Query 011846
Match_columns 476
No_of_seqs 171 out of 1432
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 3E-115 1E-119 910.4 29.9 394 79-474 24-419 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 2E-113 6E-118 895.5 29.7 393 80-474 3-404 (413)
3 2uxq_A Isocitrate dehydrogenas 100.0 2E-113 7E-118 892.3 27.8 390 81-474 2-395 (402)
4 4aoy_A Isocitrate dehydrogenas 100.0 1E-112 4E-117 885.3 29.2 393 80-474 2-396 (402)
5 2qfy_A Isocitrate dehydrogenas 100.0 7E-112 2E-116 886.3 26.0 385 79-474 16-417 (427)
6 1zor_A Isocitrate dehydrogenas 100.0 4E-110 1E-114 866.8 32.3 380 80-474 2-393 (399)
7 1x0l_A Homoisocitrate dehydrog 100.0 6E-104 2E-108 802.4 31.0 324 86-474 2-328 (333)
8 3flk_A Tartrate dehydrogenase/ 100.0 2E-103 8E-108 806.6 28.6 342 84-474 4-358 (364)
9 3vmk_A 3-isopropylmalate dehyd 100.0 3E-103 1E-107 807.6 26.8 341 85-474 13-369 (375)
10 3dms_A Isocitrate dehydrogenas 100.0 5E-103 2E-107 818.0 28.2 341 85-474 36-424 (427)
11 1wpw_A 3-isopropylmalate dehyd 100.0 1E-102 4E-107 794.2 28.9 325 86-474 2-333 (336)
12 3u1h_A 3-isopropylmalate dehyd 100.0 2E-102 8E-107 802.8 30.0 343 82-474 20-374 (390)
13 2y3z_A 3-isopropylmalate dehyd 100.0 7E-103 2E-107 801.4 24.8 335 86-474 4-345 (359)
14 3udu_A 3-isopropylmalate dehyd 100.0 1E-102 5E-107 799.1 26.9 336 86-474 7-353 (361)
15 2e0c_A 409AA long hypothetical 100.0 6E-102 2E-106 806.8 29.6 345 80-474 17-404 (409)
16 1hqs_A Isocitrate dehydrogenas 100.0 9E-102 3E-106 807.9 29.9 348 80-474 12-420 (423)
17 3ty4_A Probable homoisocitrate 100.0 1E-101 5E-106 792.7 30.6 325 85-474 10-362 (366)
18 3blx_B Isocitrate dehydrogenas 100.0 2E-102 8E-107 795.9 24.6 325 84-474 20-352 (354)
19 1cnz_A IPMDH, IMDH, protein (3 100.0 9E-102 3E-106 794.9 26.8 340 86-474 5-357 (363)
20 2iv0_A Isocitrate dehydrogenas 100.0 1E-101 4E-106 804.4 27.6 345 80-474 20-407 (412)
21 2d4v_A Isocitrate dehydrogenas 100.0 5E-101 2E-105 803.2 31.1 346 80-474 19-427 (429)
22 2d1c_A Isocitrate dehydrogenas 100.0 5E-101 2E-105 810.6 31.0 336 79-474 9-353 (496)
23 3blx_A Isocitrate dehydrogenas 100.0 8E-102 3E-106 791.1 24.3 327 81-474 13-344 (349)
24 1tyo_A Isocitrate dehydrogenas 100.0 3E-101 1E-105 806.0 29.3 344 81-474 29-419 (435)
25 1vlc_A 3-isopropylmalate dehyd 100.0 9E-102 3E-106 794.2 24.7 340 86-474 13-360 (366)
26 3r8w_A 3-isopropylmalate dehyd 100.0 1E-101 4E-106 800.9 25.0 342 83-474 40-395 (405)
27 1a05_A IPMDH, IMDH, 3-isopropy 100.0 3E-101 9E-106 790.3 26.6 340 86-474 2-352 (358)
28 1w0d_A 3-isopropylmalate dehyd 100.0 5E-100 2E-104 775.6 28.2 327 86-474 2-335 (337)
29 2b0t_A NADP isocitrate dehydro 97.4 0.011 3.8E-07 63.6 20.4 193 252-455 448-649 (738)
30 1itw_A Isocitrate dehydrogenas 97.4 0.011 3.8E-07 63.6 20.2 193 252-455 452-653 (741)
31 4aoy_A Isocitrate dehydrogenas 92.1 0.095 3.3E-06 54.5 4.0 23 229-252 125-147 (402)
32 1wpw_A 3-isopropylmalate dehyd 91.9 0.049 1.7E-06 55.4 1.7 118 204-341 110-239 (336)
33 1w0d_A 3-isopropylmalate dehyd 90.6 0.11 3.8E-06 52.9 2.7 119 204-340 116-250 (337)
34 3blx_A Isocitrate dehydrogenas 89.9 0.2 6.9E-06 51.2 3.9 121 204-342 123-257 (349)
35 1hqs_A Isocitrate dehydrogenas 89.8 0.13 4.6E-06 53.8 2.6 21 203-223 137-157 (423)
36 3blx_B Isocitrate dehydrogenas 89.5 0.18 6.2E-06 51.6 3.2 119 204-340 129-263 (354)
37 2d4v_A Isocitrate dehydrogenas 89.2 0.16 5.4E-06 53.3 2.6 21 203-223 146-166 (429)
38 2iv0_A Isocitrate dehydrogenas 89.1 0.17 5.9E-06 52.8 2.7 21 203-223 142-162 (412)
39 2e0c_A 409AA long hypothetical 89.1 0.17 5.7E-06 52.9 2.6 21 203-223 142-162 (409)
40 4aty_A Terephthalate 1,2-CIS-d 88.2 0.27 9.3E-06 50.0 3.4 133 260-418 196-340 (349)
41 1yxo_A 4-hydroxythreonine-4-ph 87.9 0.31 1.1E-05 49.4 3.6 138 260-418 174-322 (328)
42 1tyo_A Isocitrate dehydrogenas 87.7 0.22 7.6E-06 52.3 2.5 22 202-223 151-172 (435)
43 3lxy_A 4-hydroxythreonine-4-ph 87.7 0.31 1E-05 49.6 3.5 133 260-419 179-328 (334)
44 3dms_A Isocitrate dehydrogenas 87.6 0.25 8.6E-06 51.8 2.8 22 203-224 156-177 (427)
45 1vlc_A 3-isopropylmalate dehyd 87.5 0.22 7.4E-06 51.3 2.2 22 203-224 139-160 (366)
46 3us8_A Isocitrate dehydrogenas 87.3 0.2 6.7E-06 52.6 1.8 22 229-251 148-169 (427)
47 2hi1_A 4-hydroxythreonine-4-ph 86.6 0.56 1.9E-05 47.6 4.6 141 260-418 181-328 (330)
48 3flk_A Tartrate dehydrogenase/ 86.5 0.31 1.1E-05 50.1 2.7 122 203-342 127-265 (364)
49 1x0l_A Homoisocitrate dehydrog 84.7 0.41 1.4E-05 48.6 2.6 121 203-342 110-243 (333)
50 3ty4_A Probable homoisocitrate 83.9 0.51 1.8E-05 48.5 2.9 21 204-224 124-144 (366)
51 3r8w_A 3-isopropylmalate dehyd 81.6 0.5 1.7E-05 49.2 1.8 121 203-341 167-303 (405)
52 1a05_A IPMDH, IMDH, 3-isopropy 81.5 0.51 1.7E-05 48.4 1.8 18 204-221 127-144 (358)
53 3vmk_A 3-isopropylmalate dehyd 81.3 0.57 1.9E-05 48.3 2.1 120 203-340 140-274 (375)
54 3tsn_A 4-hydroxythreonine-4-ph 81.3 1.1 3.9E-05 46.0 4.3 65 340-418 294-362 (367)
55 3u1h_A 3-isopropylmalate dehyd 80.1 0.96 3.3E-05 46.9 3.3 121 204-342 149-283 (390)
56 2d1c_A Isocitrate dehydrogenas 79.1 1.2 4.3E-05 47.4 3.8 117 203-337 130-259 (496)
57 1cnz_A IPMDH, IMDH, protein (3 78.8 0.66 2.3E-05 47.6 1.6 120 203-340 131-265 (363)
58 2uxq_A Isocitrate dehydrogenas 78.5 0.62 2.1E-05 48.4 1.3 22 228-250 123-144 (402)
59 2y3z_A 3-isopropylmalate dehyd 78.3 0.74 2.5E-05 47.2 1.8 20 203-222 128-147 (359)
60 3udu_A 3-isopropylmalate dehyd 76.0 0.86 2.9E-05 46.8 1.5 119 203-341 133-263 (361)
61 1lwd_A Isocitrate dehydrogenas 62.9 2.6 8.9E-05 43.9 1.7 22 228-250 125-146 (413)
62 1itw_A Isocitrate dehydrogenas 60.1 11 0.00037 41.0 5.8 117 210-329 175-299 (741)
63 2b0t_A NADP isocitrate dehydro 59.9 17 0.00057 39.6 7.2 117 210-329 173-297 (738)
64 2qfy_A Isocitrate dehydrogenas 51.3 4.1 0.00014 42.6 0.8 15 204-218 157-171 (427)
65 1zor_A Isocitrate dehydrogenas 51.2 4.5 0.00016 41.9 1.2 21 228-249 124-144 (399)
66 3u7r_A NADPH-dependent FMN red 34.3 94 0.0032 28.3 7.2 83 84-184 1-93 (190)
67 3k1y_A Oxidoreductase; structu 30.0 1.8E+02 0.0062 26.3 8.3 85 86-184 12-111 (191)
68 1yxo_A 4-hydroxythreonine-4-ph 24.0 43 0.0015 33.8 3.0 20 84-103 1-22 (328)
69 2q62_A ARSH; alpha/beta, flavo 22.2 1.9E+02 0.0066 27.3 7.2 83 86-184 35-124 (247)
70 2hi1_A 4-hydroxythreonine-4-ph 21.4 55 0.0019 33.1 3.2 18 87-104 8-27 (330)
71 1sqs_A Conserved hypothetical 20.8 2.5E+02 0.0086 25.7 7.6 82 87-184 3-105 (242)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.8e-115 Score=910.45 Aligned_cols=394 Identities=66% Similarity=1.122 Sum_probs=362.2
Q ss_pred ccceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 79 ~~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
.+||+|.+||++|||||||||||++++++|.+++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+
T Consensus 24 ~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~ 103 (427)
T 3us8_A 24 MAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDE 103 (427)
T ss_dssp -CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
+++++|+++++|+|+|++|||+||||+|+|||+|+++|+++++|+.||||+||||||+|+|+|+...+++..++.++.++
T Consensus 104 ~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~ 183 (427)
T 3us8_A 104 GRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGED 183 (427)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred cccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeeccc
Confidence 66677778889999999999999999999998889999998889999999999999999999887665666677777665
Q ss_pred CCCCeeeeeeeecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc
Q 011846 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (476)
Q Consensus 239 teG~~Y~g~~~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~ 318 (476)
+++ .-.....+.++++++++++|+++++||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++||++|++
T Consensus 184 G~~-~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~ 262 (427)
T 3us8_A 184 GQT-IEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKA 262 (427)
T ss_dssp SCE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccc-ccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCC
Confidence 432 2222333445678888999999999999999999999999999999999999999999999999996599999999
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 319 ~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia 398 (476)
++|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+.||||+||||||||+++||
T Consensus 263 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~iA 342 (427)
T 3us8_A 263 EKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQK 342 (427)
T ss_dssp TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHHHT
T ss_pred CCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchhcC
Confidence 99999999999999999999999999999999999999999999999999999999987446999999999999999999
Q ss_pred CCCCc-cCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCccc-CCCCccCchhhhhcccc
Q 011846 399 GQETS-TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV-HGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~i-ANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~-~~~~~~~~~~~~~~~i~ 474 (476)
||| + |||+|+||||+|||+|+|++++|+++.++|++|++||.+++++|++|+||||.. .+.+.+.|++|+++||.
T Consensus 343 Gk~-i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~~~~~~~~T~e~~daV~~ 419 (427)
T 3us8_A 343 GEE-TSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLIGPDQPWLSTTGFLDKIDE 419 (427)
T ss_dssp TCC-CCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHCTTCCCBCHHHHHHHHHH
T ss_pred CCC-ceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCcccccccccCCcccCHHHHHHHHHH
Confidence 999 7 999999999999999999988889999999999999999999999999999864 34567899999999974
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1.7e-113 Score=895.51 Aligned_cols=393 Identities=66% Similarity=1.127 Sum_probs=355.9
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+||+|++||++|||||||||||++++++|+.++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.++
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 59999999999999999999999999999988999999999999999999999999999999999999999999999855
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
+++++.++++|+|+|++|||+||||+|+|||.|+++|+++|+|+.||+|+||||||+|.++|+...+++..+++++++++
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 55555556789999999999999999999986789999889999999999999999999998887666677888888776
Q ss_pred CCCeeeeeee--ecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccc
Q 011846 240 TGPVELDVYN--FKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (476)
Q Consensus 240 eG~~Y~g~~~--~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~ 317 (476)
++ |.+... +..+++++++++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|+
T Consensus 163 ~~--~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~ 240 (413)
T 1lwd_A 163 SS--AKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240 (413)
T ss_dssp CC--CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cc--cccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCccc
Confidence 54 233222 22345668899999999999999999999999999999999999999999999999999559998888
Q ss_pred cCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccccc
Q 011846 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (476)
Q Consensus 318 ~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~I 397 (476)
+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+.||||+|||||||++++|
T Consensus 241 ~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~ 320 (413)
T 1lwd_A 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ 320 (413)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred CCeEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhh
Confidence 88899999999999999999999999999999999999999999999999999999998854699999999999999999
Q ss_pred CCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCC------C-CccCchhhhh
Q 011846 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHG------P-KYILPSPYLL 470 (476)
Q Consensus 398 aGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~------~-~~~~~~~~~~ 470 (476)
||||++|||+|+||||+|||+|||+.+.|+++.++|++|++||.+++++|.+|+|||+...| . +.+.|++|++
T Consensus 321 aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~d 400 (413)
T 1lwd_A 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred cCCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHH
Confidence 99993399999999999999999999888999999999999999999999999999842222 1 3578999999
Q ss_pred cccc
Q 011846 471 HVIT 474 (476)
Q Consensus 471 ~~i~ 474 (476)
+||.
