Query 011846
Match_columns 476
No_of_seqs 171 out of 1432
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 1E-121 3E-126 960.0 41.7 453 20-474 13-471 (483)
2 TIGR00127 nadp_idh_euk isocitr 100.0 3E-110 7E-115 863.6 37.2 384 80-474 1-401 (409)
3 PTZ00435 isocitrate dehydrogen 100.0 6E-109 1E-113 855.3 38.2 384 80-474 4-404 (413)
4 PRK08299 isocitrate dehydrogen 100.0 3E-106 7E-111 833.1 39.4 389 80-474 2-396 (402)
5 PLN00103 isocitrate dehydrogen 100.0 1E-105 2E-110 831.2 38.6 393 79-474 3-404 (410)
6 PLN00096 isocitrate dehydrogen 100.0 4E-105 8E-110 818.4 33.6 377 89-474 2-391 (393)
7 COG0473 LeuB Isocitrate/isopro 100.0 6E-105 1E-109 803.3 29.5 333 84-474 2-343 (348)
8 PLN00118 isocitrate dehydrogen 100.0 4E-101 9E-106 790.1 34.2 326 85-474 41-370 (372)
9 PRK08997 isocitrate dehydrogen 100.0 8E-101 2E-105 780.2 34.3 326 84-474 1-332 (334)
10 PRK14025 multifunctional 3-iso 100.0 3E-100 6E-105 775.0 33.4 320 86-474 2-328 (330)
11 KOG1526 NADP-dependent isocitr 100.0 5E-101 1E-105 758.2 25.8 396 77-472 10-409 (422)
12 PRK08194 tartrate dehydrogenas 100.0 2E-99 4E-104 775.1 32.6 333 86-474 4-347 (352)
13 TIGR02089 TTC tartrate dehydro 100.0 9.1E-99 2E-103 770.6 32.3 335 86-474 4-350 (352)
14 PRK06451 isocitrate dehydrogen 100.0 1.7E-98 4E-103 779.9 34.2 337 88-474 26-406 (412)
15 PRK09222 isocitrate dehydrogen 100.0 5E-98 1E-102 786.0 34.4 333 84-474 3-339 (482)
16 PLN02329 3-isopropylmalate deh 100.0 4.1E-98 9E-103 774.5 32.1 342 84-474 45-399 (409)
17 TIGR02924 ICDH_alpha isocitrat 100.0 1.2E-97 3E-102 780.7 32.9 330 87-474 2-335 (473)
18 PLN00123 isocitrate dehydrogen 100.0 1.8E-97 4E-102 759.8 33.2 319 86-474 31-357 (360)
19 TIGR00175 mito_nad_idh isocitr 100.0 2.1E-97 5E-102 756.5 33.4 323 86-474 4-331 (333)
20 TIGR00169 leuB 3-isopropylmala 100.0 3.1E-97 7E-102 758.5 34.3 333 87-474 1-347 (349)
21 PRK07006 isocitrate dehydrogen 100.0 2.9E-97 6E-102 771.2 33.0 338 88-474 22-407 (409)
22 TIGR00183 prok_nadp_idh isocit 100.0 7.2E-97 2E-101 770.7 32.9 338 88-474 29-414 (416)
23 PRK00772 3-isopropylmalate deh 100.0 1.7E-96 4E-101 754.9 33.4 336 85-474 2-353 (358)
24 PRK03437 3-isopropylmalate deh 100.0 1.2E-96 3E-101 752.5 32.3 327 86-474 5-342 (344)
25 TIGR02088 LEU3_arch isopropylm 100.0 6.9E-96 2E-100 741.7 33.9 320 88-473 1-322 (322)
26 KOG0785 Isocitrate dehydrogena 100.0 5.3E-96 1E-100 723.6 22.2 324 86-474 36-363 (365)
27 PRK07362 isocitrate dehydrogen 100.0 1.2E-94 2.7E-99 751.6 31.9 338 88-474 31-472 (474)
28 PF00180 Iso_dh: Isocitrate/is 100.0 3.2E-94 6.9E-99 738.2 23.7 335 87-472 1-348 (348)
29 COG0538 Icd Isocitrate dehydro 100.0 6.7E-90 1.5E-94 696.8 28.9 359 88-474 21-404 (407)
30 KOG0784 Isocitrate dehydrogena 100.0 2.2E-81 4.8E-86 626.3 23.3 327 80-473 37-369 (375)
31 KOG0786 3-isopropylmalate dehy 100.0 3.3E-76 7.2E-81 570.9 18.8 341 85-472 4-358 (363)
32 TIGR00178 monomer_idh isocitra 97.4 0.0051 1.1E-07 67.6 16.6 189 253-454 453-652 (741)
33 PF03971 IDH: Monomeric isocit 97.3 0.015 3.2E-07 64.1 17.8 184 252-448 448-641 (735)
34 COG2838 Icd Monomeric isocitra 94.7 0.098 2.1E-06 56.9 7.7 183 254-448 456-647 (744)
35 PLN00123 isocitrate dehydrogen 89.4 0.22 4.8E-06 52.5 2.3 126 204-349 134-272 (360)
36 PF04166 PdxA: Pyridoxal phosp 89.1 0.27 5.8E-06 50.7 2.6 136 260-415 151-296 (298)
37 PRK09222 isocitrate dehydrogen 87.5 0.27 5.9E-06 53.7 1.5 21 203-223 114-134 (482)
38 PRK03371 pdxA 4-hydroxythreoni 87.0 0.46 1E-05 49.6 2.8 141 260-418 177-324 (326)
39 PRK14025 multifunctional 3-iso 86.3 0.77 1.7E-05 48.0 4.0 119 204-340 106-241 (330)
40 TIGR00183 prok_nadp_idh isocit 85.7 0.59 1.3E-05 50.3 2.9 21 203-223 146-166 (416)
41 PRK00232 pdxA 4-hydroxythreoni 85.5 0.93 2E-05 47.5 4.1 142 260-419 178-326 (332)
42 PRK05312 pdxA 4-hydroxythreoni 85.4 0.6 1.3E-05 49.0 2.7 141 260-419 182-331 (336)
43 TIGR00175 mito_nad_idh isocitr 84.9 0.94 2E-05 47.4 3.9 20 204-223 111-130 (333)
44 TIGR00557 pdxA 4-hydroxythreon 84.8 0.67 1.5E-05 48.3 2.7 139 260-417 170-317 (320)
45 COG0538 Icd Isocitrate dehydro 84.8 0.53 1.1E-05 50.0 1.9 31 219-250 126-156 (407)
46 TIGR02088 LEU3_arch isopropylm 84.5 0.67 1.4E-05 48.3 2.5 118 203-340 107-236 (322)
47 PRK03743 pdxA 4-hydroxythreoni 84.5 1.1 2.4E-05 46.9 4.1 142 259-419 177-326 (332)
48 PLN00118 isocitrate dehydrogen 84.2 0.99 2.1E-05 48.0 3.7 20 204-223 150-169 (372)
49 COG0473 LeuB Isocitrate/isopro 84.2 1.2 2.5E-05 46.9 4.1 19 204-222 120-138 (348)
50 PRK06451 isocitrate dehydrogen 84.1 0.69 1.5E-05 49.8 2.5 20 203-222 141-160 (412)
51 COG1995 PdxA Pyridoxal phospha 83.8 1.1 2.5E-05 46.7 3.8 55 357-418 269-324 (332)
52 PRK01909 pdxA 4-hydroxythreoni 83.7 1.2 2.7E-05 46.5 4.1 142 259-419 172-322 (329)
53 PRK02746 pdxA 4-hydroxythreoni 83.2 1.3 2.9E-05 46.6 4.1 146 260-419 180-339 (345)
54 PRK07006 isocitrate dehydrogen 82.8 0.89 1.9E-05 48.9 2.7 20 203-222 139-158 (409)
55 PRK07362 isocitrate dehydrogen 82.6 0.88 1.9E-05 49.6 2.6 21 203-223 148-168 (474)
56 PRK08997 isocitrate dehydrogen 82.5 0.9 2E-05 47.6 2.6 127 203-349 110-251 (334)
57 PRK03437 3-isopropylmalate deh 81.6 1.1 2.3E-05 47.2 2.7 19 203-221 121-139 (344)
58 PRK08299 isocitrate dehydrogen 81.6 1.6 3.6E-05 46.8 4.1 61 202-265 92-161 (402)
59 PRK03946 pdxA 4-hydroxythreoni 81.0 1.3 2.8E-05 46.0 3.0 82 325-419 221-303 (307)
60 PF00180 Iso_dh: Isocitrate/is 80.8 0.98 2.1E-05 47.4 2.1 120 204-340 121-257 (348)
61 TIGR02924 ICDH_alpha isocitrat 80.4 1.6 3.4E-05 47.8 3.6 21 203-223 110-130 (473)
62 PRK00772 3-isopropylmalate deh 79.3 1.3 2.8E-05 46.9 2.4 121 203-342 127-263 (358)
63 PRK08194 tartrate dehydrogenas 79.1 1.4 3.1E-05 46.4 2.7 128 203-350 123-265 (352)
64 TIGR00169 leuB 3-isopropylmala 78.1 1.1 2.4E-05 47.2 1.5 20 203-222 124-143 (349)
65 KOG0785 Isocitrate dehydrogena 77.0 1.7 3.6E-05 45.3 2.4 20 204-223 144-163 (365)
66 TIGR02089 TTC tartrate dehydro 76.5 1.9 4E-05 45.6 2.7 20 203-222 125-144 (352)
67 PLN02329 3-isopropylmalate deh 75.5 1.4 3.1E-05 47.3 1.5 19 203-221 171-189 (409)
68 KOG0784 Isocitrate dehydrogena 75.0 2.1 4.5E-05 45.0 2.4 114 204-340 150-281 (375)
69 TIGR00178 monomer_idh isocitra 56.7 35 0.00076 38.7 7.5 116 212-329 177-299 (741)
70 PF03971 IDH: Monomeric isocit 49.1 28 0.00061 39.4 5.3 115 210-326 171-292 (735)
71 COG0655 WrbA Multimeric flavod 47.8 1E+02 0.0022 29.5 8.4 76 94-183 13-100 (207)
72 KOG3974 Predicted sugar kinase 47.3 54 0.0012 33.9 6.5 112 263-417 114-246 (306)
73 TIGR00127 nadp_idh_euk isocitr 38.9 17 0.00036 39.4 1.6 19 204-222 141-160 (409)
74 PF03358 FMN_red: NADPH-depend 37.9 58 0.0013 29.0 4.8 82 87-184 2-96 (152)
75 PRK10569 NAD(P)H-dependent FMN 37.4 1.5E+02 0.0032 28.4 7.7 84 87-184 2-92 (191)
76 TIGR03567 FMN_reduc_SsuE FMN r 27.4 3.3E+02 0.0071 25.2 8.1 83 88-184 2-91 (171)
77 PF12953 DUF3842: Domain of un 24.4 65 0.0014 29.7 2.6 34 87-125 1-36 (131)
78 PRK03371 pdxA 4-hydroxythreoni 24.0 61 0.0013 34.1 2.7 22 84-105 1-24 (326)
79 PLN03065 isocitrate dehydrogen 23.8 41 0.00089 37.2 1.5 66 199-267 159-232 (483)
80 PLN00103 isocitrate dehydrogen 22.9 41 0.00089 36.5 1.2 15 203-217 153-167 (410)
81 TIGR03566 FMN_reduc_MsuE FMN r 22.8 4.6E+02 0.0099 24.2 8.1 82 87-184 1-94 (174)
82 PRK00232 pdxA 4-hydroxythreoni 20.8 82 0.0018 33.3 2.9 22 84-105 3-26 (332)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.4e-121 Score=960.01 Aligned_cols=453 Identities=83% Similarity=1.302 Sum_probs=412.6
Q ss_pred hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhcccccccceeecccEEEEcCCCcHH
Q 011846 20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR 98 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi~GDGIGp 98 (476)
..+...|+++++++..||.++..+.+ +.|++.+ .+..........++.-|++++..+.+||+|.+|||+|+||||||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r 90 (483)
T PLN03065 13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR 90 (483)
T ss_pred chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence 33456788889999999999988865 4555433 34333444444455667776655568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccccccCCCCcchhHh
Q 011846 99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR 178 (476)
Q Consensus 99 EI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~~~~~~~s~n~~LR 178 (476)
+||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++||++||+||||++||+++|+++|+++++|+|||++||
T Consensus 91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR 170 (483)
T PLN03065 91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR 170 (483)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred hhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeeeeeeeecCCceEEE
Q 011846 179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258 (476)
Q Consensus 179 k~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~g~~~~~~~~va~~ 258 (476)
++||||+|+|||+|+++|+++|||++||+|+||||||+|+++|+...+++++.++|+|||||++.-..+.++..++++++
T Consensus 171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~ 250 (483)
T PLN03065 171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA 250 (483)
T ss_pred HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998745444444566788988
Q ss_pred EEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhC
Q 011846 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS 338 (476)
Q Consensus 259 ~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~ 338 (476)
+++|+++++||+|+||+||++|+++||++||+||||.|||+|+++|+|||+++|+++|.+.+|+|+|+|||+||||||++
T Consensus 251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~ 330 (483)
T PLN03065 251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS 330 (483)
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred CCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHH
Q 011846 339 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (476)
Q Consensus 339 P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~ 418 (476)
|++|||||+|||||||||++|+++|||||+||+|+|+++++++|||+||||||||++||+||+++|||+|+||||+|||+
T Consensus 331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~ 410 (483)
T PLN03065 331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 410 (483)
T ss_pred CCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865799999999999999999999967999999999999999
Q ss_pred HhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCC-----CCccCchhhhhcccc
Q 011846 419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-----PKYILPSPYLLHVIT 474 (476)
Q Consensus 419 hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~-----~~~~~~~~~~~~~i~ 474 (476)
|+|++|+|+.+.++|++||+||.+++++|++|+|||.+.+| .+...|++|+++|+.
T Consensus 411 hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~ 471 (483)
T PLN03065 411 HRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDAVAQ 471 (483)
T ss_pred HhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999844433 346889999999873
No 2
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=3.5e-110 Score=863.59 Aligned_cols=384 Identities=68% Similarity=1.113 Sum_probs=361.3
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+||+|.+|+|+|+||+|.+.+|+.++++|+.|+++++|+++|+|.+++++||+++|++++++||++|++||||++||.+.
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
++.++.++++|+|+|++||+.||||||+|||++|+|++++|||++||+++||||||+| +++|++++||||
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y----------~~iD~vivREnt 150 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQY----------RATDFVVPGPGK 150 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCc----------CceEEEEecCCe
Confidence 5567778889999999999999999999999899999999999999999999999999 489999999999
Q ss_pred -CCCeeeeeeeec-----------CCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHH
Q 011846 240 -TGPVELDVYNFK-----------GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQV 307 (476)
Q Consensus 240 -eG~~Y~g~~~~~-----------~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~ev 307 (476)
|| +|+|.++.. ++++++++++|+++++||+|+||+||++|+++||+|||+||||.+||+|+++|+||
T Consensus 151 ~Eg-~Y~g~e~~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~ev 229 (409)
T TIGR00127 151 LEL-VYKPKDGTQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEV 229 (409)
T ss_pred eeE-EEECCCCCcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHH
Confidence 99 999987621 24678778899999999999999999999889999999999999999999999999
Q ss_pred HHhhhccccccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccc
Q 011846 308 YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHG 387 (476)
Q Consensus 308 a~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HG 387 (476)
|+++||++|.+++|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++++|||||+||
T Consensus 230 a~~eYp~~~~~~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HG 309 (409)
T TIGR00127 230 YEAQYKSKFEALGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHG 309 (409)
T ss_pred HHHhCcccccCCCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccC
Confidence 75699999999999999999999999999999999999999999999999999999999999999999987789999999
Q ss_pred ccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCccc----CcccC-CCCc
Q 011846 388 TVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL----AILVH-GPKY 462 (476)
Q Consensus 388 SAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL----gG~~~-~~~~ 462 (476)
||||++++|||||+.+|||+|+|||++|||+|+|+++.|+++.++|++|++||.+++++|.+|+|| ||+.. .++.
T Consensus 310 SApdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~GG~~~~~~~~ 389 (409)
T TIGR00127 310 TVTRHYRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILGGSPVERSAY 389 (409)
T ss_pred CCcccchhhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccCCCcccCCCC
Confidence 999999999999754999999999999999999988888899999999999999999999999999 77533 3567
Q ss_pred cCchhhhhcccc
Q 011846 463 ILPSPYLLHVIT 474 (476)
Q Consensus 463 ~~~~~~~~~~i~ 474 (476)
..|++|+++||.
T Consensus 390 ~~T~e~~daV~~ 401 (409)
T TIGR00127 390 LNTEEFIDAVEE 401 (409)
T ss_pred cCHHHHHHHHHH
Confidence 889999999974
No 3
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-109 Score=855.33 Aligned_cols=384 Identities=68% Similarity=1.109 Sum_probs=359.2
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
.||+|.+|+|.|.||+|.+.+|+.++++|+.++++++|+++|+|.+++++||+++|++++++||++||+||||++||.++
T Consensus 4 ~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~ 83 (413)
T PTZ00435 4 GKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEA 83 (413)
T ss_pred ccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
++.+++|+++|+|+|++||+.||||||+|||+||+||+++|||++||+++||||||+| +++|++++||||
T Consensus 84 ~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y----------~~id~vi~rent 153 (413)
T PTZ00435 84 RVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQY----------KATDFVVDGPGK 153 (413)
T ss_pred cccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCc----------CceEEEEecCCE
Confidence 5567888999999999999999999999998899999999999999999999999999 489999999999
Q ss_pred -CCCeeeee-ee---------ecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHH
Q 011846 240 -TGPVELDV-YN---------FKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVY 308 (476)
Q Consensus 240 -eG~~Y~g~-~~---------~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva 308 (476)
|+ +|.+. ++ +..+++++++++|+++++||+|+||+||++|+++||+|||+||||.+||||+++|+|||
T Consensus 154 ~e~-~y~~~~g~~~~~~~~~~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva 232 (413)
T PTZ00435 154 LEL-VFTPADGSEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIY 232 (413)
T ss_pred EEE-EEecCCCCcceeeeeeccCCCCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHH
Confidence 88 99987 32 13467787789999999999999999999998899999999999999999999999999
Q ss_pred HhhhccccccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccc
Q 011846 309 EERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGT 388 (476)
Q Consensus 309 ~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGS 388 (476)
+++||++|.+++|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||
T Consensus 233 ~~eYpe~~~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGS 312 (413)
T PTZ00435 233 DEEYKAKFEKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGT 312 (413)
T ss_pred HHhCccccccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCC
Confidence 66799999999999999999999999999999999999999999999999999999999999999998622589999999
Q ss_pred cccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccC----ccc--CCCCc
Q 011846 389 VTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLA----ILV--HGPKY 462 (476)
Q Consensus 389 APd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg----G~~--~~~~~ 462 (476)
||||+++||+||+++|||+|+|||++|||+|+|++++|+.+.++|++|++||.+++++|.+|+||| |+. ..++.
T Consensus 313 Apdi~~~~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~ 392 (413)
T PTZ00435 313 VTRHYRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDY 392 (413)
T ss_pred ccccchhhhcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCC
Confidence 999999999997549999999999999999999999999999999999999999999999999997 642 23457
Q ss_pred cCchhhhhcccc
Q 011846 463 ILPSPYLLHVIT 474 (476)
Q Consensus 463 ~~~~~~~~~~i~ 474 (476)
..|++|+++|+.
T Consensus 393 ~~T~e~~daV~~ 404 (413)
T PTZ00435 393 LNTEEFIDKVAE 404 (413)
T ss_pred cCHHHHHHHHHH
Confidence 889999999873
No 4
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.4e-106 Score=833.10 Aligned_cols=389 Identities=67% Similarity=1.112 Sum_probs=344.3
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
.||||++||++|||||||||||+++++++.+++++|+|+++++|.++++++|+++|++++++||++|++||||++||.++
T Consensus 2 ~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~ 81 (402)
T PRK08299 2 AKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEA 81 (402)
T ss_pred CccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
++.+++++++++|+|++|||.||||+|+|||.||++|+++||+++||+|+||||||+|.|+|+...+ +.-..+..||+
T Consensus 82 ~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r--~~~~~~~~~~~ 159 (402)
T PRK08299 82 RVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPG--KGKLTLVFTGE 159 (402)
T ss_pred cccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEecc--CccceeeeecC
Confidence 4444444567899999999999999999998789999999999999999999999999877654322 11223344777
Q ss_pred CCCeeeeeeee----cCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccc
Q 011846 240 TGPVELDVYNF----KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (476)
Q Consensus 240 eG~~Y~g~~~~----~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~ 315 (476)
+| . .+++. .+.+++...++|+++++||+|+||+||++|+++||+|||+||||.+||||+++|+|||+++||+.
