensus 108 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--- 181 (476)
...|.++..++.+|..+...|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788888999999999999999999999999988888 7888899999999999999999999999887743
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 011845 182 RFAWHVWGIFEAN--------MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVW 253 (476)
Q Consensus 182 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 253 (476)
+.+++.+|.++.. .|++++|+..|++++...|+++.+...+..+....+. ....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHH
Confidence 6778888888888 8888888888888888888876655444333222111 12347
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhCCCcH--
Q 011845 254 IAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRV----------GNLSAARRLFRSSLNINSQSY-- 321 (476)
Q Consensus 254 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~-- 321 (476)
+.+|.++...|++++|+..|+++++..|+++.....+..+|.++... |++++|+..|+++++..|+++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 89999999999999999999999999999887777899999999977 999999999999999999986
Q ss_pred -HHHHHHHHHHHHcCChHHHH
Q 011845 322 -ITWMTWAQLEEDQGNSVRAE 341 (476)
Q Consensus 322 -~~~~~l~~~~~~~g~~~~A~ 341 (476)
.+...++.++...++++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 45666777777766665543
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=9.4e-21 Score=176.90 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------H
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPY----IWQCWAVLENKLGNIGKARELFDASTVADKGHI------A 81 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~ 81 (476)
.++..+|.++...|++++|+..+++++...++.+.. ++..+|.++...|++++|+..+++++...|... .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455666777777777777777777777665333322 455666777777777777777777765443221 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----h
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-----C 148 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~ 148 (476)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+.. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 34566666667777777777776666543 2223455556666666666666666666666655431 2
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC--cHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HH
Q 011845 149 ASWIAWSQMEMQQENNLAARQLFERAVQASPK--NRFAWH-----VWGIFEANMGFIDKGKKLLKIGHAVNPRD----PV 217 (476)
Q Consensus 149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 217 (476)
.++..+|.++...|++++|...+++++...+. .+..+. ..+.++...|++++|...+++++...+.. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 34555666666666666666666665544211 111111 12233445555555555555555443321 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPR------HQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
.+..++.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2334444444444444444444444433211 012333344444444444444444444443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=4.5e-21 Score=179.33 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------ch
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCG------GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK-------SC 148 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~ 148 (476)
.++..|..+...|++++|+..|++++...+ ....++..+|.+|...|++++|+.++++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 345567777777777777777777766532 22446666777777777777777777777665332 12
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHcCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHH
Q 011845 149 ASWIAWSQMEMQQENNLAARQLFERAVQASP---K---NRFAWHVWGIFEANMGFIDKGKKLLKIGHA-----VNPRDPV 217 (476)
Q Consensus 149 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 217 (476)
.++..+|.++...|++++|+..|++++...+ + ...++..+|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 3455666666666666666666666665421 1 123455555555555555555555555555 4444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHccCCCChhHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDP-----RHQPVWIAWGWMEWKEGN---LDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
++..+|.++...|++++|+.+++++++..+ .....+..++.++...|+ +.+|+.++++. ...+....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHH
Confidence 555555555555555555555555554422 112233344444444444 44444444431 112222333
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
+..+|.+|...|++++|..+|+++++
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=6.3e-21 Score=169.36 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHHHHHHHH----HHh---CCHHH
Q 011845 28 AEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWHGWAVLE----LRQ---GNIKK 98 (476)
Q Consensus 28 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~---~~~~~ 98 (476)
++|+..+.+++..+ |.+..+|+..+.++...| ++++++.++..++..+|++..+|...+.++ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555555 555555555555555555 555555555555555555555555555555 333 45555
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH--HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc------HHHHHHH
Q 011845 99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE--QARNLFRQATKCNPKSCASWIAWSQMEMQQEN------NLAARQL 170 (476)
Q Consensus 99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~------~~~A~~~ 170 (476)
++.++.++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|...+.++...+. +++++++
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 555555555555555555555555555555555 55555555555555555555555555555444 5555555
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-c
Q 011845 171 FERAVQASPKNRFAWHVWGIFEANMGFIDK-GKKLLKIGHAVN---PRDPVLLQSLALLEYKYSTANLARKLFRRASE-I 245 (476)
Q Consensus 171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~ 245 (476)
+.+++..+|.+..+|+.++.++...|+..+ ...++.+++... |.++.++..++.++.+.|+.++|+++|+.+.+ .
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 555555555555555555555555544322 233444444333 44445555555555555555555555555443 4
Q ss_pred CCCCHHHHHHH
Q 011845 246 DPRHQPVWIAW 256 (476)
Q Consensus 246 ~~~~~~~~~~l 256 (476)
+|-....|...
T Consensus 289 Dpir~~yW~~~ 299 (306)
T 3dra_A 289 NPIRSNFWDYQ 299 (306)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 55444444443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=2.6e-20 Score=173.86 Aligned_cols=270 Identities=11% Similarity=0.008 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHI-----AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EY 115 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~ 115 (476)
.++...|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|.. ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4455566666777777777777777766555332 245566666666777777777777666654322 12
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-----cH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCN--------PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPK-----NR 182 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~ 182 (476)
++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+. ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 34556666666666666666666666543 222334555666666666666666666666655443 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHhccCCCC----HH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNP--RD-PVLLQ----SLALLEYKYSTANLARKLFRRASEIDPRH----QP 251 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~----~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 251 (476)
.++..++.++...|++++|...+++++...+ .. ..... ..+.++...|++++|...+++++...|.. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3445555555555555555555555554321 11 11110 12233445555555555555554443321 12
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 252 VWIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
.+..++.++...|++++|...+++++...+... ....++..+|.++...|++++|...+++++..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334444445555555555555554444322211 11223334444444444444444444444443
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.89 E-value=2.2e-20 Score=165.91 Aligned_cols=230 Identities=10% Similarity=0.077 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCCCchhHHHHHHHHH----HHh---ccHHHH
Q 011845 97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKAN--RYEQARNLFRQATKCNPKSCASWIAWSQME----MQQ---ENNLAA 167 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~----~~~---~~~~~A 167 (476)
++|+.++.+++.++|++..+|...+.++...| ++++++.+++.++..+|.+..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 35555555555555555555555555555555 666666666666666666666666666655 444 566666
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 011845 168 RQLFERAVQASPKNRFAWHVWGIFEANMGFID--KGKKLLKIGHAVNPRDPVLLQSLALLEYKYST------ANLARKLF 239 (476)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~ 239 (476)
+.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|...+.++...+. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 67777777777776667766666666666666 67777777777777777777777776666665 77788888
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHccC---CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 240 RRASEIDPRHQPVWIAWGWMEWKEGNLDT-ARELYERALSID---STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
.+++..+|++..+|+.++.++...|+... ...++.+++... |.++ .++..++.++.+.|+.++|+++|+.+.+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS---FALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888888888888888888877777544 445666666654 4443 3456668888888888888888888875
Q ss_pred -hCCCcHHHHHHHHH
Q 011845 316 -INSQSYITWMTWAQ 329 (476)
Q Consensus 316 -~~p~~~~~~~~l~~ 329 (476)
.+|-....|...+.
T Consensus 287 ~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 287 KYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTCGGGHHHHHHHHH
T ss_pred ccChHHHHHHHHHHh
Confidence 68887777766554
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=7.9e-23 Score=186.85 Aligned_cols=286 Identities=13% Similarity=0.110 Sum_probs=138.4
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHH
Q 011845 20 VLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKA 99 (476)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 99 (476)
.....|+.++|.+++++. +++.+|..+|.++.+.|++++|++.|.++ .++..+...+..+...|++++|
T Consensus 12 ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 334678889999999887 23468999999999999999999999764 4566888888888889999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845 100 RQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 100 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
+.+++.+.+..+ ++.+...++.+|.++|++.++.++++. | +..+|..+|..+...|.+++|..+|.++
T Consensus 81 i~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 81 VKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 998888887543 367788889999999999998877752 4 3458999999999999999999999876
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 011845 180 KNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWM 259 (476)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 259 (476)
..|..++.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+... +...| +-...++.+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~ 216 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINY 216 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHH
Confidence 36788999999999999999999988 4788899999999999999999776664 22444 445568888
Q ss_pred HHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHH
Q 011845 260 EWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQ--RVGNLSAARRLFRSSLNINS-----QSYITWMTWAQLEE 332 (476)
Q Consensus 260 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~ 332 (476)
|.+.|++++|+.++++++.+++.+.. ++..+|.+|. +.++..+.++.|...+.+.| .+...|..+..+|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le~ah~~---~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLERAHMG---MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTSTTCCHH---HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998877744 4566666665 45677788888887777777 77788999999999
Q ss_pred HcCChHHHHHH
Q 011845 333 DQGNSVRAEEI 343 (476)
Q Consensus 333 ~~g~~~~A~~~ 343 (476)
+.++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 99999988765
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.5e-21 Score=195.74 Aligned_cols=188 Identities=9% Similarity=-0.095 Sum_probs=173.0
Q ss_pred hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhh--------ccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845 74 VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGL--------KFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 74 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
..+|.++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45677777777666 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011845 146 KSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL 225 (476)
Q Consensus 146 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 225 (476)
++..+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 011845 226 EYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN 265 (476)
Q Consensus 226 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (476)
+...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999877665
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=1.8e-21 Score=174.88 Aligned_cols=182 Identities=11% Similarity=0.007 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------H
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPKN------RFAWHVWGIFEANM-GFIDKGKKLLKIGHAVNPRD------P 216 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~ 216 (476)
++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|... |++++|+.+|++++.+.|.+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44444444444445555555554444443321 23555666666664 66666666666666665533 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHH--
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-------VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAA-- 287 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 287 (476)
.++..+|.++...|++++|+.+|++++...|++.. .+..+|.++...|++++|+..|+++++++|+.....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45667777777777777777777777777665432 567777788888888888888888888777654431
Q ss_pred HHHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 011845 288 RCLQAWGVLEQ--RVGNLSAARRLFRSSLNINSQSYITWMTWAQLE 331 (476)
Q Consensus 288 ~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 331 (476)
..+..++..+. ..+++++|+..|++++.++|....++..+-...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 23344455443 456688888888888887777766655554443
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.3e-21 Score=196.04 Aligned_cols=185 Identities=12% Similarity=-0.042 Sum_probs=148.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--------hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDAST--------VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE 114 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (476)
|.++..++..+ ...|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 66666666655 66788888888888888 77788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.++..
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888 888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 011845 195 MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST 231 (476)
Q Consensus 195 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 231 (476)
.|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 547 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888888888888888888888888766554
No 83
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=3.2e-22 Score=182.89 Aligned_cols=291 Identities=11% Similarity=0.041 Sum_probs=161.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 88 (476)
+++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.+++.+.+..+ ++.+...++.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~ 102 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHH
Confidence 34579999999999999999999999764 4666889999999999999999999998887533 4677888999
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR 168 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 168 (476)
+|.+.|++.++.++++. | +..+|..+|..+...|.|++|..+|.++ ..|..+|.++.+.|++++|+
T Consensus 103 ~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 103 ALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence 99999999999887752 3 4469999999999999999999999976 47899999999999999999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 011845 169 QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR 248 (476)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 248 (476)
+.++++ .++.+|...+.++...|+++.|..+... +.. ++.-...++.+|.+.|++++|+.++++++..++.
T Consensus 169 ea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 169 DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 999998 4789999999999999999999877765 224 4455667889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH--cCChhHHHHHHHHHHccCC-----CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Q 011845 249 HQPVWIAWGWMEWK--EGNLDTARELYERALSIDS-----TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI----- 316 (476)
Q Consensus 249 ~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 316 (476)
...+|..+|.+|.+ .++..+.++.|...+.+.| .. ..+|..+..+|.+.++++.|+...-.....
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~---~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~ 316 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ---AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 316 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT---TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH
Confidence 99999999998875 4566666666665555544 33 335678899999999999999877665443
Q ss_pred -------CCCcHHHHHHHHHHHH
Q 011845 317 -------NSQSYITWMTWAQLEE 332 (476)
Q Consensus 317 -------~p~~~~~~~~l~~~~~ 332 (476)
.+.+.++++....+|.
T Consensus 317 ~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 317 QFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHH
Confidence 5667788888777777
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=1.5e-20 Score=175.70 Aligned_cols=236 Identities=12% Similarity=0.075 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-------cH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQMEMQQENNLAARQLFERAVQASPK-------NR 182 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------~~ 182 (476)
.++..|..+...|++++|+..|++++...+ ....++..+|.++...|++++|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999998743 23558899999999999999999999999986442 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCHH
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR------DPVLLQSLALLEYKYSTANLARKLFRRASE-----IDPRHQP 251 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 251 (476)
.++..+|.++...|++++|+..+++++...+. ...++.++|.++...|++++|+.+|++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 67889999999999999999999999886431 235788899999999999999999999998 6777788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHccCCC--ChhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCcHHHHHH
Q 011845 252 VWIAWGWMEWKEGNLDTARELYERALSIDST--TESAARCLQAWGVLEQRVGN---LSAARRLFRSSLNINSQSYITWMT 326 (476)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 326 (476)
++..+|.++...|++++|+.++++++++.+. ++.....+..++.++...|+ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 9999999999999999999999999987543 23333345677888888888 88888888873 233445567788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhhh
Q 011845 327 WAQLEEDQGNSVRAEEIRNLYFQQRT 352 (476)
Q Consensus 327 l~~~~~~~g~~~~A~~~~~~~~~~~~ 352 (476)
+|.++...|++++|...++++++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998888876444
No 85
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.87 E-value=4.8e-19 Score=174.39 Aligned_cols=349 Identities=13% Similarity=0.114 Sum_probs=279.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCC---HHHHHHHHHHhhccCC-CCChHHHHHHHHHHHHcCCH--------HHHHHHH
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSK---VAEARAIYAKGSQATQ-GENPYIWQCWAVLENKLGNI--------GKARELF 69 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~--------~~A~~~~ 69 (476)
+++...|.....|...+......|+ ++.+..+|++++...+ +.++.+|..+.......++. +.....|
T Consensus 91 raL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~F 170 (679)
T 4e6h_A 91 KLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAF 170 (679)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 3677899999999999999999999 9999999999998872 26788998888776665553 3344788
Q ss_pred HHHhh---c-CcCcHHHHHHHHHHHH---------HhCCHHHHHHHHHHhhccCCCc-H-HHH-----------------
Q 011845 70 DASTV---A-DKGHIAAWHGWAVLEL---------RQGNIKKARQLLAKGLKFCGGN-E-YIY----------------- 117 (476)
Q Consensus 70 ~~~~~---~-~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~~~p~~-~-~~~----------------- 117 (476)
++++. . ++....+|........ .+++.+.+..+|++++.. |.. . .+|
T Consensus 171 ErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~ 249 (679)
T 4e6h_A 171 QVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARR 249 (679)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHH
Confidence 88775 3 6667778877776543 345577888888888864 321 1 111
Q ss_pred --------------------------------------------------------HHHHHHHHHhc-------cHHHHH
Q 011845 118 --------------------------------------------------------QTLALLEAKAN-------RYEQAR 134 (476)
Q Consensus 118 --------------------------------------------------------~~la~~~~~~g-------~~~~A~ 134 (476)
..........+ ..+...
T Consensus 250 ~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~ 329 (679)
T 4e6h_A 250 HIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMT 329 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence 00000000000 123345
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 011845 135 NLFRQATKCNPKSCASWIAWSQMEMQQENNLAAR-QLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN- 212 (476)
Q Consensus 135 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 212 (476)
..|++++...|.++..|+.++..+...|+.++|. .+|++++...|.+..+|..++.+....|+++.|..+|++++...
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999997 99999999999999999999999999999999999999999752
Q ss_pred ----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCC-hhHH
Q 011845 213 ----------PR-----------DPVLLQSLALLEYKYSTANLARKLFRRASEI-DPRHQPVWIAWGWMEWKEGN-LDTA 269 (476)
Q Consensus 213 ----------~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~-~~~A 269 (476)
|. ...+|..++.+..+.|..+.|..+|.++++. .+....+|...+.+....++ ++.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 43 3457899999999999999999999999987 44556788888888777654 9999
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 270 RELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS---QSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
..+|+.+++..|+++.. +..++......|+.+.|..+|++++...| ....+|..+..+....|+.+.+..+.++
T Consensus 490 r~ife~~Lk~~p~~~~~---w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEY---INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHH---HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988655 45568888899999999999999999988 4668999999999999999999999999
Q ss_pred HHhhhhhh
Q 011845 347 YFQQRTEV 354 (476)
Q Consensus 347 ~~~~~~~~ 354 (476)
+.+..|+.
T Consensus 567 ~~~~~P~~ 574 (679)
T 4e6h_A 567 FFEKFPEV 574 (679)
T ss_dssp HHHHSTTC
T ss_pred HHHhCCCC
Confidence 99987753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=8.6e-21 Score=170.47 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhccHHHHH
Q 011845 61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG------NEYIYQTLALLEAKANRYEQAR 134 (476)
Q Consensus 61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~ 134 (476)
++++|+..|+++ |.++...|++++|+..|.+++.+.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777776 45566777778888777777766421 2456777888888888888888
Q ss_pred HHHHHHHhcCCCc------hhHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHcCCHHHH
Q 011845 135 NLFRQATKCNPKS------CASWIAWSQMEMQQ-ENNLAARQLFERAVQASPKN------RFAWHVWGIFEANMGFIDKG 201 (476)
Q Consensus 135 ~~~~~~~~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A 201 (476)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888887776533 34677888888885 88888888888888876643 45677888888888888888
Q ss_pred HHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-----HHHHHHHHHH--HcCChh
Q 011845 202 KKLLKIGHAVNPRDPV-------LLQSLALLEYKYSTANLARKLFRRASEIDPRHQP-----VWIAWGWMEW--KEGNLD 267 (476)
Q Consensus 202 ~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~ 267 (476)
+.+|++++...|.+.. ++..+|.++...|++++|+..|+++++++|+... .+..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888887776543 5677888888888888888888888888887554 2344555554 356788
Q ss_pred HHHHHHHHHHccCCCCh
Q 011845 268 TARELYERALSIDSTTE 284 (476)
Q Consensus 268 ~A~~~~~~a~~~~~~~~ 284 (476)
+|+..|++++.++|...
T Consensus 258 ~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHTTSSCCCHHHH
T ss_pred HHHHHhccCCccHHHHH
Confidence 88888888887777653
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=6.3e-20 Score=152.86 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
..+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555444455555555555
Q ss_pred hccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 161 QENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
.|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555544444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhccCC
Q 011845 241 RASEIDP 247 (476)
Q Consensus 241 ~~~~~~~ 247 (476)
++++..|
T Consensus 169 ~~~~~~~ 175 (186)
T 3as5_A 169 KANELDE 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 4444433
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=4.1e-20 Score=154.02 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLK 206 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 206 (476)
.|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCC
Q 011845 207 IGHAVNPR 214 (476)
Q Consensus 207 ~~~~~~~~ 214 (476)
+++...|+
T Consensus 169 ~~~~~~~~ 176 (186)
T 3as5_A 169 KANELDEG 176 (186)
T ss_dssp HHHHHHHC
T ss_pred HHHHcCCC
Confidence 55554444
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=2.2e-21 Score=155.51 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=64.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQ 132 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 132 (476)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQL-FERAVQASPKNRFAWHVWGIFEANMG 196 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~l~~~~~~~~ 196 (476)
|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44444444444444444444444444444444433332 24444444444444444444444333
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=4.6e-20 Score=156.79 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH----------------HHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA----------------WSQMEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3344444444444444444444444444444444433 455555555555555555555555555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST--ANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+ ...+...+.+++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 555555555555555555555555555555555555555555544443332 22333334333322211 123344444
Q ss_pred HHHHcCChhHHHHHHHHHHccCCC
Q 011845 259 MEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 259 ~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
++...|++++|+..|++++++.|+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 444455555555555555555544
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=3.4e-21 Score=154.38 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (476)
|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCHHHHHHHHHHHHHcC
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKL-FRRASEIDPRHQPVWIAWGWMEWKEG 264 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (476)
|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++...+.++...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44444444444444444444444444444444333322 23444444444444444444443333
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=1.1e-19 Score=154.43 Aligned_cols=167 Identities=11% Similarity=0.028 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHH----------------HHHHHHHhCCHHHHHHHHHHhhcc
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHG----------------WAVLELRQGNIKKARQLLAKGLKF 109 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~~ 109 (476)
+..++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444555555555556666666665555555555555554 555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCcHHHHHH
Q 011845 110 CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN--NLAARQLFERAVQASPKNRFAWHV 187 (476)
Q Consensus 110 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~ 187 (476)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 555555555555555555555555555555555555555555555555444332 2233333433332111 1123344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAVNP 213 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~~~ 213 (476)
+|.++...|++++|+..|+++++.+|
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44444444445555555555544444
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.85 E-value=1.8e-20 Score=167.52 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=70.4
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC--------GGNEYIYQTLALLEAKANRYEQARNLFRQATKC----- 143 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 143 (476)
|....++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+|++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3344555555555555555555555555555442 333445555555555555555555555555554
Q ss_pred ---CCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 144 ---NPKSCASWIAWSQMEMQQENNLAARQLFERAVQA--------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 144 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333445555555555555555555555555554 333344555555555555555555555555544
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.84 E-value=1.5e-19 Score=155.70 Aligned_cols=210 Identities=10% Similarity=-0.061 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchh---HHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCA---SWI 152 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 152 (476)
.+..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34567777777777777777777777777776655 356777777777777777777777777777777654 567
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTA 232 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 232 (476)
.+|.++...|.. ....+..++..+...|++++|+..|+++++..|+++.+...+..+....+.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 777777665532 112233455555666777777777777777777776544322221111000
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 011845 233 NLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRS 312 (476)
Q Consensus 233 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 312 (476)
.......+|.++...|++++|+..|+++++..|+++....++..+|.++.+.|++++|+..++.