T Consensus 401 aV~~ 404 (413)
T 1lwd_A 401 TIKS 404 (413)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 3
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=2e-113 Score=892.34 Aligned_cols=390 Identities=46% Similarity=0.809 Sum_probs=356.6
Q ss_pred ceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 81 ~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
||+|.+||++|||||||||||++++++|++++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.+++
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998555
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
+++++++++|+|+|++|||+||||+|+|||.++++|+++|+|+.||||+||||||+|+|+|+...+++++++++.+ ++
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~--~~ 159 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTD--KN 159 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEEC--TT
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeec--cC
Confidence 6665566789999999999999999999986678888888889999999999999999999987777788866665 44
Q ss_pred CCeeeeeeee--cCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc
Q 011846 241 GPVELDVYNF--KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (476)
Q Consensus 241 G~~Y~g~~~~--~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~ 318 (476)
| .|.+.+.+ ..+++++++++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+++||++|++
T Consensus 160 g-~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~ 238 (402)
T 2uxq_A 160 G-KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAA 238 (402)
T ss_dssp S-CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred C-ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccC
Confidence 6 66655433 34566688899999999999999999999998999999999999999999999999995699988887
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 319 ~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia 398 (476)
.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++. .||||+|||||||++++||
T Consensus 239 ~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~lfEpvHGSAPdi~~~~~a 317 (402)
T 2uxq_A 239 AGIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGY-FEYEAAHGTVQRHYYQHLK 317 (402)
T ss_dssp HTCCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSC-EEEECCSCCCHHHHHHHHT
T ss_pred CeEEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCCC-eEEeCCCCChhhhhhhhhc
Confidence 889999999999999999999999999999999999999999999999999999999883 5999999999999999999
Q ss_pred CCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCC--CccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP--KYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~--~~~~~~~~~~~~i~ 474 (476)
|||++|||+|+|||++|||+|||+.+.|+++.++|++|++||.+++++|++|+||||+..+. +...|++|+++||.
T Consensus 318 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~~g~~~~~~~T~e~~daI~~ 395 (402)
T 2uxq_A 318 GERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPAAIKVLDSIEFIDELGK 395 (402)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSCCSEECCHHHHHHHHHH
T ss_pred CCCcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCCCCCCcCHHHHHHHHHH
Confidence 99933999999999999999999998889999999999999999999999999999865553 34589999999874
No 4
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.1e-112 Score=885.32 Aligned_cols=393 Identities=53% Similarity=0.915 Sum_probs=340.1
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+||+|++||++|||||||||+|+.+++++++++++|+|+++|+|.+++++||+++|++++++|+++||+||||++||.++
T Consensus 2 ~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~ 81 (402)
T 4aoy_A 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQ 81 (402)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
++++++++++|+|+|++|||+||||+|+|||+++++|..+++|..||||+||||||+|+|+|+...+++.+.+.++.+++
T Consensus 82 ~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 82 RVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred ccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 67777888899999999999999999999997788888888888999999999999999999988777888888887653
Q ss_pred CCCeeeeeeeecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccC
Q 011846 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (476)
Q Consensus 240 eG~~Y~g~~~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~ 319 (476)
+. .-..+..+..+++++++++|+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++||++|+++
T Consensus 162 ~~-~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EV-SRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cc-cccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 21 11223334456777999999999999999999999999999999999999999999999999999966999999999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCC
Q 011846 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (476)
Q Consensus 320 ~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaG 399 (476)
+|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++. .+|||+|||||||++++|||
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~-~~fEp~HGSApd~~~~~iaG 319 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK-YEFEAAHGTVTRHYYKHLKG 319 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCC-EEEEC---------------
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCCc-eEEeeccCCccccchhhccC
Confidence 99999999999999999999999999999999999999999999999999999998873 69999999999999999999
Q ss_pred CCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCccc--CCCCccCchhhhhcccc
Q 011846 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILV--HGPKYILPSPYLLHVIT 474 (476)
Q Consensus 400 k~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~--~~~~~~~~~~~~~~~i~ 474 (476)
||++|||+|+||||+|||+|+|++++|+++.++|++|++||.+++++|++|+||||++ .+.+.+.|++|+++||.
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g~~T~Dlgg~~~~~~~~~~~T~ef~~av~~ 396 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVMTKDLASLSEVPEKKIVNTEDFLKEIRK 396 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTEEEHHHHTTCCCSCCEEECHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcCCCCcccccccccCCCCCcCHHHHHHHHHH
Confidence 9933999999999999999999998889999999999999999999999999999987 45678999999999974
No 5
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=6.8e-112 Score=886.27 Aligned_cols=385 Identities=62% Similarity=0.987 Sum_probs=351.7
Q ss_pred ccceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 79 ~~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
.+||+|.++|++|||||||||||++++++++.++++|+|+++++|.+++++||+++|++++++|+++||+||||++||..
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 35999999999999999999999999999988899999999999999999999999999999999999999999999985
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
.++++++++++|+|+|++|||+||||+|+||+.|+++|+++|||++||+|+||+++|+| +++|++|+|||
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y----------~~~D~vivREn 165 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQY----------KATDTLIPGPG 165 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGG----------GCEEEEECSSE
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCcc----------CCeeEEEeccC
Confidence 44445566778999999999999999999999788899999999999999999999999 47999999999
Q ss_pred CCCCeee------eee---ee----cCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHH
Q 011846 239 GTGPVEL------DVY---NF----KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQ 305 (476)
Q Consensus 239 teG~~Y~------g~~---~~----~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~ 305 (476)
||| +|+ |.+ +. .+.+++..+++|+++++||+|+||+||++|++|||+|||+||||.|||||+++|+
T Consensus 166 teg-~Y~~~e~teG~~~~~~~~~~~~~~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~ 244 (427)
T 2qfy_A 166 SLE-LVYKPSDPTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQ 244 (427)
T ss_dssp EEE-EEEEESCTTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHH
T ss_pred ccc-eeeeccccCCccccccccccCCCceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHH
Confidence 999 998 421 11 1345666589999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecc
Q 011846 306 QVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA 385 (476)
Q Consensus 306 eva~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~ 385 (476)
|||+++||++|++.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++++++|||+
T Consensus 245 eva~~eYpd~~~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpv 324 (427)
T 2qfy_A 245 EVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAA 324 (427)
T ss_dssp HHHHHHTHHHHHHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECC
T ss_pred HHHHHhCCCcccCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCC
Confidence 99956999888877899999999999999999999999999999999999999999999999999999998855799999
Q ss_pred ccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH-cCCCCcccCcccCC---CC
Q 011846 386 HGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVE-TGKMTKDLAILVHG---PK 461 (476)
Q Consensus 386 HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~-~G~~T~DLgG~~~~---~~ 461 (476)
|||||||+++.|||||++|||+|+|||++|||+|||+.++|+++.++|++||+||.++++ +|.+|+||||...+ .+
T Consensus 325 HGSAPdi~~~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G~~T~Dlgg~~g~~~~~~ 404 (427)
T 2qfy_A 325 HGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSA 404 (427)
T ss_dssp SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTTCCSGGG
T ss_pred CCCcccccchhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCCCccccccccCCccccCC
Confidence 999999888889999933999999999999999999998899999999999999999999 99999999874311 13
Q ss_pred ccCchhhhhcccc
Q 011846 462 YILPSPYLLHVIT 474 (476)
Q Consensus 462 ~~~~~~~~~~~i~ 474 (476)
...|++|+++||.
T Consensus 405 ~~~T~e~~daV~~ 417 (427)
T 2qfy_A 405 YVTTEEFLDAVEK 417 (427)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5689999999974
No 6
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-110 Score=866.78 Aligned_cols=380 Identities=50% Similarity=0.866 Sum_probs=340.5
Q ss_pred cceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCc
Q 011846 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (476)
Q Consensus 80 ~~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~ 159 (476)
+||+|.+||++|||||||||||++++++|++++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.++
T Consensus 2 ~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~ 81 (399)
T 1zor_A 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAE 81 (399)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
+++++.++++|+|+|++|||+||||+|+||+.|+++|+++|+|+.||+|+||||||+|.+ +|++++|||+
T Consensus 82 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g----------~d~~~~~e~t 151 (399)
T 1zor_A 82 RVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNA----------VEAKVEGPAE 151 (399)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGC----------EEEEECSSEE
T ss_pred cCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCC----------ceeEecCCCc
Confidence 455554556899999999999999999999977888888888999999999999999964 5666666666
Q ss_pred CCCeee---eeeee----cCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHh--
Q 011846 240 TGPVEL---DVYNF----KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE-- 310 (476)
Q Consensus 240 eG~~Y~---g~~~~----~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~-- 310 (476)
+...|. +.++. ..+++++++++|+++++||+|+||+||++|++|||+|||+||||.|||+|+++|+|||++
T Consensus 152 ~~~~y~~e~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~ 231 (399)
T 1zor_A 152 VELVVRNKENKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRK 231 (399)
T ss_dssp EEEEEESSSCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTH
T ss_pred ceeeEeccccccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhc
Confidence 221443 22222 234566888999999999999999999999889999999999999999999999999952
Q ss_pred -hhccccccCCeEEeeEeHHHHHHHHHhCCCceEEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccc
Q 011846 311 -RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (476)
Q Consensus 311 -eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~FViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSA 389 (476)
+|| ..+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++. .||||+||||
T Consensus 232 ~~yp----~~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~-~~fEpvHGSA 306 (399)
T 1zor_A 232 EELE----KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGV-YEFEAAHGTV 306 (399)
T ss_dssp HHHH----HTTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCC-EEEEESSCCC
T ss_pred ccCC----CCcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCCC-eEEeCCCCcc
Confidence 788 1249999999999999999999999999999999999999999999999999999999884 5999999999
Q ss_pred ccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCC--CccCchh
Q 011846 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGP--KYILPSP 467 (476)
Q Consensus 390 Pd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~--~~~~~~~ 467 (476)
|||++++|||||++|||+|+|||++|||+|||+.+.|+++.++|++|++||.+++++|.+|+||||...+. +...|++
T Consensus 307 Pdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~~g~~~~~~~T~e 386 (399)
T 1zor_A 307 RRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPPIDKYVTLEE 386 (399)
T ss_dssp HHHHHHHTTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSCCCCCCCHHH
T ss_pred cccchhhhcCCCCccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcCCcCccccccCCCCCCCCCCHHH
Confidence 99999999999933999999999999999999988888899999999999999999999999999865542 2458999
Q ss_pred hhhcccc
Q 011846 468 YLLHVIT 474 (476)
Q Consensus 468 ~~~~~i~ 474 (476)
|+++||.
T Consensus 387 ~~daV~~ 393 (399)
T 1zor_A 387 FIDEVKK 393 (399)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=6.5e-104 Score=802.40 Aligned_cols=324 Identities=19% Similarity=0.196 Sum_probs=301.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
++|++||||||||||+++++++|.+.+++++|+++++|.++++++|+++|++++++|+++|++||||+++|.. +.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~---~~-- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTR---KV-- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSS---CC--
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCC---CC--
Confidence 5799999999999999999999988899999999999999999999999999999999999999999999963 22
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
.+|+|+|++|||+||||+|+||+ +++| + ++|+ +++|+||||||||| +|+
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~----~s~~---------------------~~vD~vivREnteg-~Y~ 125 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-V----PGSR---------------------PGVDLVIVRENTEG-LYV 125 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-S----TTCC---------------------SSCEEEEEEECGGG-TCC
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-C----CCCC---------------------CCCCEEEEecCccc-eec
Confidence 36789999999999999999997 7776 3 3552 37899999999999 999
Q ss_pred eeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEE
Q 011846 246 DVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (476)
Q Consensus 246 g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~ 323 (476)
|.++. .++++ ++++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||| ++|| +|++
T Consensus 126 g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~eyp------~I~~ 197 (333)
T 1x0l_A 126 EQERR-YLDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDFP------LVNV 197 (333)
T ss_dssp CCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTCT------TSEE
T ss_pred ccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHCC------CceE
Confidence 98765 45788 679999999999999999999999 6789999999999999999999999999 6999 9999
Q ss_pred eeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCC
Q 011846 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQET 402 (476)
Q Consensus 324 e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~ 402 (476)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+|||||| |||||
T Consensus 198 ~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~a--~fEp~HGSAPd-----iaGk~- 269 (333)
T 1x0l_A 198 QDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTTA--VFEPVHGSAPD-----IAGKG- 269 (333)
T ss_dssp EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSCE--EEEESSCCCGG-----GTTSS-
T ss_pred EEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCce--EEeCCCCChhh-----hcCCC-
Confidence 9999999999999999999 999999999999999999999999999999999885 89999999999 99999
Q ss_pred ccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 403 STNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 403 iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
+|||+|+|||++|||+|+| +.++|++||+||.+++++|.+|+||||.+ .|++|+++||.
T Consensus 270 iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~DlgG~~------~T~e~~daV~~ 328 (333)
T 1x0l_A 270 IANPTAAILSAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLGGDA------TTEAFTEAVVE 328 (333)
T ss_dssp CCCCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHSCCCGGGTCCC------CHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHcCCccCccCCCC------CHHHHHHHHHH
Confidence 9999999999999999999 45699999999999999999999999843 58999999874
No 8
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=2.3e-103 Score=806.56 Aligned_cols=342 Identities=17% Similarity=0.140 Sum_probs=306.3
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecch-hhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGI-LNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~-~~~~~tg~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
|.++|++||||||||||+++++++|.+. +++|+|+++++|. +++++||+++|++++++|+++|++||||+++|..
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 4578999999999999999999888542 7999999999999 9999999999999999999999999999999973
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
+++ ...++|+|++|||+||||||+||+ |++ |++++|+ + ...++++|+||||||
T Consensus 84 --~~~---~~~~~s~~l~LR~~ldlyanvRP~--~~~----pg~~spl-----------k-----~~~~~~vD~vivREn 136 (364)
T 3flk_A 84 --VPD---HISLWGSLLKFRREFDQYVNIRPV--RLF----PGVPCAL-----------A-----NRKVGDIDFVVVREN 136 (364)
T ss_dssp --BCH---HHHHHTTHHHHHHHTTCCEEEEEE--ECC----TTCCCSB-----------T-----TCCTTSSEEEEEEEC
T ss_pred --CCC---CcCcccchHHHHHHhCCeEEEEEE--ecc----CCccccc-----------c-----cccCCCCCEEEEeeC
Confidence 111 011368899999999999999997 655 5666772 1 112368999999999
Q ss_pred CCCCeeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCC-CEEEEECCCcccccchHHHHHHHHHHHhhh
Q 011846 239 GTGPVELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKW-PLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (476)
Q Consensus 239 teG~~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~k-kVt~v~KaNVlk~tdglf~~i~~eva~~eY 312 (476)
||| +|+|.++.. +++++ ++++||++++|||+|+||+||++|++ |||+|||+||||.+||||+++|+||| ++|
T Consensus 137 teG-~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva-~ey 214 (364)
T 3flk_A 137 TEG-EYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA-AHY 214 (364)
T ss_dssp SSB-TCCCCEEEESTTSTTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH-TTC
T ss_pred CCc-eecCcCceeccCCCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH-HHC
Confidence 999 999988753 35788 67999999999999999999999965 79999999999999999999999999 699
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCc-eeeeeccccccc
Q 011846 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVT 390 (476)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a-~~~fEp~HGSAP 390 (476)
| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. +.||||+|||||
T Consensus 215 p------dv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGSAP 288 (364)
T 3flk_A 215 P------HVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAP 288 (364)
T ss_dssp T------TCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCT
T ss_pred C------CceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCCch
Confidence 9 99999999999999999999999 999999999999999999999999999999998862 359999999999
Q ss_pred cccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhh
Q 011846 391 RHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLL 470 (476)
Q Consensus 391 d~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~ 470 (476)
| ||||| +|||+|+|||++|||+|+|++| +.+.++|++|++||.+++++|++|+||||.+ .|++|++
T Consensus 289 d-----iAGk~-iANP~A~IlS~ammL~~lg~~~--~~~~~~A~~Ie~Av~~~l~~G~~T~Dlgg~~------~T~e~~~ 354 (364)
T 3flk_A 289 D-----IFGKN-IANPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMGGTL------STQQVGA 354 (364)
T ss_dssp T-----TTTSS-CCCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGTCCC------CHHHHHH
T ss_pred h-----hcCCC-ccCcHHHHHHHHHHHHHhCccc--chhHHHHHHHHHHHHHHHHcCCCCcccCCCc------CHHHHHH
Confidence 9 99999 9999999999999999999776 6688999999999999999999999999854 4799999
Q ss_pred cccc
Q 011846 471 HVIT 474 (476)
Q Consensus 471 ~~i~ 474 (476)
+||.