T Consensus 160 ~g-~--~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~ 236 (402)
T PRK08299 160 DG-E--PIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEK 236 (402)
T ss_pred CC-c--cccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccc
Confidence 76 2 22222 11244443469999999999999999999988999999999999999999999999995589988
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc
Q 011846 316 FEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (476)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~ 395 (476)
|.+.+|++++++||++|||||++|++|||||+|||||||||++|+++||||++||+|+|+++.+.||||+||||||||++
T Consensus 237 ~~~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~ 316 (402)
T PRK08299 237 FEAAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQ 316 (402)
T ss_pred cccCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999886335999999999999999
Q ss_pred ccCCCCCc-cCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCC-CccCchhhhhccc
Q 011846 396 HQKGQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP-KYILPSPYLLHVI 473 (476)
Q Consensus 396 ~IaGk~~i-ANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~-~~~~~~~~~~~~i 473 (476)
+||||| + |||+|||||++|||+|||++++|+.+.++|++|++||.+++++|.+|+|||+...+. .-..|++|+++||
T Consensus 317 ~IaGk~-~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~~g~~tT~e~~daIi 395 (402)
T PRK08299 317 HQKGEE-TSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPDQKWLTTEEFLDAID 395 (402)
T ss_pred cccCCC-CccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCCCCCcCHHHHHHHHH
Confidence 999999 8 999999999999999999999999999999999999999999999999996322122 3457999999987
Q ss_pred c
Q 011846 474 T 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 396 ~ 396 (402)
T PRK08299 396 E 396 (402)
T ss_pred H
Confidence 4
No 5
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-105 Score=831.19 Aligned_cols=393 Identities=77% Similarity=1.259 Sum_probs=350.6
Q ss_pred ccceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 79 ~~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
+.||||++|+|+|+|||||||+|+++++++++++++|+|+++|+|.+++++||+++|++++++|+++|++||||++||.+
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~ 82 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
.++.+++.++.|+|+|++||+.||||+|+|||+||++|++.|||.+|+++.||+.+|.|.++|+..++++++|+||||||
T Consensus 83 ~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivREN 162 (410)
T PLN00103 83 ARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEG 162 (410)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecC
Confidence 33333344567899999999999999999998789999999999999999999999999999997677789999999999
Q ss_pred CCCCeeeeeee--ecC-CceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccc
Q 011846 239 GTGPVELDVYN--FKG-PGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (476)
Q Consensus 239 teG~~Y~g~~~--~~~-~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~ 315 (476)
||| +| +... +.+ .+++...++|+++++||+|+||+||++|+++||++||+||||.+||+|+++|+||++++|.++
T Consensus 163 TEg-~y-e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~e 240 (410)
T PLN00103 163 KDE-KT-ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240 (410)
T ss_pred CCc-ee-EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhh
Confidence 999 88 3211 111 233333445999999999999999999988899999999999999999999999996544444
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc
Q 011846 316 FEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (476)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~ 395 (476)
|.+++|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++...||||+||||||||+.
T Consensus 241 yp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~HGSApd~~~~ 320 (410)
T PLN00103 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (410)
T ss_pred CCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCCCcCcccchh
Confidence 44557999999999999999999999999999999999999999999999999999999886446899999999986555
Q ss_pred -ccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccC-----cccCCCCccCchhhh
Q 011846 396 -HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLA-----ILVHGPKYILPSPYL 469 (476)
Q Consensus 396 -~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLg-----G~~~~~~~~~~~~~~ 469 (476)
.|+||| +|||+|+|||++|||+|++..|+|.++.++|++|++||.+++++|.+|+||+ |.....+.+.|++|+
T Consensus 321 ~diaGk~-iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~~T~Dl~~~~~gg~~~~~~~~~T~e~~ 399 (410)
T PLN00103 321 HQKGGET-STNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGKMTKDLALLIHGPKVSRDQYLNTEEFI 399 (410)
T ss_pred hhhcCCC-ccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCCCCcccccccCCCcccCCCCcCHHHHH
Confidence 389999 9999999999999999999999999999999999999999999999999995 322223457899999
Q ss_pred hcccc
Q 011846 470 LHVIT 474 (476)
Q Consensus 470 ~~~i~ 474 (476)
++|+.
T Consensus 400 daV~~ 404 (410)
T PLN00103 400 DAVAE 404 (410)
T ss_pred HHHHH
Confidence 99874
No 6
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=3.5e-105 Score=818.37 Aligned_cols=377 Identities=32% Similarity=0.451 Sum_probs=354.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHhcCCCcee-EEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccccc
Q 011846 89 VEMDGDEMTRIIWQMIKDKLIFPYLDLD-IKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (476)
Q Consensus 89 ~vi~GDGIGpEI~~a~~~~l~~~~~~i~-~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~~~ 167 (476)
|.|+||+|++.||+.++++|+.|+++++ |+|||+|.++||+|+++++-|+++++++++|++|||++||+++|+++|+||
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 7899999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHhhhcCc-EEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeeee
Q 011846 168 SMWRSPNGTIRNILNG-TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELD 246 (476)
Q Consensus 168 ~~~~s~n~~LRk~Ldl-yanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~g 246 (476)
++|+|||++||+.||+ +++++||+|+++| |||++||+|+||+++|||++ |++.++|+.+.++|++++++.+.-..
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~ 157 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVD 157 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEE
Confidence 9999999999999999 9999999999996 99999999999999999999 99999999999999999886557778
Q ss_pred eeeec-CCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc-----CC
Q 011846 247 VYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE-----HS 320 (476)
Q Consensus 247 ~~~~~-~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~-----~~ 320 (476)
+++|+ +++++++++||.++++||||+||+||++|+++||+|||+||||+++|||+ +|+||++++|+++|++ ++
T Consensus 158 ~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 158 DRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 88886 57899999999999999999999999999989999999999999999998 9999997799988888 67
Q ss_pred eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCC--Cc-eeeeeccccccccccccc
Q 011846 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD--GK-TLEAEAAHGTVTRHFRLH 396 (476)
Q Consensus 321 I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~--~a-~~~fEp~HGSAPd~~~~~ 396 (476)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +.+|||+|||||||+++|
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~ 316 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEAR 316 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhh
Confidence 8899999999999999999999 9999999999999999999999999999999955 53 369999999999999999
Q ss_pred cCCCCCccCcHhHHHHHHHHHHHhcccccch-hHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNE-RLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 397 IaGk~~iANPiA~IlS~amML~hlg~~d~~~-~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
++||+++|||+|+||||+|||+|+++++++. .+.++|++||+||.+++++|.+|+||+|.. -+.|++|+++|+.
T Consensus 317 ~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~g~~----~~tT~ef~daI~~ 391 (393)
T PLN00096 317 LRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLCGAG----GLTTEQFIDAVAE 391 (393)
T ss_pred hcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCCCCC----CCCHHHHHHHHHH
Confidence 9999669999999999999999998877654 678999999999999999999999997621 1478999999874
No 7
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-105 Score=803.31 Aligned_cols=333 Identities=21% Similarity=0.221 Sum_probs=302.7
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcC---CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~---~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
+.++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||.++|+|+++.|+++|++||||+|+|..
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~-- 79 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKW-- 79 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCC--
Confidence 4578999999999999999999988654 38999999999999999999999999999999999999999999963
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
.. ...+++|++++|||+||||||+||+ |++ |++++|+ .+++|+||||||||
T Consensus 80 -~~--~~~~~~~~ll~lRk~l~lyANlRP~--k~~----~~~k~~~--------------------~~~~D~viVREnTe 130 (348)
T COG0473 80 -DP--LPRPERGLLLALRKELDLYANLRPA--KSL----PGLKSPL--------------------VKGVDIVIVRENTE 130 (348)
T ss_pred -CC--CCCcccchHHHHHHhcCceeeeeec--ccC----CCCCCcc--------------------CCCccEEEEeeCCC
Confidence 21 1256788899999999999999998 544 6777763 15899999999999
Q ss_pred CCeeeeeeee-cCCc-eE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 241 GPVELDVYNF-KGPG-IA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 241 G~~Y~g~~~~-~~~~-va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
| +|+|.++. ..++ ++ ++++|||+++|||+|+|||+|++| ++|||+|||+|||+.+||||+++|+||+ ++||
T Consensus 131 G-~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP--- 205 (348)
T COG0473 131 G-LYFGEEGRILGGGEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP--- 205 (348)
T ss_pred c-cccCCCccccCCCeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC---
Confidence 9 99999883 3333 77 779999999999999999999999 7999999999999999999999999999 7999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~ 395 (476)
+|+++|+|||+++||||++|++| ||||+|||||||||+||+++|||||+||+|+|++....||||+||||||
T Consensus 206 ---dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD---- 278 (348)
T COG0473 206 ---DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD---- 278 (348)
T ss_pred ---CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc----
Confidence 99999999999999999999999 9999999999999999999999999999999996324599999999999
Q ss_pred ccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHc-CCCCcccCcccCCCCccCchhhhhcccc
Q 011846 396 HQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVET-GKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 396 ~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~-G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+|+|+++ +|++|++||++++++ |.+|+||||..+ |++|+++|+.
T Consensus 279 -IAGkg-iANPiA~IlS~aMML~~~g~~~-------~A~~Ie~Av~~vl~~~g~~T~Dlgg~~~------T~e~~d~I~~ 343 (348)
T COG0473 279 -IAGKG-IANPIATILSAAMMLRHLGEKE-------AADAIENAVEKVLAEGGIRTPDLGGNAT------TSEVGDAIAK 343 (348)
T ss_pred -ccCCC-ccChHHHHHHHHHHHHHhCCch-------HHHHHHHHHHHHHHcCCCCCcccCCCcc------HHHHHHHHHH
Confidence 99999 9999999999999999999654 999999999999995 689999999886 6888887763
No 8
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.1e-101 Score=790.14 Aligned_cols=326 Identities=23% Similarity=0.236 Sum_probs=300.9
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcccccc
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEF 164 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~ 164 (476)
.++|++||||||||||+++++++|.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+
T Consensus 41 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~------ 114 (372)
T PLN00118 41 PITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIG------ 114 (372)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCcc------
Confidence 36899999999999999999999987789999999999999999999999999999999999999999999952
Q ss_pred ccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCee
Q 011846 165 GLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (476)
Q Consensus 165 ~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y 244 (476)
..++|+|++|||+||||+|+||| |++ ||+++|+ +++|+||||||||| +|
T Consensus 115 ---~~~~s~~~~LRk~ldLyaNvRPv--r~~----pg~~~~~---------------------~~iD~vIVREnteG-~Y 163 (372)
T PLN00118 115 ---KGHRSLNLTLRKELGLYANVRPC--YSL----PGYKTRY---------------------DDVDLVTIRENTEG-EY 163 (372)
T ss_pred ---ccccCchHHHHHHcCCeeeeccc--ccC----CCccCcc---------------------cCceEEEEEecCCC-cc
Confidence 13578899999999999999997 554 5666652 48999999999999 99
Q ss_pred eeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeE
Q 011846 245 LDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (476)
Q Consensus 245 ~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~ 322 (476)
+|.++...++++ +.+++|++++|||+|+||+||++|+ |+||++||+||||.|||||+++|+||+ ++|| +|+
T Consensus 164 ~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------dI~ 236 (372)
T PLN00118 164 SGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------EIV 236 (372)
T ss_pred cceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------Cce
Confidence 999765556777 5699999999999999999999995 679999999999999999999999999 5899 999
Q ss_pred EeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCC
Q 011846 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQE 401 (476)
Q Consensus 323 ~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~ 401 (476)
++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ..||||+|||||| |||||
T Consensus 237 ~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPd-----IAGk~ 310 (372)
T PLN00118 237 YEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPD-----IAGKN 310 (372)
T ss_pred EEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhh-----hCCCC
Confidence 99999999999999999999 99999999999999999999999999999999986 3599999999999 99999
Q ss_pred CccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhcccc
Q 011846 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 402 ~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+|||+|||||++|||+|+|+ .++|++|++||.+++++| .+|+||||++ .|++|+++||.
T Consensus 311 -iANP~A~IlS~amML~~lG~-------~~~A~~I~~Av~~~l~~G~~~T~DlGG~~------sT~e~~dav~~ 370 (372)
T PLN00118 311 -LANPTALLLSAVMMLRHLKL-------NEQAEQIHNAILNTIAEGKYRTADLGGSS------TTTDFTKAICD 370 (372)
T ss_pred -CcCcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccCCCc------CHHHHHHHHHh
Confidence 99999999999999999994 569999999999999999 6999999975 46999999874
No 9
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-101 Score=780.25 Aligned_cols=326 Identities=20% Similarity=0.228 Sum_probs=298.5
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccc
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~ 163 (476)
|.++|++|||||||||||++++++|.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+ +
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~---~- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVG---E- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCC---c-
Confidence 557899999999999999999999976788999999999999999999999999999999999999999999952 1
Q ss_pred cccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCe
Q 011846 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (476)
Q Consensus 164 ~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~ 243 (476)
.++|++++|||+||||+|+||+ |++ ||+++|+ +++|+||||||||| +
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~--k~~----~g~~~~~---------------------~~iD~vivREnteG-~ 123 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPV--LSF----PGTKARY---------------------DNIDIITVRENTEG-M 123 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeec--ccC----CCCCCcc---------------------CCcCEEEEEeccCc-e
Confidence 2467899999999999999997 555 5666662 48999999999999 9
Q ss_pred eeeeeeec-C-CceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccC
Q 011846 244 ELDVYNFK-G-PGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (476)
Q Consensus 244 Y~g~~~~~-~-~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~ 319 (476)
|+|.++.. . +.++ +.+++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+||| ++||
T Consensus 124 Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------ 196 (334)
T PRK08997 124 YSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------ 196 (334)
T ss_pred ecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------
Confidence 99987642 2 2366 6699999999999999999999995 679999999999999999999999999 5999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 320 ~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia 398 (476)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++.+ +|||+|||||| ||
T Consensus 197 ~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~~a--~FEp~HGSAPd-----IA 269 (334)
T PRK08997 197 DIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRDAA--IFEAVHGSAPD-----IA 269 (334)
T ss_pred CeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCCce--EEECCCCchhh-----hC
Confidence 99999999999999999999999 999999999999999999999999999999998864 89999999999 99
Q ss_pred CCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC-CCcccCcccCCCCccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|+ +|+||||.+ +|++|+++||.
T Consensus 270 Gk~-iANP~a~IlS~amML~~lG~-------~~~A~~i~~AV~~vl~~G~~~T~DlGG~a------~T~e~~~av~~ 332 (334)
T PRK08997 270 GKN-LANPTSVILAAIQMLEYLGM-------PDKAERIRKAIVAVIEAGDRTTRDLGGTH------GTTDFTQAVID 332 (334)
T ss_pred CCC-ccCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCccCcccCCCc------CHHHHHHHHHh
Confidence 999 99999999999999999995 4589999999999999995 799999965 47999999874
No 10
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=3e-100 Score=774.96 Aligned_cols=320 Identities=22% Similarity=0.208 Sum_probs=297.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
++|++||||||||||+++++++|.+.+++++|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 479999999999999999999998778999999999999999999999999999999999999999999984
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
.+++++|||+||||+|+||+ |++ ||+++|+ +++|+||||||||| +|+
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~----pg~~~~~---------------------~~iD~vivREnteG-~Y~ 120 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSY----KGVKCLY---------------------PDIDYVIVRENTEG-LYK 120 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecC----CCCCCcc---------------------CCcCEEEEEECCCc-eec
Confidence 35689999999999999998 555 5665651 48999999999999 999
Q ss_pred eeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC----C-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccC
Q 011846 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK----K-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (476)
Q Consensus 246 g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r----~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~ 319 (476)
|.++...++++ +++++|+++++||+|+||+||++| + ++||++||+||||.+||||+++|+||| ++||
T Consensus 121 g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp------ 193 (330)
T PRK14025 121 GIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP------ 193 (330)
T ss_pred CcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC------
Confidence 99876556777 569999999999999999999999 4 579999999999999999999999999 6999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 320 ~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia 398 (476)
+|+++|++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++++ ||||+|||||| ||
T Consensus 194 ~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~~a--~FEp~HGSAPd-----iA 266 (330)
T PRK14025 194 DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDKYG--LFEPVHGSAPD-----IA 266 (330)
T ss_pred CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCCcc--eeEcCCCCchh-----hC
Confidence 99999999999999999999999 999999999999999999999999999999998865 89999999999 99
Q ss_pred CCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|++|+||||.+ +|++|+++||.
T Consensus 267 Gk~-iANP~a~IlS~ammL~~lG~-------~~~A~~I~~Av~~vl~~g~~T~DlGG~~------~T~e~~~av~~ 328 (330)
T PRK14025 267 GKG-IANPTATILTAVLMLRHLGE-------NEEADKVEKALEEVLALGLTTPDLGGNL------STMEMAEEVAK 328 (330)
T ss_pred CCC-CcCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccCCCc------CHHHHHHHHHH
Confidence 999 99999999999999999995 4599999999999999999999999965 47999999874
No 11
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.7e-101 Score=758.16 Aligned_cols=396 Identities=73% Similarity=1.244 Sum_probs=383.4
Q ss_pred ccccceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCC
Q 011846 77 TGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITP 156 (476)
Q Consensus 77 ~~~~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP 156 (476)
..++||+|.+|||.|+||+|++.||+.++++|+.|+++++++|||+|.+++|+|+++++.|+.+++++++|++|||+.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 33679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEec
Q 011846 157 DETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (476)
Q Consensus 157 ~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivR 236 (476)
+++|+++|++++||+|||++||++|+++++++||||+++||++|||.+||+|+||+++|||+++|+..++|+++.+++.+
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCeeeeeeeecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 237 EDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 237 EnteG~~Y~g~~~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
..+..+.-..+++|+++|++..+++|.++++.+|+.+|+||.++++++++.+|++|||.|||.|++||+|+++++|+.+|
T Consensus 170 ~dg~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kf 249 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKF 249 (422)
T ss_pred CCCCcceeEEEEecCCCceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 77655577778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 396 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~ 396 (476)
++.+|||||++||+|++|++|+-++|||+|+|++||++||+.||.+||||||+|..++|||.+++.|++|||+.+|||+|
T Consensus 250 e~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~h 329 (422)
T KOG1526|consen 250 EALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMH 329 (422)
T ss_pred HhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCC----CCccCchhhhhcc
Q 011846 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG----PKYILPSPYLLHV 472 (476)
Q Consensus 397 IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~----~~~~~~~~~~~~~ 472 (476)
+.|++|++||||+|+||...|.|+|++|+|+.|..+++.||+|+..++++|+||+||+.+.+| +..+-|++|+++|
T Consensus 330 qkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g~~~r~~y~~T~eFidav 409 (422)
T KOG1526|consen 330 QKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHGKVERSDYLNTEEFIDAV 409 (422)
T ss_pred hcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcCCccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887765 5688999999886
No 12
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=2e-99 Score=775.09 Aligned_cols=333 Identities=17% Similarity=0.190 Sum_probs=297.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC-----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~-----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
++|++||||||||||+++++++|.+. +++++|+++++|.++++++|+++|++++++||++|++||||+++|..
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~-- 81 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKL-- 81 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCc--
Confidence 57999999999999999999888532 58999999999999999999999999999999999999999999952
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
.++ ..+.++++++|||+||||+|+||+ |++ |++++|+ +.++++|+||||||||
T Consensus 82 ~~~---~~~~~~~~l~LR~~ldLyaNvRP~--k~~----pg~~spl------------------k~~~~iD~vivREnte 134 (352)
T PRK08194 82 VPD---HISLWGLLIKIRREFEQVINIRPA--KQL----RGIKSPL------------------ANPKDFDLLVVRENSE 134 (352)
T ss_pred CCC---CCCchhhHHHHHHHcCCEEEEEee--ecC----CCCCCCC------------------CCCCCCCEEEEEeCCC
Confidence 111 123344589999999999999998 555 5666773 2236899999999999
Q ss_pred CCeeeeeeeec---CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 241 GPVELDVYNFK---GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 241 G~~Y~g~~~~~---~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
| +|+|.++.. ..++| +++++|++++|||+|+||+||++|+++||+|||+|||+.+||||+++|+||| ++||
T Consensus 135 G-~Y~g~~~~~~~g~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp--- 209 (352)
T PRK08194 135 G-EYSEVGGRIHRGEDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP--- 209 (352)
T ss_pred c-cccCCCccccCCccceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC---
Confidence 9 999986432 23456 6799999999999999999999998899999999999999999999999999 6999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCc-eeeeeccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFR 394 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a-~~~fEp~HGSAPd~~~ 394 (476)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ..||||+||||||
T Consensus 210 ---~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPd--- 283 (352)
T PRK08194 210 ---EIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD--- 283 (352)
T ss_pred ---CceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchh---
Confidence 99999999999999999999999 999999999999999999999999999999997642 3599999999999
Q ss_pred cccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 395 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 395 ~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|.+|+||||++ .|++|+++||.