T Consensus 146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0122355677777777777777777777777777766666677777777777777777777777
Q ss_pred HHhhCCCcH
Q 011845 313 SLNINSQSY 321 (476)
Q Consensus 313 al~~~p~~~ 321 (476)
+....|++.
T Consensus 210 l~~~~~~~~ 218 (225)
T 2yhc_A 210 IAANSSNTL 218 (225)
T ss_dssp HHHCCSCCC
T ss_pred HHhhCCCch
Confidence 776666543
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=3.3e-18 Score=152.53 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 011845 130 YEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN--NLAARQLFERAVQASPKNRFAWHVWGIFEANMGF-IDKGKKLLK 206 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 206 (476)
+++++.+++.++..+|.+..+|...+.++...|+ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4556666666666666666666666666655553 5666666666666666666666666666666665 356666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------
Q 011845 207 IGHAVNPRDPVLLQSLALLEYKY--------------STANLARKLFRRASEIDPRHQPVWIAWGWMEWKE--------- 263 (476)
Q Consensus 207 ~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 263 (476)
+++..+|.+..+|...+.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 66666666666666666555554 3467777778888888888777776655555544
Q ss_pred --CChhHHHHHHHHHHccCCCChhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 011845 264 --GNLDTARELYERALSIDSTTESAARCLQAWGVLE---QRVGNLSAARRLFRSSLNINSQSYITWMTWAQL 330 (476)
Q Consensus 264 --g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 330 (476)
+.++++++.++++++..|++.-. +..++.+. ...|..++...++.+.++++|-...-|..+..-
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~---l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWC---LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchH---HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 45778888888888888887322 33333222 235777888889999999998877766655443
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=4.2e-18 Score=151.84 Aligned_cols=229 Identities=10% Similarity=0.091 Sum_probs=171.0
Q ss_pred HcCCHH-HHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCC----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 58 KLGNIG-KARELFDASTVADKGHIAAWHGWAVLELRQGN----------IKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 58 ~~g~~~-~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
+.|.+. +|+.++.+++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 455554 67888888888888888888777777766655 5777888888888888888888888888777
Q ss_pred hcc--HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--------
Q 011845 127 ANR--YEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN-NLAARQLFERAVQASPKNRFAWHVWGIFEANM-------- 195 (476)
Q Consensus 127 ~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-------- 195 (476)
.|. +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.++...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 773 7788888888888888888888888887777777 57788888888888888888888777777766
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 011845 196 ------GFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY-----------STANLARKLFRRASEIDPRHQPVWIAWGW 258 (476)
Q Consensus 196 ------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 258 (476)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++.-.+..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 4577788888888888888888887665555544 35678888888888888887544444443
Q ss_pred HHH---HcCChhHHHHHHHHHHccCCCChhH
Q 011845 259 MEW---KEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 259 ~~~---~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
+.. ..|..++...++.+.++++|.....
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 322 2567778888888888888876544
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=7e-20 Score=163.62 Aligned_cols=222 Identities=17% Similarity=0.147 Sum_probs=163.2
Q ss_pred hcCCHHHHHHHHHHhhcc-------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CcCcHHHHHHHH
Q 011845 23 KQSKVAEARAIYAKGSQA-------TQGENPYIWQCWAVLENKLGNIGKARELFDASTVA--------DKGHIAAWHGWA 87 (476)
Q Consensus 23 ~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la 87 (476)
..|++++|+..|+++++. .+|..+.++..+|.++...|++++|+..|++++.. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777777652 33556788999999999999999999999999976 466678899999
Q ss_pred HHHHHhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCchhHH
Q 011845 88 VLELRQGNIKKARQLLAKGLKF--------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC--------NPKSCASW 151 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~ 151 (476)
.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999987 4666789999999999999999999999999998 67777899
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCH
Q 011845 152 IAWSQMEMQQENNLAARQLFERAVQA---------SPKNRFAWHVWGIFEANMGFID------KGKKLLKIGHAVNPRDP 216 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~~~~a~~~---------~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~ 216 (476)
..+|.++...|++++|+.++++++.. .+.....+..++..+...+... .+...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999986 3333445555555554433322 22222222222223333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 011845 217 VLLQSLALLEYKYSTANLARKLFRRASE 244 (476)
Q Consensus 217 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 244 (476)
.++..+|.++...|++++|+.+|+++++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555555555554443
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=7.6e-19 Score=151.35 Aligned_cols=206 Identities=8% Similarity=-0.103 Sum_probs=150.8
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHH---HH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIA---AW 83 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~ 83 (476)
++..++.+|..++..|++++|+..|++++... |.+ ..+++.+|.++...|++++|+..|+++++.+|+++. ++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 45678888999999999999999999998876 544 468888899999999999999999999988888763 78
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
+.+|.++...|.. ....+..++..+...|++++|+..|+++++..|+++.++..+..+....+.
T Consensus 82 ~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 82 YMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 8888888776532 112344566667778899999999999999999887665433222211111
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 164 NLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP---VLLQSLALLEYKYSTANLARKLFR 240 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~ 240 (476)
. ......+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++
T Consensus 146 ~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 146 L-----------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp H-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 12335678888888889999999988888888875 568888889999999999988888
Q ss_pred HHhccCCCC
Q 011845 241 RASEIDPRH 249 (476)
Q Consensus 241 ~~~~~~~~~ 249 (476)
.+....|++
T Consensus 209 ~l~~~~~~~ 217 (225)
T 2yhc_A 209 IIAANSSNT 217 (225)
T ss_dssp HHHHCCSCC
T ss_pred HHHhhCCCc
Confidence 888877765
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.83 E-value=2.6e-18 Score=153.76 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG-NIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
.++..+..+....+..++|+..+.+++..+ |.+..+|+..+.++...| .+++++..++.++..+|++..+|...+.++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 334444444444445556666666666665 666666666666666666 366666666666666666666666666666
Q ss_pred HHh-C-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH--------HHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 91 LRQ-G-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE--------QARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 91 ~~~-~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
... + ++++++.++.++++.+|.+..+|...+.+....|.++ +++++++++++.+|.+..+|...+.++..
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 655 5 5666666666666666666666666666666555555 55666666666666666666666555555
Q ss_pred hcc-------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845 161 QEN-------NLAARQLFERAVQASPKNRFAWHVWGIFEANMGF 197 (476)
Q Consensus 161 ~~~-------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 197 (476)
.+. ++++++++.+++..+|++..+|+.+..++...|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 554 4555555555555555555555555555544443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=2.5e-19 Score=148.00 Aligned_cols=167 Identities=16% Similarity=0.022 Sum_probs=87.7
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHH
Q 011845 7 WPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGW 86 (476)
Q Consensus 7 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 86 (476)
+|...+.++.+|..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+| ++..+..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 34445555566666666666666666666665555 55566666666666666666666666666655555 44444333
Q ss_pred HHHHH-HhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcc
Q 011845 87 AVLEL-RQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS--CASWIAWSQMEMQQEN 163 (476)
Q Consensus 87 a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~ 163 (476)
+.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 33221 11222234555555555555555555555555555555555555555555555543 3355555555555555
Q ss_pred HHHHHHHHHHHH
Q 011845 164 NLAARQLFERAV 175 (476)
Q Consensus 164 ~~~A~~~~~~a~ 175 (476)
.++|+..|++++
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 555555555544
No 101
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.81 E-value=1.1e-17 Score=149.64 Aligned_cols=254 Identities=9% Similarity=0.033 Sum_probs=144.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG-NIKKARQLLAKGLKFCGGNEYIYQTLALLEAKA 127 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 127 (476)
+..+..+....+..++|+.++.+++..+|++..+|...+.++...| .+++++.++.+++..+|++..+|...+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333344444455566777777777777777777777777777776 477777777777777777777777777776666
Q ss_pred -c-cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHH--------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845 128 -N-RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNL--------AARQLFERAVQASPKNRFAWHVWGIFEANMGF 197 (476)
Q Consensus 128 -g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 197 (476)
+ ++++++.++.++++.+|.+..+|...+.++...|.++ +++..++++++.+|.+..+|...+.++...+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 5 6667777777777777777777777766666666655 55666666666666665566665555555544
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhH---------
Q 011845 198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT--------- 268 (476)
Q Consensus 198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------- 268 (476)
.. .. ...++++++++.+++..+|++..+|+.+..++...|+...
T Consensus 217 ~~--------------~~-------------~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 217 AE--------------TS-------------SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp CC--------------CC-------------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred cc--------------cc-------------hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 10 00 0003455555555555555555555555545444443200
Q ss_pred -------H-HHHHHHHHccCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCCCcHHHHHHHHH
Q 011845 269 -------A-RELYERALSIDSTT------ESAARCLQAWGVLEQRVGNLSAARRLFRSSL-NINSQSYITWMTWAQ 329 (476)
Q Consensus 269 -------A-~~~~~~a~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 329 (476)
. -...+.+.+..... .....++.-++.+|...|+.++|.++|+... +.+|-....|...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 0 01111111111110 1113345556777777777777777777765 456666666555443
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=6.5e-19 Score=145.50 Aligned_cols=166 Identities=11% Similarity=-0.079 Sum_probs=117.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
.....++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 33455677777788888888888888888888888888888888888888888888888888887777 66655554444
Q ss_pred HH-HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHH
Q 011845 124 EA-KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 124 ~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~ 200 (476)
.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22 22233346777777777777777777777777777777777777777777777654 4467777777777777777
Q ss_pred HHHHHHHHHh
Q 011845 201 GKKLLKIGHA 210 (476)
Q Consensus 201 A~~~~~~~~~ 210 (476)
|+..|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=2.3e-18 Score=153.97 Aligned_cols=167 Identities=11% Similarity=-0.079 Sum_probs=94.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLAL 122 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 122 (476)
|.+...+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555544444444444
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVWGIFEANMGFIDK 200 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~ 200 (476)
.+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 45555555555555555555555555555555555555555555555555555555555 4555555555555555555
Q ss_pred HHHHHHHHH
Q 011845 201 GKKLLKIGH 209 (476)
Q Consensus 201 A~~~~~~~~ 209 (476)
|...|++++
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=6.2e-19 Score=136.33 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=76.7
Q ss_pred cccCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 4 IDYWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 4 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
..++|+.++.+..+|..++..|+|++|+..|+++++.. |.++.+|..+|.++..+|++++|+..|+++++.+|+++.+|
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34566666666666666666666666666666666665 66666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
+.+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666666666666666555544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=3.9e-18 Score=152.51 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666655555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCChhH
Q 011845 191 FEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH--QPVWIAWGWMEWKEGNLDT 268 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 268 (476)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 56666666666666666666666666666666666666666666666666666666665 5666666666666666666
Q ss_pred HHHHHHHHH
Q 011845 269 ARELYERAL 277 (476)
Q Consensus 269 A~~~~~~a~ 277 (476)
|...|++++
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=2e-18 Score=133.49 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=65.2
Q ss_pred hcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHH
Q 011845 74 VADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIA 153 (476)
Q Consensus 74 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 153 (476)
.++|+....+..+|..+++.|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGI 190 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 190 (476)
+|.++...|++++|+..|+++++++|++..++..++.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5555555555555555555555555555555554444
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=2.4e-18 Score=155.65 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=116.3
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--D----PVLLQSLAL 224 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~ 224 (476)
+|...|++++|+..|.+++.+.+. ...++..+|.+|...|++++|+.+|++++.+.+. + ..++..+|.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555554444321 1234555566666666666666666666554321 1 245667777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh---hHHHHHHHHHH
Q 011845 225 LEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE---SAARCLQAWGV 295 (476)
Q Consensus 225 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~l~~ 295 (476)
++.. |++++|+.+|++++.+.+.. ..++.++|.++...|++++|+.+|++++.+.|... .....+..+|.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7777 77777777777777765432 46778888888888888888888888888754432 23346777888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHcCChHHHHH
Q 011845 296 LEQRVGNLSAARRLFRSSLNINSQSYI-----TWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 342 (476)
++...|++++|+.+|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888899999999999999 8886542 233444443 4566554433
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.78 E-value=4.6e-18 Score=153.80 Aligned_cols=184 Identities=13% Similarity=0.051 Sum_probs=116.9
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHH
Q 011845 122 LLEAKANRYEQARNLFRQATKCNPKS------CASWIAWSQMEMQQENNLAARQLFERAVQASPK------NRFAWHVWG 189 (476)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~ 189 (476)
.+|...|++++|+..|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+. ...++..+|
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555544443211 234555566666666666666666666554321 134566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHH
Q 011845 190 IFEANMGFIDKGKKLLKIGHAVNPRD------PVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWG 257 (476)
Q Consensus 190 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~ 257 (476)
.+|.. |++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.|.. ...+..+|
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77766 77777777777777665432 4567788888888888888888888888775533 24677888
Q ss_pred HHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHHHhCCHHHHHH
Q 011845 258 WMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQRVGNLSAARR 308 (476)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 308 (476)
.++...|++++|+.+|++++ ..|..... ...+..++..+ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999999999999 88876432 22344445444 4566544433
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=1.1e-17 Score=164.95 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 60 GNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQ 139 (476)
Q Consensus 60 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 139 (476)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCH
Q 011845 140 ATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANM---GFIDKGKKLLKIGHAVNPRDP 216 (476)
Q Consensus 140 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~ 216 (476)
+++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++... |++++|...++++++.+|.+.
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 66666666666666666666666666666666666666666666666666666666 666666666666666666655
Q ss_pred HHHHHHH
Q 011845 217 VLLQSLA 223 (476)
Q Consensus 217 ~~~~~la 223 (476)
..+..++
T Consensus 163 ~~~~~l~ 169 (568)
T 2vsy_A 163 EPFAFLS 169 (568)
T ss_dssp CHHHHTT
T ss_pred ChHHHhC
Confidence 5444443
No 110
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.77 E-value=9.2e-17 Score=140.87 Aligned_cols=257 Identities=10% Similarity=-0.025 Sum_probs=193.0
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
..++..++.+ +-.+-.|+|..++.-..+. .+.........+.+++..+|++... .. .+....+...++
T Consensus 11 ~~~~~~lf~i-kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la 78 (310)
T 3mv2_B 11 SQDPMDYFNI-KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYV 78 (310)
T ss_dssp ----CCTHHH-HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHH
T ss_pred CCCcHHHHHH-HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHH
Confidence 3455556655 4555689999999855443 2223345666677888889988742 11 222233444555
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHhccHH
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQQENNL 165 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~ 165 (476)
..+. +. |+..+++.+...+.+...+..+|.++...|++++|+.++.+.+..+| .+.+++..++.++...|+.+
T Consensus 79 ~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 79 QFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp HHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 5442 22 88999999887666677778999999999999999999999999887 78889999999999999999
Q ss_pred HHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHH
Q 011845 166 AARQLFERAVQASPK------NRFAWHVWGIFEANMG--FIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKYSTANLA 235 (476)
Q Consensus 166 ~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A 235 (476)
.|.+.++++.+.+|+ ...+...-+.+....| ++.+|..+|+++....|+ .+..+++ ++..+|++++|
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 999999999999883 2233333344466556 899999999999888886 2334444 88999999999
Q ss_pred HHHHHHHhcc----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 236 RKLFRRASEI----------DPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 236 ~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
...++.+++. +|+++.++.+++.+....|+ +|.++++++.+..|+++.+
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 9999988776 48899999899888888887 8899999999999999765
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.1e-17 Score=165.07 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=138.4
Q ss_pred hCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845 93 QGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFE 172 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 172 (476)
.|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCC
Q 011845 173 RAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY---STANLARKLFRRASEIDPRH 249 (476)
Q Consensus 173 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~ 249 (476)
++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.++... |++++|+..++++++.+|.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHHHH
Q 011845 250 QPVWIAWG 257 (476)
Q Consensus 250 ~~~~~~l~ 257 (476)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 77777666
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=4.2e-18 Score=135.46 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=89.3
Q ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
++.+|+.+|.++...|++++|+..|+++++..|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777777777777654
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=8.1e-18 Score=145.65 Aligned_cols=196 Identities=16% Similarity=0.093 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHhhcCcCcHHHHHHH-------HHHHHHhCCHHHHHHHHHHhhccCCCc------------------
Q 011845 59 LGNIGKARELFDASTVADKGHIAAWHGW-------AVLELRQGNIKKARQLLAKGLKFCGGN------------------ 113 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------ 113 (476)
.+++..|...|.+++..+|..+++|..+ +.++...++..+++..+++.+.+.|..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4444444444444444444444444444 444444444444444444444433321
Q ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc--HHHHHHH
Q 011845 114 ---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN--RFAWHVW 188 (476)
Q Consensus 114 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l 188 (476)
..+...++.++...|++++|.+.|..++...|++. +.+.+|.++.+.+++++|+..|+.+....+.. ..+++.+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 12233344445555555555555555444444444 44455555555555555555554443321110 2244555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 011845 189 GIFEANMGFIDKGKKLLKIGHAVN--PR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAW 256 (476)
Q Consensus 189 ~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 256 (476)
|.++..+|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..|
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 555555555555555555554322 22 2334555555555555555555555555555555 4444433
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.76 E-value=7.4e-18 Score=145.87 Aligned_cols=201 Identities=13% Similarity=0.036 Sum_probs=153.1
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHH-------HHHHHHhccHHHHHHHHHHHHHcCCCc-----------------
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAW-------SQMEMQQENNLAARQLFERAVQASPKN----------------- 181 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~~~~----------------- 181 (476)
..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46777777777777777777777777777 677777777777777777777765543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHH
Q 011845 182 ----RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH--QPVWIA 255 (476)
Q Consensus 182 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~ 255 (476)
..+...++.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+.+....+.. ..+++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 24455678888888888888888888888888777 88888888888888888888888776643221 357888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHccCCCChh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 011845 256 WGWMEWKEGNLDTARELYERALSIDSTTES-AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQ 329 (476)
Q Consensus 256 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 329 (476)
+|.++...|++++|+.+|++++... ..+. ....++.+|.++.++|+.++|...|++++..+|+ ..++..|..