T Consensus 355 aV~~ 358 (364)
T 3flk_A 355 AISD 358 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=2.8e-103 Score=807.62 Aligned_cols=341 Identities=19% Similarity=0.193 Sum_probs=303.9
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
+++|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|....
T Consensus 13 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~~ 92 (375)
T 3vmk_A 13 SYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWEH 92 (375)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred cceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCccC
Confidence 478999999999999999999888543 7999999999999999999999999999999999999999999997322
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCC--CceEeeecccCCccccccccccC---CCceEEEEe
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK--KPICIGRHAFGDQYRATDTVIKG---PGKLKMVFD 235 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~--~pivi~Re~ted~Y~~~e~~~~~---~~~iDlviv 235 (476)
++ +..++|+++|++|||+||||||+||| |++| +++ +|+ +. ++++|+|||
T Consensus 93 ~~--~~~~~~~~~~l~LRk~ldLyaNvRP~--~~~p----g~~~~spl------------------k~~~~~~~vD~vIv 146 (375)
T 3vmk_A 93 LP--PNDQPERGALLPLRGHFELFCNMRPA--KLHP----GLEHMSPL------------------RSDISEKGFDILCV 146 (375)
T ss_dssp SC--STTSHHHHHHHHHHHHTTCCEEEEEE--ECCT----TCGGGSSB------------------CHHHHTTCCEEEEE
T ss_pred CC--ccccccccchHHHHHHcCCeEEEEEE--eccC----CCcccCCC------------------CcccccCCCCEEEE
Confidence 22 23456677789999999999999997 6654 543 563 11 368999999
Q ss_pred cCCCCCCeeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHh
Q 011846 236 PEDGTGPVELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (476)
Q Consensus 236 REnteG~~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~ 310 (476)
|||||| +|+|.++.. +.+++ ++++||++++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+||| +
T Consensus 147 REnTeG-~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva-~ 223 (375)
T 3vmk_A 147 RELTGG-IYFGKPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA-K 223 (375)
T ss_dssp EECSSB-TTTCSSCEEECCGGGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-T
T ss_pred eeCCCC-EecCCccccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH-H
Confidence 999999 999986642 24577 67999999999999999999999999999999999998 7799999999999 5
Q ss_pred hhccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccc
Q 011846 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTV 389 (476)
Q Consensus 311 eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSA 389 (476)
+|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||
T Consensus 224 eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSA 296 (375)
T 3vmk_A 224 DYP------DVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGSA 296 (375)
T ss_dssp TCT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCC
T ss_pred HCC------CceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCCc
Confidence 999 99999999999999999999999 99999999999999999999999999999999986 35899999999
Q ss_pred ccccccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhh
Q 011846 390 TRHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPY 468 (476)
Q Consensus 390 Pd~~~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~ 468 (476)
|| ||||| +|||+|+|||++|||+| +| +.++|++|++||.++|++|++|+||+|...|.+..+|++|
T Consensus 297 Pd-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~~l~~G~~T~Dl~g~~~G~~~~~T~e~ 363 (375)
T 3vmk_A 297 PD-----IAGQG-IANPVAQILSAALLLRHSLK-------LEDAALAIEAAVSKALSDGYLTCELLPASERSQAKSTSQM 363 (375)
T ss_dssp TT-----TTTSS-CSCCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTCCCGGGSCGGGGGGCCCHHHH
T ss_pred hh-----ccCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCCCchhccCCCCCCccCHHHH
Confidence 99 99999 99999999999999999 98 4579999999999999999999999653334456789999
Q ss_pred hhcccc
Q 011846 469 LLHVIT 474 (476)
Q Consensus 469 ~~~~i~ 474 (476)
+++||.
T Consensus 364 ~~aV~~ 369 (375)
T 3vmk_A 364 GDYIAQ 369 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 10
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=5.3e-103 Score=817.98 Aligned_cols=341 Identities=21% Similarity=0.207 Sum_probs=302.2
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCC--CCcHHHHHHHHhcCeEEEecccC
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATIT 155 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~--~lp~etleaik~~daiLkGavgt 155 (476)
..+|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+ ++|++++++|+++|++||||++|
T Consensus 36 ~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~t 115 (427)
T 3dms_A 36 QPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTT 115 (427)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCC
T ss_pred CCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCCC
Confidence 457999999999999999999888542 389999999999999999999 99999999999999999999999
Q ss_pred CCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEe
Q 011846 156 PDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235 (476)
Q Consensus 156 P~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlviv 235 (476)
|.+ ..++|+|++|||+||||||+||| |++ ||+++|+ +.++++|+|||
T Consensus 116 P~~---------~~~~s~~l~LRk~LdLyaNlRPv--~~~----pg~~spl------------------k~~~~vDivIv 162 (427)
T 3dms_A 116 PVG---------GGIRSLNVALRQELDLYVCLRPI--QYF----KGVPSPV------------------REPEKTNMVIF 162 (427)
T ss_dssp CC-------------CCHHHHHHHHTTCCEEEEEE--CCC----TTCCCSS------------------SCGGGCCEEEE
T ss_pred CCC---------cccCChhHHHHHHhCCeEEEEEe--ecC----CCCCCCC------------------CCCCCceEEEE
Confidence 974 24789999999999999999998 555 5556662 22356777888
Q ss_pred cCCCCCCeeeeeeeec-----------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECC
Q 011846 236 PEDGTGPVELDVYNFK-----------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKN 290 (476)
Q Consensus 236 REnteG~~Y~g~~~~~-----------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~Ka 290 (476)
|||||| +|+|.++.. .+++| ..++||++++|||+|+||+||++| ++|||+|||+
T Consensus 163 REnTeG-~Y~G~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~Ka 241 (427)
T 3dms_A 163 RENSED-IYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKG 241 (427)
T ss_dssp EECSSG-GGGCCEECTTCHHHHHHHHHHHHTSCCCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred EECCCC-EecCcccccCCcccccccccccccccccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 888877 777765431 12456 458999999999999999999998 5789999999
Q ss_pred CcccccchHHHHHHHHHHHhhhccc-------------cccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhh
Q 011846 291 TILKKYDGRFKDIFQQVYEERWRQK-------------FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSD 356 (476)
Q Consensus 291 NVlk~tdglf~~i~~eva~~eYp~~-------------f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSD 356 (476)
||||.|||||+++|+|||+++||++ +++++|+++|+|||+||||||++|++| ||||+|||||||||
T Consensus 242 NVlk~tdglfr~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD 321 (427)
T 3dms_A 242 NIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISD 321 (427)
T ss_dssp TTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHH
Confidence 9999999999999999996589963 456789999999999999999999999 99999999999999
Q ss_pred hHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHH
Q 011846 357 LLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKL 436 (476)
Q Consensus 357 laA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~I 436 (476)
++|+++|||||+||+|||++++ ||||+|||||| ||||| +|||+|+|||++|||+||| +.++|++|
T Consensus 322 ~aA~l~GslGl~pSanig~~~a--~fEpvHGSAPd-----IAGk~-iANP~A~IlS~amML~~lg-------~~~~A~~I 386 (427)
T 3dms_A 322 ALAAQVGGIGIAPGANLSDSVA--MFEATHGTAPK-----YAGKD-YVNPGSEILSAEMMLRHLG-------WTEAADVI 386 (427)
T ss_dssp HHHHHTTCTTTCEEEEECSSCE--EEEECSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHH
T ss_pred HHHHhcCCccccceeeeCCCcc--eEEeccCChhh-----hcCCC-cCCcHHHHHHHHHHHHhcC-------CHHHHHHH
Confidence 9999999999999999998774 89999999999 99999 9999999999999999998 45799999
Q ss_pred HHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 437 EAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 437 e~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
++||.++|++|.+|+||||...+.+.++|++|+++||.
T Consensus 387 e~AV~~vl~~G~~T~Dlgg~~~g~~~~~T~e~~daV~~ 424 (427)
T 3dms_A 387 ISAMEKSIKQKRVTYDFARLMEGATQVSCSGFGQVLIE 424 (427)
T ss_dssp HHHHHHHHHHTEECHHHHTTSSSCEECCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhhccccCCCCccCHHHHHHHHHH
Confidence 99999999999999999998777778999999999974
No 11
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=1.1e-102 Score=794.22 Aligned_cols=325 Identities=17% Similarity=0.186 Sum_probs=302.9
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
++|++||||||||||+++++++|.+. +++++|+++++|.+++++||+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~---- 77 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA---- 77 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC----
Confidence 57999999999999999999988655 7999999999999999999999999999999999999999999995
Q ss_pred cccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCC
Q 011846 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG 241 (476)
|. +|++|||+||||+|+||+ |++ ||+++|+ +++|+||+||||||
T Consensus 78 --------~~-~~l~lR~~ldlyan~RP~--~~~----pg~~~~~---------------------~~~D~vivREnteg 121 (336)
T 1wpw_A 78 --------AD-VVVKLRQIYDMYANIRPA--KSI----PGIDTKY---------------------GNVDILIVRENTED 121 (336)
T ss_dssp --------HH-HHHHHHHTTTCCEEEEEE--ECC----TTTCCSC---------------------SCCEEEEEEECSSB
T ss_pred --------cc-hHHHHHHHhCCEEEEEEE--ecc----CCCCCCC---------------------CCCcEEEEecCccC
Confidence 12 789999999999999998 554 5766662 47999999999999
Q ss_pred CeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCC
Q 011846 242 PVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (476)
Q Consensus 242 ~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~ 320 (476)
+|+|.++...++++ ..++||+++++||+|+||+||++|++|||+|||+||||.|||||+++|+|||+ + +
T Consensus 122 -~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~--------~ 191 (336)
T 1wpw_A 122 -LYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G--------K 191 (336)
T ss_dssp -TTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------T
T ss_pred -eEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------C
Confidence 99998766556788 66899999999999999999999999999999999999999999999999994 3 8
Q ss_pred eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCC
Q 011846 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (476)
Q Consensus 321 I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaG 399 (476)
|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++++ ||||+|||||| |||
T Consensus 192 I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~a--~fEp~HGSApd-----iaG 264 (336)
T 1wpw_A 192 VEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKA--LFEPVHGAAFD-----IAG 264 (336)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSCE--EEEESSCCCTT-----TTT
T ss_pred ceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCCc--eEeCCCCCchh-----hCC
Confidence 9999999999999999999999 999999999999999999999999999999999885 89999999999 999
Q ss_pred CCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhcccc
Q 011846 400 QETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 400 k~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|| +|||+|+|||++|||+|+|++|+|+++.++|++||+||.+++++| .+|+||||.+ .|++|+++||.
T Consensus 265 k~-iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~DlgG~~------~T~e~~dav~~ 333 (336)
T 1wpw_A 265 KN-IGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNA------TTDDLINEIYN 333 (336)
T ss_dssp SS-CCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGTCCC------CHHHHHHHHHH
T ss_pred CC-CcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccCCCC------CHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999 6999999843 58999999874
No 12
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.2e-102 Score=802.77 Aligned_cols=343 Identities=20% Similarity=0.202 Sum_probs=296.5
Q ss_pred eeecccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCC
Q 011846 82 VKVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 157 (476)
Q Consensus 82 ~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~ 157 (476)
..|.++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 20 ~~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~ 99 (390)
T 3u1h_A 20 GAMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPK 99 (390)
T ss_dssp ----CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCST
T ss_pred cCccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCC
Confidence 358889999999999999999999988654 7999999999999999999999999999999999999999999997
Q ss_pred CccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCC--CceEeeecccCCccccccccccCCCceEEEEe
Q 011846 158 ETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK--KPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235 (476)
Q Consensus 158 ~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~--~pivi~Re~ted~Y~~~e~~~~~~~~iDlviv 235 (476)
. ++.+....+.+.|++|||+||||||+||+ |++| |++ +|+ + .+..+++|+|||
T Consensus 100 ~---~~~~~~~~~~~~ll~LRk~ldLyANvRP~--k~~p----g~~~~spl-----------k-----~~~~~~vD~vIV 154 (390)
T 3u1h_A 100 W---DQNPSELRPEKGLLGIRKGLDLFANLRPV--KVYD----SLADASPL-----------K-----KEVIEGVDLVIV 154 (390)
T ss_dssp T---TSSCCSSSSSCCHHHHHHHTTEEEEEEEE--ECCG----GGTTSSSB-----------C-----HHHHSSCEEEEE
T ss_pred c---CCCCcccCccchHHHHHHHhCCeEEEEEe--eccC----CccccCCc-----------c-----cccccCCcEEEE
Confidence 3 32211122346789999999999999997 6665 444 663 1 001258999999
Q ss_pred cCCCCCCeeeeeeeec---CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhh
Q 011846 236 PEDGTGPVELDVYNFK---GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (476)
Q Consensus 236 REnteG~~Y~g~~~~~---~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~e 311 (476)
|||||| +|+|.++.. +.+++ ++++||++++|||+|+||+||++|++|||+|||+||| .+||||+++|+||| ++
T Consensus 155 REnTeG-~Y~g~~~~~~~~g~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva-~e 231 (390)
T 3u1h_A 155 RELTGG-LYFGEPSERYEEGEEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVA-KE 231 (390)
T ss_dssp EECSSB-SCC-------CTTCSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHH-TT
T ss_pred eeCCCC-eecCccccccCCCCceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHH-hH
Confidence 999999 999987753 24567 6799999999999999999999999999999999999 69999999999999 69
Q ss_pred hccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccc
Q 011846 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (476)
Q Consensus 312 Yp~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAP 390 (476)
|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+|||||
T Consensus 232 YP------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAP 304 (390)
T 3u1h_A 232 YP------DVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGSAP 304 (390)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCCCT
T ss_pred CC------CCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCChh
Confidence 99 99999999999999999999999 99999999999999999999999999999999865 359999999999
Q ss_pred cccccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhh
Q 011846 391 RHFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYL 469 (476)
Q Consensus 391 d~~~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~ 469 (476)
| ||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|.+|+||++ .|.+..+|++|+
T Consensus 305 D-----IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~AV~~vl~~G~~T~Dl~~--gG~~~~~T~e~~ 369 (390)
T 3u1h_A 305 D-----IAGKG-IANPLATILSAAMMLRYSFG-------LEEEAKAIEKAVEKVLAEGYRTADIAK--PGGKYVSTTEMT 369 (390)
T ss_dssp T-----TTTSS-CSCTHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHTCCBTTTSC--SSCCCBCHHHHH
T ss_pred h-----hcCCC-cCCcHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcChhhcc--CCCCccCHHHHH
Confidence 9 99999 99999999999999999 88 567999999999999999999999942 123456799999
Q ss_pred hcccc
Q 011846 470 LHVIT 474 (476)
Q Consensus 470 ~~~i~ 474 (476)
++||.