T Consensus 284 --iAGk~-iANP~a~IlS~amML~~lg~-------~~~A~~i~~Av~~~l~~g~~T~DlGG~~------~T~e~~~ai~~ 347 (352)
T PRK08194 284 --IAGKG-IANPIGQIWTAKLMLDHFGE-------EELGSHLLDVIEDVTEDGIKTPDIGGRA------TTDEVTDEIIS 347 (352)
T ss_pred --hCCCC-cCCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCCcCcCCCCc------CHHHHHHHHHH
Confidence 99999 99999999999999999995 5699999999999999999999999965 46999999874
No 13
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=9.1e-99 Score=770.62 Aligned_cols=335 Identities=20% Similarity=0.210 Sum_probs=297.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC-----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~-----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|.+
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~-- 81 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPAL-- 81 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCC--
Confidence 57999999999999999999888532 48999999999999999999999999999999999999999999953
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
.+. ....++++++|||+||||+|+||+ |++| ++.+|+ +. ..++++|+||||||||
T Consensus 82 ~~~---~~~~~~~~l~LRk~ldLyaNvRP~--~~~~----g~~sp~-----------k~-----~~~~~iD~vivREnte 136 (352)
T TIGR02089 82 VPD---HISLWGLLLKIRREFDQYANVRPA--KLLP----GVTSPL-----------RN-----CGPGDFDFVVVRENSE 136 (352)
T ss_pred CCC---ccCchhhHHHHHHHcCCeEEEEEe--ecCC----CCCCcc-----------cc-----ccCCCCCEEEEEecCC
Confidence 111 122355689999999999999997 6554 555662 10 0135899999999999
Q ss_pred CCeeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccc
Q 011846 241 GPVELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (476)
Q Consensus 241 G~~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~ 315 (476)
| +|+|.++.. ..++| +++++|++++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++||
T Consensus 137 G-~Y~G~~~~~~~~~~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp-- 212 (352)
T TIGR02089 137 G-EYSGVGGRIHRGTDEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP-- 212 (352)
T ss_pred c-ccccccccccCCccceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC--
Confidence 9 999986432 12466 6699999999999999999999998889999999999999999999999999 6999
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCc-eeeeecccccccccc
Q 011846 316 FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHF 393 (476)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a-~~~fEp~HGSAPd~~ 393 (476)
+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ..||||+||||||
T Consensus 213 ----~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPd-- 286 (352)
T TIGR02089 213 ----DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPD-- 286 (352)
T ss_pred ----CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchh--
Confidence 99999999999999999999999 999999999999999999999999999999997642 3589999999999
Q ss_pred ccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhccc
Q 011846 394 RLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVI 473 (476)
Q Consensus 394 ~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i 473 (476)
||||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|.+|+||||.+ .|++|+++||
T Consensus 287 ---iAGk~-iANP~a~Ils~amML~~lg~-------~~~A~~I~~Av~~~l~~g~~T~DlGG~~------sT~e~~~ai~ 349 (352)
T TIGR02089 287 ---IAGKG-IANPIGAIWTAAMMLEHLGE-------KEAGAKIMDAIERVTAAGILTPDVGGKA------TTSEVTEAVC 349 (352)
T ss_pred ---hcCCC-ccCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCccCCCCCCc------CHHHHHHHHH
Confidence 99999 99999999999999999994 5699999999999999999999999864 4799999987
Q ss_pred c
Q 011846 474 T 474 (476)
Q Consensus 474 ~ 474 (476)
.
T Consensus 350 ~ 350 (352)
T TIGR02089 350 N 350 (352)
T ss_pred h
Confidence 4
No 14
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-98 Score=779.88 Aligned_cols=337 Identities=21% Similarity=0.261 Sum_probs=298.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||++||.+
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~-- 103 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG-- 103 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC--
Confidence 999999999999999999888521 26999999999999999999999999999999999999999999953
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
+.|+|+|++|||+||||+|+||| |++ ||+.+|+ +.++++|+||||||||
T Consensus 104 -------~~~~s~~l~LRk~ldLyaNvRPv--k~~----pgl~sp~------------------~~~~~iD~vIvREnTe 152 (412)
T PRK06451 104 -------KGWKSINVAIRLMLDLYANIRPV--KYI----PGIESPL------------------KNPEKIDLIIFRENTD 152 (412)
T ss_pred -------cCCcChhHHHHHHcCCeEeecee--ecC----CCCCCcc------------------cCcCCccEEEEEeccC
Confidence 24789999999999999999997 655 4555662 1235788888888888
Q ss_pred CCeeeeeeee-------c-------------CCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccch
Q 011846 241 GPVELDVYNF-------K-------------GPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDG 298 (476)
Q Consensus 241 G~~Y~g~~~~-------~-------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdg 298 (476)
| +|+|.++. . ..+++ +.+++|+.+++||+|+||+||++|+ ++||+|||+||||.|||
T Consensus 153 G-~Y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~g 231 (412)
T PRK06451 153 D-LYRGIEYPYDSEEAKKIRDFLRKELGVEVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEG 231 (412)
T ss_pred C-eeeccccccccccccccccccccccccccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchh
Confidence 8 88887621 0 12345 5589999999999999999999995 68999999999999999
Q ss_pred HHHHHHHHHHHhhhcc--------------ccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcC
Q 011846 299 RFKDIFQQVYEERWRQ--------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFG 363 (476)
Q Consensus 299 lf~~i~~eva~~eYp~--------------~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~G 363 (476)
+|+++|+|+++++||+ +|++++|+++|+|||++|||||++|++| ||||+|||||||||++|+++|
T Consensus 232 lf~~~~~eva~~eypd~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~G 311 (412)
T PRK06451 232 AFREWAYEVALKEFRDYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVG 311 (412)
T ss_pred hHHHHHHHHHHHhCCcccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcC
Confidence 9999999999657885 7888899999999999999999999999 999999999999999999999
Q ss_pred CcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Q 011846 364 SLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEA 443 (476)
Q Consensus 364 slGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~v 443 (476)
||||+||+|+|++++ +|||+|||||| ||||| +|||+|+|||++|||+|||+ .++|++|++||.++
T Consensus 312 glGl~pSanig~~~a--lFEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lg~-------~~~A~~I~~Av~~v 376 (412)
T PRK06451 312 NIGMLGGANIGDTGG--MFEAIHGTAPK-----YAGKN-VANPTGIIKGGELMLRFMGW-------DKAADLIDKAIMES 376 (412)
T ss_pred chhhcceeeeCCCCc--eeECCCCCccc-----cCCCC-CcCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHH
Confidence 999999999999875 89999999999 99999 99999999999999999995 56999999999999
Q ss_pred HHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 444 VETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 444 l~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+++|.+|+|||+.. +.+.++|++|+++|+.
T Consensus 377 l~~G~~T~Dl~~~~-gg~~~~T~e~~daI~~ 406 (412)
T PRK06451 377 IKQKKVTQDLARFM-GVRALSTTEYTDELIS 406 (412)
T ss_pred HHcCCcCccccccC-CCCccCHHHHHHHHHH
Confidence 99999999997532 2234689999999874
No 15
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5e-98 Score=786.00 Aligned_cols=333 Identities=21% Similarity=0.204 Sum_probs=303.8
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcC-CCCcHHHHHHHHhcCeEEEecccCCCCcccc
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMK 162 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg-~~lp~etleaik~~daiLkGavgtP~~~~~~ 162 (476)
+.++|++||||||||||+++++++|.+.+++++|+++++|.++++++| +++|++++++|+++|++||||++||.+
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---- 78 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---- 78 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc----
Confidence 347899999999999999999999988889999999999999999987 799999999999999999999999963
Q ss_pred ccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCC
Q 011846 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (476)
Q Consensus 163 ~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~ 242 (476)
..++|+|++|||.||||||+||| |+++ |++++|. +++|+|||||||||
T Consensus 79 -----~~~~s~~~~LRk~ldLYaNvRP~--r~~~---pgv~~~~---------------------~~iD~vIVRENtEG- 126 (482)
T PRK09222 79 -----GGYKSLNVTLRKTLGLYANVRPC--VSYH---PFVETKH---------------------PNLDVVIIRENEED- 126 (482)
T ss_pred -----cCccchHHHHHHHcCCeEEeeeE--EecC---CCCCCCC---------------------CCcCEEEEEeccCC-
Confidence 23578899999999999999997 6651 4555551 48999999999999
Q ss_pred eeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCC
Q 011846 243 VELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (476)
Q Consensus 243 ~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~ 320 (476)
+|+|+++...++++ .++++||+++|||+|+||+||++|+ ++||++||+||||.|||||+++|+||| ++|| +
T Consensus 127 ~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP------d 199 (482)
T PRK09222 127 LYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP------D 199 (482)
T ss_pred eeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC------C
Confidence 99999876556777 5599999999999999999999995 689999999999999999999999999 6999 9
Q ss_pred eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCC
Q 011846 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (476)
Q Consensus 321 I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaG 399 (476)
|+++|++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|||++++ ||||+|||||| |||
T Consensus 200 I~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~~a--mFEpvHGSAPd-----IAG 272 (482)
T PRK09222 200 IEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEEYA--MFEAVHGSAPD-----IAG 272 (482)
T ss_pred ceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCCce--eeECCCCCchh-----hcC
Confidence 9999999999999999999999 999999999999999999999999999999998864 89999999999 999
Q ss_pred CCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 400 k~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|| +|||+|+|||++|||+|+|+ .++|++|++||.+++++|++|+||+|.-.+..-.+|++|+++||.
T Consensus 273 k~-iANP~a~IlSaamML~hlG~-------~~~A~~I~~Av~~tl~~G~~T~Dl~g~~~~~~~~~T~e~~~aVi~ 339 (482)
T PRK09222 273 KN-IANPSGLLNAAVMMLVHIGQ-------FDIAELIENAWLKTLEDGIHTADIYNEGVSKKKVGTKEFAEAVIE 339 (482)
T ss_pred CC-ccCcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCCCcccCCCCCCCCCcCHHHHHHHHHH
Confidence 99 99999999999999999995 459999999999999999999999774322234689999999984
No 16
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=4.1e-98 Score=774.45 Aligned_cols=342 Identities=17% Similarity=0.147 Sum_probs=296.4
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+.++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~- 123 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKW- 123 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC-
Confidence 4578999999999999999999888532 68999999999999999999999999999999999999999999962
Q ss_pred cccc-cccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 160 RMKE-FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 160 ~~~~-~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
+. .....+ .+++++|||+||||+|+||+ |++|++.. .+|+ + -...+++|+||||||
T Consensus 124 --~~~~~~~~~-e~~ll~LRk~ldLyaNvRPv--r~~pg~~~--~spl-----------k-----~~~~~~iD~vIVREn 180 (409)
T PLN02329 124 --DKNEKHLRP-EMALFYLRRDLKVFANLRPA--TVLPQLVD--ASTL-----------K-----KEVAEGVDMMIVREL 180 (409)
T ss_pred --CCCcccccc-cccHHHHHHHcCCeEeeeee--eccCCCCC--cCcc-----------c-----ccccCCceEEEEEEC
Confidence 11 000112 24689999999999999997 66654321 1352 0 001368999999999
Q ss_pred CCCCeeeeeeee-c----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhh
Q 011846 239 GTGPVELDVYNF-K----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (476)
Q Consensus 239 teG~~Y~g~~~~-~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eY 312 (476)
||| +|+|.++. . +.+++ ++++||++++|||+|+||+||++|+++||+|||+|||+ +++||+++|+||| ++|
T Consensus 181 TEG-~Y~G~~~~~~~~~~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~ey 257 (409)
T PLN02329 181 TGG-IYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-SEY 257 (409)
T ss_pred CCC-eecCCCcceecccCCceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-hhC
Confidence 999 99998642 1 23567 66999999999999999999999988999999999999 9999999999999 699
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccc
Q 011846 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (476)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd 391 (476)
| +|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 258 P------dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAPd 330 (409)
T PLN02329 258 P------DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAPD 330 (409)
T ss_pred C------CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCchh
Confidence 9 99999999999999999999999 99999999999999999999999999999999875 2489999999999
Q ss_pred ccccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhh
Q 011846 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLL 470 (476)
Q Consensus 392 ~~~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~ 470 (476)
||||| +|||+|+|||++|||+| ||+ .+.|++|++||.+++++|.+|+||++.- | ...+|++|++
T Consensus 331 -----IAGk~-iANP~A~ILS~amML~~~Lg~-------~~~A~~I~~AV~~vl~~g~~T~Dl~~~G-g-~~~~T~e~~d 395 (409)
T PLN02329 331 -----IAGQD-KANPLATILSAAMLLKYGLGE-------EKAAKRIEDAVVDALNKGFRTGDIYSPG-N-KLVGCKEMGE 395 (409)
T ss_pred -----hcCCc-ccChHHHHHHHHHHHhhhCCC-------HHHHHHHHHHHHHHHHcCCcCcccccCC-C-CccCHHHHHH
Confidence 99999 99999999999999999 994 5699999999999999999999994210 1 1256899999
Q ss_pred cccc
Q 011846 471 HVIT 474 (476)
Q Consensus 471 ~~i~ 474 (476)
+||.
T Consensus 396 aIi~ 399 (409)
T PLN02329 396 EVLK 399 (409)
T ss_pred HHHH
Confidence 9874
No 17
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.2e-97 Score=780.70 Aligned_cols=330 Identities=21% Similarity=0.196 Sum_probs=300.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcC-CCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 87 PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 87 ~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg-~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
||++|||||||||||++++++|.+.+++|+|+++++|.++++++| +++|++++++|+++|++||||+++|.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~------- 74 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQG------- 74 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCc-------
Confidence 699999999999999999999987789999999999999999995 899999999999999999999999963
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
...+|+|++|||.||||||+||| |+++ |++++| .+++|+||||||||| +|+
T Consensus 75 --~~~~s~~~~LRk~ldLYANvRPv--~~~~---p~~~~~---------------------~~~vDiVIVRENtEG-lY~ 125 (473)
T TIGR02924 75 --GGHKSLNVTLRKTLGLYANIRPC--VSYH---PFIETK---------------------SPNLNIVIVRENEED-LYT 125 (473)
T ss_pred --cCcccHHHHHHHHcCCeEEEEEe--eccC---CCCCCc---------------------cCCcCEEEEEeccCc-eec
Confidence 12568899999999999999997 6662 444333 158999999999999 999
Q ss_pred eeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEE
Q 011846 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (476)
Q Consensus 246 g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~ 323 (476)
|.++...++++ ..+++||+++|||+|+||+||++|+ +|||++||+||||.|||||+++|+||| ++|| +|++
T Consensus 126 G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------dI~~ 198 (473)
T TIGR02924 126 GIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------DIES 198 (473)
T ss_pred CceeeccCChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------CcEE
Confidence 99876555667 5699999999999999999999995 689999999999999999999999999 6999 9999
Q ss_pred eeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCC
Q 011846 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (476)
Q Consensus 324 e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~ 402 (476)
+|++||+++|||+++|++| ||||+|||||||||++|+++||+||+||+|+|++++ ||||+|||||| |||||
T Consensus 199 e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~a--mFEpvHGSAPd-----IAGk~- 270 (473)
T TIGR02924 199 EHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEYA--MFEAVHGSAPD-----IAGQN- 270 (473)
T ss_pred eeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCcc--eeecCCCchhh-----hCCCC-
Confidence 9999999999999999999 999999999999999999999999999999999875 89999999999 99999
Q ss_pred ccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 403 iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+|||+|+|||++|||+|||+ .++|++|++||.+++++|++|+||+|.-.+..-.+|++|+++||.
T Consensus 271 iANP~a~IlSaamML~hLG~-------~~~A~~I~~AV~~vl~~G~~T~Dl~~~~~~gg~~sT~e~~daVi~ 335 (473)
T TIGR02924 271 IANPSGLLNAAIQMLVHIGQ-------SDIAQLIYNAWLKTLEDGVHTADIYNEKTSKQKVGTKEFAEAVTA 335 (473)
T ss_pred ccChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCccccccccCCCCcCHHHHHHHHHH
Confidence 99999999999999999995 459999999999999999999999754222234689999999984
No 18
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.8e-97 Score=759.79 Aligned_cols=319 Identities=19% Similarity=0.194 Sum_probs=292.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
++|++||||||||||+++++++|.+.+++++|+++++|.+ |+++|++++++|+++|++||||+++|.+ .
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~---~--- 99 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVG---G--- 99 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCC---c---
Confidence 6899999999999999999999987789999999999876 6899999999999999999999999952 1
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
..+++|++||++||||+|+||+ |++ ||+++|+ +++|+||||||||| +|+
T Consensus 100 ---~~~s~~l~LR~~ldLyaNvRP~--k~~----pg~~~~~---------------------~~iD~viVREnteG-~Y~ 148 (360)
T PLN00123 100 ---GVSSLNVQLRKELDLFASLVNC--FNL----PGLPTRH---------------------ENVDIVVIRENTEG-EYS 148 (360)
T ss_pred ---CccchHHHHHHHcCCEEEEEEe--ecC----CCCCCcc---------------------CCCCEEEEEeCCCc-eec
Confidence 2457799999999999999997 555 5665651 48999999999999 999
Q ss_pred eeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEE
Q 011846 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (476)
Q Consensus 246 g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~ 323 (476)
|.++...++++ +++++|++++|||+|+||+||++| +||||++||+|||+.+||||+++|+||+ ++|| +|++
T Consensus 149 g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV~~ 221 (360)
T PLN00123 149 GLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GIKY 221 (360)
T ss_pred cceeecCCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------CceE
Confidence 99876556777 669999999999999999999998 4689999999999999999999999999 6999 9999
Q ss_pred eeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccc--ccc--ccccccccC
Q 011846 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH--GTV--TRHFRLHQK 398 (476)
Q Consensus 324 e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~H--GSA--Pd~~~~~Ia 398 (476)
+|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||++.+ ||||+| ||| || ||
T Consensus 222 ~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~a--~FEpvh~hGSA~~Pd-----IA 294 (360)
T PLN00123 222 NEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHA--VFEQGASAGNVGNEK-----LV 294 (360)
T ss_pred eeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCce--EEEecccCCCcCCcc-----cc
Confidence 9999999999999999999 999999999999999999999999999999998864 899977 999 99 99
Q ss_pred CCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +|||+|+|||++|||+|+|+ .++|++|++||.+++++| .+|+||||.+ .|++|+++||.
T Consensus 295 Gk~-iANP~a~IlS~amML~~lG~-------~~~A~~I~~AV~~~l~~G~~~T~DlGG~~------sT~e~~~ai~~ 357 (360)
T PLN00123 295 EQK-KANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVIAEGKYRTKDLGGSS------TTQEVVDAVIA 357 (360)
T ss_pred CCC-ccChHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccCCCc------CHHHHHHHHHH
Confidence 999 99999999999999999995 459999999999999999 7999999975 46999999874
No 19
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.1e-97 Score=756.45 Aligned_cols=323 Identities=20% Similarity=0.220 Sum_probs=295.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
++|++|||||||||||++++++|.+.+++++|+++++|.+ +++|+++|++++++|+++|++||||+++|...
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~------ 75 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGK------ 75 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCcccc------
Confidence 5799999999999999999999987789999999999987 67899999999999999999999999998531
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
.+++|+|++|||+||||+|+||+ |++| |+.+|+ +++|++|||||||| +|+
T Consensus 76 --~~~~s~~~~lR~~ldlyanvRP~--k~~p----g~~~~~---------------------~~iD~vivREnteG-~Y~ 125 (333)
T TIGR00175 76 --GGHRSLNVALRKELDLYANVVHC--KSLP----GFKTRH---------------------EDVDIVIIRENTEG-EYS 125 (333)
T ss_pred --ccccchhHHHHHHcCCEEEeEEe--cCCC----CCCCCC---------------------CCcCEEEEEEeCCC-ccc
Confidence 23688899999999999999997 6654 555551 47999999999999 999
Q ss_pred eeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEE
Q 011846 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (476)
Q Consensus 246 g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~ 323 (476)
|.+....++++ ..+++|+++++||+|+||+||++|+ +|||++||+||||.+||+|+++|+|++ ++|| +|++
T Consensus 126 g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v~~ 198 (333)
T TIGR00175 126 GLEHESVPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DITF 198 (333)
T ss_pred ceeEeccCCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CCee
Confidence 99765556777 5688999999999999999999996 569999999999999999999999999 5899 9999
Q ss_pred eeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecc-ccccccccccccCCCC
Q 011846 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA-HGTVTRHFRLHQKGQE 401 (476)
Q Consensus 324 e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~-HGSAPd~~~~~IaGk~ 401 (476)
+|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++++ +|||+ |||||| |||||
T Consensus 199 ~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~a--~fEp~~hGSApd-----iaGk~ 271 (333)
T TIGR00175 199 ESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDYA--VFEPGVRHTGPD-----IAGQN 271 (333)
T ss_pred eeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCCc--eEeccCCCCchh-----hCCCC
Confidence 9999999999999999999 999999999999999999999999999999998865 89995 599999 99999
Q ss_pred CccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhcccc
Q 011846 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 402 ~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+|||+|+|||++|||+|||+ .++|++|++||.+++++| .+|+||||.+ .|++|+++||.
T Consensus 272 -iaNP~a~Ils~ammL~~lG~-------~~~a~~i~~Av~~~l~~G~~~T~DlGG~~------~T~e~~~ai~~ 331 (333)
T TIGR00175 272 -IANPTALILSSVMMLNHLGL-------KEHADRIQKAVLSTIAEGKNRTKDLGGTA------TTSDFTEAVIK 331 (333)
T ss_pred -ccChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCccChhcCCCc------CHHHHHHHHHh
Confidence 99999999999999999994 569999999999999999 6999999975 47999999874
No 20
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.1e-97 Score=758.52 Aligned_cols=333 Identities=20% Similarity=0.174 Sum_probs=293.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcccc
Q 011846 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (476)
Q Consensus 87 ~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~ 162 (476)
+|++||||||||||+++++++|.+. +++++|+++++|.+++++||+++|++++++|+++|++||||+++|....