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8999999999999999999888543 2121 3446778899999999999999999999999988 776655543
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=3.2e-18 Score=136.09 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 011845 170 LFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH 249 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 249 (476)
.+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34445555555556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
+.+|+++|.++...|++++|+..|++++++.|+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 6666666666666666666666666666665554
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=1.3e-17 Score=148.53 Aligned_cols=194 Identities=9% Similarity=-0.041 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLL 205 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 205 (476)
..|++++|+..|+++++.+|++...+...+..... ..++...........|.+..+...++.++ .|++++|++.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 44444444444444444444332111111111111 11111111122223333333333333332 34555555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 011845 206 KIGHAVNPRDPVLLQSLALLEYKY-STANLARKLFRRASE 244 (476)
Q Consensus 206 ~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~ 244 (476)
+++++..|++......++.++... +.+++|..+|.++.+
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555555554444444444444433 344555555555443
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.74 E-value=1.9e-17 Score=147.40 Aligned_cols=198 Identities=15% Similarity=0.028 Sum_probs=115.6
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
|.+...+..+|..+...|++++|+..|++++..+|.+..++..+|.+|...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR 236 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 236 (476)
++...|++++|+..|+++++.+|++...+...+.... ...++...........|.++.+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 6666666666666666666666544211111111111 111122222222334455555555555543 46666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHcc
Q 011845 237 KLFRRASEIDPRHQPVWIAWGWMEWKE-GNLDTARELYERALSI 279 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 279 (476)
+.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 666666666666665555555555544 5566666666666553
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.74 E-value=2.4e-14 Score=137.21 Aligned_cols=361 Identities=11% Similarity=0.085 Sum_probs=255.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhc---CcCcHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN-IGKARELFDASTVA---DKGHIAAWHG 85 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~p~~~~~~~~ 85 (476)
.+...+..+...+-.|+++.+..+|++++... | +..+|..+.....+.++ .+.....|+.++.. +|.+...|..
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~-p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKS-Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC-C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 44455555656666699999999999999976 5 88899999888877774 45677888888863 6778899998
Q ss_pred HHHHHH----HhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHHH-------------HHhccHHHHHHHHHHHHhcCCC-
Q 011845 86 WAVLEL----RQGNIKKARQLLAKGLKFCGGNE-YIYQTLALLE-------------AKANRYEQARNLFRQATKCNPK- 146 (476)
Q Consensus 86 la~~~~----~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~-------------~~~g~~~~A~~~~~~~~~~~p~- 146 (476)
.+..+. .+|+.+.+..+|++++..-+.+. ..|......- ...+.+..|...|+.+....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 888765 45778899999999998532222 2232222211 1223455566666666554332
Q ss_pred chhHHHHHHHHHHHhc-------cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 011845 147 SCASWIAWSQMEMQQE-------NNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLL 219 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 219 (476)
+...|..+.......+ ..+.....|++++...|..+.+|..++..+...|+.+.|..+|++++.. |.+...+
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 4446766655543321 1355778999999999999999999999999999999999999999999 9988777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHH
Q 011845 220 QSLALLEYKYSTANLARKLFRRASEID----------PRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARC 289 (476)
Q Consensus 220 ~~la~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 289 (476)
..++... ..+ +....+....... +....+|...+....+.++.+.|...|+++ . .|... ..+
T Consensus 250 ~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~--~~v 321 (493)
T 2uy1_A 250 LYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG--PHV 321 (493)
T ss_dssp HHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC--HHH
T ss_pred HHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC--hHH
Confidence 7655541 111 1111111111101 112367888888888888999999999999 4 34321 335
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccc
Q 011845 290 LQAWGVLEQRVG-NLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDII 368 (476)
Q Consensus 290 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 368 (476)
+...+.+....+ +.+.|..+|+.+++..|+++..|..++.++...|+.+.|..+++++.. ...++......-...|+.
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCH
Confidence 566677766666 699999999999999999999999999999999999999999998732 334444444445566898
Q ss_pred hHHHHHHHHHhccc
Q 011845 369 DPALDRIKQLLNLE 382 (476)
Q Consensus 369 ~~A~~~~~~al~~~ 382 (476)
+.+...++++++.-
T Consensus 401 ~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 401 ELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888899888643
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=3.7e-16 Score=132.96 Aligned_cols=174 Identities=18% Similarity=0.147 Sum_probs=102.8
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhC----CHHHHHHHHH
Q 011845 29 EARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQG----NIKKARQLLA 104 (476)
Q Consensus 29 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~ 104 (476)
+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455566666543 35666666666666666666666666666543 456666666666665 4 5666666666
Q ss_pred HhhccCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHH----hccHHHHHHHHHHH
Q 011845 105 KGLKFCGGNEYIYQTLALLEAK----ANRYEQARNLFRQATKCNP--KSCASWIAWSQMEMQ----QENNLAARQLFERA 174 (476)
Q Consensus 105 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~a 174 (476)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6643 3456666666666655 5566666666666666555 235566666666665 55566666666666
Q ss_pred HHcCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 011845 175 VQASPKNRFAWHVWGIFEANM-G-----FIDKGKKLLKIGHAV 211 (476)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~ 211 (476)
++. +.++.+++.+|.+|... | ++++|+.+|+++.+.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 555 44444555666655542 2 556666666655554
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=1.2e-18 Score=159.40 Aligned_cols=151 Identities=8% Similarity=0.057 Sum_probs=88.5
Q ss_pred hccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHH
Q 011845 127 ANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------------RFAWHVWGIF 191 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~ 191 (476)
++++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555556666666666666666666666666665555 4555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHH-H
Q 011845 192 EANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTA-R 270 (476)
Q Consensus 192 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~ 270 (476)
+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666665555 3
Q ss_pred HHHHHHH
Q 011845 271 ELYERAL 277 (476)
Q Consensus 271 ~~~~~a~ 277 (476)
..|++++
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=7.3e-19 Score=160.82 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=119.2
Q ss_pred cCCHHHHHHHHHH----hhccCCCCChHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhcCcCcHHHHHHHH
Q 011845 24 QSKVAEARAIYAK----GSQATQGENPYIWQCWAVLEN------------KLGNIGKARELFDASTVADKGHIAAWHGWA 87 (476)
Q Consensus 24 ~g~~~~A~~~~~~----~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 87 (476)
.+.+++|+..+.. ++... |.. ++...|.... .++++++|+..|++++..+|....++..+|
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~-p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLK-PSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEEC-TTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEEC-Ccc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 4567788887777 66654 443 2333332221 345666777777777777777777777788
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI 152 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 152 (476)
.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88888888888888888887777776 456666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKG-KKLLKIGH 209 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~ 209 (476)
.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|++++
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666665 33444443
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=4.8e-16 Score=132.22 Aligned_cols=173 Identities=16% Similarity=0.054 Sum_probs=86.2
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc----cHHHHHHHHHHH
Q 011845 99 ARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE----NNLAARQLFERA 174 (476)
Q Consensus 99 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a 174 (476)
|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 33444444432 34444444444444444444444444444432 244444455554444 3 455555555554
Q ss_pred HHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Q 011845 175 VQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNP--RDPVLLQSLALLEYK----YSTANLARKLFRRASE 244 (476)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~ 244 (476)
.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 32 2344455555555544 4555555555555555444 225555555555555 5555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHcc
Q 011845 245 IDPRHQPVWIAWGWMEWKE-G-----NLDTARELYERALSI 279 (476)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~ 279 (476)
. |.++.+++.+|.+|... | ++++|+.+|+++.+.
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 34445555555555442 2 555666666655554
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=3.9e-17 Score=130.20 Aligned_cols=116 Identities=8% Similarity=-0.024 Sum_probs=73.6
Q ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 011845 67 ELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 67 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
++.+++.+|.++...|++++|+..|+++++..|+++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 666666666666666666666666666666655544
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=8.3e-17 Score=128.28 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=59.2
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 011845 171 FERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQ 250 (476)
Q Consensus 171 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 250 (476)
|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTE 284 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 284 (476)
.+++.+|.++...|++++|+..|++++++.|+++
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5555555555555555555555555555544443
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=9.5e-16 Score=120.00 Aligned_cols=131 Identities=19% Similarity=0.316 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN 128 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 128 (476)
++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 444444444444444444444444444444444444444444444444333
No 126
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.70 E-value=9.6e-16 Score=134.42 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=178.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGH-IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYE 131 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 131 (476)
.+-.+-.|+|..++.-..+ ..|.+ ....+.+.+++..+|++... .. .+....+...++..+. +.
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc--
Confidence 3445678999998885443 33333 34556677888888887642 11 2223334445555442 22
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASP--KNRFAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
|+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+| .+.+++...+.++...|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888877655666778889999999999999999999988886 788888899999999999999999999988
Q ss_pred hcCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHcc
Q 011845 210 AVNPR------DPVLLQSLALLEYKYS--TANLARKLFRRASEIDPR--HQPVWIAWGWMEWKEGNLDTARELYERALSI 279 (476)
Q Consensus 210 ~~~~~------~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 279 (476)
+.+|+ ...+...-+++....| ++.+|..+|+++.+..|+ .+..+++ ++..+|++++|...++.+++.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 88873 2223333354455555 888999999998888876 2333333 788889999999999877776
Q ss_pred C----------CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHH
Q 011845 280 D----------STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITW 324 (476)
Q Consensus 280 ~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 324 (476)
. |++ ..++.+++.+....|+ +|.++++++.+.+|+++.+.
T Consensus 241 ~p~~~~k~~~~p~~---~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 241 YYSVEQKENAVLYK---PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHTTTCHHHHSSH---HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccccCCCCC---HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 3 555 4457777778888887 88889999999999888653
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=1.6e-15 Score=118.62 Aligned_cols=132 Identities=19% Similarity=0.317 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP 213 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 213 (476)
|++++|+..+++++...|.+..++..++.++...|++++|...+++++...|
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555555555555555555555555555555555555554444
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=1.6e-16 Score=125.89 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=58.0
Q ss_pred HHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845 68 LFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 68 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 147 (476)
.|++++..+|++...++.+|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+.+++.+|.++...|++++|+..|++++...|+++
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 55555555555555555555555555555544443
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=2.4e-16 Score=124.90 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=80.3
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 32 AIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
..|++++... |.+...++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|
T Consensus 5 ~~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3455555555 556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 112 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
+++.+++.+|.++...|++++|+..|+++++..|+++........+..
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 666666666666666666666666666666666665554444444333
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-16 Score=152.03 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=147.4
Q ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc--cH
Q 011845 97 KKARQLLAKGLKFCGGNEYIYQTLALLEAKANR----------YEQARNLFRQATKCNPKSCASWIAWSQMEMQQE--NN 164 (476)
Q Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~ 164 (476)
++|+..+.+++..+|++..+|...+.++...|+ +++++..++++++.+|++..+|...+.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 455666666666666666666666666666666 777888888888888888888888888877777 56
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------
Q 011845 165 LAARQLFERAVQASPKNRFAWHVWGIFEANMG-FIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY-------------- 229 (476)
Q Consensus 165 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 229 (476)
++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 88888888888888888888888888887777 778888888888888888888888888777764
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhH------------HHHHHHHHHccCCC
Q 011845 230 STANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDT------------ARELYERALSIDST 282 (476)
Q Consensus 230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~a~~~~~~ 282 (476)
+.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|.
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 567999999999999999999999999999999888766 56667777777765
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.67 E-value=2.4e-13 Score=130.27 Aligned_cols=334 Identities=14% Similarity=0.125 Sum_probs=239.1
Q ss_pred cccccCCCCchhHHHHHHHHHhcCC-HHHHHHHHHHhhccC--CCCChHHHHHHHHHHH----HcCCHHHHHHHHHHHhh
Q 011845 2 KCIDYWPEDGRPYVALGKVLSKQSK-VAEARAIYAKGSQAT--QGENPYIWQCWAVLEN----KLGNIGKARELFDASTV 74 (476)
Q Consensus 2 ~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~ 74 (476)
+++...| +.++|........+.+. .+.....|+.++... .+.+..+|..++..+. ..|+.+.+..+|++++.
T Consensus 39 ral~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 39 RCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 4566667 88899988888877764 456778889888642 2567899998887754 35678999999999998
Q ss_pred cCcCcH-HHHHHHHHHHH-------------HhCCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHh--c-----cHHH
Q 011845 75 ADKGHI-AAWHGWAVLEL-------------RQGNIKKARQLLAKGLKFCGG-NEYIYQTLALLEAKA--N-----RYEQ 132 (476)
Q Consensus 75 ~~p~~~-~~~~~la~~~~-------------~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~--g-----~~~~ 132 (476)
..+.+. ..|........ ..+.+..|...++.+....+. +...|..+...-... | ....
T Consensus 118 ~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 118 TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 643333 33333322221 122344455555555543332 344665555543321 1 1456
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011845 133 ARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN 212 (476)
Q Consensus 133 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 212 (476)
....|++++...|..+..|..++..+...|+.++|..+|++++.. |.+...|...+... .. ++....+.......
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhh
Confidence 778999999999999999999999999999999999999999999 99887777655542 11 11111111111101
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHccCC
Q 011845 213 ----------PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEG-NLDTARELYERALSIDS 281 (476)
Q Consensus 213 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 281 (476)
+....+|..++....+.+..+.|..+|+++ ...+....+|...+.+....+ +.+.|..+|+.+++..|
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 112357888888888888999999999999 433345677877777777666 69999999999999988
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 282 TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
+.+.. +..++......|+.+.|...|+++ +.....|..+..+....|+.+.+..++++...
T Consensus 352 ~~~~~---~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLL---KEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHH---HHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87654 444578888999999999999998 45688999999999999999999999888876
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=8.4e-15 Score=124.77 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=114.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
...++.+|..+...|++++|+..|++++ +.++.++..+|.++...|++++|+..|++++..+|.++.+++.+|.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3457788999999999999999999885 236788899999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 011845 91 LRQGNIKKARQLLAKGLKFCGGNE----------------YIYQTLALLEAKANRYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 147 (476)
...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999998777655 888888888888888888888888888888876
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=4e-16 Score=131.41 Aligned_cols=151 Identities=12% Similarity=-0.030 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH----------------
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHI---------------- 80 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------- 80 (476)
.+......|++++|.+.+....... +.....+..+|..++..|++++|+..|++++...|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344444555555555554443332 33445556666666666666666666666666555554
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hccHHHHH
Q 011845 161 QENNLAAR 168 (476)
Q Consensus 161 ~~~~~~A~ 168 (476)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444443
No 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=3.6e-16 Score=131.68 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcH----------------
Q 011845 51 CWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNE---------------- 114 (476)
Q Consensus 51 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------- 114 (476)
..+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3445556677777777777766655566677788888888888888888888888888777765
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN 194 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 194 (476)
.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56666777777777777777777777777666666677777777777777777777777776666666666666666666
Q ss_pred cCCHHHHH
Q 011845 195 MGFIDKGK 202 (476)
Q Consensus 195 ~~~~~~A~ 202 (476)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 65555544
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5e-15 Score=114.63 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hccHHHHHHHHHHHHHcC
Q 011845 161 QENNLAARQLFERAVQAS 178 (476)
Q Consensus 161 ~~~~~~A~~~~~~a~~~~ 178 (476)
.|++++|+..|+++++.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 444444444444444444
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.9e-15 Score=115.98 Aligned_cols=111 Identities=8% Similarity=-0.090 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
..+..+|..++..|++++|+..|++++..+|.++.+|..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444555555555555444444444444455555555
Q ss_pred hccHHHHHHHHHHHHhcC------CCchhHHHHHHHH
Q 011845 127 ANRYEQARNLFRQATKCN------PKSCASWIAWSQM 157 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~ 157 (476)
.|++++|+..|+++++.+ |.+..++..++.+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 555555555555555444 4444444444443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=2.6e-15 Score=123.89 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=84.6
Q ss_pred HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 011845 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALL-EYKYSTA--NLAR 236 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~--~~A~ 236 (476)
..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 456666666666666666666666666666666666677777777776666666666666666666 5566666 7777
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 237 KLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
..|++++..+|+++.++..+|.++...|++++|+..|++++...|++...