T Consensus 370 daV~~ 374 (390)
T 3u1h_A 370 DEVKA 374 (390)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 13
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=6.8e-103 Score=801.36 Aligned_cols=335 Identities=17% Similarity=0.159 Sum_probs=301.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...++
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 68999999999999999999999999999999999999999999974334
Q ss_pred cccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCC
Q 011846 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG 241 (476)
++ ..++|++ |++|||+||||||+||| +++|++.+ .+|+ +. ..++++|+|||||||||
T Consensus 84 ~~--~~~~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~--~spl-----------k~-----~~~~~iD~vivREnteg 140 (359)
T 2y3z_A 84 PR--KIRPETG-LLSLRKSQDLFANLRPA--KVFPGLER--LSPL-----------KE-----EIARGVDVLIVRELTGG 140 (359)
T ss_dssp CG--GGCHHHH-HHHHHHHTTEEEEEEEE--ECCTTCGG--GSSS-----------CH-----HHHTTCEEEEEEECSCS
T ss_pred Cc--ccccchh-HHHHHHHhCCEEEEEEe--eccCCCCC--CCCc-----------cc-----ccCCCceEEEEecCccc
Confidence 43 1235677 89999999999999997 66654421 2563 00 01257999999999999
Q ss_pred CeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCC
Q 011846 242 PVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (476)
Q Consensus 242 ~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~ 320 (476)
+|+|.++..+.+++ ++++||++++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++|| +
T Consensus 141 -~Y~g~e~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp------d 211 (359)
T 2y3z_A 141 -IYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGYP------D 211 (359)
T ss_dssp -TTTCSSCEECSSCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------T
T ss_pred -eEecCCCcCCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHCC------c
Confidence 99998764455677 66999999999999999999999999999999999999 9999999999999 7999 9
Q ss_pred eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCC
Q 011846 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKG 399 (476)
Q Consensus 321 I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaG 399 (476)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+|||||| |||
T Consensus 212 I~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~--~fEpvHGSAPd-----iAG 284 (359)
T 2y3z_A 212 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTP--VFEPVHGSAPD-----IAG 284 (359)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCC--EEEESSCCCGG-----GTT
T ss_pred EEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCCc--eeecCCCChhh-----hCC
Confidence 9999999999999999999999 999999999999999999999999999999999985 89999999999 999
Q ss_pred CCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 400 QETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 400 k~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|| +|||+|+|||++|||+| +| +.++|++|++||.+++++| +|+||||.+ .|++|+++||.
T Consensus 285 k~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g-~T~Dlgg~~------~T~e~~daV~~ 345 (359)
T 2y3z_A 285 KG-IANPTAAILSAAMMLEHAFG-------LVELARKVEDAVAKALLET-PPPDLGGSA------GTEAFTATVLR 345 (359)
T ss_dssp SS-CSCTHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHS-CCGGGTCCC------CHHHHHHHHHH
T ss_pred CC-CcCCHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHcC-CCCccCCCC------CHHHHHHHHHH
Confidence 99 99999999999999999 98 4569999999999999999 999999843 58999999874
No 14
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.4e-102 Score=799.11 Aligned_cols=336 Identities=20% Similarity=0.181 Sum_probs=300.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|. |
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~---~ 83 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPK---W 83 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG---G
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCC---c
Confidence 68999999999999999999888543 7999999999999999999999999999999999999999999996 3
Q ss_pred ccc-ccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCC--CceEeeecccCCccccccccccC-CCceEEEEecC
Q 011846 162 KEF-GLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK--KPICIGRHAFGDQYRATDTVIKG-PGKLKMVFDPE 237 (476)
Q Consensus 162 ~~~-~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~--~pivi~Re~ted~Y~~~e~~~~~-~~~iDlvivRE 237 (476)
+.. ...++|+++|++|||+||||||+||+ |++| |+. +|+ + ... ++++|+|||||
T Consensus 84 ~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~--~~~p----g~~~~spl-----------k-----~~~~~~~vD~vivRE 141 (361)
T 3udu_A 84 DNLPIDQRPERASLLPLRKHFNLFANLRPC--KIYE----SLTHASPL-----------K-----NEIIQKGVDILCVRE 141 (361)
T ss_dssp TTSCGGGSHHHHHHHHHHHHHTCCEEEEEE--ECCG----GGGGGSSB-----------C-----HHHHTTCCEEEEEEE
T ss_pred CCCCCCcCccccchHHHHHHcCCEEEEEEe--eccC----CccccCCC-----------c-----cccccCCCcEEEEcc
Confidence 321 12344555589999999999999997 6665 443 663 0 001 36899999999
Q ss_pred CCCCCeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 238 DGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 238 nteG~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
|||| +|+|.++.. .+++ ++++||++++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+||| ++||
T Consensus 142 nTeG-~Y~g~~~~~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~eyp--- 214 (361)
T 3udu_A 142 LTGG-IYFGKQDLG-KESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KDYQ--- 214 (361)
T ss_dssp CSSG-GGTSCEEEC-SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGCT---
T ss_pred cCCC-eecCccCCc-CceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HHCC---
Confidence 9999 999987654 5667 77999999999999999999999999999999999997 9999999999999 6999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~ 395 (476)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 215 ---dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd---- 286 (361)
T 3udu_A 215 ---DINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAPD---- 286 (361)
T ss_dssp ---TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCGG----
T ss_pred ---CCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChhh----
Confidence 99999999999999999999999 99999999999999999999999999999999876 3599999999999
Q ss_pred ccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 396 HQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 396 ~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+| +| +.++|++|++||.+++++|.+|+||||. +...|++|+++||.
T Consensus 287 -IAGk~-iANP~A~IlS~amML~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~DlgG~----~~~~T~e~~~aV~~ 353 (361)
T 3udu_A 287 -IAHLN-IANPIAQILSAALMLKYSFK-------EEQAAQDIENAISLALAQGKMTKDLNAK----SYLNTDEMGDCILE 353 (361)
T ss_dssp -GTTSS-CCCCHHHHHHHHHHHHHTSC-------CHHHHHHHHHHHHHHHHTTCCCTTTCSS----SCCCHHHHHHHHHH
T ss_pred -hcCCC-ccCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHcCCcCcCCCCC----CccCHHHHHHHHHH
Confidence 99999 99999999999999999 88 5679999999999999999999999873 34568999999874
No 15
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=5.8e-102 Score=806.79 Aligned_cols=345 Identities=21% Similarity=0.246 Sum_probs=299.8
Q ss_pred cceeecc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEE
Q 011846 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (476)
Q Consensus 80 ~~~~~~~--~I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLk 150 (476)
+|++|.+ +|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 4677755 6999999999999999999888543 389999999999999999999999999999999999999
Q ss_pred ecccCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCce
Q 011846 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (476)
Q Consensus 151 GavgtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~i 230 (476)
||++||.+ ++|+|+|++|||+||||+|+||| +++ ||+++|+ +.++++
T Consensus 97 Gav~tP~~---------~~~~s~~l~LR~~LdlyanvRPv--~~~----~g~~spl------------------k~~~~v 143 (409)
T 2e0c_A 97 GPLETPIG---------KGWKSVNVAIRLMLDLYANIRPV--KYI----EGLESPL------------------KHPEKV 143 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEE--ECC----TTCCCSB------------------SCCTTC
T ss_pred CCccCCCc---------ccccChhHHHHHHcCCEEEEEEE--ecc----CCCCCCC------------------CCccCC
Confidence 99999963 35789999999999999999998 555 4555662 223578
Q ss_pred EEEEecCCCCCCeeeeeeeec--------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 011846 231 KMVFDPEDGTGPVELDVYNFK--------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLST 288 (476)
Q Consensus 231 DlvivREnteG~~Y~g~~~~~--------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~ 288 (476)
|+||+|||||| +|+|.++.. .++++ ..++||+++++||+|+||+||++| +++||+||
T Consensus 144 DivIvREnteg-~Y~g~e~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~ 222 (409)
T 2e0c_A 144 DMIIFRENTDD-LYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMH 222 (409)
T ss_dssp EEEEEEECSSG-GGGCCEECTTSHHHHHHHHHHHHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEcCCCC-EeCCcccccCCCcccchhhccchhccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 88888888888 888876532 23677 669999999999999999999998 46799999
Q ss_pred CCCcccccchHHHHHHHHHHHhhhccccc-----------cCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhh
Q 011846 289 KNTILKKYDGRFKDIFQQVYEERWRQKFE-----------EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSD 356 (476)
Q Consensus 289 KaNVlk~tdglf~~i~~eva~~eYp~~f~-----------~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSD 356 (476)
|+||||.|||+|+++|+|||+++||++|. ..+|+++|+|||+|+||||++|++| ||||+|||||||||
T Consensus 223 KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD 302 (409)
T 2e0c_A 223 KGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISD 302 (409)
T ss_dssp CTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred CccchhhhhhHHHHHHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHH
Confidence 99999999999999999999559996552 2459999999999999999999999 99999999999999
Q ss_pred hHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHH
Q 011846 357 LLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKL 436 (476)
Q Consensus 357 laA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~I 436 (476)
++|+++|||||+||+|||+++ .||||+|||||| ||||| +|||+|+|||++|||+|||+ .++|++|
T Consensus 303 ~aa~l~GslGl~pSanig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~ammL~~lg~-------~~~A~~I 367 (409)
T 2e0c_A 303 AAGALIGNIGMLGGANIGDEG--GMFEAIHGTAPK-----YAGKN-VANPTGIIKAGELMLRWMGW-------NEAADLI 367 (409)
T ss_dssp HHHHTTSCGGGCEEEEEETTE--EEEEESSCCCGG-----GTTTT-CSCTHHHHHHHHHHHHHHTC-------HHHHHHH
T ss_pred HHHHhcCCcccCceEEECCCc--eEEecCCCChhh-----hcCCc-ccCcHHHHHHHHHHHHhCCC-------HHHHHHH
Confidence 999999999999999999765 499999999999 99999 99999999999999999994 5699999
Q ss_pred HHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 437 EAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 437 e~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
++||.+++++|++|+||||.. +.+.+.|++|+++||.
T Consensus 368 e~Av~~~l~~g~~T~Dl~g~~-g~~~~~T~e~~daV~~ 404 (409)
T 2e0c_A 368 EKAINMAIRDKKVTQDIARFM-GVKALGTKEYADELIK 404 (409)
T ss_dssp HHHHHHHHHTTCCCHHHHHHH-TSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccccccC-CCCCcCHHHHHHHHHH
Confidence 999999999999999998754 3356789999999974
No 16
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=9e-102 Score=807.87 Aligned_cols=348 Identities=22% Similarity=0.236 Sum_probs=303.6
Q ss_pred cceeecc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEE
Q 011846 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (476)
Q Consensus 80 ~~~~~~~--~I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLk 150 (476)
++++|.+ +|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+||
T Consensus 12 ~~~~vp~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lk 91 (423)
T 1hqs_A 12 GVLNVPNNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIK 91 (423)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEE
Confidence 3566643 5999999999999999999887543 389999999999999999999999999999999999999
Q ss_pred ecccCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCce
Q 011846 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKL 230 (476)
Q Consensus 151 GavgtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~i 230 (476)
||++||.+ ++|+|+|++|||+||||+|+||| +++| |+++|+ +.++++
T Consensus 92 Gav~tP~~---------~~~~s~nl~LRk~LdlyanvRPv--~~~p----g~~spl------------------k~~~~v 138 (423)
T 1hqs_A 92 GPLTTPVG---------GGIRSLNVALRQELDLFVCLRPV--RYFT----GVPSPV------------------KRPEDT 138 (423)
T ss_dssp CCCCCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECCT----TCCCSB------------------SCGGGC
T ss_pred CCccCCCC---------cCcCChhHHHHHHcCCEEEEEEE--eccC----CCCCCC------------------CCCCCC
Confidence 99999963 46889999999999999999998 6665 555552 122467
Q ss_pred EEEEecCCCCCCeeeeeeeec-----------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEE
Q 011846 231 KMVFDPEDGTGPVELDVYNFK-----------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLY 285 (476)
Q Consensus 231 DlvivREnteG~~Y~g~~~~~-----------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt 285 (476)
|+||+|||||| +|+|.++.. +++++ ..++||+++++||+|+||+||++| +++||
T Consensus 139 DivIvREnteg-~Y~G~e~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt 217 (423)
T 1hqs_A 139 DMVIFRENTED-IYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVT 217 (423)
T ss_dssp EEEEEEECSCG-GGGCCEECTTCHHHHHHHHHHHHHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred cEEEEecCCCC-eecccccccCCccccceeccccccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 77777777777 777665431 23677 569999999999999999999998 67899
Q ss_pred EEECCCcccccchHHHHHHHHHHHhhhcccc--------------------------ccCCeEEeeEeHHHHHHHHHhCC
Q 011846 286 LSTKNTILKKYDGRFKDIFQQVYEERWRQKF--------------------------EEHSIWYEHRLIDDMVAYAIKSE 339 (476)
Q Consensus 286 ~v~KaNVlk~tdglf~~i~~eva~~eYp~~f--------------------------~~~~I~~e~~lVDa~a~~LV~~P 339 (476)
+|||+||||.|||+|+++|+|||+++||++. ++.+|+++|+|||+|+||||++|
T Consensus 218 ~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P 297 (423)
T 1hqs_A 218 LVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRP 297 (423)
T ss_dssp EEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCG
T ss_pred EEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCC
Confidence 9999999999999999999999955999531 34459999999999999999999
Q ss_pred Cce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHH
Q 011846 340 GGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 418 (476)
Q Consensus 340 ~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~ 418 (476)
++| ||||+|||||||||++|+++|||||+||+|||++....||||+|||||| ||||| +|||+|+|||++|||+
T Consensus 298 ~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~~~alfEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~ 371 (423)
T 1hqs_A 298 NEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPK-----YAGLD-KVNPSSVILSGVLLLE 371 (423)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESCCCCGG-----GTTTT-CSCCHHHHHHHHHHHH
T ss_pred CCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCCCceEEecCCCChhh-----hCCCC-CcCcHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999942113599999999999 99999 9999999999999999
Q ss_pred HhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 419 HRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 419 hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +.++|++|++||.+++++|.+|+||||..++.+..+|++|+++||.