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~-- 78 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDN-- 78 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCC--
Confidence 5899999999999999999888532 6899999999999999999999999999999999999999999995210
Q ss_pred ccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCC--ceEeeecccCCccccccccccC-CCceEEEEecCCC
Q 011846 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKK--PICIGRHAFGDQYRATDTVIKG-PGKLKMVFDPEDG 239 (476)
Q Consensus 163 ~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~--pivi~Re~ted~Y~~~e~~~~~-~~~iDlvivREnt 239 (476)
......++++ +++|||+||||+|+||| |++| |+++ |+ + +. .+++|+|||||||
T Consensus 79 ~~~~~~~~~~-~~~LR~~ldlyanvRP~--r~~~----g~~~~~p~-----------~------~~~~~~iD~vivREnt 134 (349)
T TIGR00169 79 LPRDQRPEQG-LLKLRKSLDLFANLRPA--KVFP----SLEDLSPL-----------K------EEIAKGVDFVVVRELT 134 (349)
T ss_pred CCccccchhh-HHHHHHHcCCeEEEEEe--eccC----CCCccCCC-----------c------ccccCCceEEEEeecc
Confidence 0000122444 89999999999999997 6665 4432 42 0 01 1589999999999
Q ss_pred CCCeeeeeeeec-C---CceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcc
Q 011846 240 TGPVELDVYNFK-G---PGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (476)
Q Consensus 240 eG~~Y~g~~~~~-~---~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~ 314 (476)
|| +|+|.++.. . .+++ +++++||+++|||+|+||+||++|+++||+|||+|||| ++|+|+++|+||+ ++||
T Consensus 135 EG-~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP- 210 (349)
T TIGR00169 135 GG-IYFGEPKGRFGAGGEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP- 210 (349)
T ss_pred CC-eecCCCccccCCCCcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC-
Confidence 99 999987532 1 3567 66999999999999999999999988999999999999 9999999999999 5999
Q ss_pred ccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccc
Q 011846 315 KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHF 393 (476)
Q Consensus 315 ~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~ 393 (476)
+|++++++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 211 -----~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPd-- 282 (349)
T TIGR00169 211 -----DVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPD-- 282 (349)
T ss_pred -----CceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhH--
Confidence 99999999999999999999999 99999999999999999999999999999999764 2599999999999
Q ss_pred ccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcc
Q 011846 394 RLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHV 472 (476)
Q Consensus 394 ~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~ 472 (476)
||||| +|||+|+|||++|||+| +| +.++|++|++||++++++|.+|+||||.++ |++|+++|
T Consensus 283 ---iAGk~-iANP~a~IlS~amML~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~DlgG~~~------t~e~t~av 345 (349)
T TIGR00169 283 ---IAGKG-IANPIAQILSAAMMLRYSFN-------LEEAADAIEAAVKKVLAEGYRTPDLGSSAT------TEVGTAEM 345 (349)
T ss_pred ---hcCCC-CCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCCccccCCCcc------hHHHHHHH
Confidence 99999 99999999999999999 78 456999999999999999999999999864 68888888
Q ss_pred cc
Q 011846 473 IT 474 (476)
Q Consensus 473 i~ 474 (476)
+.
T Consensus 346 ~~ 347 (349)
T TIGR00169 346 GE 347 (349)
T ss_pred Hh
Confidence 74
No 21
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-97 Score=771.24 Aligned_cols=338 Identities=21% Similarity=0.214 Sum_probs=293.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCC--CCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~--~lp~etleaik~~daiLkGavgtP~~ 158 (476)
|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++|++||||++||.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888521 259999999999999999999 99999999999999999999999953
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
..++|+|++||++||||+|+||+ |++| ++++|+ +.++++|+||||||
T Consensus 102 ---------~~~~s~~l~LR~~ldLyaNvRPv--k~~p----gl~~pl------------------k~~~~iD~vIvREn 148 (409)
T PRK07006 102 ---------GGIRSLNVALRQELDLYVCLRPV--RYFK----GVPSPV------------------KRPEDTDMVIFREN 148 (409)
T ss_pred ---------cCccChHHHHHHHcCCEEEEEEE--ecCC----CCCCCC------------------CCCCCCCEEEEEec
Confidence 13568899999999999999997 6665 545552 12246777777777
Q ss_pred CCCCeeeeeeeec-----------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcc
Q 011846 239 GTGPVELDVYNFK-----------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTIL 293 (476)
Q Consensus 239 teG~~Y~g~~~~~-----------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVl 293 (476)
||| +|+|.+... ..++| +.+++|++++|||+|+||+||++|+ ++||+|||+|||
T Consensus 149 teG-~Y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVl 227 (409)
T PRK07006 149 SED-IYAGIEWKAGSAEAKKVIKFLQEEMGVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIM 227 (409)
T ss_pred cCC-eecccccccCCcccceeeeccccccCcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence 777 777765210 12345 5689999999999999999999995 689999999999
Q ss_pred cccchHHHHHHHHHHHhhhcccccc-------------CCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHh
Q 011846 294 KKYDGRFKDIFQQVYEERWRQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLA 359 (476)
Q Consensus 294 k~tdglf~~i~~eva~~eYp~~f~~-------------~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA 359 (476)
|.|||||++++.|||+++||.+|++ ++|+++|++||+||||||++|++| ||||+|||||||||++|
T Consensus 228 k~tdglf~~~~~eva~~ey~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa 307 (409)
T PRK07006 228 KFTEGAFKDWGYQLAEEEFGDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALA 307 (409)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHH
Confidence 9999999998889996689777776 699999999999999999999999 99999999999999999
Q ss_pred hhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 011846 360 QGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439 (476)
Q Consensus 360 ~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~A 439 (476)
+++|||||+||+|+|++. .||||+|||||| ||||| +|||+|+|||++|||+|||+ .++|++|++|
T Consensus 308 ~l~GglGlapSanig~~~--a~FEpvHGSAPd-----iAGk~-iANP~a~IlS~amML~~lG~-------~~~A~~Ie~A 372 (409)
T PRK07006 308 AQVGGIGIAPGANINDGH--AIFEATHGTAPK-----YAGLD-KVNPGSVILSAEMMLRHMGW-------TEAADLIIKS 372 (409)
T ss_pred HhcCchhhcccceeCCCc--eEEECCCCcchh-----hCCCC-CcChHHHHHHHHHHHHHcCC-------HHHHHHHHHH
Confidence 999999999999999765 489999999999 99999 99999999999999999995 4599999999
Q ss_pred HHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 440 CIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 440 V~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|.+++++|.+|+|||....+...+.|++|+++|+.
T Consensus 373 v~~~l~~G~~T~Dl~~~~~gg~~~~T~e~~daI~~ 407 (409)
T PRK07006 373 MEKTIASKTVTYDFARLMEGATEVKCSEFGDALIK 407 (409)
T ss_pred HHHHHhcCCccccccccCCCCcccCHHHHHHHHHh
Confidence 99999999999999743222244679999999874
No 22
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=7.2e-97 Score=770.66 Aligned_cols=338 Identities=22% Similarity=0.219 Sum_probs=289.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcC--CCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg--~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
|++||||||||||+++++++|.+. +++|+|+++++|.++++++| +++|++++++|+++|++||||++||.+
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888521 15999999999999999999 999999999999999999999999953
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
.+++|+|++||++||||+|+||| |++|++ ++|+ +.++++|+||||||
T Consensus 109 ---------~~~~s~~l~LR~~ldLyaNvRP~--k~~pgl----~s~~------------------~~~~~vDivIvREn 155 (416)
T TIGR00183 109 ---------GGIRSLNVALRQELDLYVCLRPV--RYYKGV----PSPV------------------KHPEKVDMVIFREN 155 (416)
T ss_pred ---------ccccCcHHHHHHHcCCEEEEeEe--ecCCCC----CCcC------------------CCCCCCCEEEEEeC
Confidence 23678899999999999999997 666543 3441 11235555555555
Q ss_pred CCCCeeeeeeee-----------------------cCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcc
Q 011846 239 GTGPVELDVYNF-----------------------KGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTIL 293 (476)
Q Consensus 239 teG~~Y~g~~~~-----------------------~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVl 293 (476)
||| +|+|.++. ...+++ +.+++|+++++||+|+||+||++| +++||+|||+|||
T Consensus 156 teG-~Y~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvl 234 (416)
T TIGR00183 156 TED-IYAGIEWAEGSEEAKKLIRFLQNELGVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIM 234 (416)
T ss_pred CCC-cccccccccCcccceeeecccccccCccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcc
Confidence 555 55554310 012455 668999999999999999999999 4689999999999
Q ss_pred cccchHHHHHHHHHHHhhhcccccc-------------CCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHh
Q 011846 294 KKYDGRFKDIFQQVYEERWRQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLA 359 (476)
Q Consensus 294 k~tdglf~~i~~eva~~eYp~~f~~-------------~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA 359 (476)
|.|||+|+++|.|||+++||.+|++ ++|+++|++||+||||||++|++| ||||+|||||||||++|
T Consensus 235 k~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa 314 (416)
T TIGR00183 235 KFTEGAFRDWGYELAKKEFGAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALA 314 (416)
T ss_pred ccchhhHHHHHHHHHHHHHhHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHH
Confidence 9999999999999996579766665 389999999999999999999999 99999999999999999
Q ss_pred hhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 011846 360 QGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAA 439 (476)
Q Consensus 360 ~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~A 439 (476)
+++|||||+||+|||++. .||||+|||||| ||||| +|||+|+|||++|||+|+|+ .++|++|++|
T Consensus 315 ~l~GslGlapSanig~~~--alFEp~HGSAPd-----iAGk~-iANP~a~IlS~amML~~lg~-------~~~A~~Ie~A 379 (416)
T TIGR00183 315 AQVGGIGIAPGANIGDEI--GIFEATHGTAPK-----YAGQD-KVNPGSIILSGEMMLEHMGW-------KEAADLIKKA 379 (416)
T ss_pred HhcCchhhcceeeeCCCc--eEEECCCCCchh-----hcCCC-CCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHH
Confidence 999999999999999875 589999999999 99999 99999999999999999994 5699999999
Q ss_pred HHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 440 CIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 440 V~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|.+++++|++|+||++...|.+..+|++|+++|+.
T Consensus 380 V~~~l~~G~~T~Dl~~~~gg~~~~~T~e~~daI~~ 414 (416)
T TIGR00183 380 MEKAIASKIVTYDFARLMDGAKEVKCSEFAEAIIE 414 (416)
T ss_pred HHHHHHcCCcccccccccCCCcccCHHHHHHHHHh
Confidence 99999999999999532212134679999999874
No 23
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-96 Score=754.94 Aligned_cols=336 Identities=20% Similarity=0.175 Sum_probs=296.2
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
.++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|....
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 468999999999999999999888532 6899999999999999999999999999999999999999999996211
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCC--ceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKK--PICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~--pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
.+ ....+.+| |++|||+||||+|+||+ |++| |+++ |+ + .+..+++|+||||||
T Consensus 82 ~~--~~~~~~~~-~~~LR~~ldlyanvRP~--r~~p----g~~~~~pl-----------k-----~~~~~~iD~vivREn 136 (358)
T PRK00772 82 LP--PDVRPERG-LLALRKELGLFANLRPA--KLYP----GLADASPL-----------K-----PEIVAGLDILIVREL 136 (358)
T ss_pred CC--ccCCChhh-HHHHHHHcCCeEEEeEe--ecCC----CCCCcCCC-----------c-----ccccCCccEEEEecc
Confidence 11 00123456 89999999999999997 6665 5443 52 1 001248999999999
Q ss_pred CCCCeeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhc
Q 011846 239 GTGPVELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (476)
Q Consensus 239 teG~~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp 313 (476)
||| +|+|.++.. ..+++ +.+++|+++++||+|+||+||++|+++||++||+|||| ++|+|+++|+||+ ++||
T Consensus 137 tEG-~Y~g~~~~~~~~~~~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~eyp 213 (358)
T PRK00772 137 TGG-IYFGEPRGREGLGGEERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KEYP 213 (358)
T ss_pred cCC-eecCCcccccCCCCceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hHCC
Confidence 999 999987542 23467 66999999999999999999999988999999999999 9999999999999 5999
Q ss_pred cccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccc
Q 011846 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRH 392 (476)
Q Consensus 314 ~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~ 392 (476)
+|++++++||+++||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 214 ------~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSApd- 285 (358)
T PRK00772 214 ------DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAPD- 285 (358)
T ss_pred ------CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchhh-
Confidence 99999999999999999999999 99999999999999999999999999999999885 2599999999999
Q ss_pred cccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCccc---CcccCCCCccCchhh
Q 011846 393 FRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL---AILVHGPKYILPSPY 468 (476)
Q Consensus 393 ~~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL---gG~~~~~~~~~~~~~ 468 (476)
||||| +|||+|+|||++|||+| +|+ .++|++|++||.+++++|++|+|| ||.+ .|++|
T Consensus 286 ----iAGk~-~aNP~a~Ils~ammL~~~lg~-------~~~a~~i~~Av~~~l~~g~~T~Dl~~~gg~~------~T~e~ 347 (358)
T PRK00772 286 ----IAGKG-IANPIATILSAAMMLRYSLGL-------EEAADAIEAAVEKVLAQGYRTADIAEGGGKV------STSEM 347 (358)
T ss_pred ----hcCCC-CcCCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHcCCcCcccccCCCCc------CHHHH
Confidence 99999 99999999999999999 984 569999999999999999999999 6655 46999
Q ss_pred hhcccc
Q 011846 469 LLHVIT 474 (476)
Q Consensus 469 ~~~~i~ 474 (476)
+++||.
T Consensus 348 ~~av~~ 353 (358)
T PRK00772 348 GDAILA 353 (358)
T ss_pred HHHHHH
Confidence 998873
No 24
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-96 Score=752.49 Aligned_cols=327 Identities=17% Similarity=0.169 Sum_probs=292.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC---CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~---~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~ 162 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++||++|++||||+++|. ++
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~---~~ 81 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPS---VP 81 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCC---CC
Confidence 57999999999999999999988643 8999999999999999999999999999999999999999999995 22
Q ss_pred ccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCC
Q 011846 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (476)
Q Consensus 163 ~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~ 242 (476)
. ..++++++++|||+||||+|+||+ |++ ||+++|+ +..+++|+|||||||||
T Consensus 82 ~---~~~~~~~~~~LRk~ldLyaNvRP~--r~~----pg~~sp~------------------k~~~~iD~vivREnteG- 133 (344)
T PRK03437 82 S---GVLERGLLLKLRFALDHYVNLRPS--KLY----PGVTSPL------------------AGPGDIDFVVVREGTEG- 133 (344)
T ss_pred C---CCcccchHHHHHHHcCCeEEEEEe--ecC----CCCCCcC------------------CCCCCCCEEEEEECCCc-
Confidence 1 123577789999999999999997 665 4556673 11358999999999999
Q ss_pred eeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 243 VELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 243 ~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
+|+|.++.. ..++| +++++|+++++||+|+||+||++| +++||++||+|||+.+||||+++|+||+ ++||
T Consensus 134 ~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp--- 209 (344)
T PRK03437 134 PYTGNGGALRVGTPHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP--- 209 (344)
T ss_pred cccCCcccccCCCcceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC---
Confidence 999987431 23566 669999999999999999999999 4679999999999999999999999999 6999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCc-eeeeeccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFR 394 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a-~~~fEp~HGSAPd~~~ 394 (476)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ..||||+||||||
T Consensus 210 ---dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPd--- 283 (344)
T PRK03437 210 ---DVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPD--- 283 (344)
T ss_pred ---CceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchh---
Confidence 99999999999999999999999 999999999999999999999999999999997642 3599999999999
Q ss_pred cccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 395 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 395 ~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+|||+ .++|++|++||++++++| +||.+ .|++|+++|+.
T Consensus 284 --iAGk~-iANP~a~IlS~amML~~lg~-------~~~a~~I~~Av~~~l~~g-----~gg~~------~T~e~~~ai~~ 342 (344)
T PRK03437 284 --IAGQG-IADPTAAILSVALLLDHLGE-------EDAAARIEAAVEADLAER-----GKMGR------STAEVGDRIAA 342 (344)
T ss_pred --hcCCC-ccChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhc-----CCCCc------CHHHHHHHHHh
Confidence 99999 99999999999999999994 569999999999999998 46654 47999998863
No 25
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=6.9e-96 Score=741.72 Aligned_cols=320 Identities=20% Similarity=0.188 Sum_probs=294.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccccc
Q 011846 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~~~ 167 (476)
|++||||||||||+++++++|.+.+++++|+++++|.+++++||+++|++++++|+++|++||||+++|.+ +
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~---~----- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPAN---P----- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCC---C-----
Confidence 68999999999999999999987789999999999999999999999999999999999999999999963 1
Q ss_pred cCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeeeee
Q 011846 168 SMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDV 247 (476)
Q Consensus 168 ~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~g~ 247 (476)
.++|+|++|||+||||+|+||| |++ ||+++|. |.++|+||||||||| +|+|.
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~--r~~----~g~~~~~--------------------~~~iD~vivREnteG-~Y~g~ 124 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPA--KSL----PGIPDLY--------------------PNGKDIVIVRENTEG-LYAGF 124 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEe--ecc----CCCCCCC--------------------CCCCCEEEEEeCcCC-eeecc
Confidence 2578899999999999999998 554 5655541 248999999999999 99998
Q ss_pred eeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeE
Q 011846 248 YNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326 (476)
Q Consensus 248 ~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~ 326 (476)
+.. ..+++ +.+++|++++|||+|+||+||++|++|||++||+|||+.+||||+++|+||+ ++|| |+++|+
T Consensus 125 ~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~~~ 195 (322)
T TIGR02088 125 EFG-FSDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYRDM 195 (322)
T ss_pred ccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeeeee
Confidence 643 34567 6699999999999999999999998889999999999999999999999999 5897 999999
Q ss_pred eHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccC
Q 011846 327 LIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTN 405 (476)
Q Consensus 327 lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iAN 405 (476)
+||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++.+ ||||.|||||| |+||| +||
T Consensus 196 ~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a--~fep~hGsa~d-----iaG~~-~aN 267 (322)
T TIGR02088 196 YVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDRKA--LFEPVHGSAPD-----IAGKG-IAN 267 (322)
T ss_pred eHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCCce--EEecCCCChhH-----hCCCC-CCC
Confidence 9999999999999999 999999999999999999999999999999998864 89999999999 99999 999
Q ss_pred cHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhccc
Q 011846 406 SIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVI 473 (476)
Q Consensus 406 PiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i 473 (476)
|+|+|+|++|||+|+|+ .++|++|++||.+++++|.+|+||||.+ +|++|+++||
T Consensus 268 p~a~i~A~~~~l~~~g~-------~~~a~~i~~Av~~~l~~g~~T~DlgG~~------~T~e~~~av~ 322 (322)
T TIGR02088 268 PTAAILSVAMMLDYLGE-------LEKGKLVWEAVEYYIIEGKKTPDLGGTA------KTKEVGDEIA 322 (322)
T ss_pred hHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccCCCc------CHHHHHHHhC
Confidence 99999999999999995 4599999999999999999999999864 4799999987
No 26
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-96 Score=723.62 Aligned_cols=324 Identities=23% Similarity=0.296 Sum_probs=301.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
.+|++||||||||||++++++++.++.++|+|+.+|++...-..++..+|++++|++++++++||||+.||.+
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~------- 108 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIG------- 108 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccc-------
Confidence 5789999999999999999999998999999999999765433377899999999999999999999999984
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
++.+|+|++|||+|+||||+||| +++ +|++.| | +++|+|+||||||| +|+
T Consensus 109 --kgh~S~nl~LRK~f~LyANVRPc--~Si----eG~Kt~-----------Y----------~~vD~V~IRENTEg-eYs 158 (365)
T KOG0785|consen 109 --KGHRSLNLALRKEFGLYANVRPC--KSI----EGYKTP-----------Y----------DDVDLVIIRENTEG-EYS 158 (365)
T ss_pred --cccccHHHHHHHHhchhccceec--ccc----cCCcCC-----------C----------CCceEEEEecCCcc-ccc
Confidence 34579999999999999999996 665 688887 5 58999999999999 999
Q ss_pred eeeeecCCceEEE-EEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEE
Q 011846 246 DVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (476)
Q Consensus 246 g~~~~~~~~va~~-~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~ 323 (476)
|+||...+||+++ +.+|+.+++||++|||+||++++ ++||++||+|||+.+||||+++|+|++ ++|| +|.+
T Consensus 159 giEh~vvpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI~~ 231 (365)
T KOG0785|consen 159 GIEHQVVPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DIKF 231 (365)
T ss_pred cceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------ccch
Confidence 9999888899977 78999999999999999999885 789999999999999999999999998 6999 9999
Q ss_pred eeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCC
Q 011846 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (476)
Q Consensus 324 e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~ 402 (476)
|++|+|+||++|+++|..| |+|++|||||||||+||+|+|||||+||+||| ++. .+|||+|||||| |||||
T Consensus 232 eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g~-~~~e~vHGsAPD-----IAGkd- 303 (365)
T KOG0785|consen 232 EEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DGI-VIFEAVHGSAPD-----IAGKD- 303 (365)
T ss_pred hHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CCe-eeeecccCCCcc-----cccCC-
Confidence 9999999999999999999 99999999999999999999999999999999 553 589999999999 99999
Q ss_pred ccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC-CCcccCcccCCCCccCchhhhhcccc
Q 011846 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 403 iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+|||+|.+||++|||+|+| +.++|++|++||.+++++|. +|+||||.++ |++|.++|+.