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 77777777777777777777777777777777777777777777666543
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=1.4e-14 Score=123.47 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK 126 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 126 (476)
..++.+|.++...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 446677888888888888888888875 23 667888888888888888888888888888888888888888888888
Q ss_pred hccHHHHHHHHHHHHhcCCCch----------------hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 127 ANRYEQARNLFRQATKCNPKSC----------------ASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 127 ~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
.|++++|+..|+++++..|.+. .++..+|.++...|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888888777665 778888888888888888888888888888765
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=3e-14 Score=127.87 Aligned_cols=168 Identities=8% Similarity=-0.094 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDP------VLLQSLALLEYKYSTANLARKLFRRASEIDPRH------Q 250 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 250 (476)
..+...+..+...|++++|+..+.+++...+... ..+..+|.++...|++++|+..+++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445556666677777777777777776665543 234556777777778888888888877654332 4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHH---ccCCCChhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------c
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERAL---SIDSTTESAA-RCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ------S 320 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~---~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~ 320 (476)
.++..+|.+|...|++++|+.+|++++ +..|++.... .++.++|.+|...|++++|+.+|++++.+.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 577788888888888888888888887 4455543322 56778888888888888888888888876432 2
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 011845 321 YITWMTWAQLEEDQGNSVRA-EEIRNLYFQQ 350 (476)
Q Consensus 321 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 350 (476)
..++.++|.++...|++++| ...+++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888888888888888 6667776653
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.64 E-value=1.5e-14 Score=117.69 Aligned_cols=130 Identities=11% Similarity=-0.029 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 011845 46 PYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEA 125 (476)
Q Consensus 46 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 125 (476)
+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHH--HHHHHHHhccHHHHHHHHHHHH
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIA--WSQMEMQQENNLAARQLFERAV 175 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~ 175 (476)
..|++++|+.+|++++...|.+..++.. ++..+...|++++|+..+.++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666666666666555533 3333555666666666665544
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.3e-14 Score=141.11 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC--CH
Q 011845 131 EQARNLFRQATKCNPKSCASWIAWSQMEMQQEN----------NLAARQLFERAVQASPKNRFAWHVWGIFEANMG--FI 198 (476)
Q Consensus 131 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~ 198 (476)
++|+..+++++..+|++..+|...+.++...|+ +++++..++++++.+|++..+|...+.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 455666666666666666666666666666555 556666666666666666666666666666555 44
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845 199 DKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS-TANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 199 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|...+.++...+...++
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~-------- 197 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS-------- 197 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS--------
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc--------
Confidence 56666666666666666666666555555555 555555555555555555555555555555544332110
Q ss_pred ccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHH
Q 011845 278 SIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 339 (476)
.+... ...+.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 198 --~~~~~-------------~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 --GPQGR-------------LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp --SSCCS-------------SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred --ccccc-------------ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 00000 001457999999999999999999999999999998887554
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=2.3e-15 Score=124.28 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HHHhccH--HHHHH
Q 011845 59 LGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL-EAKANRY--EQARN 135 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~--~~A~~ 135 (476)
.|++++|+..+++++..+|.++.+|..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555554 4444444 55555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 136 LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
.+++++..+|+++.++..+|.++...|++++|+..|++++...|++
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555555555555555555555555555554444
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=5.6e-14 Score=126.05 Aligned_cols=169 Identities=8% Similarity=-0.066 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNR------FAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD------ 215 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 215 (476)
...+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455566777777888888888877777666543 334567777788888888888888888765433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC---Chh
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRAS---EIDPRHQ----PVWIAWGWMEWKEGNLDTARELYERALSIDST---TES 285 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~ 285 (476)
..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|...|++++|+.++++++.+.+. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578888888888899999999888888 4455543 57888999999999999999999998876432 222
Q ss_pred HHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhh
Q 011845 286 AARCLQAWGVLEQRVGNLSAA-RRLFRSSLNI 316 (476)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 316 (476)
...++..+|.++...|++++| ..+|++++.+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 356788889999999999999 7789988764
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=1.8e-14 Score=117.33 Aligned_cols=133 Identities=12% Similarity=0.017 Sum_probs=123.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
.+..++.+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45678999999999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHH--HHHHHHhccHHHHHHHHHHHHhc
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTL--ALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
+...|++++|+..+++++...|.+..++..+ +..+...|++++|+..+.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999888554 44588899999999999987654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=113.53 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 45 NPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 45 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
++..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555555555544555555555555555555555555555555554455555555555
Q ss_pred HHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 125 AKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 125 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
...|++++|+..|++++..+|.+..++..++.++...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 5555555555555555555554444444444444443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=112.99 Aligned_cols=121 Identities=9% Similarity=0.031 Sum_probs=85.9
Q ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845 76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWS 155 (476)
Q Consensus 76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 155 (476)
.|.+..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845 156 QMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196 (476)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 196 (476)
.++...|++++|+..|++++..+|.+..++..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777777777776666666666666554
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.61 E-value=1.4e-14 Score=112.53 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
...+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Q 011845 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMG 196 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 196 (476)
..|++++|+..+++++...|++..++..++.++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444433
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.61 E-value=1.9e-14 Score=111.84 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011845 147 SCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLE 226 (476)
Q Consensus 147 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 226 (476)
+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 011845 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGN 265 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (476)
...|++++|+.+|+++++..|+++.++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555444
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.3e-14 Score=117.99 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
.++..+..+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|+++++++|.+..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCchhHHHHHH
Q 011845 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWS 155 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 155 (476)
+...|++++|+..|+++++++|++..++...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 66666666666666666666666655444433
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=1.5e-14 Score=117.55 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=72.7
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQ 156 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 156 (476)
+.+...++.+|.++...|++++|+..|+++++.+|.+..++..+|.+|...|++++|+..|+++++++|+++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 011845 157 MEMQQENNLAARQLFERAVQASPKNRFAWHVWG 189 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 189 (476)
++...|++++|+..|+++++++|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 666666666666666666666666655444443
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=4.2e-14 Score=109.29 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCCh----hHHHHHH
Q 011845 216 PVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTE----SAARCLQ 291 (476)
Q Consensus 216 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~ 291 (476)
..++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+.. ....++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445667788888888888888888888888888888888888888888888888888888887766543 2244677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
++|.++...|++++|+++|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7888888888888888888888887775
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=5.9e-14 Score=125.90 Aligned_cols=167 Identities=14% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCCcHH------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch------hHHHH
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGGNEY------IYQTLALLEAKANRYEQARNLFRQATKCNPKSC------ASWIA 153 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~ 153 (476)
.+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+..|++++...+... .++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355555666666666666666655444332 122355555555555555555555555432211 13455
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTAN 233 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 233 (476)
+|.+|...|++++|+.+|+++++.....+ ...+....++.++|.++...|+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALH---------------------------DNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSS---------------------------CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcc---------------------------cchhHHHHHHHHHHHHHHHHhHHH
Confidence 55555555555555555555543100000 000111234455555555555555
Q ss_pred HHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCC-hhHHHHHHHHHHcc
Q 011845 234 LARKLFRRASEIDPRH------QPVWIAWGWMEWKEGN-LDTARELYERALSI 279 (476)
Q Consensus 234 ~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~ 279 (476)
+|+.++++++++.+.. +.++..+|.++...|+ +++|+.+|++++.+
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5555555555443221 4556666666666663 46666666666554
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=1.9e-13 Score=122.61 Aligned_cols=165 Identities=8% Similarity=-0.103 Sum_probs=119.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHH
Q 011845 187 VWGIFEANMGFIDKGKKLLKIGHAVNPRDPV------LLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWI 254 (476)
Q Consensus 187 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 254 (476)
..+..+...|++++|...+++++...+..+. .+..+|.++...+++++|+.+|++++...+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3455666677777777777777766655544 23346777777778888888888887754322 23678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHcc---C-CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc------HHHH
Q 011845 255 AWGWMEWKEGNLDTARELYERALSI---D-STTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS------YITW 324 (476)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~a~~~---~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 324 (476)
.+|.+|...|++++|+.+|+++++. . .+......++.++|.+|...|++++|+.++++++++.+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888888888853 1 2334445678888999999999999999999988875333 6788
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHhhh
Q 011845 325 MTWAQLEEDQGN-SVRAEEIRNLYFQQR 351 (476)
Q Consensus 325 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 351 (476)
..+|.++...|+ +++|...+++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 888888888884 588888877776643
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=4.1e-14 Score=111.14 Aligned_cols=103 Identities=10% Similarity=-0.025 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhccHHHHHHHHHHHHhcCCC
Q 011845 124 EAKANRYEQARNLFRQATKCNPK 146 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~ 146 (476)
+...|++++|+..|++++...|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555444
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.57 E-value=2.4e-15 Score=143.40 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=90.7
Q ss_pred HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHH
Q 011845 58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---------------EYIYQTLAL 122 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~ 122 (476)
..+++++|+..|+.++...|.....+..+|..+...|++++|+..|+++++..|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777778888888888888888888888888888887776 345555555
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845 123 LEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 123 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
+|..+|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555554443
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=1.5e-13 Score=105.70 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhcCC
Q 011845 130 YEQARNLFRQATKCNP 145 (476)
Q Consensus 130 ~~~A~~~~~~~~~~~p 145 (476)
+++|+.++++++...|
T Consensus 93 ~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 93 YDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3333333333333333
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.57 E-value=3.4e-14 Score=108.68 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN 128 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 128 (476)
++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 011845 129 RYEQARNLFRQATKCNPKS 147 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~ 147 (476)
++++|+..|+++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555543
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.57 E-value=2e-13 Score=105.01 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKY 229 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 229 (476)
++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 011845 230 STANLARKLFRRASEIDPRHQPVWIAWGWME 260 (476)
Q Consensus 230 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (476)
|++++|+..+++++...|+++.++..++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=7.9e-14 Score=109.50 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=74.0
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHH
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHG 85 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 85 (476)
.+|.++..++.+|.+++..|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.++.+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 445566666666666666666666666666666665 5566666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHH
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGG-----NEYIYQTLALLEA 125 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~ 125 (476)
+|.++...|++++|+..|++++...|+ +..+...+..+..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666554 4444444444433
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=3.8e-15 Score=142.01 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN---------------RFAWHVWGIFEA 193 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~ 193 (476)
++++|+..++.++...|.....+..+|..+...|++++|+..|++++...|.+ ..++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555555555555555555555555555544 344555555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHH
Q 011845 194 NMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTAR 270 (476)
Q Consensus 194 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 270 (476)
.+|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555544443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=5.1e-14 Score=107.70 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 011845 82 AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQ 161 (476)
Q Consensus 82 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 161 (476)
.++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHHcCCCcH
Q 011845 162 ENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~ 182 (476)
|++++|+..|+++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777766666543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=5.9e-14 Score=108.44 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-------hHHHHHH
Q 011845 83 WHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-------ASWIAWS 155 (476)
Q Consensus 83 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~la 155 (476)
+..+|..++..|++++|+..|+++++++|.++.++..+|.+|..+|++++|+..+++++++.|++. .++..+|
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444433321 1333344
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCC
Q 011845 156 QMEMQQENNLAARQLFERAVQASP 179 (476)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~a~~~~~ 179 (476)
.++...|++++|+..|++++...|
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc
Confidence 444444444444444444444433
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=2.1e-13 Score=103.66 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Q 011845 49 WQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKAN 128 (476)
Q Consensus 49 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 128 (476)
+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cHHHHHHHHHHHHhcCCCchhHHHHH
Q 011845 129 RYEQARNLFRQATKCNPKSCASWIAW 154 (476)
Q Consensus 129 ~~~~A~~~~~~~~~~~p~~~~~~~~l 154 (476)
++++|+..++++++.+|+++.++..+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44444444444444444444333333
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-13 Score=109.19 Aligned_cols=114 Identities=17% Similarity=0.066 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (476)
.+...++.+|..+...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444444444444444444444444444444443 44444555555555555555555555555555555555555
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM 157 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 157 (476)
|.++...|++++|+.+|++++..+|++..++..++.+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5555555555555555555555555554444444443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=4.4e-13 Score=101.90 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Q 011845 120 LALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFID 199 (476)
Q Consensus 120 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (476)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHhcCCCC
Q 011845 200 KGKKLLKIGHAVNPRD 215 (476)
Q Consensus 200 ~A~~~~~~~~~~~~~~ 215 (476)
+|+..+++++...|.+
T Consensus 90 ~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 90 EAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3333333333333333
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.54 E-value=2.1e-13 Score=115.04 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCC--
Q 011845 181 NRFAWHVWGIFEANMGFIDKGKKLLKIGHAV------NPRDPVLLQSLALLEYKYSTANLARKLFRRASEI---DPRH-- 249 (476)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~-- 249 (476)
...++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+.++++++.. .+++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3444444444444444444444444444441 1222334445555555555555555555555444 2211
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHccCC---CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 250 --QPVWIAWGWMEWKEGNLDTARELYERALSIDS---TTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 250 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
..++..+|.++...|++++|+.++++++...+ +......++..+|.++...|++++|..++++++.+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23445555555555555555555555554321 11112233445555566666666666666555543
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.53 E-value=1.1e-13 Score=112.14 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc------------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVA------------------DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK 108 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (476)
..+...|..++..|++++|+..|.+++.. +|.+..++..+|.++...|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555555555555555555555555554 444555666666666666666666666666666
Q ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHH
Q 011845 109 FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSC-ASWIAWSQMEMQ 160 (476)
Q Consensus 109 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~ 160 (476)
++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666655 344444444433
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=3.6e-14 Score=111.04 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC-------c-----HHHHHHHHHHHHHhCCHHHHHHHHHHhhcc-----
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKG-------H-----IAAWHGWAVLELRQGNIKKARQLLAKGLKF----- 109 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----- 109 (476)
..+...|..++..|++++|+..|+++++.+|+ + ..+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555566666666666666666666666555 2 225556666666666666666666666555
Q ss_pred --CCCcHHHH----HHHHHHHHHhccHHHHHHHHHHHHhcCCCchh
Q 011845 110 --CGGNEYIY----QTLALLEAKANRYEQARNLFRQATKCNPKSCA 149 (476)
Q Consensus 110 --~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 149 (476)
+|++..+| +++|.++..+|++++|+..|++++++.|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 55555555 56666666666666666666666655555543
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=3.7e-13 Score=113.43 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=129.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCCh
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEI------DPRHQPVWIAWGWMEWKEGNL 266 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~ 266 (476)
...|++++|...++......+....++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788999988555554433356789999999999999999999999999983 344567889999999999999
Q ss_pred hHHHHHHHHHHcc---CCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--Cc----HHHHHHHHHHHHHcCC
Q 011845 267 DTARELYERALSI---DSTTE-SAARCLQAWGVLEQRVGNLSAARRLFRSSLNINS--QS----YITWMTWAQLEEDQGN 336 (476)
Q Consensus 267 ~~A~~~~~~a~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~ 336 (476)
++|+.++++++.. .++++ ....++..+|.++...|++++|..++++++...+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999987 55333 4466788999999999999999999999997632 22 2356899999999999
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 011845 337 SVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 337 ~~~A~~~~~~~~~~~~~~ 354 (476)
+++|...+++++......
T Consensus 163 ~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999888755443
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=1.3e-13 Score=111.80 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc------------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKF------------------CGGNEYIYQTLALLEAKANRYEQARNLFRQA 140 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 140 (476)
....+...|..++..|++++|+..|.+++.. +|.+..++..+|.+|...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567888999999999999999999999988 5555667777777777777777777777777
Q ss_pred HhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Q 011845 141 TKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNR-FAWHVWGIFEAN 194 (476)
Q Consensus 141 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~ 194 (476)
+.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...+..+...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777776 445555554433
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-13 Score=106.59 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=82.3
Q ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHH
Q 011845 76 DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWI 152 (476)
Q Consensus 76 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 152 (476)
+|.+...++.+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++...|+++.++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45566677777777777777777777777777777765 666777777777777777777777777777777777777
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE 192 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 192 (476)
.+|.++...|++++|+..|++++..+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777777666666555543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=1.6e-13 Score=103.30 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=83.6
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcC--cHHHH
Q 011845 6 YWPEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKG--HIAAW 83 (476)
Q Consensus 6 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~ 83 (476)
++|+++.+++.+|.++...|++++|+..|+++++.. |.+..++..+|.++...|++++|+..|++++..+|. +..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 367777888888888888888888888888887776 677777777888888888888888888888777777 77777
Q ss_pred HHHHHHHHHh-CCHHHHHHHHHHhhccCCCc
Q 011845 84 HGWAVLELRQ-GNIKKARQLLAKGLKFCGGN 113 (476)
Q Consensus 84 ~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~ 113 (476)
..+|.++... |++++|+..+++++...|.+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 7777777777 77777777777777777654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.51 E-value=4.5e-13 Score=103.89 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWG 294 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~ 294 (476)
.++.+|..+...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++...|+++.....+..+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355667777777777777777777777777666 67777777777777777777777777777777755445566777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 011845 295 VLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQ 334 (476)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 334 (476)
.++...|++++|+..|++++...|++..+......+....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 7777777777777777777777777776655555444433
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=1.7e-13 Score=107.28 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------------hhHHHHHHHHHHHhccHHHHHHHHHHHHHc-------
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNPKS------------CASWIAWSQMEMQQENNLAARQLFERAVQA------- 177 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------- 177 (476)
+...|..+...|++++|+..|+++++++|++ ..+|.++|.++...|++++|+..|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444444444444444444444444444441 125555555555555555555555555554
Q ss_pred CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011845 178 SPKNRFAW----HVWGIFEANMGFIDKGKKLLKIGHAVNPRD 215 (476)
Q Consensus 178 ~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 215 (476)
+|++..+| +++|.++..+|++++|+..|++++++.|++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55555555 555555555555555555555555544443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.50 E-value=6.2e-13 Score=103.08 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHH
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGSQATQGENP---YIWQCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGW 86 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 86 (476)
.++.+|.+++..|++++|+..|++++... |.++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34555555555555555555555555554 4444 455555555555555555555555555555555 4555555
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTL 120 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (476)
|.++...|++++|+..|++++...|++..+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 5555555555555555555555555554444333
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=2.1e-14 Score=137.41 Aligned_cols=123 Identities=8% Similarity=0.004 Sum_probs=63.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 011845 152 IAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYST 231 (476)
Q Consensus 152 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 231 (476)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHH--HHHcCChhHHHHHHH
Q 011845 232 ANLARKLFRRASEIDPRHQPVWIAWGWM--EWKEGNLDTARELYE 274 (476)
Q Consensus 232 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 274 (476)
+++|+..|+++++..|++..++..++.+ +...|++++|+..++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555555555555555555544 445555555555555
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=1.3e-14 Score=138.76 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=87.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL 89 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 89 (476)
.+..+..+|..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.+..+++.+|.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777777777777777777766 66677777777777777777777777777777777777777777777
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhccHHHHHHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL--EAKANRYEQARNLFR 138 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 138 (476)
+..+|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777777777777766666666666 666677777777776
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.8e-11 Score=116.29 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=100.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
|...+..|..+...|+|++|++.|.++++.. +.........+..... ... ...++..+|.+|
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~-------~~~----------~~~al~~l~~~y 65 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKR-------RNE----------QETSILELGQLY 65 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHH-------HHH----------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHH-------hhh----------HHHHHHHHHHHH
Confidence 3445666777777777777777777777665 3221100000000000 000 011233444444
Q ss_pred HHhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CchhHHHHHHHHH
Q 011845 91 LRQGNIKKARQLLAKGLKFCGGNE------YIYQTLALLEAKANRYEQARNLFRQATKCNP------KSCASWIAWSQME 158 (476)
Q Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~ 158 (476)
...|++++|.+.+.+++...+... .+...++.++...|++++|+.++++++...+ ....++..+|.++
T Consensus 66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 66 VTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 444444444444444444322211 1223344444444555555555555444321 1133445555555
Q ss_pred HHhccHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHH
Q 011845 159 MQQENNLAARQLFERAVQA------SPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNP---RD----PVLLQSLALL 225 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~ 225 (476)
...|++++|...+++++.. .+....++..++.++...|++++|...+++++...+ .. ...+..+|.+
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 5555555555555555443 112234555555555555555555555555544321 11 1234455555
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q 011845 226 EYKYSTANLARKLFRRASE 244 (476)
Q Consensus 226 ~~~~~~~~~A~~~~~~~~~ 244 (476)
+...+++.+|..+|.+++.
T Consensus 226 ~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 5566666666666655554
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=2.7e-14 Score=130.52 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=76.3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 88 (476)
..+..+..+|..++..|+|++|+..|++++... |.+.. +...|++.++...+. ..+++.+|.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~ 238 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence 344556666666666777777777777766655 33321 111222222222211 136777888
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhccHHHH
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM-EMQQENNLAA 167 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~~~~~~A 167 (476)
++...|++++|+..|+++++.+|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888777777777777 3445666777
Q ss_pred HHHHHHHHHcCCCcH
Q 011845 168 RQLFERAVQASPKNR 182 (476)
Q Consensus 168 ~~~~~~a~~~~~~~~ 182 (476)
...|.+++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 778888877777654
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.47 E-value=3.7e-13 Score=101.26 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHH
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPR--HQPVWIAWGWM 259 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 259 (476)
..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++..|. +..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444444444444444444 44444444444
Q ss_pred HHHc-CChhHHHHHHHHHHccCC
Q 011845 260 EWKE-GNLDTARELYERALSIDS 281 (476)
Q Consensus 260 ~~~~-g~~~~A~~~~~~a~~~~~ 281 (476)
+... |++++|+.++++++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 4444 444444444444444443
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.47 E-value=6.9e-13 Score=102.90 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc-------HHHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN-------EYIYQTL 120 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 120 (476)
.+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444443333 3444444
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 011845 121 ALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQM 157 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 157 (476)
|.++...|++++|+..|++++...| ++..+..++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 4444444444444444444444444 23333333333
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.46 E-value=5.5e-13 Score=103.44 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=109.2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc-------H
Q 011845 8 PEDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGH-------I 80 (476)
Q Consensus 8 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~ 80 (476)
|..+..++.+|..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..+++++...|.+ .
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3456789999999999999999999999999988 8899999999999999999999999999999998877 8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
.++..+|.++...|++++|+..|++++...| ++..+..++.+....++
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988 68888888877765543
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.46 E-value=9.9e-14 Score=126.76 Aligned_cols=154 Identities=11% Similarity=0.026 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFE 192 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 192 (476)
....+..+|..+...|++++|+..|++++...|++. .+...|++.++...+. ..+++++|.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 344555555555556666666666666665555432 1122233333332221 12556666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCChhHHHH
Q 011845 193 ANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWME-WKEGNLDTARE 271 (476)
Q Consensus 193 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~ 271 (476)
...|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666655552 33445555555
Q ss_pred HHHHHHccCCCC
Q 011845 272 LYERALSIDSTT 283 (476)
Q Consensus 272 ~~~~a~~~~~~~ 283 (476)
.|.+++...|.+
T Consensus 321 ~~~~~l~~~p~~ 332 (338)
T 2if4_A 321 MYKGIFKGKDEG 332 (338)
T ss_dssp ------------
T ss_pred HHHHhhCCCCCC
Confidence 666666555554
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=7.9e-12 Score=118.77 Aligned_cols=164 Identities=13% Similarity=0.003 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------HHHHHHHHHHHHhCCHHHHHHHHHHhhccC------CCcHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI------AAWHGWAVLELRQGNIKKARQLLAKGLKFC------GGNEY 115 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~ 115 (476)
++..+|.+|...|++++|++.+.+++...+... .+...++.++...|++++|+.++++++... +....