T Consensus 372 hlg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g~~~g~~~~~T~e~~daV~~ 420 (423)
T 1hqs_A 372 HLG-------WNEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKCSEFGEELIK 420 (423)
T ss_dssp HHT-------CHHHHHHHHHHHHHHHHTTEECHHHHTTSSSCEECCHHHHHHHHHH
T ss_pred HcC-------CHHHHHHHHHHHHHHHHcCCcccccccccCCCCCcCHHHHHHHHHH
Confidence 999 4569999999999999999999999998776556799999999974
No 17
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.5e-101 Score=792.69 Aligned_cols=325 Identities=19% Similarity=0.200 Sum_probs=293.1
Q ss_pred cccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHh-cCeEEEecccCCCCc
Q 011846 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLK-YNVAIKCATITPDET 159 (476)
Q Consensus 85 ~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~-~daiLkGavgtP~~~ 159 (476)
.++|++||||||||||+++++++|.+. +++++|+++++|.+++++||+++|++++++|++ +|++||||+++|.+
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~- 88 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTH- 88 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSS-
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCC-
Confidence 478999999999999999999998653 689999999999999999999999999999999 59999999999974
Q ss_pred cccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCC
Q 011846 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (476)
Q Consensus 160 ~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnt 239 (476)
+. .+|+|+|++|||+||||+|+||| |++| ++. + .++|+|||||||
T Consensus 89 --~~----~~~~s~~l~LRk~ldlyaNvRP~--~~~~----g~~-~----------------------~~vD~vivREnT 133 (366)
T 3ty4_A 89 --KV----AGYSSPIVALRKKMGLYANVRPV--KSLD----GAK-G----------------------KPVDLVIVRENT 133 (366)
T ss_dssp --CC----TTCCCHHHHHHHHTTCCEEEEEE--ECCT----TCS-S----------------------SCCEEEEEEECS
T ss_pred --CC----cccccchHHHHHHhCCeEEEEEE--eccC----CCC-C----------------------CCCcEEEEeeCC
Confidence 21 25789999999999999999997 6664 431 1 246777777777
Q ss_pred CCCeeeeeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcC-------------CCCEEEEECCCcccccchHHH
Q 011846 240 TGPVELDVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSK-------------KWPLYLSTKNTILKKYDGRFK 301 (476)
Q Consensus 240 eG~~Y~g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-------------~kkVt~v~KaNVlk~tdglf~ 301 (476)
|| +|+|.++.. +++++ ++++||++++|||+|+||+||++| ++|||+|||+|||+.+||||+
T Consensus 134 eG-~Y~g~e~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~ 212 (366)
T 3ty4_A 134 EC-LYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFR 212 (366)
T ss_dssp CB-GGGCCEEEEECCTTCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHH
T ss_pred CC-EeecCcceeccCCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHH
Confidence 77 777766542 35788 669999999999999999999998 689999999999999999999
Q ss_pred HHHHHH---HHhhhccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCC
Q 011846 302 DIFQQV---YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDG 377 (476)
Q Consensus 302 ~i~~ev---a~~eYp~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~ 377 (476)
++|+|| + ++|| +|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++.
T Consensus 213 ~~~~ev~~~a-~eyp------dV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~ 285 (366)
T 3ty4_A 213 ESCRHAQSLD-PSYA------SINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNF 285 (366)
T ss_dssp HHHHHHGGGC-GGGT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSC
T ss_pred HHHHHHHHhH-hhCC------CceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCc
Confidence 999999 6 7999 99999999999999999999999 99999999999999999999999999999999765
Q ss_pred ceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcc
Q 011846 378 KTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAIL 456 (476)
Q Consensus 378 a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~ 456 (476)
.||||+|||||| ||||| +|||+|+|||++|||+||| +.++|++|++||.+++++| .+|+||||.
T Consensus 286 --a~fEpvHGSAPd-----IaGk~-iANP~A~IlS~amML~~lg-------~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~ 350 (366)
T 3ty4_A 286 --VMSEPVHGSAPD-----IAGRG-IANPVATFRSVALMLEFMG-------HQDAAADIYTAVDKVLTEGKVLTPDLGGK 350 (366)
T ss_dssp --EEECCSSCCCTT-----TTTSS-CCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHCSSCCGGGTSC
T ss_pred --eEEecCCCChhh-----cCCCC-ccCcHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcCCccCcccCCC
Confidence 489999999999 99999 9999999999999999998 4579999999999999999 799999986
Q ss_pred cCCCCccCchhhhhcccc
Q 011846 457 VHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 457 ~~~~~~~~~~~~~~~~i~ 474 (476)
+ .|++|+++||.
T Consensus 351 ~------~T~e~~daV~~ 362 (366)
T 3ty4_A 351 S------GTNEITDAVLA 362 (366)
T ss_dssp C------CHHHHHHHHHH
T ss_pred c------CHHHHHHHHHH
Confidence 4 47999999874
No 18
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=2.5e-102 Score=795.95 Aligned_cols=325 Identities=22% Similarity=0.267 Sum_probs=301.2
Q ss_pred ecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccc
Q 011846 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (476)
Q Consensus 84 ~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~ 163 (476)
..++|++||||||||||+++++++|.+.+++|+|+++++|.++ +++|+++|++++++|+++|++||||+++|.+
T Consensus 20 ~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~----- 93 (354)
T 3blx_B 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG----- 93 (354)
T ss_dssp SCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC-------
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC-----
Confidence 3478999999999999999999999888999999999999999 9999999999999999999999999999963
Q ss_pred cccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCe
Q 011846 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (476)
Q Consensus 164 ~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~ 243 (476)
.+|+|+|++|||+||||+|+||+ +++ |++++|+ +++|+||||||||| +
T Consensus 94 ----~~~~s~~l~lR~~ldlyan~RP~--~~~----pg~~s~~---------------------~~vD~vivREnteg-~ 141 (354)
T 3blx_B 94 ----KGHRSLNLTLRKTFGLFANVRPA--KSI----EGFKTTY---------------------ENVDLVLIRENTEG-E 141 (354)
T ss_dssp ------CCCHHHHHHHHHTEEEEEEEE--ECC----TTCCCSS---------------------CSCEEEEEEECSSE-E
T ss_pred ----ccccCchHHHHHHcCCEEEEEEe--ccc----CCCCCCC---------------------CCccEEEEecCcCC-c
Confidence 24789999999999999999998 555 5666762 47999999999999 9
Q ss_pred eeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCe
Q 011846 244 ELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (476)
Q Consensus 244 Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I 321 (476)
|+|.++...++++ ++++||++++|||+|+||+||++| ++|||+|||+||||.+||||+++|+||| ++|| +|
T Consensus 142 Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~eyp------dI 214 (354)
T 3blx_B 142 YSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEYP------DL 214 (354)
T ss_dssp EEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGCT------TS
T ss_pred ccCCcccccCCEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHCC------Cc
Confidence 9999876556788 679999999999999999999999 6889999999999999999999999999 6999 99
Q ss_pred EEeeEeHHHHHHHHHhCCCce---EEEecCCccchhhhhHhhh-cCCcccccceecCCCCceeeeecccccccccccccc
Q 011846 322 WYEHRLIDDMVAYAIKSEGGY---VWACKNYDGDVQSDLLAQG-FGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQ 397 (476)
Q Consensus 322 ~~e~~lVDa~a~~LV~~P~~F---ViVt~NlfGDILSDlaA~l-~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~I 397 (476)
+++|+|||+|+||||++|++| ||||+|||||||||++|++ +|||||+||+|||++++ ||||+|||||| |
T Consensus 215 ~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~a--~fEp~HGSAPd-----i 287 (354)
T 3blx_B 215 TLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKIS--IFEAVHGSAPD-----I 287 (354)
T ss_dssp EEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSCE--EEEECSCCCGG-----G
T ss_pred eEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCce--EEecCCCChhh-----h
Confidence 999999999999999999999 9999999999999999999 99999999999999874 89999999999 9
Q ss_pred CCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC--CCCcccCcccCCCCccCchhhhhcccc
Q 011846 398 KGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG--KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 398 aGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G--~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|||| +|||+|+|||++|||+||| +.++|++||+||.+++++| .+|+||||.+ .|++|+++||.
T Consensus 288 AGk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g~~~~T~DlgG~~------~T~e~~dav~~ 352 (354)
T 3blx_B 288 AGQD-KANPTALLLSSVMMLNHMG-------LTNHADQIQNAVLSTIASGPENRTGDLAGTA------TTSSFTEAVIK 352 (354)
T ss_dssp TTTT-CCCTHHHHHHHHHHHHHHT-------CHHHHHHHHHTHHHHHTSSTTSSCGGGTCCC------CHHHHHHHHHH
T ss_pred cCCC-ccCcHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCCccCCCcCCCC------CHHHHHHHHHh
Confidence 9999 9999999999999999998 4569999999999999999 7999999853 58999999874
No 19
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=8.8e-102 Score=794.91 Aligned_cols=340 Identities=18% Similarity=0.131 Sum_probs=300.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|....+
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 69999999999999999999999999999999999999999999974333
Q ss_pred cccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCC-CceEEEEecCCCC
Q 011846 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGP-GKLKMVFDPEDGT 240 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~-~~iDlvivREnte 240 (476)
++ ..++++++|++|||+||||+|+||| +.+|++.+ .+|+ + -+.. +++|+||||||||
T Consensus 85 ~~--~~~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~--~spl-----------k-----~~~~~~~vDivivREnte 142 (363)
T 1cnz_A 85 PP--ESQPERGALLPLRKHFKLFSNLRPA--KLYQGLEA--FCPL-----------R-----ADIAANGFDILCVRELTG 142 (363)
T ss_dssp CG--GGSTTHHHHHHHHHHHTCCEEEEEE--ECCTTCGG--GCSB-----------C-----HHHHHHCCEEEEEEECSS
T ss_pred Cc--ccCcccchHHHHHHHcCCEEEEEEE--EecCCccC--CCCC-----------c-----ccccCCCCCEEEEecccC
Confidence 33 1246678899999999999999997 66654421 2452 0 0001 4799999999999
Q ss_pred CCeeeeeeee-c---CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccc
Q 011846 241 GPVELDVYNF-K---GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (476)
Q Consensus 241 G~~Y~g~~~~-~---~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~ 315 (476)
| +|+|.++. . +.+++ ++++||+++++||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++||
T Consensus 143 g-~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp-- 217 (363)
T 1cnz_A 143 G-IYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KTYP-- 217 (363)
T ss_dssp G-GGTCSSCEEECCGGGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT--
T ss_pred C-eecCCcCccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHCC--
Confidence 9 99998532 1 23567 67999999999999999999999988999999999999 9999999999999 7999
Q ss_pred cccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccc
Q 011846 316 FEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFR 394 (476)
Q Consensus 316 f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~ 394 (476)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 218 ----dI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAPd--- 289 (363)
T 1cnz_A 218 ----DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAPD--- 289 (363)
T ss_dssp ----TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCGG---
T ss_pred ----CceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChhh---
Confidence 99999999999999999999999 99999999999999999999999999999999987 3599999999999
Q ss_pred cccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCccc-CcccCCCCccCchhhhhcc
Q 011846 395 LHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL-AILVHGPKYILPSPYLLHV 472 (476)
Q Consensus 395 ~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL-gG~~~~~~~~~~~~~~~~~ 472 (476)
||||| +|||+|+|||++|||+| || +.++|++|++||.+++++|.+|+|| ||. +...|++|+++|
T Consensus 290 --iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~gG~----~~~~T~e~~daV 355 (363)
T 1cnz_A 290 --IAGKN-IANPIAQILSLALLLRYSLD-------ANDAATAIEQAINRALEEGVRTGDLARGA----AAVSTDEMGDII 355 (363)
T ss_dssp --GTTTT-CSCCHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHTTCCCGGGTTTT----TCCCHHHHHHHH
T ss_pred --hcCCC-ccCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHhcCCcCcccCCCC----CCCCHHHHHHHH
Confidence 99999 99999999999999999 98 4679999999999999999999999 551 223699999998
Q ss_pred cc
Q 011846 473 IT 474 (476)
Q Consensus 473 i~ 474 (476)
|.