T Consensus 304 lANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLGGka~------~seft~aVc~ 363 (365)
T KOG0785|consen 304 LANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLGGKAT------TSEFTDAVCD 363 (365)
T ss_pred cCCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccCCCcc------chHHHHHHHh
Confidence 9999999999999999998 67799999999999999996 9999999997 5888888763
No 27
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-94 Score=751.59 Aligned_cols=338 Identities=21% Similarity=0.212 Sum_probs=290.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCC--CCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~--~lp~etleaik~~daiLkGavgtP~~ 158 (476)
|++|||||||||||++++++|.+. +++|+|.++++|.++++++|+ ++|++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 899999999999999999888521 158999999999999999996 79999999999999999999999953
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
..++|+|++|||.||||+|+||| |++| |+.+|+ +.++++|+||||||
T Consensus 111 ---------~g~~s~~l~LRk~ldLyaNvRPv--r~~p----gl~sp~------------------k~~~~iD~vIvREN 157 (474)
T PRK07362 111 ---------GGIRSLNVALRQIFDLYSCVRPC--RYYA----GTPSPH------------------KNPEKLDVIVYREN 157 (474)
T ss_pred ---------cCccchHHHHHHHcCCceeeeEe--eccC----CCCCcc------------------cCCCCCCEEEEEEC
Confidence 12568899999999999999997 6654 555662 22357788888888
Q ss_pred CCCCeeeeeeeec----------------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC---CCCEEE
Q 011846 239 GTGPVELDVYNFK----------------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK---KWPLYL 286 (476)
Q Consensus 239 teG~~Y~g~~~~~----------------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r---~kkVt~ 286 (476)
||| +|+|+++.. ..+++ ..+++|+++++||+|+||+||++| +++||+
T Consensus 158 TEG-lY~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~ 236 (474)
T PRK07362 158 TED-IYMGIEWEAGDEIGDKLIKHLNEEVIPASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTL 236 (474)
T ss_pred CCc-eecccccccccccchhcccccccccccccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 887 887775210 12355 568999999999999999999998 368999
Q ss_pred EECCCcccccchHHHHHHHHHHHhhhccccc-------------------------------------------------
Q 011846 287 STKNTILKKYDGRFKDIFQQVYEERWRQKFE------------------------------------------------- 317 (476)
Q Consensus 287 v~KaNVlk~tdglf~~i~~eva~~eYp~~f~------------------------------------------------- 317 (476)
|||+||||++||+|++++.|||+++|+++++
T Consensus 237 VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (474)
T PRK07362 237 VHKGNIMKYTEGAFRDWGYELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVL 316 (474)
T ss_pred EECCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999888999545532210
Q ss_pred ------------cCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeec
Q 011846 318 ------------EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEA 384 (476)
Q Consensus 318 ------------~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp 384 (476)
.++|.++|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|||++.+ ||||
T Consensus 317 ~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a--~FEp 394 (474)
T PRK07362 317 DSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAA--IFEA 394 (474)
T ss_pred cchhhccccccCCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCce--eeec
Confidence 1358999999999999999999999 999999999999999999999999999999998864 8999
Q ss_pred cccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCC-CCcc
Q 011846 385 AHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG-PKYI 463 (476)
Q Consensus 385 ~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~-~~~~ 463 (476)
+|||||| ||||| +|||+|+|||++|||+|||+ .++|++|++||.+++++|.+|+||||.... ....
T Consensus 395 vHGSAPd-----IAGk~-iANP~A~ILS~aMML~~LG~-------~~~A~~I~~AV~~vl~~g~~T~Dlg~~~~~~~~~~ 461 (474)
T PRK07362 395 THGTAPK-----HAGLD-RINPGSVILSGVMMLEYLGW-------QEAADLITKGLSAAIANKQVTYDLARLMEPPVDPL 461 (474)
T ss_pred CCCCchh-----hcCCC-CcCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcccCCCCccccCCCCc
Confidence 9999999 99999 99999999999999999995 569999999999999999999999864321 1346
Q ss_pred Cchhhhhcccc
Q 011846 464 LPSPYLLHVIT 474 (476)
Q Consensus 464 ~~~~~~~~~i~ 474 (476)
+|++|+++||.
T Consensus 462 sT~E~~~aIi~ 472 (474)
T PRK07362 462 SCSEFAEAIIS 472 (474)
T ss_pred CHHHHHHHHHh
Confidence 89999999984
No 28
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=3.2e-94 Score=738.16 Aligned_cols=335 Identities=25% Similarity=0.296 Sum_probs=294.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcccc
Q 011846 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (476)
Q Consensus 87 ~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~ 162 (476)
+|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|+|++++|+++|++||||+++|...
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~--- 77 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPP--- 77 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSS---
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccc---
Confidence 5899999999999999999888543 589999999999999999999999999999999999999999999731
Q ss_pred ccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCC
Q 011846 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (476)
Q Consensus 163 ~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~ 242 (476)
+ .+++. ..++||+.||||+|+||+ |.+|. ++..+|+ + ...++++|++||||||||
T Consensus 78 ~---~~~~~-~l~~lR~~ldl~anvRp~--~~~~~--~~~~~~~-----------~-----~~~~~~iDivivREnteG- 132 (348)
T PF00180_consen 78 G---IRSEN-GLLKLRKELDLYANVRPV--RSFPG--PGVPSPL-----------K-----DEIPEGIDIVIVRENTEG- 132 (348)
T ss_dssp S---HSHHH-HHHHHHHHTTHHEEEEEE--EEECE--TTGGSSB-----------S-----HHHHTTSEEEEEEESSSG-
T ss_pred c---cccHH-HHHHHHHhcccceeeEEE--EEecc--ccccccc-----------c-----ccccCcceEEEecccccC-
Confidence 1 11122 238999999999999997 76642 3444552 1 001257999999999999
Q ss_pred eeeeeeeecCCc-----eE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhccc
Q 011846 243 VELDVYNFKGPG-----IA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (476)
Q Consensus 243 ~Y~g~~~~~~~~-----va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~ 315 (476)
+|+|.++...++ ++ .++++|++++|||+|+||+||++| +++||+|||+|||+.++ +|+++|+|+++++||
T Consensus 133 ~Y~g~~~~~~~~~~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp-- 209 (348)
T PF00180_consen 133 LYSGIEHEIGDGGTPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYP-- 209 (348)
T ss_dssp GGGEEEEEECSEEEGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHT--
T ss_pred cccCCCCceeeccCCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcc--
Confidence 999999875443 77 669999999999999999999999 78999999999999888 999999999955999
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccc
Q 011846 316 FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFR 394 (476)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~ 394 (476)
+|+++|++||+++|+||++|++| ||||+|||||||||++++++||+||+||+|||+++ ..+|||+||||||
T Consensus 210 ----~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSApd--- 281 (348)
T PF00180_consen 210 ----DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAPD--- 281 (348)
T ss_dssp ----TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTGG---
T ss_pred ----eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-ccccccccccccc---
Confidence 99999999999999999999999 99999999999999999999999999999999644 3599999999999
Q ss_pred cccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcc
Q 011846 395 LHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHV 472 (476)
Q Consensus 395 ~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~ 472 (476)
|+||| +|||+|||||++|||+| +| +.+.|++|++||.+++++|++|+||||.+ .+.+.|++|+++|
T Consensus 282 --iaGk~-~aNP~a~Ils~a~mL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlgg~~--~~~~~T~e~~daV 348 (348)
T PF00180_consen 282 --IAGKG-IANPIAMILSAAMMLEHSLG-------LPEAADAIEKAVEKVLEEGIRTPDLGGSA--TTAVSTEEFGDAV 348 (348)
T ss_dssp --GTTSS-HS-THHHHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHTTEEBGGGHTTT--CEEBHHHHHHHHH
T ss_pred --ccCCc-ccCcHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcCCCCccccCCC--CCCCCHHHHHhhC
Confidence 99999 99999999999999999 87 67799999999999999999999999988 5788899999876
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=6.7e-90 Score=696.79 Aligned_cols=359 Identities=35% Similarity=0.445 Sum_probs=321.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHH----hcCC---CceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 88 IVEMDGDEMTRIIWQMIKDKL----IFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 88 I~vi~GDGIGpEI~~a~~~~l----~~~~---~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
|-++.|||||+|||+++.+++ +.+| .+|+|.++++|.+++++||+++|+||+++|+++.|.+|||++||-+
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg-- 98 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG-- 98 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc--
Confidence 348899999999999887554 4567 9999999999999999999999999999999999999999999964
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccc-cCCCCCCC-CCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQ-NIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k-~~p~~~pg-~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
++|+|||++|||.||||+|+|||.+. .+|+++|+ |+.|+||+||||||+|+|+||..++++...++.+-++
T Consensus 99 -------~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 99 -------KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred -------ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 68999999999999999999999876 88999998 9999999999999999999999998888888866554
Q ss_pred CCCCeeeeeeeecCCceEEE-EEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCCcccccchHHHHHHHHHHHhh-----
Q 011846 239 GTGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER----- 311 (476)
Q Consensus 239 teG~~Y~g~~~~~~~~va~~-~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaNVlk~tdglf~~i~~eva~~e----- 311 (476)
.-+ .....+. ++...+ +.+++++++|++|.||+||.+++ ++||++||.||||+|+|.|+++++|||+++
T Consensus 172 e~~---~~~i~~p-e~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 EMG---VKKIRFP-EDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred ccc---cceEecC-CCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 322 2222332 233333 56889999999999999999997 799999999999999999999999999874
Q ss_pred ---hccccccCC----eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeee
Q 011846 312 ---WRQKFEEHS----IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE 383 (476)
Q Consensus 312 ---Yp~~f~~~~----I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fE 383 (476)
|..+|+..+ |.++|+++|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+||+|||+. +++||
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~fE 325 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEFE 325 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEEE
Confidence 677788888 9999999999999999999999 9999999999999999999999999999999943 46999
Q ss_pred ccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCC-Cc
Q 011846 384 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP-KY 462 (476)
Q Consensus 384 p~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~-~~ 462 (476)
|+|||||+ ++||+ ++||+|+||||.|||+|+||+| +|+.|++||.+++++|++|+||+-...+. +.
T Consensus 326 A~HGTapk-----~aG~~-~~Np~a~Ils~~~ml~~~Gw~e-------aa~li~~a~~~ti~~~~vT~DlArl~~~~~~~ 392 (407)
T COG0538 326 ATHGTAPK-----YAGKD-STNPIASILSGTMMLRHRGWLE-------AADLIEKAVEDTIESGKVTYDLARLMGGAKRY 392 (407)
T ss_pred eccCcccc-----ccCcC-CCCcHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHhCceeHHHHHhhCCCccc
Confidence 99999999 68997 9999999999999999999765 89999999999999999999998777654 49
Q ss_pred cCchhhhhcccc
Q 011846 463 ILPSPYLLHVIT 474 (476)
Q Consensus 463 ~~~~~~~~~~i~ 474 (476)
++|++|+++||.
T Consensus 393 v~tsEF~d~ii~ 404 (407)
T COG0538 393 LSTSEFADAIIE 404 (407)
T ss_pred eeHHHHHHHHHH
Confidence 999999999984
No 30
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-81 Score=626.28 Aligned_cols=327 Identities=19% Similarity=0.209 Sum_probs=296.6
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
.|....++|++|||||||||++.++.+++.+..+|++|++++++.. .+.++..++|++++++++++.|||.+-||..
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~--~~~~~~~~~e~v~Si~rNkValkG~i~t~~~- 113 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGS--NKESSEDLDEAVESIKRNKVALKGNIETPDL- 113 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCC--ccccchhHHHHHHHHHhcceeEeecccCCCC-
Confidence 4777889999999999999999999999999999999999999862 2344567999999999999999999999942
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
.+...|.|+.||++||||||+-.| +++| |+++. | +++|+|+|||||
T Consensus 114 -------~g~~~s~n~~LR~~LDLyanvv~~--~slp----G~~tR-----h----------------~~vDiviIRENT 159 (375)
T KOG0784|consen 114 -------PGGAKSLNVKLRKELDLYANVVHC--KSLP----GVKTR-----H----------------ENVDIVIIRENT 159 (375)
T ss_pred -------ccchhhhHHHHHHhhhhhhheeee--eccC----Ccccc-----c----------------CCccEEEEecCC
Confidence 235689999999999999999875 8775 55542 2 599999999999
Q ss_pred CCCeeeeeeeecCCceEEE-EEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhccccc
Q 011846 240 TGPVELDVYNFKGPGIALA-MYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (476)
Q Consensus 240 eG~~Y~g~~~~~~~~va~~-~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~ 317 (476)
|| +|+|+||...+||.++ +++|++.++|||||||+||.+. |||||+||||||||..||||+++|+||++ .||
T Consensus 160 EG-EYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~-~Yp---- 233 (375)
T KOG0784|consen 160 EG-EYSGLEHESVPGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAK-KYP---- 233 (375)
T ss_pred cc-cccccccccCcchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHh-cCC----
Confidence 99 9999999988999977 7899999999999999999998 48999999999999999999999999995 699
Q ss_pred cCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecc--ccccccccc
Q 011846 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA--HGTVTRHFR 394 (476)
Q Consensus 318 ~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~--HGSAPd~~~ 394 (476)
+|++|.++||++|||||.+|++| |+|+|||||.|+|.+|++++||.|+.|++|+|++++ +|||- |+. .+
T Consensus 234 --~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~yA--VFE~g~r~~~-~~--- 305 (375)
T KOG0784|consen 234 --DITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDYA--VFEPGARHTG-TS--- 305 (375)
T ss_pred --CccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccceE--Eecccccccc-hh---
Confidence 99999999999999999999999 999999999999999999999999999999999998 57883 554 44
Q ss_pred cccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhccc
Q 011846 395 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVI 473 (476)
Q Consensus 395 ~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i 473 (476)
++||+ +|||+|+|+|.+|||+||| ++.+|++|++||.+||.+| ++|+||||..+| ++|.++||
T Consensus 306 --~~g~~-~aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlGG~~Tt------~dvi~avI 369 (375)
T KOG0784|consen 306 --IAGKN-IANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLGGQSTT------QDVIDAVI 369 (375)
T ss_pred --hhccc-ccCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccCCCcch------HHHHHHHH
Confidence 89999 9999999999999999998 6789999999999999999 599999999987 66667776
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-76 Score=570.95 Aligned_cols=341 Identities=18% Similarity=0.158 Sum_probs=299.1
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
+++|+++|||||||||+..++.+|.+. +++|+|++..+|+.+.|.+|.|+|+|++++.|++|++|+|++|.|.