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 456677777777777777777777765433321 233456666667777777777777776542 22355
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC---CCc----H
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCN------PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS---PKN----R 182 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~----~ 182 (476)
++..+|.+|...|++++|+..+++++... +....++..++.+|...|++++|...+++++... +.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 67778888888888888888887776542 2334577778888888888888888888777653 222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011845 183 FAWHVWGIFEANMGFIDKGKKLLKIGHAV 211 (476)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 211 (476)
..+..+|.++...|++++|...|.+++..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666777777788888888888777653
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.44 E-value=1.9e-12 Score=119.50 Aligned_cols=121 Identities=12% Similarity=-0.030 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh----------------cCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTV----------------ADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC 110 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 110 (476)
..+..+|..+...|++++|+..|++++. .+|.+..++..+|.++...|++++|+..++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4566777777777788888877777776 344444555555555555555555555555555555
Q ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845 111 GGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA 167 (476)
Q Consensus 111 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 167 (476)
|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555444444
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=3.1e-13 Score=102.83 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHhhc---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHH
Q 011845 59 LGNIGKARELFDASTVA---DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARN 135 (476)
Q Consensus 59 ~g~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 135 (476)
.|++++|+..|++++.. +|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555566655555 355555555566666666666666666666655555555555555666555666666666
Q ss_pred HHHHHHhcCCCchhH
Q 011845 136 LFRQATKCNPKSCAS 150 (476)
Q Consensus 136 ~~~~~~~~~p~~~~~ 150 (476)
.+++++...|+++.+
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 666555555555443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=2.1e-12 Score=119.22 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
...+..+|..+...|++++|+..|+++++..+..+ +...........|.+..++..+|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999987332110 001122222334444455555555555
Q ss_pred HhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011845 160 QQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLAR 236 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 236 (476)
..|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555444443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.41 E-value=4.3e-13 Score=102.03 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=64.8
Q ss_pred hCCHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHH
Q 011845 93 QGNIKKARQLLAKGLKF---CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQ 169 (476)
Q Consensus 93 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 169 (476)
.|++++|+..|+++++. +|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56677777777777777 466667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCCcHHHH
Q 011845 170 LFERAVQASPKNRFAW 185 (476)
Q Consensus 170 ~~~~a~~~~~~~~~~~ 185 (476)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777766544
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=1.6e-12 Score=101.44 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=57.9
Q ss_pred HcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845 58 KLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLF 137 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 137 (476)
+.+.+++|+..++++++.+|+++++|+.+|.++...++++.+...+ +.+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHHHH
Confidence 4556666777777777667777777766666666666543221111 0134555555
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHcCCCcH
Q 011845 138 RQATKCNPKSCASWIAWSQMEMQQ-----------ENNLAARQLFERAVQASPKNR 182 (476)
Q Consensus 138 ~~~~~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~ 182 (476)
+++++++|++..+|+.+|.+|... |++++|+.+|+++++++|++.
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 555555555555555555555444 366666666666666666654
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=2.1e-12 Score=100.75 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=66.0
Q ss_pred HhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Q 011845 126 KANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENN----------LAARQLFERAVQASPKNRFAWHVWGIFEANM 195 (476)
Q Consensus 126 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 195 (476)
+.+.+++|+..++++++.+|+++++|..+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777776654 5888888888888888888888888888776
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCCH
Q 011845 196 G-----------FIDKGKKLLKIGHAVNPRDP 216 (476)
Q Consensus 196 ~-----------~~~~A~~~~~~~~~~~~~~~ 216 (476)
| ++++|+.+|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 56666666666666666653
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=6.5e-12 Score=101.34 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHccC---CCChhHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIAWGWMEWKEGNLDTARELYERALSID---STTESAAR 288 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~ 288 (476)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++... .+......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34445555555555555555555544432211 2345556666666666666666666665542 12222234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
.+..+|.++...|++++|..++++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=8.3e-12 Score=100.72 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcH------HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHI------AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EY 115 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~ 115 (476)
++..+|.++...|++++|+..+++++...+... .++..+|.++...|++++|+..+++++...+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444444444555555554444443322111 234444445555555555555554444432211 23
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNPK------SCASWIAWSQMEMQQENNLAARQLFERAVQ 176 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 176 (476)
++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444455555555555555444433211 122344444444444444444444444443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.20 E-value=2e-10 Score=86.74 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 65 ARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 65 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred C
Q 011845 145 P 145 (476)
Q Consensus 145 p 145 (476)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.5e-11 Score=91.08 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHHHHH
Q 011845 182 RFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH------QPVWIA 255 (476)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 255 (476)
...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++.+|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHcCChhHHHHHH
Q 011845 256 WGWMEWKEGNLDTARELY 273 (476)
Q Consensus 256 l~~~~~~~g~~~~A~~~~ 273 (476)
+|.++...|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555555555554443
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.4e-11 Score=92.40 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCc------HHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGN------EYIYQTL 120 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l 120 (476)
..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++ ..++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3444444444445555555555555544444444445555555555555555555555555544444 4444455
Q ss_pred HHHHHHhccHHHHHHH
Q 011845 121 ALLEAKANRYEQARNL 136 (476)
Q Consensus 121 a~~~~~~g~~~~A~~~ 136 (476)
|.++...|+++.|+..
T Consensus 85 ~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHhHhhhHhH
Confidence 5555554444444433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.18 E-value=2.6e-10 Score=86.16 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=62.8
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHc
Q 011845 98 KARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQA 177 (476)
Q Consensus 98 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 177 (476)
+|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCC
Q 011845 178 SPK 180 (476)
Q Consensus 178 ~~~ 180 (476)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=2.4e-10 Score=82.11 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLE 124 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 124 (476)
.+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33333444444444444444444444333333333344444444444444444444444433333333333333333
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=3.7e-10 Score=81.07 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 011845 80 IAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEM 159 (476)
Q Consensus 80 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 159 (476)
..+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred H
Q 011845 160 Q 160 (476)
Q Consensus 160 ~ 160 (476)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.07 E-value=1.4e-09 Score=103.18 Aligned_cols=128 Identities=9% Similarity=-0.065 Sum_probs=100.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHH
Q 011845 222 LALLEYKYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAAR 288 (476)
Q Consensus 222 la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~ 288 (476)
.+..+..+|++++|+.++++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|+++....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344466788888898888888765 34444 56778889999999999999999988875 688888888
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.+.++|.+|..+|++++|..+|++++++ .|+++ .+..+++.++..+|.+.+|..+|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998875 35554 4556777888888888888877776643
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.06 E-value=1e-09 Score=104.17 Aligned_cols=130 Identities=11% Similarity=0.041 Sum_probs=111.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---H
Q 011845 188 WGIFEANMGFIDKGKKLLKIGHAV-----NPRDP---VLLQSLALLEYKYSTANLARKLFRRASEI-----DPRHQ---P 251 (476)
Q Consensus 188 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~ 251 (476)
.+..+..+|++++|+..+++++.+ .|+++ .++.++|.+|..+|++++|+.++++++.+ .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567889999999999999874 45555 46889999999999999999999999875 34554 5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 011845 252 VWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN 317 (476)
Q Consensus 252 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 317 (476)
.+.++|.+|..+|++++|+.+|++++.+ .|+++....+...++.++..++.+++|...|.++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999875 79999999999999999999999999999999986543
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.05 E-value=5.7e-10 Score=81.74 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCC
Q 011845 212 NPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDS 281 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 281 (476)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3555555555555555555555555555555555555555555555555555555555555555555443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.04 E-value=1.3e-09 Score=79.76 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=29.7
Q ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 77 KGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 77 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
|+++.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|++++++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444444444444444444444444444444444444444444444444444444444444443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.04 E-value=5.1e-10 Score=81.85 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=28.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHH-HHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIA-AWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI 116 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 116 (476)
|.++...|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|+++++.+|++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 44444444444444444444444444444 44444444444444444444444444444444433
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=1e-08 Score=79.90 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=36.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 011845 154 WSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEAN----MGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYK- 228 (476)
Q Consensus 154 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~- 228 (476)
+|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+.+.+|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 444444444444444444444433 233444444444444 34444444444444333 233444444444444
Q ss_pred ---cCCHHHHHHHHHHHhc
Q 011845 229 ---YSTANLARKLFRRASE 244 (476)
Q Consensus 229 ---~~~~~~A~~~~~~~~~ 244 (476)
.+++++|+.+|+++.+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 3444444444444433
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=7.8e-10 Score=80.85 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCGGNEY-IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQEN 163 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 163 (476)
..|.++...|++++|+..|+++++.+|.+.. ++..+|.++...|++++|+..|+++++.+|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4555666666666666666666666666666 66666666666666666666666666666666555432 44
Q ss_pred HHHHHHHHHHHHHcCCC
Q 011845 164 NLAARQLFERAVQASPK 180 (476)
Q Consensus 164 ~~~A~~~~~~a~~~~~~ 180 (476)
+.+++..|+++...+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 45555555555444443
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.01 E-value=2.2e-08 Score=85.52 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=71.7
Q ss_pred cCCCcHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 011845 177 ASPKNRFAWHVWGIFEAN---M--G------FIDKGKKLLKIGHAVNPR--DPVLLQSLALLEYKY-----STANLARKL 238 (476)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~---~--~------~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~ 238 (476)
.+|++++.++..|.+... . | ....|...++++++++|+ +..++..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 345555555555444322 1 2 245677777777777777 455777777777774 777777777
Q ss_pred HHHHhccCCCC-HHHHHHHHHHHHH-cCChhHHHHHHHHHHccCCC
Q 011845 239 FRRASEIDPRH-QPVWIAWGWMEWK-EGNLDTARELYERALSIDST 282 (476)
Q Consensus 239 ~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~ 282 (476)
|+++++++|+. ...++.+|..++. .|++++|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 77777777764 7777777777766 47777777777777777665
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.01 E-value=1.3e-08 Score=86.90 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=82.7
Q ss_pred hcCCCCHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHc-----CChhHHHH
Q 011845 210 AVNPRDPVLLQSLALLEYK-----YST------ANLARKLFRRASEIDPR--HQPVWIAWGWMEWKE-----GNLDTARE 271 (476)
Q Consensus 210 ~~~~~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~ 271 (476)
+.+|+++..++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4567777777766655532 132 46788889999999998 667889999988884 89999999
Q ss_pred HHHHHHccCCCC-hhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCc
Q 011845 272 LYERALSIDSTT-ESAARCLQAWGVLEQR-VGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 272 ~~~~a~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 320 (476)
+|+++++++|+. ... ++.+|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~---~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDH---HITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHH---HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999865 544 4455888877 488999999999999887663
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=9.9e-09 Score=80.01 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH----hccHHHHHHH
Q 011845 61 NIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAK----ANRYEQARNL 136 (476)
Q Consensus 61 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 136 (476)
++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45555555555554432 2222 555555555555555555555543 345555555555555 4555555555
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHH----hccHHHHHHHHHHHHHc
Q 011845 137 FRQATKCNPKSCASWIAWSQMEMQ----QENNLAARQLFERAVQA 177 (476)
Q Consensus 137 ~~~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~ 177 (476)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555543 344555555555555 45555555555555444
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=2.7e-08 Score=88.90 Aligned_cols=148 Identities=8% Similarity=-0.018 Sum_probs=71.7
Q ss_pred CCChHHH--HHHHHHHHHcCC---HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHH
Q 011845 43 GENPYIW--QCWAVLENKLGN---IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIY 117 (476)
Q Consensus 43 ~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 117 (476)
|.++.+| +..|..+...++ ..+|+.+|+++++.+|++..++..++.++...... .|......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~ 257 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQL 257 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhH
Confidence 5555444 334455554443 46777777777777777777777666666411000 00000000
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC
Q 011845 118 QTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGF 197 (476)
Q Consensus 118 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 197 (476)
.....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|+
T Consensus 258 ----------~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 258 ----------AALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM 325 (372)
T ss_dssp ----------HHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC
Confidence 000111110 0122334555555555555555555555555555555555543 3444555555555555
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 011845 198 IDKGKKLLKIGHAVNPRD 215 (476)
Q Consensus 198 ~~~A~~~~~~~~~~~~~~ 215 (476)
+++|++.|.+++.++|..
T Consensus 326 ~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 326 NREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 555555555555555543
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.97 E-value=1.6e-07 Score=89.97 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=72.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCC---------HHHHHHHHHHHhhcC-cCcHHHHHHH
Q 011845 17 LGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGN---------IGKARELFDASTVAD-KGHIAAWHGW 86 (476)
Q Consensus 17 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~~-p~~~~~~~~l 86 (476)
....+.+.|++++|+.+|+++.+.+-..+...|..+..++...+. .++|.++|+++.... +.+..+|..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334445555555555555555444333444444444444433222 344555555444321 1133444444
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENN 164 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~ 164 (476)
...+.+.|++++|..+|+++.+.. ..+..+|..+...|.+.|+.++|.++|+++.+.. ..+...|..+...+.+.|+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 555555555555555555444331 2234444444445555555555555555544432 11333444444455555555
Q ss_pred HHHHHHHHHHHH
Q 011845 165 LAARQLFERAVQ 176 (476)
Q Consensus 165 ~~A~~~~~~a~~ 176 (476)
++|..++++..+
T Consensus 192 d~A~~ll~~Mr~ 203 (501)
T 4g26_A 192 DKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.93 E-value=5.4e-08 Score=86.96 Aligned_cols=151 Identities=12% Similarity=0.011 Sum_probs=101.3
Q ss_pred CcCcHHHHH--HHHHHHHHhCC---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH
Q 011845 76 DKGHIAAWH--GWAVLELRQGN---IKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS 150 (476)
Q Consensus 76 ~p~~~~~~~--~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 150 (476)
.|.++.+|- ..|..+...++ ..+|+.+|+++++++|++..++..++.+|... ....|.....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~~~~ 256 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPLDEKQ 256 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCCchhh
Confidence 444444332 34444444333 35666666666666666666666666655410 0001111110
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 011845 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYS 230 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 230 (476)
.. ....+... ..++...|.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|
T Consensus 257 ~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 257 LA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKG 324 (372)
T ss_dssp HH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTT
T ss_pred HH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCC
Confidence 00 11222221 123456799999999999999999999999999999999997 5778899999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHH
Q 011845 231 TANLARKLFRRASEIDPRHQP 251 (476)
Q Consensus 231 ~~~~A~~~~~~~~~~~~~~~~ 251 (476)
++++|++.|.+++.++|..+.
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999998753
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.88 E-value=2.8e-07 Score=88.21 Aligned_cols=181 Identities=11% Similarity=-0.013 Sum_probs=129.5
Q ss_pred ChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-cCcHHHHHHHHHHHHHhC---------CHHHHHHHHHHhhccC-CC
Q 011845 45 NPY-IWQCWAVLENKLGNIGKARELFDASTVAD-KGHIAAWHGWAVLELRQG---------NIKKARQLLAKGLKFC-GG 112 (476)
Q Consensus 45 ~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~-p~ 112 (476)
.++ .+......+.+.|+.++|+.+|+++.... +.+..+|..+..++...+ ..++|.++|+++.... +.
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 344 35556677888999999999999887643 235566766666665443 3678888888877553 34
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWSQMEMQQENNLAARQLFERAVQAS-PKNRFAWHVWGI 190 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 190 (476)
+..+|..+...|.+.|++++|..+|+++.+.. ..+..+|..+...|.+.|+.++|..+|++..+.. ..+...|..+..
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 67788888888888888888888888887653 2356778888888888888888888888887653 235567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 011845 191 FEANMGFIDKGKKLLKIGHAV--NPRDPVLLQSLALLE 226 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 226 (476)
.+.+.|+.++|.++++++.+. .| +..++..+...+
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F 220 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWF 220 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHH
Confidence 888888888888888887654 33 344444443333
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.85 E-value=5.4e-08 Score=69.41 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 212 NPRDPVLLQSLALLEYKYST---ANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 212 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46667777777777665544 567777777777777777777777777777777777777777777777766443
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=1.4e-07 Score=72.75 Aligned_cols=85 Identities=7% Similarity=-0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYS---TANLARKLFRRASEID-P-RHQPVWIAWGWMEWKEGNLDTARELYER 275 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (476)
+.+.|.+.+..++.+..+.+.+|+++.+.+ +.++++.+++.+++.+ | +..+.++.+|..+++.|+|++|+.++++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334444444444444445555555554444 3334555555544444 3 2344445555555555555555555555
Q ss_pred HHccCCCChh
Q 011845 276 ALSIDSTTES 285 (476)
Q Consensus 276 a~~~~~~~~~ 285 (476)
+++++|++..
T Consensus 97 lL~ieP~n~Q 106 (152)
T 1pc2_A 97 LLQTEPQNNQ 106 (152)
T ss_dssp HHHHCTTCHH
T ss_pred HHhcCCCCHH
Confidence 5555554433
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.72 E-value=1.2e-07 Score=67.60 Aligned_cols=70 Identities=11% Similarity=-0.122 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCC
Q 011845 43 GENPYIWQCWAVLENKLGN---IGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGG 112 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (476)
|.++.++..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|++++|+..++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444445555544443333 344555555555555555555555555555555555555555555444444
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=3.1e-07 Score=70.78 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhc---cHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011845 132 QARNLFRQATKCNPKSCASWIAWSQMEMQQE---NNLAARQLFERAVQAS-P-KNRFAWHVWGIFEANMGFIDKGKKLLK 206 (476)
Q Consensus 132 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 206 (476)
.+.+.|.+.+..++.+.++.+.+|.++.+.+ +.++++.+++.+++.+ | .+.+.++.+|..+.+.|+|++|+.+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344444444444444445555555554444 3344555555544444 3 234444444544555555555555555
Q ss_pred HHHhcCCCCHHH
Q 011845 207 IGHAVNPRDPVL 218 (476)
Q Consensus 207 ~~~~~~~~~~~~ 218 (476)
++++..|++..+
T Consensus 96 ~lL~ieP~n~QA 107 (152)
T 1pc2_A 96 GLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHhcCCCCHHH
Confidence 555555544443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.62 E-value=2.4e-07 Score=86.54 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=80.5
Q ss_pred HcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHH
Q 011845 228 KYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWG 294 (476)
Q Consensus 228 ~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~ 294 (476)
..|++++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+++.....+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999998874 45554 56778999999999999999999999875 788888888999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhh-----CCCcHHHH
Q 011845 295 VLEQRVGNLSAARRLFRSSLNI-----NSQSYITW 324 (476)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 324 (476)
.+|..+|++++|..+|++++++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999876 46666543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.59 E-value=4.2e-07 Score=85.03 Aligned_cols=109 Identities=10% Similarity=-0.049 Sum_probs=84.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHH
Q 011845 224 LLEYKYSTANLARKLFRRASEI-----DPRHQ---PVWIAWGWMEWKEGNLDTARELYERALSI-----DSTTESAARCL 290 (476)
Q Consensus 224 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~ 290 (476)
.-+..+|++++|+..+++++++ .|+++ .++.++|.+|..+|++++|+.++++++.+ .|+++.....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455778899999999988865 34444 56778899999999999999999998865 68888888889
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcHH---HHHHHHHHHH
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSYI---TWMTWAQLEE 332 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~ 332 (476)
.++|.+|...|++++|..+|++++++ .|+++. ++.+++.+..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 466654 3344554443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.56 E-value=5.2e-07 Score=66.14 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC----ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHH
Q 011845 250 QPVWIAWGWMEWKEGNLDTARELYERALSIDST----TESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWM 325 (476)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 325 (476)
+.-.+.+|..++..|+|..|+.+|+.+++..+. ......++..+|.++.+.|+++.|+.++++++.+.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 455677888888888888888888888776321 1223556788899999999999999999999999999888877
Q ss_pred HHH
Q 011845 326 TWA 328 (476)
Q Consensus 326 ~l~ 328 (476)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.55 E-value=4.8e-07 Score=66.36 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=54.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHH
Q 011845 10 DGRPYVALGKVLSKQSKVAEARAIYAKGSQATQ------GENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAW 83 (476)
Q Consensus 10 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 83 (476)
++.-++.+|..++..|+|..|+..|+.+++..+ ...+.++..+|.++.+.|+++.|+..+++++..+|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 345567788888888888888888888776431 23456677777777777777777777777777777776665
Q ss_pred HHHH
Q 011845 84 HGWA 87 (476)
Q Consensus 84 ~~la 87 (476)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.50 E-value=6.1e-07 Score=83.75 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=80.9
Q ss_pred HcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHHHHHH
Q 011845 262 KEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITWMTWA 328 (476)
Q Consensus 262 ~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~ 328 (476)
..|+|++|+..+++++.+ .|+++....++.++|.+|..+|++++|..++++++++ .|+++ ..+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468999999999999874 7899999999999999999999999999999999976 34444 5789999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 329 QLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 329 ~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
.+|..+|++++|..++++++.....