T Consensus 356 ~~ 357 (363)
T 1cnz_A 356 AR 357 (363)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-101 Score=804.44 Aligned_cols=345 Identities=20% Similarity=0.198 Sum_probs=305.2
Q ss_pred cceeecc--cEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecc
Q 011846 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCAT 153 (476)
Q Consensus 80 ~~~~~~~--~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGav 153 (476)
+|++|.+ +|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++|+++|+++||+||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 4777763 5999999999999999999988654 799999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEE
Q 011846 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (476)
Q Consensus 154 gtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlv 233 (476)
+||.+ ++|+|+|++|||+||||||+||| +.+ ||+++|+ +.++++|+|
T Consensus 100 ~tP~~---------~~~~s~~l~LR~~Ldlyan~RPv--~~~----~g~~spl------------------k~~~~vDiv 146 (412)
T 2iv0_A 100 TTPVG---------GGYRSLNVTIRQVLDLYANVRPV--YYL----KGVPSPI------------------KHPEKVNFV 146 (412)
T ss_dssp CCCSS---------SSSSHHHHHHHHHTTCCEEEEEE--ECC----TTSCCSB------------------SCGGGCEEE
T ss_pred cCCCC---------ccccChhHHHHHHcCCeEEEEEE--Eec----CCCCCCC------------------CCcCCCCEE
Confidence 99963 35789999999999999999998 555 4555662 223478888
Q ss_pred EecCCCCCCeeeeeeeec--------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcCC-CCEEEEECCC
Q 011846 234 FDPEDGTGPVELDVYNFK--------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNT 291 (476)
Q Consensus 234 ivREnteG~~Y~g~~~~~--------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~-kkVt~v~KaN 291 (476)
|+|||||| +|+|.++.. .++++ ..+++|+++++||+|+||+||++|+ ++||+|||+|
T Consensus 147 IvREnTeg-~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaN 225 (412)
T 2iv0_A 147 IFRENTED-VYAGIEWPRGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGN 225 (412)
T ss_dssp EEEECSSS-GGGCCEECTTCHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred EEecCCCC-EeCCcccccCCccccchhhcccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence 88888888 888876542 23567 6699999999999999999999984 6799999999
Q ss_pred cccccchHHHHHHHHHHHhhhccccc--------------cCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhh
Q 011846 292 ILKKYDGRFKDIFQQVYEERWRQKFE--------------EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSD 356 (476)
Q Consensus 292 Vlk~tdglf~~i~~eva~~eYp~~f~--------------~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSD 356 (476)
|||.|||+|+++|+|||+++||++|. +.+|+++|+|||+|+||||++|++| ||||+|||||||||
T Consensus 226 Vlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD 305 (412)
T 2iv0_A 226 IMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSD 305 (412)
T ss_dssp TCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHH
Confidence 99999999999999999559996552 2459999999999999999999999 99999999999999
Q ss_pred hHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHH
Q 011846 357 LLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKL 436 (476)
Q Consensus 357 laA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~I 436 (476)
++|+++|||||+||+|||++. .||||+|||||| ||||| +|||+|+|||++|||+|+|+ .++|++|
T Consensus 306 ~aA~l~GslGlapsanig~~~--a~fEp~HGSAPd-----iAGk~-iANP~A~IlS~amML~~lg~-------~~~A~~I 370 (412)
T 2iv0_A 306 AAAALIGGLGIAPGSNIGDGI--GVFEPVHGSAPK-----YAGQN-KVNPTAEILTGALMFEYIGW-------KDASEMI 370 (412)
T ss_dssp HHHHHTTCGGGCEEEEEETTE--EEEEESSCCCST-----TTTSS-CSCCHHHHHHHHHHHHHTTC-------HHHHHHH
T ss_pred HHHHhcCCccccceEEECCCc--eEEeCCCCChhh-----cCCCc-ccCcHHHHHHHHHHHHhCCC-------HHHHHHH
Confidence 999999999999999999765 499999999999 99999 99999999999999999994 5699999
Q ss_pred HHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 437 EAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 437 e~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
++||.+++++|++|+|||+.. |.+.+.|++|+++||.
T Consensus 371 e~Av~~~l~~g~~T~Dl~~~~-G~~~~~T~e~~daV~~ 407 (412)
T 2iv0_A 371 KKAVEMTISSGIVTYDIHRHM-GGTKVGTREFAEAVVE 407 (412)
T ss_dssp HHHHHHHHHTTEECHHHHHHH-CSEECCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccccccccc-CCCCcCHHHHHHHHHH
Confidence 999999999999999998432 2245679999999974
No 21
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=4.7e-101 Score=803.20 Aligned_cols=346 Identities=22% Similarity=0.217 Sum_probs=303.7
Q ss_pred cceeecc--cEEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCC--CCcHHHHHHHHhcCeE
Q 011846 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVA 148 (476)
Q Consensus 80 ~~~~~~~--~I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~--~lp~etleaik~~dai 148 (476)
++++|.+ +|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+ ++|++++++|+++||+
T Consensus 19 ~~~~vp~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~ 98 (429)
T 2d4v_A 19 GVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVA 98 (429)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEE
T ss_pred CeEEcCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEE
Confidence 3566643 5999999999999999999888543 389999999999999999999 9999999999999999
Q ss_pred EEecccCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCC
Q 011846 149 IKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPG 228 (476)
Q Consensus 149 LkGavgtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~ 228 (476)
||||+++|.+ ++|+|+|++|||+||||+|+||| +.+| |+++|+ +.++
T Consensus 99 lkGav~tP~~---------~~~~s~~l~LRk~LdLyanvRPv--~~~~----gv~spl------------------k~~~ 145 (429)
T 2d4v_A 99 IKGPLETPVG---------GGIRSLNVAMRQDLDLYVCLRPV--RYFE----GTPSPM------------------RHPE 145 (429)
T ss_dssp EECCCCCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECCT----TCCCSB------------------SCGG
T ss_pred EECCccCCCc---------ccccChhHHHHHHcCCEEEEEEE--EecC----CCCCCC------------------CCcC
Confidence 9999999963 35789999999999999999997 6654 445552 2224
Q ss_pred ceEEEEecCCCCCCeeeeeeeec-----------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCC
Q 011846 229 KLKMVFDPEDGTGPVELDVYNFK-----------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWP 283 (476)
Q Consensus 229 ~iDlvivREnteG~~Y~g~~~~~-----------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kk 283 (476)
++|+||+|||||| +|+|.++.. .++++ ..+++|+++++||+|+||+||++| +++
T Consensus 146 ~vDivIvREnTeg-~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkk 224 (429)
T 2d4v_A 146 KVDMVIFRENSED-IYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPS 224 (429)
T ss_dssp GCEEEEEEECSCG-GGGCCEECTTCHHHHHHHHHHHHTSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCEEEEEeCCCC-eecCcccccCCcccccceeccccccccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCe
Confidence 6777777777777 777765431 23567 568999999999999999999998 467
Q ss_pred EEEEECCCcccccchHHHHHHHHHHHhhhccccc--------------------------cCCeEEeeEeHHHHHHHHHh
Q 011846 284 LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE--------------------------EHSIWYEHRLIDDMVAYAIK 337 (476)
Q Consensus 284 Vt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~--------------------------~~~I~~e~~lVDa~a~~LV~ 337 (476)
||+|||+||||.|||||+++|+|||+++||++|. ..+|+++|+|||+|+||||+
T Consensus 225 VT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~ 304 (429)
T 2d4v_A 225 VSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILL 304 (429)
T ss_dssp EEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHH
T ss_pred EEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhh
Confidence 9999999999999999999999999559996552 23499999999999999999
Q ss_pred CCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHH
Q 011846 338 SEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRG 416 (476)
Q Consensus 338 ~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amM 416 (476)
+|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+|||||| ||||| +|||+|+|||++||
T Consensus 305 ~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~a--~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amM 376 (429)
T 2d4v_A 305 RPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHA--IFEATHGTAPD-----IAGQG-KANPSSLILSAVMM 376 (429)
T ss_dssp CGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECSSCE--EEECSCCCCTT-----TTTTT-CCCCHHHHHHHHHH
T ss_pred CcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECCCce--EEecCCCChhH-----hcCCC-CcCcHHHHHHHHHH
Confidence 99999 999999999999999999999999999999997764 89999999999 99999 99999999999999
Q ss_pred HHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 417 LEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 417 L~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
|+|||+ .++|++|++||.++|++|.+|+||||..+|.+...|++|+++||.
T Consensus 377 L~hlg~-------~~~A~~Ie~Av~~~l~~g~~T~Dlg~~~~g~~~~~T~e~~daV~~ 427 (429)
T 2d4v_A 377 LEHLGW-------GEAAQAIVAAMNATIAAGEVTGDLAALRGDVPALSTTEFTAALIR 427 (429)
T ss_dssp HHHTTC-------HHHHHHHHHHHHHHHHTTCEEHHHHTTCTTCCEECHHHHHHHHHT
T ss_pred HHHcCC-------HHHHHHHHHHHHHHHHcCCccccccccCCCCCCcCHHHHHHHHHh
Confidence 999994 569999999999999999999999987777555799999999984
No 22
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=4.5e-101 Score=810.61 Aligned_cols=336 Identities=20% Similarity=0.220 Sum_probs=309.4
Q ss_pred ccceeec----ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcC-CCCcHHHHHHHHhcCeEEEecc
Q 011846 79 IDRVKVQ----NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCAT 153 (476)
Q Consensus 79 ~~~~~~~----~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg-~~lp~etleaik~~daiLkGav 153 (476)
-.||.|. ++|++||||||||||+++++++|.+.+++|+|+++++|.+++++|| +++|++++++|+++||+||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 3578886 7899999999999999999999988899999999999999999999 9999999999999999999999
Q ss_pred cCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEE
Q 011846 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (476)
Q Consensus 154 gtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlv 233 (476)
++|.+ .+|+|+|++|||+||||||+||+ |++| ++++|+ + ++++|+|
T Consensus 89 gtP~~---------~~~~s~~l~LRk~LdLyaNlRP~--k~~p----gl~spl------------------k-~~~vD~v 134 (496)
T 2d1c_A 89 ETPVG---------YGEKSANVTLRKLFETYANVRPV--REFP----NVPTPY------------------A-GRGIDLV 134 (496)
T ss_dssp CCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECBT----TBCCTT------------------T-TSCCEEE
T ss_pred cCCCc---------ccccChHHHHHHHhCCEEEEEEE--eecC----CCCccc------------------c-CCCccEE
Confidence 99973 35789999999999999999997 6665 555661 1 2489999
Q ss_pred EecCCCCCCeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhh
Q 011846 234 FDPEDGTGPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (476)
Q Consensus 234 ivREnteG~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~e 311 (476)
|||||||| +|+|.++...++++ ..++||++++|||+|+||+||++| ++|||+|||+||||.|||||+++|+||+ ++
T Consensus 135 IVREnTEG-~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa-~e 212 (496)
T 2d1c_A 135 VVRENVED-LYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA-QE 212 (496)
T ss_dssp EEEECSSB-GGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHH-TT
T ss_pred EEeeCcCc-eEeceeEecCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHH-HH
Confidence 99999999 99998876566888 558899999999999999999999 6889999999999999999999999998 69
Q ss_pred hccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccc
Q 011846 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVT 390 (476)
Q Consensus 312 Yp~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAP 390 (476)
|| +|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+|||||
T Consensus 213 YP------dI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~a--~FEpvHGSAP 284 (496)
T 2d1c_A 213 YP------DIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVA--IFEAVHGSAP 284 (496)
T ss_dssp CT------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSCE--EEEESSCCCT
T ss_pred CC------CceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCCc--eeeCCCCchh
Confidence 99 99999999999999999999999 999999999999999999999999999999999875 8999999999
Q ss_pred cccccccCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhh
Q 011846 391 RHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYL 469 (476)
Q Consensus 391 d~~~~~IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~ 469 (476)
| ||||| +|||+|+|||++|||+|+|+ .++|++|++||.+++++| .+|+||||.. +...|++|+
T Consensus 285 D-----IAGk~-iANP~A~IlSaamML~hlG~-------~~~A~~Ie~AV~~vl~~G~~~T~DLgg~~---~~~sT~e~~ 348 (496)
T 2d1c_A 285 K-----YAGKN-VINPTAVLLSAVMMLRYLEE-------FATADLIENALLYTLEEGRVLTGDVVGYD---RGAKTTEYT 348 (496)
T ss_dssp T-----TTTSS-CCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTSSCBHHHHCTT---TCBCHHHHH
T ss_pred h-----hcCCC-ccCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHcCCeeccccCCCC---CCcCHHHHH
Confidence 9 99999 99999999999999999994 569999999999999999 7999999852 234799999
Q ss_pred hcccc
Q 011846 470 LHVIT 474 (476)
Q Consensus 470 ~~~i~ 474 (476)
++||.
T Consensus 349 daV~~ 353 (496)
T 2d1c_A 349 EAIIQ 353 (496)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 23
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=7.6e-102 Score=791.07 Aligned_cols=327 Identities=17% Similarity=0.193 Sum_probs=298.9
Q ss_pred ceeecccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCcc
Q 011846 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (476)
Q Consensus 81 ~~~~~~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~ 160 (476)
|....++|++||||||||||+++++++|.+.+++|+|+++++|. ++|+++|++++++|+++|++||||+++|..
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-- 86 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-- 86 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH--
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC--
Confidence 44455799999999999999999999998889999999999997 799999999999999999999999999942
Q ss_pred ccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCC
Q 011846 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (476)
Q Consensus 161 ~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnte 240 (476)
..+|+|+|++|||+||||+|+||| +++ ||+++|+ +++|+||||||||
T Consensus 87 ------~~~~~s~~l~lR~~ldlyan~RP~--~~~----pg~~~~~---------------------~~vD~vivREnte 133 (349)
T 3blx_A 87 ------QTGHGSLNVALRKQLDIYANVALF--KSL----KGVKTRI---------------------PDIDLIVIRENTE 133 (349)
T ss_dssp ------HHTCHHHHHHHHHTSCEEEEEEEE--ECC----TTCCCSS---------------------CSCEEEEEEECSS
T ss_pred ------CCCccCchHHHHHHcCCEEEEEEE--ecc----CCCCCCC---------------------CCcCEEEEecCCC
Confidence 125788999999999999999998 555 5666662 4799999999999
Q ss_pred CCeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEECCCcccccchHHHHHHHHHHHhhhcccccc
Q 011846 241 GPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (476)
Q Consensus 241 G~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~ 318 (476)
| +|+|.++...++++ ++++||++++|||+|+||+||++| ++|||+|||+||||.|||||+++|+|||+++||
T Consensus 134 g-~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp----- 207 (349)
T 3blx_A 134 G-EFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP----- 207 (349)
T ss_dssp G-GGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCT-----
T ss_pred C-cEeCCceeccCCeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCC-----
Confidence 9 99999876556788 669999999999999999999999 678999999999999999999999999966999
Q ss_pred CCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccc-cccccccccc
Q 011846 319 HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRLH 396 (476)
Q Consensus 319 ~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~H-GSAPd~~~~~ 396 (476)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++++ ||||+| |||||
T Consensus 208 -~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~a--~fEpvH~GSAPd----- 279 (349)
T 3blx_A 208 -DIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYA--VFEPGSRHVGLD----- 279 (349)
T ss_dssp -TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSCE--EECCTTTTSCC------
T ss_pred -CeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCce--eEcCCCCCchhh-----
Confidence 99999999999999999999999 999999999999999999999999999999999874 899999 99999
Q ss_pred cCCCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcC-CCCcccCcccCCCCccCchhhhhcccc
Q 011846 397 QKGQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETG-KMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 397 IaGk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G-~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+|+|+. ++|++||+||.+++++| .+|+||||.+ .|++|+++||.
T Consensus 280 iAGk~-iANP~A~IlS~ammL~~lg~~-------~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~------~T~e~~daI~~ 344 (349)
T 3blx_A 280 IKGQN-VANPTAMILSSTLMLNHLGLN-------EYATRISKAVHETIAEGKHTTRDIGGSS------STTDFTNEIIN 344 (349)
T ss_dssp -CCTT-CSCCHHHHHHHHHHHHHHTCC-------HHHHHHHHHHHHHHHSSSSCBGGGTCCB------CHHHHHHHHHH
T ss_pred hcCCC-CCCcHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHcCCccCCCcCCCC------CHHHHHHHHHH
Confidence 99999 999999999999999999954 59999999999999999 6999999854 58999999874
No 24
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.9e-101 Score=805.96 Aligned_cols=344 Identities=22% Similarity=0.211 Sum_probs=305.1
Q ss_pred ceeec--ccEEEEcCCCcHHHHHHHHHHHHhcC-------CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEe
Q 011846 81 RVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKC 151 (476)
Q Consensus 81 ~~~~~--~~I~vi~GDGIGpEI~~a~~~~l~~~-------~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkG 151 (476)
++.|. .+|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++||+|||
T Consensus 29 ~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkG 108 (435)
T 1tyo_A 29 SLRVPDNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKG 108 (435)
T ss_dssp EEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEEC
T ss_pred eecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEEC
Confidence 44443 36999999999999999999888543 3899999999999999999999999999999999999999
Q ss_pred cccCCCCccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceE
Q 011846 152 ATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (476)
Q Consensus 152 avgtP~~~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iD 231 (476)
|++||.+ ++|+|+|++|||+||||||+||| +.+ |+++|+ +.++++|
T Consensus 109 av~tP~~---------~~~~s~~l~LRk~LdlyanlRPv--~~~-----gv~spl------------------k~~~~vD 154 (435)
T 1tyo_A 109 PLETPVG---------TGYRSLNVAIRQALDLYANIRPV--RYY-----GQPAPH------------------KYADRVD 154 (435)
T ss_dssp CCCCCTT---------SCTTHHHHHHHHHHTCCEEEEEE--ECC-----SCCCSB------------------TTGGGCE
T ss_pred CccCCCc---------ccccChhHHHHHHcCCEEEeEEE--Eec-----CCCCCC------------------CCcCCCc
Confidence 9999963 35789999999999999999998 443 445552 2224678
Q ss_pred EEEecCCCCCCeeeeeeeec--------------------CCceE-EEEEecHHHHHHHHHHHHHHHHcC-CCCEEEEEC
Q 011846 232 MVFDPEDGTGPVELDVYNFK--------------------GPGIA-LAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTK 289 (476)
Q Consensus 232 lvivREnteG~~Y~g~~~~~--------------------~~~va-~~~~~Tr~~~eRIar~AFe~A~~r-~kkVt~v~K 289 (476)
+||+|||||| +|+|.++.. .++++ .+++||+++++||+|+||+||++| +++||+|||
T Consensus 155 ivIvREnTeg-~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~K 233 (435)
T 1tyo_A 155 MVIFRENTED-VYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHK 233 (435)
T ss_dssp EEEEEECSSS-GGGCCEECTTSHHHHHHHHHHHHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEEEecCCCC-eecccccccCCccccceeccchhhccccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 8888888888 888776532 24677 669999999999999999999998 678999999
Q ss_pred CCcccccchHHHHHHHHHHHhhhcc-cc-------------ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchh
Q 011846 290 NTILKKYDGRFKDIFQQVYEERWRQ-KF-------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQ 354 (476)
Q Consensus 290 aNVlk~tdglf~~i~~eva~~eYp~-~f-------------~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDIL 354 (476)
+||||.|||+|+++|+|||+++||+ .| ++.+|+++|+|||+|+||||++|++| ||||+|||||||
T Consensus 234 aNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIL 313 (435)
T 1tyo_A 234 GNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYI 313 (435)
T ss_dssp TTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHH
Confidence 9999999999999999999559996 23 33459999999999999999999999 999999999999
Q ss_pred hhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHHHHHHH-HHhcccccchhHHHHH
Q 011846 355 SDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGL-EHRAKLDKNERLLHFV 433 (476)
Q Consensus 355 SDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~amML-~hlg~~d~~~~l~~~A 433 (476)
||++|+++|||||+||+|||++++ ||||+|||||| ||||| +|||+|+|||++||| +||| +.++|
T Consensus 314 SD~aA~l~GslGlapSanig~~~a--~fEpvHGSAPd-----iAGk~-iANP~A~IlS~amML~~hlg-------~~~~A 378 (435)
T 1tyo_A 314 SDAASALVGGIGMAAGMNMGDGIA--VAEPVHGTAPK-----YAGKD-LINPSAEILSASLLIGEFMG-------WREVK 378 (435)
T ss_dssp HHHHHHHTTCGGGCEEEEECSSCE--EEEESSCCCGG-----GTTSS-CSCCHHHHHHHHHHHHTTSC-------CHHHH
T ss_pred HHHHHhhcCCcccCceeeECCCce--eeecCCCChHH-----hcCCC-CcCcHHHHHHHHHHHHHHcC-------CHHHH
Confidence 999999999999999999998875 89999999999 99999 999999999999999 9999 45699
Q ss_pred HHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 434 QKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 434 ~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
++|++||.+++++|.+|+||||..+|.+.+.|++|+++||.
T Consensus 379 ~~Ie~Av~~~l~~g~~T~Dlgg~~~g~~~~~T~e~~daV~~ 419 (435)
T 1tyo_A 379 SIVEYAIRKAVQSKKVTQDLARHMPGVQPLRTSEYTETLIA 419 (435)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHTTSTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCccccccCCCCCCcCHHHHHHHHHH
Confidence 99999999999999999999998777777899999999974
No 25
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=9.3e-102 Score=794.23 Aligned_cols=340 Identities=19% Similarity=0.158 Sum_probs=298.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
.+|++||||||||||+++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|...++
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 48999999999999999999988665 89999999999999999999999999999999999999999999963222
Q ss_pred cccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCC-CceEEEEecCCCC
Q 011846 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGP-GKLKMVFDPEDGT 240 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~-~~iDlvivREnte 240 (476)
+. . .++++++|++|||+||||+|+||| |.+|++.+ .+|+ + -+.+ +++|+||||||||
T Consensus 93 ~~-~-~r~~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~--~spl-----------k-----~~~~~~~vDivIvREnte 150 (366)
T 1vlc_A 93 PP-E-KRPEIGGLLALRKMLNLYANIRPI--KVYRSLVH--VSPL-----------K-----EKVIGSGVDLVTVRELSY 150 (366)
T ss_dssp CS-T-TSHHHHTHHHHHHHTTCCEEEEEE--ECCGGGGG--GSSS-----------C-----HHHHTTCCEEEEEEECSS
T ss_pred Cc-c-cCcccchhHHHHHHhCCEEEEEEc--cccCCCCC--cCCC-----------c-----ccccCCCceEEEEEeCCC
Confidence 21 1 112234589999999999999997 66654431 0452 0 0001 4799999999999
Q ss_pred CCeeeeeeeecCCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccC
Q 011846 241 GPVELDVYNFKGPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (476)
Q Consensus 241 G~~Y~g~~~~~~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~ 319 (476)
| +|+|.++..+++++ ++++||+++++||+|+||+||++|++|||+|||+|||| +||||+++|+||| ++||
T Consensus 151 G-~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~eyp------ 221 (366)
T 1vlc_A 151 G-VYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-REYP------ 221 (366)
T ss_dssp G-GGTEEEEEECSSCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTCT------
T ss_pred C-eecCCccccCCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HHCC------
Confidence 9 99999876566777 67999999999999999999999999999999999999 9999999999999 5999
Q ss_pred CeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccC
Q 011846 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 320 ~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~Ia 398 (476)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+||| +. .||||+|||||| ||
T Consensus 222 dV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~~--alfEpvHGSAPd-----IA 293 (366)
T 1vlc_A 222 DVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DK--NLYEPAGGSAPD-----IA 293 (366)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SS--EEEEESSCCCTT-----TT
T ss_pred CceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-Cc--eeeecCCCchhh-----cC
Confidence 99999999999999999999999 99999999999999999999999999999999 65 499999999999 99
Q ss_pred CCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +|||+|+|||++|||+| || +.++|++|++||.+++++|.+|+|||. .|.+...|++|+++||.
T Consensus 294 Gk~-iANP~A~IlS~ammL~~slg-------~~~~A~~Ie~Av~~~l~~g~~T~Dlg~--~gg~~~~T~e~~daV~~ 360 (366)
T 1vlc_A 294 GKN-IANPIAQILSLAMMLEHSFG-------MVEEARKIERAVELVIEEGYRTRDIAE--DPEKAVSTSQMGDLICK 360 (366)
T ss_dssp TTT-CSCCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTCCCGGGCS--SGGGCCCHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHHHHcCCccccccc--CCCCCcCHHHHHHHHHH
Confidence 999 99999999999999999 98 467999999999999999999999982 11121368999999874
No 26
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-101 Score=800.87 Aligned_cols=342 Identities=17% Similarity=0.158 Sum_probs=299.2
Q ss_pred eecccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCC
Q 011846 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 83 ~~~~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~ 158 (476)
+|.++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|..
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 36689999999999999999999888543 79999999999999999999999999999999999999999999973
Q ss_pred ccccccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCC
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREn 238 (476)
...+. ...+ .+.|++|||+||||+|+||| |.+|++.. .+|+ + -..++++|+||||||
T Consensus 120 ~~~~~--~~~p-~~~ll~LRk~ldLyaNlRP~--k~~~gl~~--~spl-----------k-----~~~~~~vD~vIvREn 176 (405)
T 3r8w_A 120 DNNEK--HLRP-EKGLLQIRAALKVFANLRPA--TVLPQLVD--ASTL-----------K-----REVAEGVDLMVVREL 176 (405)
T ss_dssp TTSCG--GGSH-HHHHHHHHHHHTCCEEEEEE--ECCGGGGG--GSSB-----------C-----HHHHTTCEEEEEEEC
T ss_pred cCCcc--ccCc-ccchHHHHHHhCCeEEEEEe--eccCCccc--cCcc-----------c-----cccCCCceEEEEeeC
Confidence 21221 1122 34589999999999999997 66654321 3563 0 001268999999999
Q ss_pred CCCCeeeeeeeec-----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhh
Q 011846 239 GTGPVELDVYNFK-----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (476)
Q Consensus 239 teG~~Y~g~~~~~-----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eY 312 (476)
||| +|+|.++.. +++++ ++++||++++|||+|+||+||++|++|||+|||+|||+ ++|||+++|+||+ ++|
T Consensus 177 TeG-~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk-~sglf~~~~~eva-~eY 253 (405)
T 3r8w_A 177 TGG-IYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLE-ASILWRKRVTALA-SEY 253 (405)
T ss_dssp SCS-TTTCSSCEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGS
T ss_pred CCC-eecCCccccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhc-cccHHHHHHHHHH-hHC
Confidence 999 999987642 23577 67999999999999999999999999999999999999 4599999999998 699
Q ss_pred ccccccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccc
Q 011846 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTR 391 (476)
Q Consensus 313 p~~f~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd 391 (476)
| ||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ..||||+||||||
T Consensus 254 P------dV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGSAPD 326 (405)
T 3r8w_A 254 P------DVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGSAPD 326 (405)
T ss_dssp T------TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCCCGG
T ss_pred C------CCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCChhh
Confidence 9 99999999999999999999999 99999999999999999999999999999999876 3589999999999
Q ss_pred ccccccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCccc--CcccCCCCccCchhh
Q 011846 392 HFRLHQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDL--AILVHGPKYILPSPY 468 (476)
Q Consensus 392 ~~~~~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DL--gG~~~~~~~~~~~~~ 468 (476)
||||| +|||+|+|||++|||+| +|+. ++|++||+||.+++++|.+|+|| ||. +.++|++|
T Consensus 327 -----IAGk~-iANP~A~IlS~amML~~slg~~-------~~A~~Ie~AV~~~l~~G~~T~Dl~~gG~----~~~~T~e~ 389 (405)
T 3r8w_A 327 -----IAGQD-KANPLATILSAAMLLKYGLGEE-------KAAKRIEDAVLVALNNGFRTGDIYSAGT----KLVGCKEM 389 (405)
T ss_dssp -----GTTTT-CCCCHHHHHHHHHHHHHTTCCT-------THHHHHHHHHHHHHHTTEECGGGCCTTS----EECCHHHH
T ss_pred -----hCCCC-CCCcHHHHHHHHHHHHhhCccH-------HHHHHHHHHHHHHHHcCCcCccccCCCC----cccCHHHH
Confidence 99999 99999999999999999 9854 49999999999999999999999 654 45678999
Q ss_pred hhcccc
Q 011846 469 LLHVIT 474 (476)
Q Consensus 469 ~~~~i~ 474 (476)
+++||.
T Consensus 390 ~~aV~~ 395 (405)
T 3r8w_A 390 GEEVLK 395 (405)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 27
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=2.8e-101 Score=790.34 Aligned_cols=340 Identities=21% Similarity=0.226 Sum_probs=297.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcC----CCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~----~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~ 161 (476)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|....+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 58999999999999999999888654 79999999999999999999999999999999999999999999973323
Q ss_pred cccccccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCC
Q 011846 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (476)
Q Consensus 162 ~~~~~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG 241 (476)
++ ..+++++ |++|||+||||+|+||| +.+|++.+ .+|+ +. ..++++|+|||||||||
T Consensus 82 ~~--~~~~e~~-ll~lRk~ldlyanvRP~--~~~pgl~~--~spl-----------k~-----~~~~~vDivIvREnteg 138 (358)
T 1a05_A 82 PP--AKRPEQG-LLRLRKGLDLYANLRPA--QIFPQLLD--ASPL-----------RP-----ELVRDVDILVVRELTGD 138 (358)
T ss_dssp CG--GGSHHHH-HHHHHHHHTCCEEEEEE--ECCTTSGG--GCSB-----------CH-----HHHTTCEEEEEEECSSS
T ss_pred Cc--cccchhh-HHHHHHHcCCEEEEEEE--EecCCccC--CCCC-----------cc-----ccCCCceEEEEEecCCC
Confidence 31 1123455 89999999999999997 66654421 2452 00 01257899999999999
Q ss_pred Ceeeeeeee--c--CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhcccc
Q 011846 242 PVELDVYNF--K--GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (476)
Q Consensus 242 ~~Y~g~~~~--~--~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f 316 (476)
+|+|.++. . +.+++ ++++||++++|||+|+||+||++|++|||+|||+|||| ++|||+++|+||| ++||
T Consensus 139 -~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~eyp--- 212 (358)
T 1a05_A 139 -IYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDYP--- 212 (358)
T ss_dssp -TTTCSSCEEEEETTEEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGCT---
T ss_pred -cccCCcCccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHCC---
Confidence 99987432 1 23567 67999999999999999999999989999999999999 9999999999999 7999
Q ss_pred ccCCeEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeecccccccccccc
Q 011846 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRL 395 (476)
Q Consensus 317 ~~~~I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~ 395 (476)
+|+++|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+||+||| ++ ..||||+||||||
T Consensus 213 ---dI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd---- 283 (358)
T 1a05_A 213 ---DVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD---- 283 (358)
T ss_dssp ---TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG----
T ss_pred ---CceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH----
Confidence 99999999999999999999999 99999999999999999999999999999999 44 3699999999999
Q ss_pred ccCCCCCccCcHhHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 396 HQKGQETSTNSIASIFAWTRGLEH-RAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 396 ~IaGk~~iANPiA~IlS~amML~h-lg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||||| +|||+|+|||++|||+| || +.++|++|++||.+++++|.+|+||+|. |.+...|++|+++||.
T Consensus 284 -iAGk~-iANP~A~IlS~ammL~~~lg-------~~~~A~~Ie~Av~~~l~~g~~T~Dl~g~--g~~~~~T~e~~daV~~ 352 (358)
T 1a05_A 284 -IAGQD-KANPLATILSVAMMLRHSLN-------AEPWAQRVEAAVQRVLDQGLRTADIAAP--GTPVIGTKAMGAAVVN 352 (358)
T ss_dssp -GTTTT-CSCCHHHHHHHHHHHHHTSS-------CHHHHHHHHHHHHHHHHTTCCCGGGCCT--TSCCCCHHHHHHHHHH
T ss_pred -hcCCC-ccCcHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHcCCcCcccccC--CCCCcCHHHHHHHHHH
Confidence 99999 99999999999999999 98 5679999999999999999999999762 2233479999999974
No 28
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=4.6e-100 Score=775.55 Aligned_cols=327 Identities=18% Similarity=0.165 Sum_probs=293.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCcHHHHHHHHhcCeEEEecccCCCCccccccc
Q 011846 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (476)
Q Consensus 86 ~~I~vi~GDGIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp~etleaik~~daiLkGavgtP~~~~~~~~~ 165 (476)
++|++||||||||||+++++++|.+...+|+|+++++|.+++++||+++|++++++|+++|++||||+++|+ +++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~---~~~-- 76 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPS---VPS-- 76 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTT---SCT--
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCC---CCC--
Confidence 589999999999999999999886654469999999999999999999999999999999999999999995 222
Q ss_pred cccCCCCcchhHhhhcCcEEEeeeeccccCCCCCCCCCCceEeeecccCCccccccccccCCCceEEEEecCCCCCCeee
Q 011846 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (476)
Q Consensus 166 ~~~~~~s~n~~LRk~LdlyanvRPi~~k~~p~~~pg~~~pivi~Re~ted~Y~~~e~~~~~~~~iDlvivREnteG~~Y~ 245 (476)
..+|+|+|++|||+||||+|+||| |++| ++++|+ +. .++ +|+||||||||| +|+
T Consensus 77 -~~~~~s~~l~lR~~ldlyan~RP~--~~~p----g~~s~l-----------~~------~~~-~DivivREnteg-~Y~ 130 (337)
T 1w0d_A 77 -GVLERGLLLRLRFELDHHINLRPA--RLYP----GVASPL-----------SG------NPG-IDFVVVREGTEG-PYT 130 (337)
T ss_dssp -THHHHHTHHHHHHHTTCCEEEEEE--ECCT----TCCCSB-----------TT------CCC-CEEEEEEECSCS-GGG
T ss_pred -cccccchHHHHHHHcCCEEEEEEe--ecCC----CCCCcc-----------cC------CCC-CcEEEEecCCCC-eec
Confidence 114678999999999999999998 6665 555662 11 134 999999999999 999
Q ss_pred eeeeec----CCceE-EEEEecHHHHHHHHHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCC
Q 011846 246 DVYNFK----GPGIA-LAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (476)
Q Consensus 246 g~~~~~----~~~va-~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~ 320 (476)
|.++.. .++++ ++++||++++|||+|+||+||++|++|||+|||+||||.|||||+++|+||| ++|| +
T Consensus 131 g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~eyp------~ 203 (337)
T 1w0d_A 131 GNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECYP------D 203 (337)
T ss_dssp CCEEEESTTSTTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTCT------T
T ss_pred CCcceecCCCCCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHCC------c
Confidence 987652 34678 6799999999999999999999999999999999999999999999999999 6999 9
Q ss_pred eEEeeEeHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCc-eeeeeccccccccccccccC
Q 011846 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGK-TLEAEAAHGTVTRHFRLHQK 398 (476)
Q Consensus 321 I~~e~~lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a-~~~fEp~HGSAPd~~~~~Ia 398 (476)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++. ..||||+|||||| ||
T Consensus 204 i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-----iA 278 (337)
T 1w0d_A 204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IA 278 (337)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GT
T ss_pred eEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-----hC
Confidence 9999999999999999999999 999999999999999999999999999999998652 4699999999999 99
Q ss_pred CCCCccCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCccCchhhhhcccc
Q 011846 399 GQETSTNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGKMTKDLAILVHGPKYILPSPYLLHVIT 474 (476)
Q Consensus 399 Gk~~iANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~~T~DLgG~~~~~~~~~~~~~~~~~i~ 474 (476)
||| +|||+|+|||++|||+||| +.++|++|++||.+++++| ||. -..|++|+++||.
T Consensus 279 Gk~-iANP~A~IlS~ammL~~lg-------~~~~A~~Ie~Av~~~l~~g------gg~-----~~~T~e~~~av~~ 335 (337)
T 1w0d_A 279 GQG-IADPTAAIMSVALLLSHLG-------EHDAAARVDRAVEAHLATR------GSE-----RLATSDVGERIAA 335 (337)
T ss_dssp TSS-CSCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHC------TTC-----CCCHHHHHHHHHH
T ss_pred CCC-CcCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHcC------CCC-----CcCHHHHHHHHHh
Confidence 999 9999999999999999998 4569999999999999998 552 1368999999974
No 29
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=97.41 E-value=0.011 Score=63.55 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=135.2
Q ss_pred CCceEEEEEecHHHHHHHHHHHHHHHHcCCCCE-EEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HH
Q 011846 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWPL-YLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-ID 329 (476)
Q Consensus 252 ~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkV-t~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l-VD 329 (476)
.++++..+..-+.-++-.++.|.+.||..+.+. .-.|+.- ..=.++...| +.|=......|+.+.-+- ++
T Consensus 448 ~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~R------aHDa~lI~kV--~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 448 ANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPER------AHDRNLASLV--EKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp TTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTC------HHHHHHHHHH--HHHHTTSCCTTCCEEEECHHH
T ss_pred CCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCC------ccHHHHHHHH--HHHHHhcCCCCCceEeeCHHH
Confidence 467776666778899999999999999988664 3334322 1224555666 256555556677777664 55
Q ss_pred HHHHHH--HhCCCceEEEecCCccchhhhhHhhh--cCCcccccceecCCCCceeeeec-cccccccccccccC-CCCCc
Q 011846 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG--FGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQK-GQETS 403 (476)
Q Consensus 330 a~a~~L--V~~P~~FViVt~NlfGDILSDlaA~l--~GslGlapSanig~~~a~~~fEp-~HGSAPd~~~~~Ia-Gk~~i 403 (476)
++-.-| +++-..-+-||.|..=|.|+||.--| --|.=|..=+=+=..| ++||. +-||||+|..|.+. |-= +
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhL-R 596 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGG--GLFETGAGGSAPKHVQQVQEENHL-R 596 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSC--EEEECCSSCCCHHHHHHHHHHSCC-C
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCcc-c
Confidence 544333 55555569999999999999999854 2222222111111233 38998 57899999887542 222 6
Q ss_pred cCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC-CCcccCc
Q 011846 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAI 455 (476)
Q Consensus 404 ANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLgG 455 (476)
=+.+|-+|+.+--|+|++...+|..-.-.|+.|.+|+.+.|++++ -.+-.|.
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 597 WDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 789999999999999999999999999999999999999999876 3334443
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=97.40 E-value=0.011 Score=63.61 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=135.3
Q ss_pred CCceEEEEEecHHHHHHHHHHHHHHHHcCCCCE-EEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe-HH
Q 011846 252 GPGIALAMYNVDESIRAFAESSMSLAFSKKWPL-YLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL-ID 329 (476)
Q Consensus 252 ~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkV-t~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l-VD 329 (476)
.++++..+..-+.-++-.++.|.+.||..+.+. .-.|+.- ..=.++...| +.|=......|+.+.-+- ++
T Consensus 452 ~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~R------aHDa~lI~kV--~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 452 AGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPAR------AHDAQVIAKV--ERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp TTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTS------HHHHHHHHHH--HHHHTTSCCTTCCEEEECHHH
T ss_pred CCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCC------ccHHHHHHHH--HHHHHhcCCCCCceEeeCHHH
Confidence 467776666778899999999999999988664 3334322 1224555666 256555556677777664 55
Q ss_pred HHHHHH--HhCCCceEEEecCCccchhhhhHhhh--cCCcccccceecCCCCceeeeec-cccccccccccccC-CCCCc
Q 011846 330 DMVAYA--IKSEGGYVWACKNYDGDVQSDLLAQG--FGSLGLMTSVLLSSDGKTLEAEA-AHGTVTRHFRLHQK-GQETS 403 (476)
Q Consensus 330 a~a~~L--V~~P~~FViVt~NlfGDILSDlaA~l--~GslGlapSanig~~~a~~~fEp-~HGSAPd~~~~~Ia-Gk~~i 403 (476)
++-.-| +++-..-+-||.|..=|.|+||.--| --|.=|..=+=+=..| ++||. +-||||+|..|.+. |-= +
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GG--GLfETGAGGSAPKHVqQ~~eEnhL-R 600 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGG--GLFETGAGGSAPKHVQQFLEEGYL-R 600 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSC--EEEESCSSCCCHHHHHHHHHHSCC-C
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCC--ccccCCCCcCchHHHHHHHHcCcc-c
Confidence 544333 55555569999999999999999854 2222222111111233 38998 57899999887542 222 6
Q ss_pred cCcHhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHcCC-CCcccCc
Q 011846 404 TNSIASIFAWTRGLEHRAKLDKNERLLHFVQKLEAACIEAVETGK-MTKDLAI 455 (476)
Q Consensus 404 ANPiA~IlS~amML~hlg~~d~~~~l~~~A~~Ie~AV~~vl~~G~-~T~DLgG 455 (476)
=+.+|-+|+.+--|+|++...+|..-.-.|+.|.+|+.+.|++++ -.+-.|.
T Consensus 601 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 601 WDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 789999999999999999999999999999999999999999876 3334443
No 31
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=92.07 E-value=0.095 Score=54.54 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=14.6
Q ss_pred ceEEEEecCCCCCCeeeeeeeecC
Q 011846 229 KLKMVFDPEDGTGPVELDVYNFKG 252 (476)
Q Consensus 229 ~iDlvivREnteG~~Y~g~~~~~~ 252 (476)
++|+||+|||||| +|+|.++...
T Consensus 125 ~~DivIvREnteg-~Y~g~e~~~~ 147 (402)
T 4aoy_A 125 KKPISIARHAYGD-VYKNVEYYVP 147 (402)
T ss_dssp CBCCEEEEC-------CCEEEEEC
T ss_pred CCCEEEEEeccCC-eecCceeecc
Confidence 6999999999999 9999988643
No 32
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=91.94 E-value=0.049 Score=55.43 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=63.4
Q ss_pred CceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHH-HHHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIR-AFAESSMS 275 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~e-RIar~AFe 275 (476)
.+++|+||||||+|.|.|+.....-.+++ ++.|+.++- + -..-| . ...+..+ +-+--+.+. .+-+.+-|
T Consensus 110 ~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eR-i--ar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~e 186 (336)
T 1wpw_A 110 VDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASER-I--AKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRS 186 (336)
T ss_dssp CEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHH-H--HHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHH-H--HHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHH
Confidence 78999999999999998765322123454 455543321 0 00001 0 1223322 333333344 44455555
Q ss_pred HHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCCc
Q 011846 276 LAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEGG 341 (476)
Q Consensus 276 ~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~~ 341 (476)
.|.+ .|.. .+-+-...+..+- .-|.+| ||.+-.-+ +-++++.++=+.+-
T Consensus 187 va~~---~I~~---------~~~~vD~~~~~lv--~~P~~F---DVivt~NlfGDIlSD~aa~l~GslGl 239 (336)
T 1wpw_A 187 VLKG---KVEY---------SEMYVDAAAANLV--RNPQMF---DVIVTENVYGDILSDEASQIAGSLGI 239 (336)
T ss_dssp HHTT---TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHh---Ccee---------EEEeHHHHHHHHh--hCcccc---eEEEEcCcchHHHHHHHHHhcCCccc
Confidence 6654 3333 3334455566665 358888 88776554 55677777755543
No 33
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=90.64 E-value=0.11 Score=52.89 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=60.5
Q ss_pred CceEeeecccCCcccccccccc-C-CC--ceEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHH-HHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIK-G-PG--KLKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIR-AFAE 271 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~-~-~~--~iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~e-RIar 271 (476)
.++||+||||||+|.|.|+... + ++ .+++ ++.|+.++- + -..-| . ...+... +-+--+.+. .+-+
T Consensus 116 ~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eR-i--ar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~ 192 (337)
T 1w0d_A 116 IDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRR-V--VADAFERARRRRKHLTLVHKTNVLTFAGGLWLR 192 (337)
T ss_dssp CEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHH
T ss_pred CcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHH-H--HHHHHHHHHHcCCeEEEEECCccchhhhHHHHH
Confidence 7999999999999999986532 1 11 2232 233332221 0 00001 0 2224432 334334344 4444
Q ss_pred HHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCC
Q 011846 272 SSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEG 340 (476)
Q Consensus 272 ~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~ 340 (476)
.+-|.|.+-. .|.. .+-+-...+..+- .-|.+| ||.+-.-+ +-++++.|+=+.+
T Consensus 193 ~~~eva~eyp-~i~~---------~~~~vD~~~mqlv--~~P~~F---DVivt~NlfGDIlSD~aa~l~GslG 250 (337)
T 1w0d_A 193 TVDEVGECYP-DVEV---------AYQHVDAATIHMI--TDPGRF---DVIVTDNLFGDIITDLAAAVCGGIG 250 (337)
T ss_dssp HHHHHHTTCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHCC-ceEE---------EEEEHHHHHHHHh--hCcccc---cEEEECcchhHHHHHHHhhhcCCcc
Confidence 5555664222 2443 2334445555665 358888 77776442 4456666664443
No 34
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=89.87 E-value=0.2 Score=51.18 Aligned_cols=121 Identities=9% Similarity=0.036 Sum_probs=62.3
Q ss_pred CceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----cC--CceEEE-EEecHHHHH-HHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----KG--PGIALA-MYNVDESIR-AFAESSM 274 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~~--~~va~~-~~~Tr~~~e-RIar~AF 274 (476)
.++||+||||||+|.|.|+.....-.+++ ++.|+..+- + -..-| .. ..+..+ +-+--+.+. .+-+.+-
T Consensus 123 vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eR-i--ar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~ 199 (349)
T 3blx_A 123 IDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTER-I--ARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIIT 199 (349)
T ss_dssp CEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHH
T ss_pred cCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHH-H--HHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHH