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~k--- 80 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYK--- 80 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcc---
Confidence 478999999999999999999888654 6899999999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
|+. +..+++..+ +.||+.|.+|+|+||+ ..+|.++.- +||- .| -.+++|+++|||.++
T Consensus 81 w~~-~~lrpe~gl-l~ir~~lkvfanlrp~--~~~~qlvd~--s~lk------------~e----~aeg~d~mvvrel~g 138 (363)
T KOG0786|consen 81 WDK-NHLRPEMGL-LKIRRDLKVFANLRPA--TVLPQLVDA--STLK------------KE----VAEGVDMMVVRELTG 138 (363)
T ss_pred cCc-CCcChhhhH-HHHHHHHHHHhcCCcc--hhhHhhhcc--cccc------------HH----HhcCcceEEeeeecC
Confidence 433 234556666 9999999999999996 555544321 4420 01 137899999999999
Q ss_pred CCeeeeeeeec-CCceE-EEEEecHHHHHHHHHHHHHHHHcCC--CCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 241 GPVELDVYNFK-GPGIA-LAMYNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 241 G~~Y~g~~~~~-~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~--kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
| +|+|..... +.+++ ++..|+-.++.||+|.||++|++|+ .++|++||+||+. ++.|||+.+.+..++|||
T Consensus 139 g-iyfge~r~eng~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP--- 213 (363)
T KOG0786|consen 139 G-IYFGEPRNENGEGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYP--- 213 (363)
T ss_pred c-eeecCcccCCCcceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCC---
Confidence 9 999987653 46788 7899999999999999999999997 7999999999998 999999999977778999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce--EEEecCCccchhhhhHhhhcCCcccccceecC----CCCceeeeeccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY--VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLS----SDGKTLEAEAAHGTVT 390 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F--ViVt~NlfGDILSDlaA~l~GslGlapSanig----~~~a~~~fEp~HGSAP 390 (476)
++++.|+|||+++||||++|.+| +|||.|+||||+||+++.+.|||||.||++++ .+....+|||+|||||
T Consensus 214 ---~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPiHGSAP 290 (363)
T KOG0786|consen 214 ---DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPIHGSAP 290 (363)
T ss_pred ---CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccCCcccccCCCCCC
Confidence 99999999999999999999999 99999999999999999999999999999997 1222569999999999
Q ss_pred cccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhh
Q 011846 391 RHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLL 470 (476)
Q Consensus 391 d~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~ 470 (476)
| |+||+ ++||+|+|||++|||+|- .+++++|++||+||.+++..|.+|.||||.. ++.++|.+-.+
T Consensus 291 D-----iagk~-kvNPlaTILSAamlLkyg------Ln~pkeakaIEdAV~kvLd~G~rTgDlgg~~--st~~~~kav~E 356 (363)
T KOG0786|consen 291 D-----IAGKD-KVNPLATILSAAMLLKYG------LNEPKEAKAIEDAVVKVLDKGFRTGDLGGPG--STLVGCKAVGE 356 (363)
T ss_pred C-----cCCCC-ccChHHHHHHHHHHHHhc------CCChhhHHHHHHHHHHHHhccccccccCCCC--cchhhHHHHHH
Confidence 9 99999 999999999999999993 2367899999999999999999999999955 46777887766
Q ss_pred cc
Q 011846 471 HV 472 (476)
Q Consensus 471 ~~ 472 (476)
.|
T Consensus 357 Ev 358 (363)
T KOG0786|consen 357 EV 358 (363)
T ss_pred HH
Confidence 54
No 32
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=97.43 E-value=0.0051 Score=67.65 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=128.9
Q ss_pred CceEEEEEecHHHHHHHHHHHHHHHHcCCCC-EEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HHH
Q 011846 253 PGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-IDD 330 (476)
Q Consensus 253 ~~va~~~~~Tr~~~eRIar~AFe~A~~r~kk-Vt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l-VDa 330 (476)
++++..+..-+.-++-.++.|.+.|+..+.+ |.-.|+.-. -| +++...| +.|=......|+.+.-+- +++
T Consensus 453 GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV--~~yL~~hdt~gldi~Im~p~~A 524 (741)
T TIGR00178 453 GDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKV--ETYLKDHDTEGLDIQILSPVEA 524 (741)
T ss_pred CcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHH
Confidence 4555333444667999999999999998865 444444321 12 3344454 245434445577777664 444
Q ss_pred HH--HHHHhCCCceEEEecCCccchhhhhHhhhc-CC----cccccceecCCCCceeeeec-cccccccccccccCCCCC
Q 011846 331 MV--AYAIKSEGGYVWACKNYDGDVQSDLLAQGF-GS----LGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQET 402 (476)
Q Consensus 331 ~a--~~LV~~P~~FViVt~NlfGDILSDlaA~l~-Gs----lGlapSanig~~~a~~~fEp-~HGSAPd~~~~~IaGk~~ 402 (476)
+- +.-+++-..-+-||.|..=|.|+||.--|= |. |.+.|=-| .| ++||. +-||||+|..|.+.-.--
T Consensus 525 ~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GG--GLFETGAGGSAPKHVqQf~eEnhL 599 (741)
T TIGR00178 525 TRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GLFETGAGGSAPKHVQQFLEENHL 599 (741)
T ss_pred HHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CC--ceecCCCCCCccHHHHHHHHcCcc
Confidence 33 233455555599999999999999987652 11 22223222 23 38898 578999999886432222
Q ss_pred ccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC-CCcccC
Q 011846 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLA 454 (476)
Q Consensus 403 iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLg 454 (476)
+=+.+|-+|+.+--|+|++...+|..-.-.|+.|.+|+.+.|++++ -.+-.|
T Consensus 600 RWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 600 RWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 5789999999999999999999999999999999999999999876 333344
No 33
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=97.26 E-value=0.015 Score=64.06 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=116.0
Q ss_pred CCceEEEEEecHHHHHHHHHHHHHHHHcCCCC-EEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEeH-H
Q 011846 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLI-D 329 (476)
Q Consensus 252 ~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kk-Vt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~lV-D 329 (476)
.+++...+..-+.-++-.++.|.+.||..+.+ |.-.|+.-. .=+++...| +.|=......|+.+.-+-- |
T Consensus 448 ~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA------HDa~lI~kV--~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 448 AGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA------HDAELIKKV--EKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH------HHHHHHHHH--HHHHTTS--TT--EEEE-HHH
T ss_pred CCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc------cHHHHHHHH--HHHHHhcCCCCCceEeeCHHH
Confidence 45677556666888999999999999988865 444554321 224555666 3565566667788777754 4
Q ss_pred HHHHHH--HhCCCceEEEecCCccchhhhhHhhh-cC-C---cccccceecCCCCceeeeec-cccccccccccccCCCC
Q 011846 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG-FG-S---LGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQE 401 (476)
Q Consensus 330 a~a~~L--V~~P~~FViVt~NlfGDILSDlaA~l-~G-s---lGlapSanig~~~a~~~fEp-~HGSAPd~~~~~IaGk~ 401 (476)
++-.-| ++.-..-+-||.|..=|.|+||.--| .| | |.+.|=- ..| ++||. +-||||+|..|.+.-.-
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm---~GG--GLFETGAGGSAPKHVqQf~eEnh 594 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---NGG--GLFETGAGGSAPKHVQQFVEENH 594 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBT---TS---EEEES-SS---HHHHHHHCCCS-
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcc---cCC--ceeccCCCCCccHHHHHHHHcCc
Confidence 443322 44445559999999999999998775 22 1 2222321 133 38898 67899999988653222
Q ss_pred CccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC
Q 011846 402 TSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (476)
Q Consensus 402 ~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (476)
-+=+.+|-+|+.+--|+|++...+|+.-.-.|+.|.+|+.+.|++++
T Consensus 595 LRWDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~k 641 (735)
T PF03971_consen 595 LRWDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNK 641 (735)
T ss_dssp ----THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 25789999999999999999999999999999999999999999876
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=94.68 E-value=0.098 Score=56.89 Aligned_cols=183 Identities=17% Similarity=0.169 Sum_probs=117.6
Q ss_pred ceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeE-eHHHHH
Q 011846 254 GIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDMV 332 (476)
Q Consensus 254 ~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~-lVDa~a 332 (476)
+++..+...+.-++..++.|.+.||..+-++..---.+ +..| ++....| +.|=+.-...|..+.-+ .+.+|-
T Consensus 456 DiwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd---~~li~kV--~~yLkdhdt~GldI~Ilsp~ea~~ 528 (744)
T COG2838 456 DIWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHD---KELIKKV--EAYLKDHDTNGLDIQILSPVEAMR 528 (744)
T ss_pred cHHHHHhcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccch---HHHHHHH--HHHhhhcCCCCcceEEecHHHHHH
Confidence 33333445667788899999999888776543321111 1112 2233333 23432222334444433 234443
Q ss_pred H--HHHhCCCceEEEecCCccchhhhhHhhhcCC-----cccccceecCCCCceeeeec-cccccccccccccCCCCCcc
Q 011846 333 A--YAIKSEGGYVWACKNYDGDVQSDLLAQGFGS-----LGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQKGQETST 404 (476)
Q Consensus 333 ~--~LV~~P~~FViVt~NlfGDILSDlaA~l~Gs-----lGlapSanig~~~a~~~fEp-~HGSAPd~~~~~IaGk~~iA 404 (476)
. ..+++-+.-+-||.|..-|.|+||.--+==| |.+.|=.| .| .|||. +-||||+|..|-..-.--.=
T Consensus 529 ~sl~rl~~G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlma---GG--gmfETGAGGSAPKhVqQ~~eENhLRW 603 (744)
T COG2838 529 YSLERLRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GG--GMFETGAGGSAPKHVQQLVEENHLRW 603 (744)
T ss_pred HHHHHHHcCCceeEecchHHHHHHhhhhhHhhcccccchheeeeecc---CC--ceeecCCCCCCcHHHHHHHHhcccch
Confidence 2 3345555668899999999999998765211 22222211 23 38998 57899999877432222246
Q ss_pred CcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC
Q 011846 405 NSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK 448 (476)
Q Consensus 405 NPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~ 448 (476)
+.+|-+|+.+--|+|+|..-+|..-.-.|+.|..|..+.+.+.+
T Consensus 604 DSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 604 DSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred hhHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999998765
No 35
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=89.41 E-value=0.22 Score=52.55 Aligned_cols=126 Identities=12% Similarity=0.051 Sum_probs=61.6
Q ss_pred CceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----c--CCceEE-EEEecHHHHHHHHHHHH-
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----K--GPGIAL-AMYNVDESIRAFAESSM- 274 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~--~~~va~-~~~~Tr~~~eRIar~AF- 274 (476)
.++||+||||||+|.|.|......-..++ ++.|+.+|- + -..-| . ...|.. .+-+--+.+.++-+.+|
T Consensus 134 iD~viVREnteG~Y~g~~~~~~~g~~~~~~v~Tr~~~eR-I--ar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~ 210 (360)
T PLN00123 134 VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSER-I--AKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCR 210 (360)
T ss_pred CCEEEEEeCCCceeccceeecCCCceEEEEEecHHHHHH-H--HHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHH
Confidence 68999999999999998864321112333 344443321 0 00001 1 122332 23333332344444444
Q ss_pred HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEee-Ee---HHHHHHHHHhCCCceEEEecCC
Q 011846 275 SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH-RL---IDDMVAYAIKSEGGYVWACKNY 349 (476)
Q Consensus 275 e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~-~l---VDa~a~~LV~~P~~FViVt~Nl 349 (476)
|.|++-. .|.+ .+-+-...+..+. .-|++| ||.+-. ++ +-+++..|+=..+ +...-|+
T Consensus 211 eva~eyP-dV~~---------~~~~VDa~~~~Lv--~~P~~f---DViVt~NlfGDILSDlaa~l~GglG--l~pSani 272 (360)
T PLN00123 211 EVAKKYP-GIKY---------NEIIVDNCCMQLV--SKPEQF---DVMVTPNLYGNLVANTAAGIAGGTG--VMPGGNV 272 (360)
T ss_pred HHHhhCC-CceE---------eeeeHHHHHHHHh--hCcccC---cEEEEcCcccchhhhHHHHhcCCcC--ccceEee
Confidence 6664322 1322 3445555666665 358888 665543 33 3355566643333 4455555
No 36
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=89.13 E-value=0.27 Score=50.71 Aligned_cols=136 Identities=17% Similarity=0.045 Sum_probs=66.6
Q ss_pred EecHHHHHHHHHHHHHHHHc-CC--CCEEEEECCCcccccchHHH-H----HHHHHHHhhhccccccCCeEEe-eEeHHH
Q 011846 260 YNVDESIRAFAESSMSLAFS-KK--WPLYLSTKNTILKKYDGRFK-D----IFQQVYEERWRQKFEEHSIWYE-HRLIDD 330 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~-r~--kkVt~v~KaNVlk~tdglf~-~----i~~eva~~eYp~~f~~~~I~~e-~~lVDa 330 (476)
.+|.+.+.+.++...+.-++ -+ ++-..|-==|==.--+|+|= | |.-.|.+.+-. +|.+. ..--|.
T Consensus 151 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~------gi~v~GP~paDt 224 (298)
T PF04166_consen 151 LITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAE------GIDVFGPYPADT 224 (298)
T ss_dssp H--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHT------THEEEEEE-HHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhC------CCceECCCccHH
Confidence 46777777777776554444 22 34334333342222245554 1 11111111112 66555 334455
Q ss_pred HHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhH
Q 011846 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (476)
Q Consensus 331 ~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~ 409 (476)
+-.+- .-++| ++|+ ||= |.+-.=+--+++--++|+.-.--..---|.||||-| ||||| +|||.+|
T Consensus 225 ~F~~~--~~~~fD~vva--MYH----DQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~~~s~ 290 (298)
T PF04166_consen 225 VFGKA--NRGKFDAVVA--MYH----DQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAFD-----IAGKG-IADPSSM 290 (298)
T ss_dssp HTSHH--HHTT-SEEEE--SSH----HHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-CC-----GTTTT-TS-THHH
T ss_pred hhhcc--hhccCCEEEE--eec----ccCccceeecccccceEEecCCCeeeecCCCCchhh-----hhCCC-CCChHHH
Confidence 44333 34566 5554 332 344333444555567776422111123589999999 99999 9999999
Q ss_pred HHHHHH
Q 011846 410 IFAWTR 415 (476)
Q Consensus 410 IlS~am 415 (476)
+-|.-+
T Consensus 291 ~~Ai~~ 296 (298)
T PF04166_consen 291 IEAIKL 296 (298)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 37
>PRK09222 isocitrate dehydrogenase; Validated
Probab=87.47 E-value=0.27 Score=53.70 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.7
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
..++||+||||||+|.|.|+.
T Consensus 114 ~iD~vIVRENtEG~Y~G~e~~ 134 (482)
T PRK09222 114 NLDVVIIRENEEDLYAGIEHR 134 (482)
T ss_pred CcCEEEEEeccCCeeccceee
Confidence 468999999999999999864
No 38
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=86.98 E-value=0.46 Score=49.60 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=75.5
Q ss_pred EecHHHHHHHHHHHHHHHHcCC--CCEEEEECCCcccccchHH-HHHHHHHHH--hhhccccccCCeEEe-eEeHHHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVYE--ERWRQKFEEHSIWYE-HRLIDDMVA 333 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r~--kkVt~v~KaNVlk~tdglf-~~i~~eva~--~eYp~~f~~~~I~~e-~~lVDa~a~ 333 (476)
.+|.+.+.+.++...+.-++-+ ++=..|-==|==.--.|+| +|..+.+.- ++.. +.++.++ ..--|.+-.
T Consensus 177 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~----~~G~~v~GP~paDt~F~ 252 (326)
T PRK03371 177 TLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMR----AKGMDVYGPCPPDTVFL 252 (326)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhhcc
Confidence 4788888888877766544222 2211222122222235777 443333220 1111 1133332 333444433
Q ss_pred HHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHH
Q 011846 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (476)
Q Consensus 334 ~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS 412 (476)
+-.+ ++| ++|| ||= |.+--=+-.+++--+.|+.-.--..---|-||||-| ||||| +|||.+|+-|
T Consensus 253 ~~~~--~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkG-~A~~~S~~~A 318 (326)
T PRK03371 253 QAYE--GQYDMVVA--MYH----DQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTG-KAKSESMAVS 318 (326)
T ss_pred cccc--cCCCEEEE--ccc----cccchhheecccccceEEecCCCeeEecCCCCchhh-----hhcCC-cCCHHHHHHH
Confidence 3222 567 5555 332 344444556677778887532111122488999999 99999 9999999988
Q ss_pred HHHHHH
Q 011846 413 WTRGLE 418 (476)
Q Consensus 413 ~amML~ 418 (476)
.-+..+
T Consensus 319 i~lA~~ 324 (326)
T PRK03371 319 IKLAMQ 324 (326)
T ss_pred HHHHHH
Confidence 766543
No 39
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=86.30 E-value=0.77 Score=48.03 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=59.0
Q ss_pred CceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----cC------CceEEE-EEecHHHHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----KG------PGIALA-MYNVDESIRAFAE 271 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~~------~~va~~-~~~Tr~~~eRIar 271 (476)
.++||+||||||+|.|.++.....-..++ +|.|+.++- + -..-| .. ..|... +-|--+.+.++-+
T Consensus 106 iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~R-i--~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~ 182 (330)
T PRK14025 106 IDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASER-I--FRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFK 182 (330)
T ss_pred cCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHH-H--HHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHH
Confidence 68999999999999998864321112232 244433221 0 00000 01 123322 3343344556666
Q ss_pred HHH-HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEe-eEe---HHHHHHHHHhCCC
Q 011846 272 SSM-SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYE-HRL---IDDMVAYAIKSEG 340 (476)
Q Consensus 272 ~AF-e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e-~~l---VDa~a~~LV~~P~ 340 (476)
.+| |.|++-. .|.+ -+-+-...+..+. .-|.+| ||-+- .++ +.+++..|+=+.+
T Consensus 183 e~~~eva~~yp-~i~~---------~~~~vDa~~~~lv--~~P~~f---DVivt~NlfGDILSDlaa~l~GglG 241 (330)
T PRK14025 183 KTFYEVAKEYP-DIKA---------EDYYVDAMNMYII--TRPQTF---DVVVTSNLFGDILSDGAAGLVGGLG 241 (330)
T ss_pred HHHHHHHhhCC-CeEE---------EeeeHHHHHHHHh--cCcccC---cEEEEcCcccchhhHHHHHhcCCCC
Confidence 666 5554322 2433 2334444555555 237777 66554 343 4566666664444
No 40
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=85.69 E-value=0.59 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.6
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
..++||+||||||+|.|.|+.
T Consensus 146 ~vDivIvREnteG~Y~g~~~~ 166 (416)
T TIGR00183 146 KVDMVIFRENTEDIYAGIEWA 166 (416)
T ss_pred CCCEEEEEeCCCCcccccccc
Confidence 368999999999999999864
No 41
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=85.46 E-value=0.93 Score=47.47 Aligned_cols=142 Identities=15% Similarity=0.031 Sum_probs=76.2
Q ss_pred EecHHHHHHHHHHHHHHHHcCC--CCEEEEECCCcccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMVA 333 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r~--kkVt~v~KaNVlk~tdglf-~~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa~a~ 333 (476)
.+|.+.+.+.++..-+.-++.+ ++-..|-==|==.--.|+| +|--+.+. -++.. +.++.++ ..--|.+-.
T Consensus 178 ~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt~F~ 253 (332)
T PRK00232 178 AITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELR----AEGINLVGPLPADTLFQ 253 (332)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHH----hCCCCcCCCCCchhhcc
Confidence 5788888888888777555333 2212222223222224677 33222211 00110 1133322 333444433
Q ss_pred HHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHH
Q 011846 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (476)
Q Consensus 334 ~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS 412 (476)
+-.+ +.| ++|+ ||= |.+--=+--+++--++|+.-.--..---|-||||-| ||||| +|||.+|+-|
T Consensus 254 ~~~~--~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-----IAGkg-~A~~~S~~~A 319 (332)
T PRK00232 254 PAYL--GDADAVLA--MYH----DQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALD-----LAGKG-IADVGSFITA 319 (332)
T ss_pred cccc--CCCCEEEE--Ccc----cccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHHHH
Confidence 3332 467 5555 332 344334555666678887532211122488999999 99999 9999999988
Q ss_pred HHHHHHH
Q 011846 413 WTRGLEH 419 (476)
Q Consensus 413 ~amML~h 419 (476)
.-+..+.
T Consensus 320 i~lA~~~ 326 (332)
T PRK00232 320 LNLAIRM 326 (332)
T ss_pred HHHHHHH
Confidence 8776543
No 42
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=85.44 E-value=0.6 Score=48.97 Aligned_cols=141 Identities=16% Similarity=0.061 Sum_probs=75.6
Q ss_pred EecHHHHHHHHHHHHHHHHcC-C--C-CEEEEECCCcccccchHH-HHHHHHHHH--hhhccccccCCeEEe-eEeHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVYE--ERWRQKFEEHSIWYE-HRLIDDM 331 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r-~--k-kVt~v~KaNVlk~tdglf-~~i~~eva~--~eYp~~f~~~~I~~e-~~lVDa~ 331 (476)
.+|.+.+.+.++.+.+.-+++ + + |+-+ -==|==.--.|+| +|-.+.+.- ++.. +.++.++ ..--|.+
T Consensus 182 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV-~GLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~Gi~v~GP~paDt~ 256 (336)
T PRK05312 182 ALTPELIVATARITAADLRRRFGIASPRLAV-AGLNPHAGEGGALGREDIDIIAPAIEQLR----AEGIDARGPLPADTM 256 (336)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEE-EeeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchhh
Confidence 478888888888888765532 2 2 2322 1122212225677 332222210 1111 0133222 2333444
Q ss_pred HHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHH
Q 011846 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (476)
Q Consensus 332 a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~I 410 (476)
-.+-.. ++| ++|+ ||= |.+-.-+-.+|+--+.|+.-.--..---|-||||-| ||||| +|||.+|+
T Consensus 257 F~~~~~--~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkg-~A~~~S~~ 322 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--MYH----DQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFD-----IAGKG-IARPDSLI 322 (336)
T ss_pred cccccc--cCCCEEEE--ccc----ccCChhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 333222 467 5555 332 344444555666677887532111122488999999 99999 99999999
Q ss_pred HHHHHHHHH
Q 011846 411 FAWTRGLEH 419 (476)
Q Consensus 411 lS~amML~h 419 (476)
-|.-+..+.
T Consensus 323 ~Ai~lA~~~ 331 (336)
T PRK05312 323 AALRLAAQM 331 (336)
T ss_pred HHHHHHHHH
Confidence 888776553
No 43
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=84.88 E-value=0.94 Score=47.42 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=18.1
Q ss_pred CceEeeecccCCcccccccc
Q 011846 204 KPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~ 223 (476)
.+++|+||||||+|.|.|+.
T Consensus 111 iD~vivREnteG~Y~g~~~~ 130 (333)
T TIGR00175 111 VDIVIIRENTEGEYSGLEHE 130 (333)
T ss_pred cCEEEEEEeCCCcccceeEe
Confidence 68999999999999998864
No 44
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=84.80 E-value=0.67 Score=48.28 Aligned_cols=139 Identities=13% Similarity=0.005 Sum_probs=73.6
Q ss_pred EecHHHHHHHHHHHHHHHHcC-C--C-CEEEEECCCcccccchHH-HHHHHHHHH--hhhccccccCCeEEe-eEeHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVYE--ERWRQKFEEHSIWYE-HRLIDDM 331 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r-~--k-kVt~v~KaNVlk~tdglf-~~i~~eva~--~eYp~~f~~~~I~~e-~~lVDa~ 331 (476)
.+|.+.+.+-++.+.+.-++. + + |+-+ -==|==.--.|+| +|-.+.+.- ++.. +.++.++ ..--|.+
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV-~gLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~G~~v~GP~paDt~ 244 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAV-AGLNPHAGEGGHLGREEIDIIIPALEALR----AEGIDLIGPLPADTL 244 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEE-EecCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhh
Confidence 478888888888887766532 2 2 2322 1122112225677 332222210 1111 0133322 2333443
Q ss_pred HHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHH
Q 011846 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (476)
Q Consensus 332 a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~I 410 (476)
-.+-. -++| ++|| ||= |.+-.=+-.+++--+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 245 F~~~~--~~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfD-----IAGkg-~A~~~S~~ 310 (320)
T TIGR00557 245 FHPAA--LAKYDAVLA--MYH----DQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFD-----IAGKG-KADPGSLI 310 (320)
T ss_pred ccccc--ccCCCEEEE--Ccc----cccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 33322 2567 5555 332 344444555666677887532111122488999999 99999 99999998
Q ss_pred HHHHHHH
Q 011846 411 FAWTRGL 417 (476)
Q Consensus 411 lS~amML 417 (476)
-|.-+..
T Consensus 311 ~Ai~~A~ 317 (320)
T TIGR00557 311 AAIKLAI 317 (320)
T ss_pred HHHHHHH
Confidence 8776544
No 45
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=84.75 E-value=0.53 Score=49.95 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.4
Q ss_pred cccccccCCCceEEEEecCCCCCCeeeeeeee
Q 011846 219 ATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF 250 (476)
Q Consensus 219 ~~e~~~~~~~~iDlvivREnteG~~Y~g~~~~ 250 (476)
|+.--.+.|+.+|+||.|||+|. +|.|++-.
T Consensus 126 gvPspvk~pe~~dmVIfRenteD-iYagiE~~ 156 (407)
T COG0538 126 GVPSPVKRPEKVDMVIFRENTED-IYAGIEWK 156 (407)
T ss_pred CCCCCCCCcccCCeEEEeccccc-hhheeeec
Confidence 43333456789999999999999 99998753
No 46
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=84.49 E-value=0.67 Score=48.32 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=60.4
Q ss_pred CCceEeeecccCCccccccccccCCCceEEE-EecCCCCCCeeeeeeee----c-CCceEE-EEEecHHHHHHHHHHHH-
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGPGKLKMV-FDPEDGTGPVELDVYNF----K-GPGIAL-AMYNVDESIRAFAESSM- 274 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~~~iDlv-ivREnteG~~Y~g~~~~----~-~~~va~-~~~~Tr~~~eRIar~AF- 274 (476)
..++||+||||||+|.|.++...+ ...++- +.|+.+|- .-..-| . ...|.. .+-+--+.+..+-+..|
T Consensus 107 ~iD~vivREnteG~Y~g~~~~~~~-~a~~~~~~tr~~~eR---i~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~ 182 (322)
T TIGR02088 107 GKDIVIVRENTEGLYAGFEFGFSD-RAIAIRVITREGSER---IARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCR 182 (322)
T ss_pred CCCEEEEEeCcCCeeeccccccCc-ceEEEEEecHHHHHH---HHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHH
Confidence 478999999999999999863211 234443 33432221 000001 0 112332 23343444555555555
Q ss_pred HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEee-Ee---HHHHHHHHHhCCC
Q 011846 275 SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH-RL---IDDMVAYAIKSEG 340 (476)
Q Consensus 275 e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~-~l---VDa~a~~LV~~P~ 340 (476)
|.|++ .+|.+ .+-+...++..+- .-|.+| ||.+-. ++ +-+.++.|+=+.+
T Consensus 183 eva~~--ypv~~---------~~~~vDa~~~~lv--~~P~~f---dViv~~NlfGDIlSDlaa~l~GglG 236 (322)
T TIGR02088 183 EIAKR--YGVEY---------RDMYVDSAAMNLV--KDPWRF---DVIVTTNMFGDILSDLASALAGSLG 236 (322)
T ss_pred HHHHh--CCeee---------eeeeHHHHHHHHh--hCCcCc---eEEEecCcccchhhHHHHhhcCCCC
Confidence 55543 33433 2334455566665 347777 665543 33 3456666665555
No 47
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=84.48 E-value=1.1 Score=46.94 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred EEecHHHHHHHHHHHHHHHHcCC--C-CEEEEECCCcccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHH
Q 011846 259 MYNVDESIRAFAESSMSLAFSKK--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDM 331 (476)
Q Consensus 259 ~~~Tr~~~eRIar~AFe~A~~r~--k-kVt~v~KaNVlk~tdglf-~~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa~ 331 (476)
..+|.+.+.+.++.+.+.-++-+ + |+- |-==|==.--.|+| +|..+-+. -++.. +.++.++ ..--|.+
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIa-V~GLNPHAGE~G~~G~EE~~iI~PAI~~~~----~~g~~v~GP~paDt~ 251 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIA-VAGLNPHSGEHGLFGDEEVDEIIPAVEAAQ----EMGINVEGPVPADSV 251 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEE-EEeeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchhh
Confidence 35788899988888887666323 2 232 22122222235777 33222221 01111 1133333 3334544
Q ss_pred HHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHH
Q 011846 332 VAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 410 (476)
Q Consensus 332 a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~I 410 (476)
-.+-.+ ++| ++|| ||= |.+---+-.+++-.+.|+.-.--..---|-||||-| ||||| +|||.+++
T Consensus 252 F~~~~~--~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~~~S~~ 317 (332)
T PRK03743 252 FHLALQ--GRYDAVLS--LYH----DQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFD-----IAGTG-KASSVSME 317 (332)
T ss_pred cccccc--cCCCEEEE--ccc----ccCChhheecccCCceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHHH
Confidence 333332 467 5555 332 344444556666678887532111122488999999 99999 99999999
Q ss_pred HHHHHHHHH
Q 011846 411 FAWTRGLEH 419 (476)
Q Consensus 411 lS~amML~h 419 (476)
-|.-+..+.
T Consensus 318 ~Ai~lA~~~ 326 (332)
T PRK03743 318 EAILLAAKY 326 (332)
T ss_pred HHHHHHHHH
Confidence 888776554
No 48
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=84.20 E-value=0.99 Score=47.97 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=18.1
Q ss_pred CceEeeecccCCcccccccc
Q 011846 204 KPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~ 223 (476)
.++||+||||||+|.|.|+.
T Consensus 150 iD~vIVREnteG~Y~g~~~~ 169 (372)
T PLN00118 150 VDLVTIRENTEGEYSGLEHQ 169 (372)
T ss_pred ceEEEEEecCCCcccceeee
Confidence 68999999999999998864
No 49
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=84.17 E-value=1.2 Score=46.88 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=17.5
Q ss_pred CceEeeecccCCccccccc
Q 011846 204 KPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~ 222 (476)
.+|||+||||||+|.|.+.
T Consensus 120 ~D~viVREnTeG~Y~G~~~ 138 (348)
T COG0473 120 VDIVIVRENTEGLYFGEEG 138 (348)
T ss_pred ccEEEEeeCCCccccCCCc
Confidence 6899999999999999876
No 50
>PRK06451 isocitrate dehydrogenase; Validated
Probab=84.12 E-value=0.69 Score=49.76 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.1
Q ss_pred CCceEeeecccCCccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~ 222 (476)
..++||+||||||+|.|.++
T Consensus 141 ~iD~vIvREnTeG~Y~g~~~ 160 (412)
T PRK06451 141 KIDLIIFRENTDDLYRGIEY 160 (412)
T ss_pred CccEEEEEeccCCeeecccc
Confidence 47899999999999999985
No 51
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=83.78 E-value=1.1 Score=46.68 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=37.9
Q ss_pred hHhhhcCCcccccceecCCCCcee-eeeccccccccccccccCCCCCccCcHhHHHHHHHHHH
Q 011846 357 LLAQGFGSLGLMTSVLLSSDGKTL-EAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (476)
Q Consensus 357 laA~l~GslGlapSanig~~~a~~-~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~ 418 (476)
.+---.-=+|+--|.|+.-+- +| ---|-||||-| ||||| +|||.+++-|..+.-+
T Consensus 269 QgliplK~l~Fd~~VNvtlGL-PfiRTS~DHGTAfD-----iAgkG-iA~~~S~~~Ai~lA~~ 324 (332)
T COG1995 269 QGLIPLKYLGFDRGVNVTLGL-PFIRTSVDHGTAFD-----IAGKG-IADPGSLIAAIKLAAK 324 (332)
T ss_pred ccchhhhhhccccceEEecCC-CeeeecCCccchhh-----hhcCC-cCCchHHHHHHHHHHH
Confidence 333334446666788886332 22 22488999999 99999 9999999877665443
No 52
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=83.73 E-value=1.2 Score=46.53 Aligned_cols=142 Identities=9% Similarity=-0.073 Sum_probs=79.1
Q ss_pred EEecHHHHHHHHHHHHHHHHcC-C--C-CEEEEECCCcccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHH
Q 011846 259 MYNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDD 330 (476)
Q Consensus 259 ~~~Tr~~~eRIar~AFe~A~~r-~--k-kVt~v~KaNVlk~tdglf-~~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa 330 (476)
..+|.+.+.+.++...+.-+++ + + |+-+ -==|==.--+|+| +|-.+.+. -++.. +.++.++ ..--|.
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV-~GLNPHAGE~G~~G~EE~~iI~PAi~~~~----~~Gi~v~GP~paDt 246 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILV-TGLNPHAGENGYLGREEIDVIEPALARAR----AAGIDARGPYPADT 246 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEE-EeeCCCCCCCCCCcHHHHHHHHHHHHHHH----HCCCCccCCCCchh
Confidence 3578899999998888765532 2 2 2322 1122212235777 43332221 01111 1133322 334455
Q ss_pred HHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhH
Q 011846 331 MVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 409 (476)
Q Consensus 331 ~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~ 409 (476)
+-.+..+ +.| ++|+ ||= |.+---+-.+++--++|+.-.--..---|-||||-| ||||| +|||.+|
T Consensus 247 ~F~~~~~--~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkg-~A~~~S~ 312 (329)
T PRK01909 247 LFQPRYL--EDADCVLA--MFH----DQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALD-----LAGTG-RADPGSM 312 (329)
T ss_pred hcccccc--cCCCEEEE--ccc----cccchhheecccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCCHHHH
Confidence 4444333 467 5555 332 344444556777778887532111122488999999 99999 9999999
Q ss_pred HHHHHHHHHH
Q 011846 410 IFAWTRGLEH 419 (476)
Q Consensus 410 IlS~amML~h 419 (476)
+-|.-+..+.
T Consensus 313 ~~Ai~lA~~~ 322 (329)
T PRK01909 313 IAAIDTAVTM 322 (329)
T ss_pred HHHHHHHHHH
Confidence 9887766544
No 53
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=83.24 E-value=1.3 Score=46.61 Aligned_cols=146 Identities=13% Similarity=-0.009 Sum_probs=77.7
Q ss_pred EecHHHHHHHHHHHHHHHHcC-C--CCEEEEECCCcccccchHH-HHHHHHHH--HhhhccccccCCeEEe-eEeHHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSK-K--WPLYLSTKNTILKKYDGRF-KDIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMV 332 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r-~--kkVt~v~KaNVlk~tdglf-~~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa~a 332 (476)
.+|.+.+.+.++.+.+.-+++ + ++=..|-==|==.--.|+| +|-.+.+. -++...+- .++.++ ..=-|.+-
T Consensus 180 ~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAIe~~r~~g--~g~~v~GP~paDt~F 257 (345)
T PRK02746 180 TLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGEQGQLGTEEKDWLIPWLESWRQKN--PDIQLLGPIPPDTCW 257 (345)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHhcC--CCceeeCCCCchhhc
Confidence 467888888777776644422 2 3212222223222225666 33222211 01111000 024443 34455555
Q ss_pred HHHHhC------CCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccC
Q 011846 333 AYAIKS------EGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTN 405 (476)
Q Consensus 333 ~~LV~~------P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iAN 405 (476)
.+..+. .+.| ++|| ||= |.+-.=+--+++-.++|+.-.--..---|-||||-| ||||| +||
T Consensus 258 ~~~~~~~~~~~~~~~~D~vva--MYH----DQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfD-----IAGkg-~A~ 325 (345)
T PRK02746 258 VSPAQAWYGKGVAEAPDGYLA--LYH----DQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFD-----IAGKG-IAR 325 (345)
T ss_pred cccccccccccccCCCCEEEE--Ccc----cCCChhheeeccCcceEEecCCCeeEeCCCCcchhh-----hhcCC-CCC
Confidence 554432 2568 6666 333 344444555667778887532111122488999999 99999 999
Q ss_pred cHhHHHHHHHHHHH
Q 011846 406 SIASIFAWTRGLEH 419 (476)
Q Consensus 406 PiA~IlS~amML~h 419 (476)
|.+|+-|.-+..+.
T Consensus 326 ~~S~~~Ai~lA~~l 339 (345)
T PRK02746 326 PQSMKAAIKLAWEL 339 (345)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776543
No 54
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=82.77 E-value=0.89 Score=48.89 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCceEeeecccCCccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~ 222 (476)
..++||+||||||+|.|.++
T Consensus 139 ~iD~vIvREnteG~Y~g~~~ 158 (409)
T PRK07006 139 DTDMVIFRENSEDIYAGIEW 158 (409)
T ss_pred CCCEEEEEeccCCeeccccc
Confidence 36899999999999999985
No 55
>PRK07362 isocitrate dehydrogenase; Validated
Probab=82.60 E-value=0.88 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=18.4
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
..++||+||||||+|.|.++.
T Consensus 148 ~iD~vIvRENTEGlY~G~~~~ 168 (474)
T PRK07362 148 KLDVIVYRENTEDIYMGIEWE 168 (474)
T ss_pred CCCEEEEEECCCceecccccc
Confidence 478999999999999998753
No 56
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=82.50 E-value=0.9 Score=47.62 Aligned_cols=127 Identities=10% Similarity=0.088 Sum_probs=61.8
Q ss_pred CCceEeeecccCCccccccccccCC--CceEE-EEecCCCCCCeeeeeeee----cC--CceEE-EEEecHHHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGP--GKLKM-VFDPEDGTGPVELDVYNF----KG--PGIAL-AMYNVDESIRAFAES 272 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~--~~iDl-vivREnteG~~Y~g~~~~----~~--~~va~-~~~~Tr~~~eRIar~ 272 (476)
..+++|+||||||+|.|.++..... -..|+ ++.|+.+|- .-..-| .. +.|.. .+-|--+.+.++-+.
T Consensus 110 ~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eR---i~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~ 186 (334)
T PRK08997 110 NIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAER---IVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLK 186 (334)
T ss_pred CcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHH---HHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHH
Confidence 3689999999999999987532111 12333 233332221 000001 01 22332 243444445555555
Q ss_pred HH-HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEee-Ee---HHHHHHHHHhCCCceEEEec
Q 011846 273 SM-SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH-RL---IDDMVAYAIKSEGGYVWACK 347 (476)
Q Consensus 273 AF-e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~-~l---VDa~a~~LV~~P~~FViVt~ 347 (476)
+| |.|++-. .|.+ .+-+-...+..+. .-|.+| ||-+-. ++ +-+++..|+=.++ +...-
T Consensus 187 ~~~eva~~yP-~V~~---------~~~~vDa~~~~lv--~~P~~f---dVivt~NlfGDILSDlaa~l~GglG--l~psa 249 (334)
T PRK08997 187 VAREVALRYP-DIEF---------EEMIVDATCMQLV--MNPEQF---DVIVTTNLFGDILSDLCAGLVGGLG--MAPGA 249 (334)
T ss_pred HHHHHHhhCC-CeEE---------EeeeHHHHHHHHh--hCcccC---cEEEEcCcccchhhHHHHHhcCCCC--cCcce
Confidence 55 6664322 2433 2334444555555 248777 665543 33 4456666654443 33444
Q ss_pred CC
Q 011846 348 NY 349 (476)
Q Consensus 348 Nl 349 (476)
|+
T Consensus 250 ni 251 (334)
T PRK08997 250 NI 251 (334)
T ss_pred eE
Confidence 44
No 57
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=81.64 E-value=1.1 Score=47.25 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=17.0
Q ss_pred CCceEeeecccCCcccccc
Q 011846 203 KKPICIGRHAFGDQYRATD 221 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e 221 (476)
..+++|+||||||+|.|.+
T Consensus 121 ~iD~vivREnteG~Y~g~~ 139 (344)
T PRK03437 121 DIDFVVVREGTEGPYTGNG 139 (344)
T ss_pred CCCEEEEEECCCccccCCc
Confidence 3689999999999999976
No 58
>PRK08299 isocitrate dehydrogenase; Validated
Probab=81.59 E-value=1.6 Score=46.79 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=37.4
Q ss_pred CCCceEeeecccCCcccccccc--------ccCCCceEEEEecCCCCCCeeeeeeeecCCceEEE-EEecHHH
Q 011846 202 WKKPICIGRHAFGDQYRATDTV--------IKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA-MYNVDES 265 (476)
Q Consensus 202 ~~~pivi~Re~ted~Y~~~e~~--------~~~~~~iDlvivREnteG~~Y~g~~~~~~~~va~~-~~~Tr~~ 265 (476)
+.+|++..|... |+|...... .++- .-+++|+|||||| +|.|++.....+.+.+ ++.+.++
T Consensus 92 ~~s~n~~LRk~l-dLyaNiRPv~~k~i~~~~pg~-~~~ivivREnTEg-~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 92 WKSPNGTIRNIL-GGTVFREPIICKNVPRLVPGW-TKPIVIGRHAYGD-QYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred ccCchHHHHHHc-CCeEEEEeeecccccccCCCC-CCCEEEEecccCC-cccceeEEeccCccceeeeecCCC
Confidence 456666677665 346555432 2221 2369999999999 9999876543444533 4445554
No 59
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=80.99 E-value=1.3 Score=46.03 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=51.6
Q ss_pred eEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCc
Q 011846 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETS 403 (476)
Q Consensus 325 ~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~i 403 (476)
..--|.+-.+-.+ ++| ++|+ ||= |.+--=+-.+++--++|+.-.--..---|-||||-| |||||.+
T Consensus 221 P~paDt~F~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAfD-----IAGkg~~ 287 (307)
T PRK03946 221 PLVPDSAFTPNKR--KKFNYYVA--MYH----DQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFD-----IAYKNAK 287 (307)
T ss_pred CcCchhhcccccc--cCCCEEEE--Ccc----ccCchhheeeccCcceEEecCCCEeEecCCCCchhh-----hcCCCCc
Confidence 4455555444322 577 6665 333 343334555666677887532111122488999999 9999889
Q ss_pred cCcHhHHHHHHHHHHH
Q 011846 404 TNSIASIFAWTRGLEH 419 (476)
Q Consensus 404 ANPiA~IlS~amML~h 419 (476)
|||.+|+-|.-+..+.
T Consensus 288 A~~~S~~~Ai~lA~~~ 303 (307)
T PRK03946 288 ANTKSYLNAIKYAINL 303 (307)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999887765543
No 60
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=80.78 E-value=0.98 Score=47.42 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=62.8
Q ss_pred CceEeeecccCCccccccccccCC-----CceEE-EEecCCCCCCeeeeeeee-----c-CCceEEE-EEecHHHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGP-----GKLKM-VFDPEDGTGPVELDVYNF-----K-GPGIALA-MYNVDESIRAFA 270 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~-----~~iDl-vivREnteG~~Y~g~~~~-----~-~~~va~~-~~~Tr~~~eRIa 270 (476)
.+|+|+||||||+|.|.|+..... ..+|+ ++.|+.++- + -..-| . ...|... +-+--+.++-+.
T Consensus 121 iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~~~~eR-i--~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~lf~ 197 (348)
T PF00180_consen 121 IDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITREGIER-I--ARFAFEYARKRGRKKVTVVHKANVLKSTDLFR 197 (348)
T ss_dssp SEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTTSEEEEEESTTTSTTHHHHH
T ss_pred ceEEEecccccCcccCCCCceeeccCCCceEEEeeccccchhhH-H--HHHHHHHHHHhCCceEEEEeccchhHHHHHHH
Confidence 789999999999999999865431 13343 233332211 0 00001 1 1224333 444444455778
Q ss_pred HHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCC
Q 011846 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEG 340 (476)
Q Consensus 271 r~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~ 340 (476)
+.+.|.|++.--.|.+- .-+-...+..+- ..|.+| ||.+-.-+ +-+.+..|+-.++
T Consensus 198 ~~~~eva~~~yp~I~~~---------~~~vD~~~~~Lv--~~P~~f---dViv~~Nl~GDIlSDl~a~l~G~lG 257 (348)
T PF00180_consen 198 EVFQEVAKQEYPDIEVE---------HMLVDAAAMQLV--KNPEQF---DVIVTPNLFGDILSDLAAGLVGGLG 257 (348)
T ss_dssp HHHHHHHHHTHTTSEEE---------EEEHHHHHHHHH--HSGGGE---SEEEEEHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHhhcceeEee---------eeechhhhheee--cCCcce---eEEeecchhHHHHHHHhhhcCCChh
Confidence 88888888431123321 122334445554 357777 77665442 2345566665554
No 61
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=80.44 E-value=1.6 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
..++||+||||||+|.|+|+.
T Consensus 110 ~vDiVIVRENtEGlY~G~e~~ 130 (473)
T TIGR02924 110 NLNIVIVRENEEDLYTGIEYR 130 (473)
T ss_pred CcCEEEEEeccCceecCceee
Confidence 368999999999999999864
No 62
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=79.31 E-value=1.3 Score=46.89 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=60.9
Q ss_pred CCceEeeecccCCccccccccccC--C--CceEE-EEecCCCCCCeeeeeeee----c-CCceEE-EEEecHHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKG--P--GKLKM-VFDPEDGTGPVELDVYNF----K-GPGIAL-AMYNVDESIRAFAE 271 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~--~--~~iDl-vivREnteG~~Y~g~~~~----~-~~~va~-~~~~Tr~~~eRIar 271 (476)
..++||+||||||+|.|.+..... + ..+++ +|.|+.++- + -..-| . ...|.. .+-+--+ +.++-+
T Consensus 127 ~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~iTr~~~~R-i--~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~ 202 (358)
T PRK00772 127 GLDILIVRELTGGIYFGEPRGREGLGGEERAFDTMVYTREEIER-I--ARVAFELARKRRKKVTSVDKANVLE-SSRLWR 202 (358)
T ss_pred CccEEEEecccCCeecCCcccccCCCCceeEEEEEEeeHHHHHH-H--HHHHHHHHHHcCCcEEEEECccccc-cchHHH
Confidence 368999999999999998643221 1 12243 344443321 0 00001 0 123332 2333222 346666
Q ss_pred HHH-HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEee-Ee---HHHHHHHHHhCCCce
Q 011846 272 SSM-SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH-RL---IDDMVAYAIKSEGGY 342 (476)
Q Consensus 272 ~AF-e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~-~l---VDa~a~~LV~~P~~F 342 (476)
.+| |.|++-. .|.+ .+-+-...+..+. ..|.+| ||.+-. ++ +-+++..|+=.++-.
T Consensus 203 ~~~~eva~eyp-~i~~---------~~~~vDa~~~~lv--~~P~~f---DViv~~NlfGDIlSDlaa~l~GglGl~ 263 (358)
T PRK00772 203 EVVTEVAKEYP-DVEL---------SHMYVDNAAMQLV--RNPKQF---DVIVTENLFGDILSDEAAMLTGSLGML 263 (358)
T ss_pred HHHHHHHhHCC-CceE---------EEEeHHHHHHHHh--hCcccC---eEEeecCcccccccHHHHHhcCCCCCC
Confidence 666 5665322 2433 2234444555555 347777 665543 32 446777777666644
No 63
>PRK08194 tartrate dehydrogenase; Provisional
Probab=79.15 E-value=1.4 Score=46.44 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCceEeeecccCCccccccccccC-CC--ceEE-EEecCCCCCCeeeeeeee----cC-CceEE-EEEecHHHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKG-PG--KLKM-VFDPEDGTGPVELDVYNF----KG-PGIAL-AMYNVDESIRAFAES 272 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~-~~--~iDl-vivREnteG~~Y~g~~~~----~~-~~va~-~~~~Tr~~~eRIar~ 272 (476)
..++||+||||||+|.|.+..... .. .+|+ ++.|+.+|- + -..-| .. ..|.. .+-|--+.+.++-+.
T Consensus 123 ~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~~~eR-I--~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~ 199 (352)
T PRK08194 123 DFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRKGTER-A--MRYAFELAAKRRKHVTSATKSNGIVHSMPFWDE 199 (352)
T ss_pred CCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHHHHHH-H--HHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHH
Confidence 368999999999999987633211 11 2344 344443321 0 00001 01 22332 233443445566666
Q ss_pred HH-HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEe-eEe---HHHHHHHHHhCCCceEEEec
Q 011846 273 SM-SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYE-HRL---IDDMVAYAIKSEGGYVWACK 347 (476)
Q Consensus 273 AF-e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e-~~l---VDa~a~~LV~~P~~FViVt~ 347 (476)
.| |.|++-. .|.+ .+-+...++..+. .-|.+| ||-+- .++ +-++++.|+=.++ +.-.-
T Consensus 200 ~~~eva~~yp-~V~~---------~~~~vDa~~~~Lv--~~P~~f---DVIVt~NlfGDILSDlaa~l~GslG--l~pSa 262 (352)
T PRK08194 200 VFQEVGKDYP-EIET---------DSQHIDALAAFFV--TRPEEF---DVIVASNLFGDILTDIGAAIMGSIG--IAPAA 262 (352)
T ss_pred HHHHHHhhCC-Ccee---------eehhHHHHHHHHh--hChhhC---cEEEEccchHHHHhHHHHHhcCCcc--cccee
Confidence 66 4554322 2332 2223334446665 347777 76554 344 3355566643333 45556
Q ss_pred CCc
Q 011846 348 NYD 350 (476)
Q Consensus 348 Nlf 350 (476)
|+-
T Consensus 263 nig 265 (352)
T PRK08194 263 NIN 265 (352)
T ss_pred eec
Confidence 663
No 64
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=78.08 E-value=1.1 Score=47.23 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCceEeeecccCCccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~ 222 (476)
..++||+||||||+|.|.+.
T Consensus 124 ~iD~vivREntEG~Y~g~~~ 143 (349)
T TIGR00169 124 GVDFVVVRELTGGIYFGEPK 143 (349)
T ss_pred CceEEEEeeccCCeecCCCc
Confidence 36899999999999999875
No 65
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=77.03 E-value=1.7 Score=45.26 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=17.8
Q ss_pred CceEeeecccCCcccccccc
Q 011846 204 KPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~ 223 (476)
.++|++||||||.|+|+|-.
T Consensus 144 vD~V~IRENTEgeYsgiEh~ 163 (365)
T KOG0785|consen 144 VDLVIIRENTEGEYSGIEHQ 163 (365)
T ss_pred ceEEEEecCCccccccceee
Confidence 67999999999999998853
No 66
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=76.54 E-value=1.9 Score=45.60 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=17.5
Q ss_pred CCceEeeecccCCccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~ 222 (476)
..++||+||||||+|.|.+.
T Consensus 125 ~iD~vivREnteG~Y~G~~~ 144 (352)
T TIGR02089 125 DFDFVVVRENSEGEYSGVGG 144 (352)
T ss_pred CCCEEEEEecCCcccccccc
Confidence 36899999999999999863
No 67
>PLN02329 3-isopropylmalate dehydrogenase
Probab=75.54 E-value=1.4 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCceEeeecccCCcccccc
Q 011846 203 KKPICIGRHAFGDQYRATD 221 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e 221 (476)
..++||+||||||+|.|.+
T Consensus 171 ~iD~vIVREnTEG~Y~G~~ 189 (409)
T PLN02329 171 GVDMMIVRELTGGIYFGEP 189 (409)
T ss_pred CceEEEEEECCCCeecCCC
Confidence 3689999999999999986
No 68
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=74.95 E-value=2.1 Score=45.03 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=60.2
Q ss_pred CceEeeecccCCccccccccccCCCceEE--EEecCCCCCCeeeeeeee----c--CCceE-----EEEEecHHHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM--VFDPEDGTGPVELDVYNF----K--GPGIA-----LAMYNVDESIRAFA 270 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl--vivREnteG~~Y~g~~~~----~--~~~va-----~~~~~Tr~~~eRIa 270 (476)
.+|||.||||||.|++.|-... |+-++- |+.|+.+|- + -.+-| + .+.|. ..|+..+- =|.
T Consensus 150 vDiviIRENTEGEYs~LEHE~V-pGVVEsLKVvT~~kseR--I-aryAF~yA~k~gRKkVTaVHKAnimKL~DG---lFl 222 (375)
T KOG0784|consen 150 VDIVIIRENTEGEYSGLEHESV-PGVVESLKVVTRFKSER--I-ARYAFEYAKKNGRKKVTAVHKANIMKLGDG---LFL 222 (375)
T ss_pred ccEEEEecCCcccccccccccC-cchhheeeeehhhhhHH--H-HHHHHHHHHHhCCceEEEEeccCceecchh---hHH
Confidence 5899999999999999987532 443432 266665542 1 11111 0 11121 11333332 245
Q ss_pred HHHHHHHHcCCCCEEEEECCCcccccchHHHH-HHHHHHHhhhccccccCCeEEeeE----eHHHHHHHHHhCCC
Q 011846 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKD-IFQQVYEERWRQKFEEHSIWYEHR----LIDDMVAYAIKSEG 340 (476)
Q Consensus 271 r~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~-i~~eva~~eYp~~f~~~~I~~e~~----lVDa~a~~LV~~P~ 340 (476)
+.|=|.|+.- -.++. |-| .-.+ +.|-|+ + |.|| ||.+-.. +|++.|.-|+--|+
T Consensus 223 e~~~eva~~Y-p~I~~----e~m-----iVDN~~MQlvs-~--P~qF---Dvmv~pnlYgniisNiaaGlvGG~G 281 (375)
T KOG0784|consen 223 ESCQEVAKKY-PDITF----EEM-----IVDNACMQLVS-R--PQQF---DVMVMPNLYGNIISNIAAGLVGGAG 281 (375)
T ss_pred HHHHHHHhcC-CCccH----HHh-----hHHHhHHHhhc-C--chhe---eeEechHHHHHHHHHHHHHhcCCCC
Confidence 5666666542 12221 111 1122 344455 2 7778 7766543 68888888876665
No 69
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=56.71 E-value=35 Score=38.70 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=70.5
Q ss_pred ccCCccccccccc-cCCCceEEEEecCCCCCCeeeeee-eecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEEC
Q 011846 212 AFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELDVY-NFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTK 289 (476)
Q Consensus 212 ~ted~Y~~~e~~~-~~~~~iDlvivREnteG~~Y~g~~-~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~K 289 (476)
..+|.|...--.. .....+.+.++..+++- .-.... ....++|.++.+++.+.-..|.+..++-|++.+--..+=-|
T Consensus 177 ~~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHlK 255 (741)
T TIGR00178 177 DNGDFYGSEKSATIDAAGSVKIELIAKDGSS-TVLKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHLK 255 (741)
T ss_pred CCCCCcCCceeEEecCCCeEEEEEEcCCCCE-EEecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeeeh
Confidence 3466665432221 23456777777765432 111100 01235677889999999999999999999887754444449
Q ss_pred CCcccccch----HHHHH-HHHHHHhhhccccccCCeEEeeEeHH
Q 011846 290 NTILKKYDG----RFKDI-FQQVYEERWRQKFEEHSIWYEHRLID 329 (476)
Q Consensus 290 aNVlk~tdg----lf~~i-~~eva~~eYp~~f~~~~I~~e~~lVD 329 (476)
++-||.+|- ..-++ |.++. ++|.+.|.+-||..+.-+-|
T Consensus 256 ATMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGlgd 299 (741)
T TIGR00178 256 ATMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGIGD 299 (741)
T ss_pred heeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcchHH
Confidence 999998884 22222 44555 35666666666665554444
No 70
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=49.13 E-value=28 Score=39.38 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=64.6
Q ss_pred ecccCCcccccccc-ccCCCceEEEEecCCCCCCeeeeee-eecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEE
Q 011846 210 RHAFGDQYRATDTV-IKGPGKLKMVFDPEDGTGPVELDVY-NFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (476)
Q Consensus 210 Re~ted~Y~~~e~~-~~~~~~iDlvivREnteG~~Y~g~~-~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v 287 (476)
-...+|.|...--. .+....+.+.++.++++- .-.... ....++|.++.+++.+.-..|.+..++-|++.+--..+=
T Consensus 171 ~M~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vLfSlH 249 (735)
T PF03971_consen 171 HMSGGDFYGNEKSVTVDKATTVRIEFVGKDGSV-TVLKEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVLFSLH 249 (735)
T ss_dssp --SSSSHHHH-EEEE-SSSEEEEEEEEETTS-E-EEEEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE-
T ss_pred ecCCCCCCCCceEEEecCCCeEEEEEEcCCCCE-EeccCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCeEEee
Confidence 33456666532221 123456777888776432 111111 112467779999999999999999999999877544444
Q ss_pred ECCCcccccchHH-H---HH-HHHHHHhhhccccccCCeEEeeE
Q 011846 288 TKNTILKKYDGRF-K---DI-FQQVYEERWRQKFEEHSIWYEHR 326 (476)
Q Consensus 288 ~KaNVlk~tdglf-~---~i-~~eva~~eYp~~f~~~~I~~e~~ 326 (476)
-|++-||.+|-.. - ++ |.+|. ++|.+.|.+-||..+.-
T Consensus 250 lKATMMKVSDPIiFGhaV~v~f~~vF-~k~~~~~~~~Gvn~nnG 292 (735)
T PF03971_consen 250 LKATMMKVSDPIIFGHAVKVFFKDVF-EKHGDTFKELGVNPNNG 292 (735)
T ss_dssp B-TTTSTTHHHHHHHHHHHHHCHHHH-HHCHHHHHHCT-SCCCH
T ss_pred ehhhhhhccCccHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccC
Confidence 4999999988532 2 22 44555 35666666666654433
No 71
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=47.75 E-value=1e+02 Score=29.53 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHHhcCCCceeEEEEe-c---chhhHhh---cC-CCCcH----HHHHHHHhcCeEEEecccCCCCccc
Q 011846 94 DEMTRIIWQMIKDKLIFPYLDLDIKYYD-L---GILNRDA---TD-DKVTV----ESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 94 DGIGpEI~~a~~~~l~~~~~~i~~~~~d-~---G~~~~~~---tg-~~lp~----etleaik~~daiLkGavgtP~~~~~ 161 (476)
+|-+..+.+++++-+.+.|.+++..... . +....+. .+ ..+++ +.++.++++|++++|. |..
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs---Pvy--- 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS---PVY--- 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC---Cee---
Confidence 8999999999998887778888776653 2 3322222 12 44554 4555599999999864 542
Q ss_pred cccccccCCCCcchhHhhhcCc
Q 011846 162 KEFGLKSMWRSPNGTIRNILNG 183 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~Ldl 183 (476)
+..+..+++.-+|-
T Consensus 87 --------~g~vsa~~K~fiDR 100 (207)
T COG0655 87 --------FGNVSAQMKAFIDR 100 (207)
T ss_pred --------cCCchHHHHHHHhh
Confidence 34566788888885
No 72
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=47.28 E-value=54 Score=33.86 Aligned_cols=112 Identities=24% Similarity=0.297 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEeHHHHHHHHHhCCCce
Q 011846 263 DESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY 342 (476)
Q Consensus 263 r~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~F 342 (476)
++.+-+.+..-+||++.++.++.+ -.||||+ . ++-| .+-+.+|
T Consensus 114 dp~~~k~i~~iley~~~~dvP~VI--------DaDGL~L------v-~q~~----------------------e~l~~~~ 156 (306)
T KOG3974|consen 114 DPAILKEIAKILEYLRGKDVPLVI--------DADGLWL------V-EQLP----------------------ERLIGGY 156 (306)
T ss_pred CHHHHHHHHHHHHHHhcCCCcEEE--------cCCceEe------h-hhch----------------------hhhhccC
Confidence 446777777788999998777765 3899995 1 1222 1123444
Q ss_pred --EEEecCC------ccchh---------hhhHhhhcCCcccc--cce-ecCCCCceeeeeccccccccccccccCCCC-
Q 011846 343 --VWACKNY------DGDVQ---------SDLLAQGFGSLGLM--TSV-LLSSDGKTLEAEAAHGTVTRHFRLHQKGQE- 401 (476)
Q Consensus 343 --ViVt~Nl------fGDIL---------SDlaA~l~GslGla--pSa-nig~~~a~~~fEp~HGSAPd~~~~~IaGk~- 401 (476)
||+|||. ++-++ +-|++++.+=.=+- ++- -+.++..+ .--+.-||--+ .-|||
T Consensus 157 ~~viLTPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev-~~~s~eGs~kR-----cGGQGD 230 (306)
T KOG3974|consen 157 PKVILTPNVVEFKRLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEV-RVCSTEGSLKR-----CGGQGD 230 (306)
T ss_pred ceeeeCCcHHHHHHHHHHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCee-EEccCCCCccc-----cCCCcc
Confidence 6677763 33322 23444442110000 111 12233221 12344677777 88998
Q ss_pred CccCcHhHHHHHHHHH
Q 011846 402 TSTNSIASIFAWTRGL 417 (476)
Q Consensus 402 ~iANPiA~IlS~amML 417 (476)
..+-.+|++++|+-.|
T Consensus 231 iLaGsla~fl~w~k~~ 246 (306)
T KOG3974|consen 231 ILAGSLATFLSWAKLL 246 (306)
T ss_pred hhhhHHHHHHHHHHhc
Confidence 5588899999999733
No 73
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=38.85 E-value=17 Score=39.39 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=17.2
Q ss_pred CceEeeeccc-CCccccccc
Q 011846 204 KPICIGRHAF-GDQYRATDT 222 (476)
Q Consensus 204 ~pivi~Re~t-ed~Y~~~e~ 222 (476)
.+++|+|||| ||+|+|.|.
T Consensus 141 iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 141 TDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred eEEEEecCCeeeEEEECCCC
Confidence 5789999999 999999875
No 74
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=37.89 E-value=58 Score=28.96 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=50.6
Q ss_pred cEEEEcCC----CcHHHHHHHHHHHHhcCCCceeEEEEecch---hhHhh------cCCCCcHHHHHHHHhcCeEEEecc
Q 011846 87 PIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI---LNRDA------TDDKVTVESAEATLKYNVAIKCAT 153 (476)
Q Consensus 87 ~I~vi~GD----GIGpEI~~a~~~~l~~~~~~i~~~~~d~G~---~~~~~------tg~~lp~etleaik~~daiLkGav 153 (476)
+|++|-|- |.+..+++++.+.+...++++ +.+++.. ...+. .-+.-.++..+.++++|+++++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~--~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEV--EVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEE--EEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEE--EEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 56666554 889999999988886665444 4455543 11111 11223456788899999999865
Q ss_pred cCCCCccccccccccCCCCcchhHhhhcCcE
Q 011846 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 154 gtP~~~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|.. +.++...+.+-||..
T Consensus 79 --P~y-----------~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVY-----------NGSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEB-----------TTBE-HHHHHHHHTH
T ss_pred --cEE-----------cCcCChhhhHHHHHh
Confidence 431 234556777777744
No 75
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=37.41 E-value=1.5e+02 Score=28.40 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=51.8
Q ss_pred cEEEEcC----CCcHHHHHHHHHHHHhcCCCceeEEEE-ecchhhHh--hcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 87 PIVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKYY-DLGILNRD--ATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 87 ~I~vi~G----DGIGpEI~~a~~~~l~~~~~~i~~~~~-d~G~~~~~--~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+|++|-| .+-...+.+.+.+.+.+.+.++++... ++..+... ..+.+--.+..+.++++|+++.+ +|..
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 4666666 366677777777777666766654321 22222111 12233344677888999999974 5653
Q ss_pred cccccccccCCCCcchhHhhhcCcE
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|.|....|.+-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 456668899999965
No 76
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=27.41 E-value=3.3e+02 Score=25.18 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=48.0
Q ss_pred EEEEcC----CCcHHHHHHHHHHHHhcCCCceeEEE-EecchhhHhhc--CCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 88 IVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRDAT--DDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 88 I~vi~G----DGIGpEI~~a~~~~l~~~~~~i~~~~-~d~G~~~~~~t--g~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
|++|-| ++-...+.+.+.+.+...+.+++... .++........ ..+--++..+.++++|+++++ +|..
T Consensus 2 il~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~---sP~Y-- 76 (171)
T TIGR03567 2 VLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVA---TPVY-- 76 (171)
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEE---CCcc--
Confidence 455544 36677777777776655555544332 23332222111 112234567788899999974 5652
Q ss_pred ccccccccCCCCcchhHhhhcCcE
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|.+.-..|.+-+|..
T Consensus 77 ---------~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 77 ---------KASYSGVLKALLDLL 91 (171)
T ss_pred ---------cCCCCHHHHHHHHhC
Confidence 345668888888854
No 77
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=24.36 E-value=65 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=24.7
Q ss_pred cEEEEcCC--CcHHHHHHHHHHHHhcCCCceeEEEEecchh
Q 011846 87 PIVEMDGD--EMTRIIWQMIKDKLIFPYLDLDIKYYDLGIL 125 (476)
Q Consensus 87 ~I~vi~GD--GIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~ 125 (476)
+|+||+|. |||..+++.+++.+.. +++-+-+|-.
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~~~-----~~eI~AlGTN 36 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKELPE-----EVEIIALGTN 36 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhCCC-----CcEEEEEehh
Confidence 58999988 8999999988876531 3444556643
No 78
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=24.04 E-value=61 Score=34.15 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=17.6
Q ss_pred ecccEEEEcCC--CcHHHHHHHHH
Q 011846 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (476)
Q Consensus 84 ~~~~I~vi~GD--GIGpEI~~a~~ 105 (476)
|.++|++--|| ||||||+-.+.
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 45679999999 99999975443
No 79
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=23.81 E-value=41 Score=37.21 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCCCCceEeeecccCC-------ccccccccccCCCceEEEEecCCCCCCeeeeeeee-cCCceEEEEEecHHHHH
Q 011846 199 VPGWKKPICIGRHAFGD-------QYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMYNVDESIR 267 (476)
Q Consensus 199 ~pg~~~pivi~Re~ted-------~Y~~~e~~~~~~~~iDlvivREnteG~~Y~g~~~~-~~~~va~~~~~Tr~~~e 267 (476)
.+.|++|.+-.|...++ +|+++....++ =..+++|.|+++|+ .|-+..-. .++|.. ..++|++..|
T Consensus 159 k~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg-~~~pI~i~Rha~gd-~Y~~iD~vi~~~g~~-~~~~~rEnte 232 (483)
T PLN03065 159 KSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPG-WKKPICIGRHAFGD-QYRATDTVIKGPGKL-KMVFVPEDGN 232 (483)
T ss_pred ccccCCccHHHHHHcCCeEEeeeeeccccCccCCC-CCCCeEEeecccCC-CcCceEEEEecCCee-EEEeecCCCC
Confidence 35678887777777665 34443322221 15789999999999 88776543 234433 3567777665
No 80
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=22.87 E-value=41 Score=36.47 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=13.5
Q ss_pred CCceEeeecccCCcc
Q 011846 203 KKPICIGRHAFGDQY 217 (476)
Q Consensus 203 ~~pivi~Re~ted~Y 217 (476)
..++||+||||||.|
T Consensus 153 ~id~vivRENTEg~y 167 (410)
T PLN00103 153 KLKLVFVPEGKDEKT 167 (410)
T ss_pred ceEEEEEecCCCcee
Confidence 367999999999999
No 81
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=22.79 E-value=4.6e+02 Score=24.17 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred cEEEEcC----CCcHHHHHHHHHHHHh-cCCCceeEEEEecchh--hHhh--cCCCCcH---HHHHHHHhcCeEEEeccc
Q 011846 87 PIVEMDG----DEMTRIIWQMIKDKLI-FPYLDLDIKYYDLGIL--NRDA--TDDKVTV---ESAEATLKYNVAIKCATI 154 (476)
Q Consensus 87 ~I~vi~G----DGIGpEI~~a~~~~l~-~~~~~i~~~~~d~G~~--~~~~--tg~~lp~---etleaik~~daiLkGavg 154 (476)
+|++|-| ++....+.+.+.+.+. ..+.+++ .+|+..- .+.. .....|+ +..+.++++|+++. +
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi---~ 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVV---G 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEE---E
Confidence 3555555 3666777777776654 3354444 3444221 1111 1122454 67788899999997 4
Q ss_pred CCCCccccccccccCCCCcchhHhhhcCcE
Q 011846 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 155 tP~~~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
||.. +.+....|.+-||..
T Consensus 76 tP~Y-----------~~s~~~~LKn~lD~~ 94 (174)
T TIGR03566 76 SPVY-----------RGSYTGLFKHLFDLV 94 (174)
T ss_pred CCcC-----------cCcCcHHHHHHHHhc
Confidence 5753 345668899999953
No 82
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=20.77 E-value=82 Score=33.26 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=17.4
Q ss_pred ecccEEEEcCC--CcHHHHHHHHH
Q 011846 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (476)
Q Consensus 84 ~~~~I~vi~GD--GIGpEI~~a~~ 105 (476)
|+.+|++--|| ||||||+-.+.
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34578999999 99999976553
Done!