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988875443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.49 E-value=2.6e-06 Score=79.70 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=84.0
Q ss_pred HHHHHcCChhHHHHHHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCcH---HHH
Q 011845 258 WMEWKEGNLDTARELYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-----NSQSY---ITW 324 (476)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~ 324 (476)
.-+...|++++|+..+++++.+ .|+++....++.++|.+|..+|++++|+.++++++.+ .|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999975 6888888999999999999999999999999999976 34444 578
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhhhhh
Q 011845 325 MTWAQLEEDQGNSVRAEEIRNLYFQQRTEV 354 (476)
Q Consensus 325 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 354 (476)
+++|.+|..+|++++|..++++++......
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998855443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.48 E-value=2.1e-06 Score=64.78 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=77.3
Q ss_pred ccCCCCchhHHHHHHHHHhcCCH------HHHHHHHHHhhccCCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011845 5 DYWPEDGRPYVALGKVLSKQSKV------AEARAIYAKGSQATQGEN-------PYIWQCWAVLENKLGNIGKARELFDA 71 (476)
Q Consensus 5 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~ 71 (476)
-+.|+|++.|..........|+. ++-+++|++++...||.. ..+|..+|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35678888888888877777887 777788888877664432 2344555544 445777777777777
Q ss_pred HhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHH
Q 011845 72 STVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYI 116 (476)
Q Consensus 72 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 116 (476)
++..+.....+|...|....++|+...|.+++.+++...|...+.
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 776666667777777777777777777777777777777765543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.35 E-value=2.1e-05 Score=59.33 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845 162 ENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPR 214 (476)
Q Consensus 162 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 214 (476)
++.++|...|+.++......+.+|...|....++|+...|..++.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44444444444444443333444444444444444444444444444444443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.25 E-value=1.7e-05 Score=58.70 Aligned_cols=85 Identities=7% Similarity=-0.042 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 011845 201 GKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANL---ARKLFRRASEID-P-RHQPVWIAWGWMEWKEGNLDTARELYER 275 (476)
Q Consensus 201 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 275 (476)
+...|.+....++.+..+.+.+|+++....+... ++.+++..+... | ..-+.++.+|..+++.|+|++|+.+++.
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334444444444444555555555544444433 444555444443 2 2234444455555555555555555555
Q ss_pred HHccCCCChh
Q 011845 276 ALSIDSTTES 285 (476)
Q Consensus 276 a~~~~~~~~~ 285 (476)
+++..|++..
T Consensus 100 lL~~eP~n~Q 109 (126)
T 1nzn_A 100 LLQTEPQNNQ 109 (126)
T ss_dssp HHHHCTTCHH
T ss_pred HHHhCCCCHH
Confidence 5555555443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.19 E-value=2.4e-05 Score=57.86 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcC-c-CcHHHHHHHHHHHHHhCCHHHHHH
Q 011845 27 VAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGK---ARELFDASTVAD-K-GHIAAWHGWAVLELRQGNIKKARQ 101 (476)
Q Consensus 27 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~ 101 (476)
...+...|.+....+ +.+..+.+.+|.++.+..+... ++.+++.++..+ | ..-+.++.+|..+++.|+|.+|+.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455555554444 4566666666666666665554 666666666654 3 344566666666666666666666
Q ss_pred HHHHhhccCCCcHHHHHH
Q 011845 102 LLAKGLKFCGGNEYIYQT 119 (476)
Q Consensus 102 ~~~~~~~~~p~~~~~~~~ 119 (476)
+++.+++..|++..+...
T Consensus 96 ~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHH
Confidence 666666666666555433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.88 E-value=6e-05 Score=58.38 Aligned_cols=61 Identities=10% Similarity=-0.122 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---------HHHHHHHHHHHHHhCCHHHHHHHHHHhhc
Q 011845 48 IWQCWAVLENKLGNIGKARELFDASTVADKGH---------IAAWHGWAVLELRQGNIKKARQLLAKGLK 108 (476)
Q Consensus 48 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 108 (476)
+++.-...+...|.|+.|+-....++....++ ..++..+|.+++..++|..|...|+++++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33444445555555555555555544322111 12445556666666666666666655543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.87 E-value=0.00021 Score=55.41 Aligned_cols=134 Identities=5% Similarity=-0.100 Sum_probs=82.7
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---cC
Q 011845 11 GRPYVALGKVLSKQSKVAEARAIYAKGSQATQGEN---------PYIWQCWAVLENKLGNIGKARELFDASTVAD---KG 78 (476)
Q Consensus 11 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~ 78 (476)
-.+++.-...++..|.|+.|+-....++... ..+ ..++..+|..++..|+|..|...|+++++.. +.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777888999999999999999877543 222 2377889999999999999999999997532 22
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 011845 79 HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQME 158 (476)
Q Consensus 79 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 158 (476)
.......++. ...... .... +.+.++.+.++.||...+++++|+..++.+-.. ...+.+...+|.+|
T Consensus 99 ~~s~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CCCccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 2211111110 000000 0111 345567777888888888888888777654222 23455666666654
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.77 E-value=0.034 Score=54.16 Aligned_cols=310 Identities=10% Similarity=-0.029 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCcCcHHHHH---HHHH
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLG--NIGKARELFDASTVADKGHIAAWH---GWAV 88 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~---~la~ 88 (476)
.+.-+...+..|++..+......+ ... |- ..+.....+....+ ...+ +...+...|+.+..-. ..-.
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l-~~~-pL--~~yl~y~~l~~~l~~~~~~e----v~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGL-KDY-PL--YPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGG-TTS-TT--HHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhh-cCC-Cc--HHHHHHHHHHhCcccCCHHH----HHHHHHHCCCChhHHHHHHHHHH
Confidence 456667778889998777665543 222 33 23333333333333 3443 3344455676664433 2333
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc------
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQE------ 162 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~------ 162 (476)
.+.+.+++..-+.++.. .|.+....+..+......|+..+|.....++.......+.....+...+...|
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH
Confidence 34457788777665543 37888888888888999999888888888877666555554444444444333
Q ss_pred ------------cHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 011845 163 ------------NNLAARQLFERAVQASPKNRFAW-HVWGIFEANMGFIDKGKKLLKIGHAVNPRDP-VLLQSLALLEYK 228 (476)
Q Consensus 163 ------------~~~~A~~~~~~a~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~ 228 (476)
+...|..+... -|.+...+ ..+..++ .+.......... ..+... .....++.....
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~----l~~~~~~~a~~~~al~---~~p~~~~~~~~~---~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAIISLA---NNPNTVLTFART---TGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHHHHH---HCGGGHHHHHHH---SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh----CCHHHHHHHHHHHHHH---hChHhHHHHHhc---cCCChhhHHHHHHHHHHHH
Confidence 33333222111 11111000 0011110 111111111100 011111 112222333333
Q ss_pred cCCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHH
Q 011845 229 YSTANLARKLFRRASEIDPRHQP----VWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLS 304 (476)
Q Consensus 229 ~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (476)
..+.+.|...+.......+-+.. .+..++.-+...+...++...+.+......++ ...+.. +......|+++
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~---~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERR---VRMALGTGDRR 302 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHH---HHHHHHHTCHH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHH---HHHHHHCCCHH
Confidence 44667777777665443322222 11222222233343456666666654433322 222222 22334567777
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 305 AARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 305 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.|..+|..+-..........+.+|+.+...|+.++|..+|+.+..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777765443334556677777777777777777777776654
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.60 E-value=0.0017 Score=48.11 Aligned_cols=81 Identities=6% Similarity=-0.058 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNI---GKARELFDASTVADKG-HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (476)
..++.+.+.+|.++.+..+. .+++.+++.++..+|. .-+.++.+|..+++.|+|.+|.++.+.+++..|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45778888888888887654 4688888888887774 4678888888899999999999999999998888877665
Q ss_pred HHHHH
Q 011845 119 TLALL 123 (476)
Q Consensus 119 ~la~~ 123 (476)
....+
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.59 E-value=0.0032 Score=47.38 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 214 RDPVLLQSLALLEYKYSTAN---LARKLFRRASEIDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 214 ~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
.++.+.+++|+++....+.. +++.+++..+...|. .-+.++.+|..+++.|+|++|+.+.+.+++..|++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 35566666666666655443 466666666665553 33566666666666666666666666666666666554
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.57 E-value=0.0011 Score=49.20 Aligned_cols=72 Identities=10% Similarity=0.013 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH
Q 011845 215 DPVLLQSLALLEYKYSTA---NLARKLFRRASEIDPR-HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA 286 (476)
Q Consensus 215 ~~~~~~~la~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 286 (476)
++.+.+++|+++.+..+. .+++.+++..++..|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|++..+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 456666777777666544 3566677766666663 34666777777777777777777777777777777554
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.43 E-value=0.0039 Score=46.90 Aligned_cols=78 Identities=6% Similarity=-0.084 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHH
Q 011845 43 GENPYIWQCWAVLENKLGNI---GKARELFDASTVADKG-HIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQ 118 (476)
Q Consensus 43 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 118 (476)
..++.+.+.+|.++.+..+. .+++.+++.++...|. .-+.++.+|..+++.|+|.+|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45677788888888776654 4677788887777663 4577778888888888888888888888888887776554
Q ss_pred HH
Q 011845 119 TL 120 (476)
Q Consensus 119 ~l 120 (476)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.26 E-value=0.16 Score=49.42 Aligned_cols=144 Identities=9% Similarity=-0.072 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011845 198 IDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERAL 277 (476)
Q Consensus 198 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 277 (476)
..++...+.+...... +.......+......|+++.|...|..+-......+...+-+|.++...|+.++|..+|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344444444433222 222222333333445666666666655444333344555556666666666666666665554
Q ss_pred ccC-----------------------CCChh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 011845 278 SID-----------------------STTES--AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEE 332 (476)
Q Consensus 278 ~~~-----------------------~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 332 (476)
... +.... ...-....+..+...|....|...+...+... +..-...++.+..
T Consensus 347 ~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~ 424 (618)
T 1qsa_A 347 QQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAF 424 (618)
T ss_dssp TSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 310 00000 01112344667788899999988888777542 2344456777778
Q ss_pred HcCChHHHHHHH
Q 011845 333 DQGNSVRAEEIR 344 (476)
Q Consensus 333 ~~g~~~~A~~~~ 344 (476)
..|.+..++...
T Consensus 425 ~~~~~~~~v~~~ 436 (618)
T 1qsa_A 425 NNQWWDLSVQAT 436 (618)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCChHHHHHHH
Confidence 888888776543
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.24 E-value=0.017 Score=52.62 Aligned_cols=166 Identities=10% Similarity=-0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH-----HHHHHHHHHH-hccHHHHHHHHHHHHHcCCCcHH----
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS-----WIAWSQMEMQ-QENNLAARQLFERAVQASPKNRF---- 183 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~---- 183 (476)
..+...+|.+|...|++++-.+++.......+.-+.+ ...+...+.. .+..+.-++++..+++...+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999998888888765554433332 2233333322 23344445555555543222111
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCH--
Q 011845 184 --AWHVWGIFEANMGFIDKGKKLLKIGHAVNPR--D----PVLLQSLALLEYKYSTANLARKLFRRASEID---PRHQ-- 250 (476)
Q Consensus 184 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~-- 250 (476)
+-..++.+|...|+|.+|...+.+....... + .+++..-..+|...+++.++...+.++.... +.+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2236677777777777777777766653221 1 2345555666777777777777777765432 1222
Q ss_pred --HHHHHHHHHHH-HcCChhHHHHHHHHHHcc
Q 011845 251 --PVWIAWGWMEW-KEGNLDTARELYERALSI 279 (476)
Q Consensus 251 --~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 279 (476)
.+...-|.++. ..++|..|...|-.++..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 23344566666 677777777777776543
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.22 E-value=0.045 Score=42.17 Aligned_cols=158 Identities=13% Similarity=-0.018 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhc--c---------------
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLK--F--------------- 109 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~--------------- 109 (476)
+.-..++.+++-.|.+..++-++... +...+.+..+.|+.+.+++..|+..++..+. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 44444555555555555555554432 3344444555555555666666655555552 1
Q ss_pred CCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhH------------------------------HHHHHHHH
Q 011845 110 CGGNEY-IYQTLALLEAKANRYEQARNLFRQATKCNPKSCAS------------------------------WIAWSQME 158 (476)
Q Consensus 110 ~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------------------------~~~la~~~ 158 (476)
+|.+.+ .+..+|.++...|+.++|+.++.......|-.+.+ +......+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lH 188 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFH 188 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHH
Confidence 122222 34455566666666666666665555443322111 11111111
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFA-WHVWGIFEANMGFIDKGKKLLKIGHAVNPR 214 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 214 (476)
..... ...++-...-|.-... ....+..+...|-.++...+|...-..+|.
T Consensus 189 e~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 189 ESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 11111 3344444455654332 234566777788888888888877777764
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.18 E-value=0.046 Score=55.84 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 159 MQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIG 208 (476)
Q Consensus 159 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 208 (476)
...|++++|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 445555555554321 234455555666666666666555555543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0065 Score=60.18 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=85.0
Q ss_pred HcCC-HHHHHHHHHHHhhcCcCcHHHHHHHHHHHH--H-hCCHHHHHHHHHHhhcc--------CCCc----------HH
Q 011845 58 KLGN-IGKARELFDASTVADKGHIAAWHGWAVLEL--R-QGNIKKARQLLAKGLKF--------CGGN----------EY 115 (476)
Q Consensus 58 ~~g~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~~~~~--------~p~~----------~~ 115 (476)
..|+ ++.|+..+++....+|.....+ ..+.+.. . ..+--+|+.++.+.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 6889999999998888654322 2222221 1 23455677777776632 2222 23
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 116 IYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 116 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
.+..-+..+...|+++-|+++.++++...|.....|..|+.+|...|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556777888999999999999999999999999999999999999999999887765
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.14 Score=52.12 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHhccHHHHHH-HHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 011845 124 EAKANRYEQARN-LFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGK 202 (476)
Q Consensus 124 ~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 202 (476)
....+++++|.. ++. .-|+ ......++..+...|.+++|+...+ ++... .......|++++|.
T Consensus 609 ~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR 672 (814)
T ss_dssp HHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence 345677777765 331 1110 1222556667777888887776542 22222 23456789999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 203 KLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
+..+. .+++..|..+|..+...++++.|+.+|.++
T Consensus 673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87643 357889999999999999999999999886
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.028 Score=55.75 Aligned_cols=57 Identities=12% Similarity=-0.065 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 186 HVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 186 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 242 (476)
..-+..+...|+++-|+.+.++++...|.+...|..|+.+|...|+++.|+-.+..+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 333455555566666666666666666666666666666666666666665555544
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.71 E-value=0.34 Score=44.09 Aligned_cols=93 Identities=13% Similarity=-0.055 Sum_probs=58.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHH----HH
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPK------NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN---PRDPV----LL 219 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~ 219 (476)
.+|.+|...|++.+|...+.+..+.... -.+++..-..+|...+++.++...+.++.... +.+|. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5677777777777777777666653211 13455566667777777777777777665432 12232 33
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHhcc
Q 011845 220 QSLALLEY-KYSTANLARKLFRRASEI 245 (476)
Q Consensus 220 ~~la~~~~-~~~~~~~A~~~~~~~~~~ 245 (476)
..-|.++. ..++|..|...|-++++.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 44566667 678888887777777643
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.39 Score=44.92 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 94 GNIKKARQLLAKGLKF------CGGNEYIYQTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 94 ~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
|++.+|++.+....+. .+....+...+..++...|+++...+.+.-..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666676665333221 1233556666677777777777666655544433
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.063 Score=54.59 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhcc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchhHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKF----CGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCASWIAWS 155 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la 155 (476)
..+..+...|.+.|+.++|..+|..+.+. ...+..+|..+...|.+.|+.++|.++|+++.... ..+..+|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34566677777777777777777554322 23456677777777777777777777777776554 23455666666
Q ss_pred HHHHHhccH-HHHHHHHHHHHHcC
Q 011845 156 QMEMQQENN-LAARQLFERAVQAS 178 (476)
Q Consensus 156 ~~~~~~~~~-~~A~~~~~~a~~~~ 178 (476)
.++.+.|+. ++|..+|+++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 677776663 56667777766643
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.092 Score=41.45 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 011845 57 NKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNL 136 (476)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 136 (476)
.+.|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-.. ..+..+|...|+.+.-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHH
Confidence 3456666666665543 34556666666666666666666666665321 2333344445555444433
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHH
Q 011845 137 FRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFER 173 (476)
Q Consensus 137 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 173 (476)
-+.+...... .....++...|++++++++|.+
T Consensus 83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333222111 1122334455666666555543
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.50 E-value=0.066 Score=54.46 Aligned_cols=98 Identities=9% Similarity=-0.049 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccC-CCcHHHHHHHH
Q 011845 47 YIWQCWAVLENKLGNIGKARELFDASTVA----DKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFC-GGNEYIYQTLA 121 (476)
Q Consensus 47 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 121 (476)
..+..+...+++.|+.++|..+|..+... ..-+...|..+...+.+.|+.++|.++|+++.+.. ..+..+|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35778888999999999999999775432 23467888899999999999999999999987653 35777888888
Q ss_pred HHHHHhcc-HHHHHHHHHHHHhcC
Q 011845 122 LLEAKANR-YEQARNLFRQATKCN 144 (476)
Q Consensus 122 ~~~~~~g~-~~~A~~~~~~~~~~~ 144 (476)
.++.+.|+ .++|..+|+++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88988887 478889999988765
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.32 Score=38.41 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=54.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHH
Q 011845 227 YKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAA 306 (476)
Q Consensus 227 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 306 (476)
...|+++.|.++.+.. ++...|..+|......|+++-|..+|.++-. +..+..+|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHH
Confidence 5566777776665544 4566777777777777777777777766521 12234455556665554
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 011845 307 RRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNL 346 (476)
Q Consensus 307 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 346 (476)
...-+.+...... .....++...|+++++.+++..
T Consensus 80 ~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 4444443322211 1122345566677776666543
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.17 E-value=0.081 Score=44.71 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=50.8
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHH
Q 011845 225 LEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCL 290 (476)
Q Consensus 225 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 290 (476)
.+.+.|+.++|+..+...++..|.+......+..+++-.|+++.|..-++.+.+++|+.......|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 345677888888888888888888888888888888888888888888888888888765543333
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.05 E-value=0.85 Score=46.34 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHhhccCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCc---C---cH----HHHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGEN----PYIWQCWAVLENKLGNIGKARELFDASTVADK---G---HI----AAWHGWAVL 89 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~---~~----~~~~~la~~ 89 (476)
.|+.++++..+.+.+......+ ..+.+.+|.++...+ .+++..+...+..+. . .. .+...+|.+
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4555566666665543110111 123333444433333 356666655554221 0 11 233355555
Q ss_pred HHHhCCHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHH
Q 011845 90 ELRQGNIKKARQLLAKGLKFCGGN--EYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAA 167 (476)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 167 (476)
+.-.++ +++.+.+...+..+... ..+-+.+|.++.-.|+-+....++..+.+...+...-...+|..+...|+.+.+
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 554444 34445555554432211 123345556666666655555555554443222222222233333344555544
Q ss_pred HHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 168 RQLFERAVQASPKNR--FAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 168 ~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
-.+.+.......... .+-..+|..|...|+......++..+..
T Consensus 544 ~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 544 DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 444444333211111 1123345555566665444445555543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.00 E-value=1.2 Score=47.29 Aligned_cols=191 Identities=12% Similarity=-0.024 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Q 011845 151 WIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVN------------------ 212 (476)
Q Consensus 151 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------ 212 (476)
...+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-.-.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3345555666777766554 334567777777899999999999999999998873211
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCH----HHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 213 -----PRDPVLLQSLALLEYKYSTANLARKLFRRASEIDP-RHQ----PVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 213 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
...+..|..+..++.+.+.++.+++..+.+++..+ ++. ..|..+-..+...|+|++|...+...-..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 11234567788888899999999999999987654 332 26777888889999999998887654322
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHH------------HHHHHHH-HHhh-CCCc-HHHHHHHHHHHHHcCChHHHHHH-HHH
Q 011845 283 TESAARCLQAWGVLEQRVGNLSA------------ARRLFRS-SLNI-NSQS-YITWMTWAQLEEDQGNSVRAEEI-RNL 346 (476)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-al~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~ 346 (476)
.....++..+....++.|..+. -.+++.. |-.. ++.+ +..+..|-..+...|++..|..+ |+.
T Consensus 968 -~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 968 -PLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp -SSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 2223455555555555555433 2223321 1111 2222 23344455666778888877665 554
Q ss_pred HHh
Q 011845 347 YFQ 349 (476)
Q Consensus 347 ~~~ 349 (476)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.91 E-value=0.09 Score=44.46 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=71.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHH
Q 011845 192 EANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARE 271 (476)
Q Consensus 192 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 271 (476)
+.+.|..++|+..+...++.+|.+......+..+++-.|++++|..-++.+.+++|.....-..+-.+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 456677888888888888888888888888888888888888888888888888876543221111110 0111
Q ss_pred HHHHHHcc-----CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc
Q 011845 272 LYERALSI-----DSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS 320 (476)
Q Consensus 272 ~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 320 (476)
.=.+.+.- .+..+..+.....-+......|+.++|...-.++++..|..
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111111 11222222223333455555677777777777776665543
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.90 E-value=1.1 Score=41.76 Aligned_cols=186 Identities=6% Similarity=-0.042 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHHHhhcc-----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHH---HH-HhC
Q 011845 24 QSKVAEARAIYAKGSQA-----TQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVL---EL-RQG 94 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~---~~-~~~ 94 (476)
.|++++|++.+....+. +.+....+...+..++...|+++...+.+.-..........+...+... +. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36677777766443321 1133455666777777788888777666655443322222222211111 11 112
Q ss_pred CHH--HHHHHHHHhhccCCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--C----chhHHHHHHHHHH
Q 011845 95 NIK--KARQLLAKGLKFCGG-------NEYIYQTLALLEAKANRYEQARNLFRQATKCNP--K----SCASWIAWSQMEM 159 (476)
Q Consensus 95 ~~~--~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~----~~~~~~~la~~~~ 159 (476)
..+ .-+...+.......+ ...+...++.+|...|++.+|...+.....-.- . -.+.+....+++.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 111 111111111111111 123445566666666666666666665542110 0 1234455555566
Q ss_pred HhccHHHHHHHHHHHHH---cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011845 160 QQENNLAARQLFERAVQ---ASPKNR----FAWHVWGIFEANMGFIDKGKKLLKIGH 209 (476)
Q Consensus 160 ~~~~~~~A~~~~~~a~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 209 (476)
..+++.+|...+.++.. ..+..+ ..+...|.++...++|.+|-.+|..++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666655555421 112111 233444555555555555555554444
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.87 E-value=0.16 Score=46.50 Aligned_cols=61 Identities=11% Similarity=-0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 289 CLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 289 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
++..++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|...|+.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999999999999999999999999999988866
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.83 E-value=0.46 Score=36.73 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
..++.+++-.|.+..++-.+... +.....+.-+.||....++..|+..++..+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444322 223334444445555555555555555554
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.61 Score=43.74 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=57.0
Q ss_pred HHHHHhccHHHHHHHHHHHHh---c--------CCCchhHHHHHHHHHHHhccHHHH----------HHHHHHHHHc---
Q 011845 122 LLEAKANRYEQARNLFRQATK---C--------NPKSCASWIAWSQMEMQQENNLAA----------RQLFERAVQA--- 177 (476)
Q Consensus 122 ~~~~~~g~~~~A~~~~~~~~~---~--------~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~a~~~--- 177 (476)
..+...+++++|..+-...+. + ++-...+|+.++.++...|+.... ...+-.++..
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 344567788888877665541 1 223345677777777777765542 2233333322
Q ss_pred --CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 011845 178 --SPK-NRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRD-------PVLLQSLALLEYKYSTANLARKLFRRASEIDP 247 (476)
Q Consensus 178 --~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 247 (476)
++. ...++..+...|...+.+++|..+..++. .|.. ...++.+|.++...++|.+|.+.+..++...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 222 25677888889999999999999999885 3422 33567789999999999999999999998877
Q ss_pred CC
Q 011845 248 RH 249 (476)
Q Consensus 248 ~~ 249 (476)
.+
T Consensus 302 ~~ 303 (523)
T 4b4t_S 302 HN 303 (523)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.36 E-value=0.31 Score=44.64 Aligned_cols=111 Identities=12% Similarity=0.024 Sum_probs=76.6
Q ss_pred HHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHH-HHHHHHHHhcCCCchhHHHHHHHHHHHhccHH
Q 011845 87 AVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQA-RNLFRQATKCNPKSCASWIAWSQMEMQQENNL 165 (476)
Q Consensus 87 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 165 (476)
|......|+.+.|...+.+++.+.....-.- .. ...|-.+ ...+++. ...+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHH
Confidence 3334456899999999999988753221100 00 0111111 1111111 1234556778888999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011845 166 AARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 166 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 210 (476)
+++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.29 E-value=0.53 Score=49.99 Aligned_cols=61 Identities=13% Similarity=-0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-h----hHHHHHHHHHHHhccHHHHHHHHHHH
Q 011845 114 EYIYQTLALLEAKANRYEQARNLFRQATKCNPKS-C----ASWIAWSQMEMQQENNLAARQLFERA 174 (476)
Q Consensus 114 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~~~a 174 (476)
+..|..+..++.+.+.++.+++..+.+++..+.+ . ..|..+-..+...|+|++|...+...
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 4455666666777777777777777776654322 1 14555666666677777776665443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.18 Score=47.04 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHcc---CCCChhHHHHHH
Q 011845 218 LLQSLALLEYKYSTANLARKLFRRASEIDP---RHQPVWIAWGWMEWKEGNLDTARELYERALSI---DSTTESAARCLQ 291 (476)
Q Consensus 218 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 291 (476)
++..+|..+...|++++|.+.|.++..... .....+.....++...+++..+...+.++... .++......+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344444444444554444444444443221 12244445555555555555555555555332 122211122233
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
..|.++...++|.+|...|-.++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3355555666666666666665544
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.26 Score=46.20 Aligned_cols=177 Identities=8% Similarity=0.066 Sum_probs=74.5
Q ss_pred HHHHhccHHHHHHHHHHHHH---c--------CCCcHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHh-----
Q 011845 157 MEMQQENNLAARQLFERAVQ---A--------SPKNRFAWHVWGIFEANMGFIDKG----------KKLLKIGHA----- 210 (476)
Q Consensus 157 ~~~~~~~~~~A~~~~~~a~~---~--------~~~~~~~~~~l~~~~~~~~~~~~A----------~~~~~~~~~----- 210 (476)
.+...+++++|..+-...+. + ++-...+|+.++.++...|+.... +..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45567888888877765541 1 223356677777777777766542 222222222
Q ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHccCCC
Q 011845 211 VNPR-DPVLLQSLALLEYKYSTANLARKLFRRASEIDPRH-------QPVWIAWGWMEWKEGNLDTARELYERALSIDST 282 (476)
Q Consensus 211 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 282 (476)
.++. ...++..+-+.|...+.+++|..+..++. .|.. ...++.+|.++...++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 1221 14466777888888888888888888875 3321 245567788888888888888888888888775
Q ss_pred Chh----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCChHHHHH
Q 011845 283 TES----AARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQS---YITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 283 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
+.. ...++..+..+-.-+|+..+- ..|. .+.. ...|..++.++ +.|+...-..
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~ 362 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAV-KLGDLKKFTS 362 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 532 122222233333345665431 1111 1222 12355566664 5677655333
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.53 E-value=2.1e-06 Score=78.16 Aligned_cols=203 Identities=13% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHH
Q 011845 9 EDGRPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAV 88 (476)
Q Consensus 9 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 88 (476)
+.+.+|..+|.+++..|...+|++.|-++ .|+..+........+.|.+++-+.++.-+-+. -..+.+=..+..
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 56788999999999999999888877654 34444555566667788888888888776543 233333345566
Q ss_pred HHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------------------CCCc
Q 011845 89 LELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKC---------------------NPKS 147 (476)
Q Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------~p~~ 147 (476)
+|.+.++..+-.+++. .|+... ....|.-++..|.|+.|.-+|..+-.. ..++
T Consensus 125 ayAk~~rL~elEefl~-----~~N~A~-iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-----GPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHHTSCSSSTTTSTTS-----CCSSSC-THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHHhhCcHHHHHHHHc-----CCCccc-HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6666666543222211 122211 234455555555555554444322100 0123
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845 148 CASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227 (476)
Q Consensus 148 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 227 (476)
+.+|......+...+++.-|..+--..+ ..++. +-.+...|...|.+++-+.+++.++.....+...+..||.+|.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-vhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 3344444444444444444433322222 11111 1122333444555555555555555555555555555555544
Q ss_pred H
Q 011845 228 K 228 (476)
Q Consensus 228 ~ 228 (476)
+
T Consensus 275 K 275 (624)
T 3lvg_A 275 K 275 (624)
T ss_dssp S
T ss_pred h
Confidence 4
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.11 Score=48.38 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCcH----H
Q 011845 249 HQPVWIAWGWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNIN--SQSY----I 322 (476)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~----~ 322 (476)
-..++..+|..|...|++++|.+.|.++............++.....++...+++..+..++.++-... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 345778999999999999999999999988766666667788888999999999999999999986652 2222 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 011845 323 TWMTWAQLEEDQGNSVRAEEIRNLYFQ 349 (476)
Q Consensus 323 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 349 (476)
.....|.++...++|..|...|-.++.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 344556667778999999888776654
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.17 E-value=0.36 Score=45.52 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011845 150 SWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKKLLKIGHAVNPRDPVLLQSLALLEY 227 (476)
Q Consensus 150 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 227 (476)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 345566666666667777777777777777777777777777777777777777777777666556666666665554
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.95 E-value=6.2 Score=40.23 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=82.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---C---CH----HHHHHH
Q 011845 192 EANMGFIDKGKKLLKIGHAVN-PRD----PVLLQSLALLEYKYSTANLARKLFRRASEIDP---R---HQ----PVWIAW 256 (476)
Q Consensus 192 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l 256 (476)
....|+.++++..+.+.+... ..+ ..+++.+|.++...+ .++..++...+.... . .. .+-..+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 344567777777777666422 222 234555666655554 357777776665432 0 11 233456
Q ss_pred HHHHHHcCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 011845 257 GWMEWKEGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGN 336 (476)
Q Consensus 257 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 336 (476)
|.++...++ +++.+.+...+..+.. ......-..+|.++.-.|+-+....+++.+.+...++..-...++..+...|+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 665554444 4566666666653321 11122344567777777777666666666654333222222334444446677
Q ss_pred hHHHHHHHHHHHh
Q 011845 337 SVRAEEIRNLYFQ 349 (476)
Q Consensus 337 ~~~A~~~~~~~~~ 349 (476)
.+.+..+.+....
T Consensus 540 ~e~~~~li~~L~~ 552 (963)
T 4ady_A 540 QELADDLITKMLA 552 (963)
T ss_dssp GGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 7777776665543
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.82 E-value=0.53 Score=44.41 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQ 160 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 160 (476)
..+..+|.+......+..|..+|.++..+.|.+...+..+|.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888889999999999999999999999999999888888889888888888776677788777777664
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.18 E-value=2.8e-06 Score=77.40 Aligned_cols=304 Identities=12% Similarity=0.095 Sum_probs=191.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 011845 44 ENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALL 123 (476)
Q Consensus 44 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 123 (476)
+.+.+|..+|.++...|...+|++.|-++ +++..+........+.|.+++-+.++..+.+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45778888999988888888888887654 33334445556666788888888888777654 3445555677778
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 011845 124 EAKANRYEQARNLFRQATKCNPKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKNRFAWHVWGIFEANMGFIDKGKK 203 (476)
Q Consensus 124 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 203 (476)
|.+.++..+-.+++. .|+.. -....|.-++..|.|+.|.-+|..+ ++ |..++.++..+|++..|++
T Consensus 126 yAk~~rL~elEefl~-----~~N~A-~iq~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSS-CTHHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTT
T ss_pred HHhhCcHHHHHHHHc-----CCCcc-cHHHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHH
Confidence 888887654333221 24433 3355778888888888887666542 22 4567778888899988887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHccCCCC
Q 011845 204 LLKIGHAVNPRDPVLLQSLALLEYKYSTANLARKLFRRASEIDPRHQPVWIAWGWMEWKEGNLDTARELYERALSIDSTT 283 (476)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 283 (476)
.-+++ +++.+|-.....+...+++.-|..+--..+- .++. +-.+...|...|-+++-+.+++.++.+...+
T Consensus 192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 76553 4567788888888888888777665544443 2222 2235566778999999999999999887776
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C-CC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhc
Q 011845 284 ESAARCLQAWGVLEQRVGNLSAARRLFRSSLNI-N-SQ------SYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVV 355 (476)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 355 (476)
..++..+|.+|.+- ++++-.++++.-... + |. ....|..+.-+|.+-.+++.|. ..+++..++.+
T Consensus 263 ---mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~---ltMi~h~~~Aw 335 (624)
T 3lvg_A 263 ---MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI---ITMMNHPTDAW 335 (624)
T ss_dssp ---HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH---HTTTSCHHHHC
T ss_pred ---HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH---HHHHhCChhhc
Confidence 34577778877654 556666665542221 1 22 2335677777777777777542 33333434444
Q ss_pred ch--hhhhhhhcccchHHHHHHHHHhcccc
Q 011845 356 DD--ASWVMGFMDIIDPALDRIKQLLNLEK 383 (476)
Q Consensus 356 ~~--~~~~~~~~g~~~~A~~~~~~al~~~p 383 (476)
.. .-.+..+..+.+---+...--++..|
T Consensus 336 ~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P 365 (624)
T 3lvg_A 336 KEGQFKDIITKVANVELYYRAIQFYLEFKP 365 (624)
T ss_dssp CGGGGTTTGGGCSCSHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHcchHHHHHHHHHHHHHhCh
Confidence 22 22244444554433333333333344
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.93 E-value=7.9 Score=34.11 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=9.3
Q ss_pred HHHHcCCHHHHHHHHHH
Q 011845 191 FEANMGFIDKGKKLLKI 207 (476)
Q Consensus 191 ~~~~~~~~~~A~~~~~~ 207 (476)
.|...++...|...+..
T Consensus 196 ~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 34555666666554443
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.89 E-value=5.9 Score=29.58 Aligned_cols=57 Identities=19% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 88 VLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
..+..+|+-++-.+++...+...+-+++.+..+|..|.+.|+..+|.+++.+|.+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344566666666666666555555566777777777777777777777777766553
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.72 E-value=19 Score=31.36 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=14.5
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHH
Q 011845 112 GNEYIYQTLALLEAKANRYEQARNLF 137 (476)
Q Consensus 112 ~~~~~~~~la~~~~~~g~~~~A~~~~ 137 (476)
.++..+..+|..|...|++.+|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 34555555555555555555555554
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.16 E-value=13 Score=38.46 Aligned_cols=46 Identities=11% Similarity=-0.056 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCchh----HHHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCN-PKSCA----SWIAWSQMEMQ 160 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~----~~~~la~~~~~ 160 (476)
..|...+.++...+-++-++...+.|++.. +++.. .|..+-.....
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 467788888899999999999999998754 33433 45454444443
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.65 E-value=24 Score=36.57 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=35.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 011845 86 WAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANRYEQARNLFRQAT 141 (476)
Q Consensus 86 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 141 (476)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555666665443 3445556666666778888888888888888887764
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.92 E-value=28 Score=30.39 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHHHHhccHHHHHHHHH
Q 011845 146 KSCASWIAWSQMEMQQENNLAARQLFE 172 (476)
Q Consensus 146 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 172 (476)
.++..+..+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 567788888888888888888877764
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.25 E-value=33 Score=30.23 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=21.0
Q ss_pred CCchhHHHHHHHHHHHhccHHHHHHHH
Q 011845 145 PKSCASWIAWSQMEMQQENNLAARQLF 171 (476)
Q Consensus 145 p~~~~~~~~la~~~~~~~~~~~A~~~~ 171 (476)
-.++..+..+|..|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 356778888888888888888887776
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.47 E-value=64 Score=31.61 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=18.4
Q ss_pred hhhhcccchHHHHHHHHHhccccCC
Q 011845 361 VMGFMDIIDPALDRIKQLLNLEKSS 385 (476)
Q Consensus 361 ~~~~~g~~~~A~~~~~~al~~~p~~ 385 (476)
-++..|++++|++.+++ +.+-|-+
T Consensus 547 ~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 547 ELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34678999999999988 5677754
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.43 E-value=32 Score=27.64 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 96 IKKARQLLAKGLK--FCGGNEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 96 ~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
..++..+|.-+.. +....+..|...|..+...|++.+|..+|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344444444432 223344445555555555555555555555555543
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.71 E-value=88 Score=30.67 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHHhc
Q 011845 326 TWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQLLN 380 (476)
Q Consensus 326 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 380 (476)
..|.-....|++++|+.+|. ..|+++.++..+.+++.
T Consensus 448 ~aA~~ae~~G~~~dAi~LY~------------------La~~~d~vl~lln~~Ls 484 (661)
T 2qx5_A 448 QAARRADEDGRIYDSILLYQ------------------LAEEYDIVITLVNSLLS 484 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH------------------HhcCHHHHHHHHHHHHH
Confidence 34555566677777666544 45778888888777665
No 275
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.08 E-value=34 Score=25.64 Aligned_cols=26 Identities=12% Similarity=-0.103 Sum_probs=15.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCcCc
Q 011845 54 VLENKLGNIGKARELFDASTVADKGH 79 (476)
Q Consensus 54 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 79 (476)
.-..-.|..++..++..+.....+..
T Consensus 15 K~~ildG~v~qGveii~k~~~ssni~ 40 (172)
T 1wy6_A 15 KKFLLDGYIDEGVKIVLEITKSSTKS 40 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCCcc
Confidence 33445566667777666666544433
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=67.32 E-value=18 Score=23.52 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=17.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845 293 WGVLEQRVGNLSAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 293 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 322 (476)
+|..+...|++++|..+|-+|+...|+-..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 455556666666666666666665555443
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.92 E-value=21 Score=23.20 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHccCCCChh
Q 011845 255 AWGWMEWKEGNLDTARELYERALSIDSTTES 285 (476)
Q Consensus 255 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 285 (476)
.+|..+...|++++|...|-+|+...|....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4677777788888888888888887777644
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.13 E-value=50 Score=25.14 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhh
Q 011845 304 SAARRLFRSSLNI--NSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTE 353 (476)
Q Consensus 304 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 353 (476)
+++.++|.-+... .-.....|..+|..+...|++.+|.++|+..++...+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3366666665543 3455667777777777888888888877777765443
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.98 E-value=57 Score=25.11 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCcCc---HHHHHHH------HHHHHHhCCHHHHHHHHHHhhc
Q 011845 50 QCWAVLENKLGNIGKARELFDASTVADKGH---IAAWHGW------AVLELRQGNIKKARQLLAKGLK 108 (476)
Q Consensus 50 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l------a~~~~~~~~~~~A~~~~~~~~~ 108 (476)
+..+..++..|+|-+|-++++.+-...+.. ...|..+ |..+.+.|+...|..++.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445666677788888888888887655433 2223222 3345567788888887777765
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.88 E-value=44 Score=27.36 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhhhhhcchhhhhhhhcccchHHHHHHHHH-hc
Q 011845 304 SAARRLFRSSLNI--NSQSYITWMTWAQLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFMDIIDPALDRIKQL-LN 380 (476)
Q Consensus 304 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~ 380 (476)
+++..+|.-+... .-.....|..+|.++...|++.+|..+|+..++....... ++.++...|+.= ++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~----------rL~~~~~~F~~R~~~ 200 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL----------RFQQKYQQFTHRWLE 200 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH----------HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH----------HHHHHHHHHHHHHHh
Confidence 4556666665543 4556677888888888888888888888888775443322 234444445443 55
Q ss_pred cccCCCC
Q 011845 381 LEKSSYK 387 (476)
Q Consensus 381 ~~p~~~~ 387 (476)
..|.+..
T Consensus 201 ~~~~~~~ 207 (223)
T 4aez_C 201 FAPQSFS 207 (223)
T ss_dssp HCGGGCC
T ss_pred cCCCccc
Confidence 5555433
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.07 E-value=64 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhhccCCCc---HHHH------HHHHHHHHHhccHHHHHHHHHHHHhc
Q 011845 84 HGWAVLELRQGNIKKARQLLAKGLKFCGGN---EYIY------QTLALLEAKANRYEQARNLFRQATKC 143 (476)
Q Consensus 84 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~------~~la~~~~~~g~~~~A~~~~~~~~~~ 143 (476)
+..+..++..|+|-+|-++++.+....+.. ...+ ...|......|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666777799999999999988776543 2222 22334556678888888888888764
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=57.01 E-value=27 Score=32.41 Aligned_cols=62 Identities=6% Similarity=-0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCc--------C--cHHHHHHHHHHHHHhCCHHHHHHHHHHhhcc-CCC
Q 011845 51 CWAVLENKLGNIGKARELFDASTVADK--------G--HIAAWHGWAVLELRQGNIKKARQLLAKGLKF-CGG 112 (476)
Q Consensus 51 ~la~~~~~~g~~~~A~~~~~~~~~~~p--------~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~ 112 (476)
.+-.+|++.|+..-+..+++.+-...+ . -....+.+|.++..+++|.+|.+.+..|+.. .|.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 445778888888888888765533211 1 1244556677777777777777777776666 553
No 283
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=55.07 E-value=92 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845 117 YQTLALLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 117 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
+..++.+..+.++|++...+.+++...++
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~ 35 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNE 35 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34445555555555555555555555443
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.53 E-value=16 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHcCCHHHHHHHHHHHh
Q 011845 57 NKLGNIGKARELFDAST 73 (476)
Q Consensus 57 ~~~g~~~~A~~~~~~~~ 73 (476)
-+.|++++|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 35566666666666554
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.86 E-value=28 Score=23.63 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 011845 287 ARCLQAWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 314 (476)
+..+...+..+...|+|++|+++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566777888888888887777665
No 286
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.92 E-value=68 Score=29.75 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC--C--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHcc-CCCC
Q 011845 220 QSLALLEYKYSTANLARKLFRRASEIDP--R--------HQPVWIAWGWMEWKEGNLDTARELYERALSI-DSTT 283 (476)
Q Consensus 220 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~ 283 (476)
..+-.+|++.++..-+..+++..-...+ . -....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4456788888888888777765433221 1 1245677888888888888888888888887 6654
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.85 E-value=28 Score=23.94 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCcHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLNINSQSYI 322 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 322 (476)
.+|..+...|+++.|+.+|-+|+...|+-..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4577777777777777777777777665444
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.61 E-value=81 Score=24.34 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=30.2
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 268 TARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 268 ~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
.+..+|..+....-.... ..+|..+|..+...|++.+|.++|+..++....
T Consensus 78 ~p~~if~~L~~~~IG~~~-AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSL-AQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp CHHHHHHHHHHTTSSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 355555555544322221 335666677777777777777777777766533
No 289
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.49 E-value=17 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.1
Q ss_pred HcCCHHHHHHHHHHHh
Q 011845 58 KLGNIGKARELFDAST 73 (476)
Q Consensus 58 ~~g~~~~A~~~~~~~~ 73 (476)
+.|++++|+.+|..++
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566666666555554
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.10 E-value=98 Score=24.84 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCc
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCN--PKSCASWIAWSQMEMQQENNLAARQLFERAVQASPKN 181 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 181 (476)
...+|..++..+ ..+...++..+|.-+.... ...+..|...|..+...|++.+|..+|+..++..-..
T Consensus 79 YLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 79 FLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345667766665 2344667888888777654 5667788999999999999999999999999876443
No 291
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=49.21 E-value=1.2e+02 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNP 145 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 145 (476)
+-+..++.+..+.++|++.....+++.+.++
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~ 62 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV 62 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3444555555555566665555555555443
No 292
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.69 E-value=1.5e+02 Score=26.70 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 011845 221 SLALLEYKYSTANLARKLFRRA 242 (476)
Q Consensus 221 ~la~~~~~~~~~~~A~~~~~~~ 242 (476)
.++..+...|+.++|..+++++
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444445555554444444
No 293
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=48.65 E-value=38 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhhccCC
Q 011845 85 GWAVLELRQGNIKKARQLLAKGLKFCG 111 (476)
Q Consensus 85 ~la~~~~~~~~~~~A~~~~~~~~~~~p 111 (476)
.+|.++...++|.+|...+..++...|
T Consensus 19 YlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 19 YVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 344444444444444444444444333
No 294
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=48.08 E-value=24 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.042 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011845 13 PYVALGKVLSKQSKVAEARAIYAKGS 38 (476)
Q Consensus 13 ~~~~la~~~~~~g~~~~A~~~~~~~~ 38 (476)
.+-..+..+...|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456667777777777777766654
No 295
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=47.29 E-value=1.3e+02 Score=25.33 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-----cCCCcHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 011845 165 LAARQLFERAVQ-----ASPKNRF---AWHVWGIFE-ANMGFIDKGKKLLKIGHA 210 (476)
Q Consensus 165 ~~A~~~~~~a~~-----~~~~~~~---~~~~l~~~~-~~~~~~~~A~~~~~~~~~ 210 (476)
+.|...|+.|.+ +.|.+|. +..+.+.+| .-.++.++|..+.++++.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555543 3455542 222333333 335777777776666553
No 296
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.17 E-value=1.2e+02 Score=25.03 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-hhHHHHHHHHH
Q 011845 115 YIYQTLALLEAKANRYEQARNLFRQATKCNPKS-CASWIAWSQME 158 (476)
Q Consensus 115 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~ 158 (476)
+-...++.+..+.++|++...+.+++.+.++.- .+-...+..+|
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 334556667777777777777777777665432 23334444444
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.48 E-value=37 Score=23.34 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=14.8
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHcCCC
Q 011845 153 AWSQMEMQQENNLAARQLFERAVQASPK 180 (476)
Q Consensus 153 ~la~~~~~~~~~~~A~~~~~~a~~~~~~ 180 (476)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3455555555555555555555554443
No 298
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.47 E-value=65 Score=25.93 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHccCCCChhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 011845 251 PVWIAWGWMEWKEGNLDTARELYERALSIDSTTESA--ARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWA 328 (476)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 328 (476)
...+.+|.++...++|.+|.+.+..|+...|..... ..++..+.-+-.-+|++.. ...+++ .+.. .+..+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~~--~y~~L~ 87 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHLM--QFAEVT 87 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTCG--GGHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cchh--HHHHHH
Confidence 456789999999999999999999999998866432 3344444455566777653 333332 1111 355555
Q ss_pred HHHHHcCChHHHHHHHH
Q 011845 329 QLEEDQGNSVRAEEIRN 345 (476)
Q Consensus 329 ~~~~~~g~~~~A~~~~~ 345 (476)
.+ .+.|+...-.+.++
T Consensus 88 ~A-vr~Gdl~~f~~~l~ 103 (203)
T 3t5x_A 88 RA-VSEGNLLLLHEALA 103 (203)
T ss_dssp HH-HHHTCHHHHHHHHH
T ss_pred HH-HHhCCHHHHHHHHH
Confidence 44 46787665544443
No 299
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=44.87 E-value=1.3e+02 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHHHHHHc-----cCCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q 011845 268 TARELYERALS-----IDSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSL 314 (476)
Q Consensus 268 ~A~~~~~~a~~-----~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al 314 (476)
.|...|+.|.+ +.|.+|....+..+.+..|+ -.++.++|....++++
T Consensus 151 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 151 SARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444432 35555554444444444433 3455666555555443
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.92 E-value=18 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 011845 14 YVALGKVLSKQSKVAEARAIYAKGSQ 39 (476)
Q Consensus 14 ~~~la~~~~~~g~~~~A~~~~~~~~~ 39 (476)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34566677777777777777777654
No 301
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=42.48 E-value=1.4e+02 Score=24.58 Aligned_cols=45 Identities=11% Similarity=-0.070 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLE 56 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~ 56 (476)
+-+..++.+..+.++|++.+.+.++++..++.-+.+-...+..+|
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445677888888899999998888888776555566566666555
No 302
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.13 E-value=40 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
..|.-....|++++|+.+|..+++
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 334555667777777777777664
No 303
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=40.92 E-value=1.6e+02 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCChHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQAT--QGENPYIWQCWAVLE 56 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~ 56 (476)
+-+..++.+..+.++|++.+.+.++++..+ +.-+.+-...+..+|
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 445667777777888888888888877755 444555555555554
No 304
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=39.21 E-value=1.7e+02 Score=24.41 Aligned_cols=59 Identities=7% Similarity=0.056 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-cCCHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQATQGENPYIWQCWAVLENK-LGNIGKARELFD 70 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~ 70 (476)
+-+..+|.+..+.++|++.....++++..++.-+.+-...+..+|-. .|....+...+.
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 34566778888888888888888888877655555555556555532 233334444443
No 305
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.35 E-value=46 Score=22.18 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=13.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 011845 294 GVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~ 315 (476)
|.-..+.|++++|+.+|..+++
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445566777777777766654
No 306
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.64 E-value=2.4e+02 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=31.8
Q ss_pred HHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 235 ARKLFRRASEI-----DPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 235 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
++.+|.+++.. .......|..+|-.+++.+++.+|+..+-.+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 55666665543 234556777888899999999999999887754
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.64 E-value=1.8e+02 Score=23.75 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 267 DTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 267 ~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
+.+..+|.-+....-.... ..+|..+|..+...|++.+|..+|+..++....
T Consensus 131 ~~p~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQES-SIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4555666665554332222 345666788888888888888888888776543
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.02 E-value=43 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhh
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~~ 316 (476)
..+|.=|...|+|+.|+.+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45577788888999999888887753
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.81 E-value=1.8e+02 Score=23.55 Aligned_cols=46 Identities=2% Similarity=0.060 Sum_probs=34.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHH
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVR 339 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 339 (476)
..++.+.|.|++|.+.+++.+..+|.+......|..+-.+..-+..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccH
Confidence 3456788999999999999888877777777777777666655444
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.50 E-value=1.5e+02 Score=22.49 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=16.4
Q ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 113 NEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 113 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
.+..|...|..+...|++.+|..+|+..++..
T Consensus 100 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 100 SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444555555555555555555555555443
No 311
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=34.48 E-value=2.1e+02 Score=24.08 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCChHHHHHHHHHH
Q 011845 12 RPYVALGKVLSKQSKVAEARAIYAKGSQAT---QGENPYIWQCWAVLE 56 (476)
Q Consensus 12 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~ 56 (476)
+-+..++.+..+.++|++.+.+.+++++.+ +.-+.+-...+..+|
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 344556677777777777777777776654 344445455555444
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=34.02 E-value=75 Score=21.33 Aligned_cols=25 Identities=8% Similarity=0.047 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 291 QAWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 291 ~~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
...|.-....|++++|+.+|..+++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556677888888888877765
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.87 E-value=2.3e+02 Score=26.32 Aligned_cols=46 Identities=9% Similarity=-0.041 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDAS 72 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 72 (476)
..+.+-|+.+..+. +-|.....+...-.-++..|+|++|..+.-..
T Consensus 342 l~n~~lA~~lA~R~---~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 342 LQNPDLALRMAVRN---NLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp TCCHHHHHHHHHHT---TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHhc---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 46777777766665 22555666666677888889999988877655
No 314
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.78 E-value=2.1e+02 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHHHHHHHc-----cCCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 011845 268 TARELYERALS-----IDSTTESAARCLQAWGVLEQR-VGNLSAARRLFRSSL 314 (476)
Q Consensus 268 ~A~~~~~~a~~-----~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al 314 (476)
.|...|+.|.. +.|.+|....+..+++..|+. +++.++|...-++++
T Consensus 153 ~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 153 STLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44455555443 466666555555555555444 567777776666655
No 315
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=32.92 E-value=1.2e+02 Score=21.07 Aligned_cols=73 Identities=15% Similarity=-0.084 Sum_probs=38.8
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
....++|..+-+ .+...++ .....+ -....+...|+|++|....+..- .++.-..++.+..+.|-.+++..
T Consensus 19 ~H~HqEA~tIAd-wL~~~~~-~E~v~l--IR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAE-WLERLGQ-DEAARL--IRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHH-HHHHTTC-HHHHHH--HHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHH-HHHhCCc-HHHHHH--HHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHH
Confidence 345566654443 3444444 333221 12455667777777766544321 34444456666677777777665
Q ss_pred HH
Q 011845 343 IR 344 (476)
Q Consensus 343 ~~ 344 (476)
-+
T Consensus 90 rL 91 (115)
T 2uwj_G 90 RL 91 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 316
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.45 E-value=1.3e+02 Score=21.06 Aligned_cols=73 Identities=15% Similarity=-0.097 Sum_probs=37.5
Q ss_pred cCChhHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 011845 263 EGNLDTARELYERALSIDSTTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRAEE 342 (476)
Q Consensus 263 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 342 (476)
....++|..+-+ .+...++ .....+ -....+...|+|++|....+..- .++.-..++.+..+.|-.+++..
T Consensus 20 ~H~HqEA~tIAd-wL~~~~~-~E~v~l--IR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAE-WLHLKGE-EEAVQL--IRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHH-HHHHTTC-HHHHHH--HHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHH
T ss_pred chHHHHHHHHHH-HHHhCCc-HHHHHH--HHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHH
Confidence 445566654433 3344444 333211 12445667777777776554321 33334445566667776666655
Q ss_pred HH
Q 011845 343 IR 344 (476)
Q Consensus 343 ~~ 344 (476)
-+
T Consensus 91 rL 92 (116)
T 2p58_C 91 RL 92 (116)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 317
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=30.87 E-value=1.4e+02 Score=29.21 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Q 011845 81 AAWHGWAVLELRQGNIKKARQLLAKGLKFCGGNEYIYQTLALLEAKANR 129 (476)
Q Consensus 81 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 129 (476)
+.....|...+..|+|.-|.+++..++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666666666553
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.56 E-value=2.5e+02 Score=25.53 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 235 ARKLFRRASEI-----DPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 235 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 45555555543 234456677788888889999999888877644
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.40 E-value=2.2e+02 Score=23.11 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=17.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 011845 224 LLEYKYSTANLARKLFRRASEIDPRHQPVWIAWG 257 (476)
Q Consensus 224 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 257 (476)
.++.+.|.+++|.+++++....++.+......|.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~ 155 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLL 155 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3445556666666666666555444433333333
No 320
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=28.22 E-value=82 Score=21.51 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
..|.-....|++++|+.+|..+++
T Consensus 20 ~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 20 KRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445566777777777766654
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.64 E-value=1.1e+02 Score=20.35 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al~ 315 (476)
..|.-....|++++|+.+|..+++
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445566777777777777765
No 322
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=26.99 E-value=1.6e+02 Score=20.54 Aligned_cols=75 Identities=16% Similarity=-0.050 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 103 (476)
....++|..+-+-.-.. +....+-......+...|+|++|..+.+..- .++.--.++.+..+.|--.++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~--~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK--GEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 34566666555444322 2233333444555666777777766655432 2222223444555666666666655
Q ss_pred HH
Q 011845 104 AK 105 (476)
Q Consensus 104 ~~ 105 (476)
.+
T Consensus 93 ~~ 94 (116)
T 2p58_C 93 NR 94 (116)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 323
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.87 E-value=1.3e+02 Score=29.55 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCChHHH
Q 011845 290 LQAWGVLEQRVGNLSAARRLFRSSLNINSQSYITWMTWAQLEEDQGNSVRA 340 (476)
Q Consensus 290 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 340 (476)
....|......|++.-|.+....++..+|++..+...++.++.++|...+.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 344567777889999999999999999999999988889888888755443
No 324
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.71 E-value=3.7e+02 Score=24.18 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=10.8
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 011845 55 LENKLGNIGKARELFDAS 72 (476)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~ 72 (476)
+.....+.++|++.++++
T Consensus 85 ~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHH
Confidence 334555666676666655
No 325
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.57 E-value=1.7e+02 Score=20.37 Aligned_cols=75 Identities=17% Similarity=-0.015 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 011845 24 QSKVAEARAIYAKGSQATQGENPYIWQCWAVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLELRQGNIKKARQLL 103 (476)
Q Consensus 24 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 103 (476)
....++|..+-+-.-.. +....+-......+...|+|++|..+.+..- .++.--.++.+..+.|--.++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~--~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL--GQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 34556665554443222 2233333344455566666666665544322 2222233444555666666666555
Q ss_pred HH
Q 011845 104 AK 105 (476)
Q Consensus 104 ~~ 105 (476)
.+
T Consensus 92 ~~ 93 (115)
T 2uwj_G 92 AG 93 (115)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 326
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=25.44 E-value=3e+02 Score=23.09 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHc----cCCCChhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh
Q 011845 267 DTARELYERALS----IDSTTESAARCLQAWGVLEQR-VGNLSAARRLFRSSLN 315 (476)
Q Consensus 267 ~~A~~~~~~a~~----~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 315 (476)
+.|...|+.|.+ +.|.+|....+..+.+..|+. +++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555543 566666555555555555554 6777777776666654
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.98 E-value=1.2e+02 Score=21.87 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=14.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 011845 294 GVLEQRVGNLSAARRLFRSSLN 315 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~ 315 (476)
|.-....|++++|+.+|..+++
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 4444556777777777776654
No 328
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=23.07 E-value=1.5e+02 Score=24.93 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=24.2
Q ss_pred CCCChhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhh
Q 011845 280 DSTTESAARCLQAWGVLEQ-RVGNLSAARRLFRSSLNI 316 (476)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 316 (476)
.|.+|....+..+.+..|+ -+++.++|....++++..
T Consensus 189 ~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 189 YPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp GGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677665555555555555 467788877777777654
No 329
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.76 E-value=2.8e+02 Score=25.18 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=26.9
Q ss_pred HHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 011845 235 ARKLFRRASEI-----DPRHQPVWIAWGWMEWKEGNLDTARELYERALS 278 (476)
Q Consensus 235 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 278 (476)
++.+|.+++.. .......|..+|-.+.+.+++.+|+..+-.+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 34455555442 223345666677777777888888777776643
No 330
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.07 E-value=4.7e+02 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 011845 292 AWGVLEQRVGNLSAARRLFRSSL 314 (476)
Q Consensus 292 ~l~~~~~~~g~~~~A~~~~~~al 314 (476)
.+|-.+++.+++.+|+..+-.+-
T Consensus 323 YlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 323 YLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecchhhhhcchHHHHHHHHHHHH
Confidence 34666667777777766665543
No 331
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.28 E-value=1.4e+02 Score=23.87 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=19.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCcCcHHHHHHHHHHH
Q 011845 53 AVLENKLGNIGKARELFDASTVADKGHIAAWHGWAVLE 90 (476)
Q Consensus 53 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 90 (476)
..++.+.|.+++|.+++++....++.+......|..+-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34566777777777777777665554444444444433
No 332
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.21 E-value=2.1e+02 Score=19.46 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=19.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCC
Q 011845 294 GVLEQRVGNLSAARRLFRSSLNINSQ 319 (476)
Q Consensus 294 ~~~~~~~g~~~~A~~~~~~al~~~p~ 319 (476)
|..++..|+|=+|-+.++......|+
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 56666778888888888877776654
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.05 E-value=3e+02 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 011845 112 GNEYIYQTLALLEAKANRYEQARNLFRQATKCN 144 (476)
Q Consensus 112 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 144 (476)
..+..|...|..+...|++.+|..+|+.+++..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334444455555555555555555555555443
Done!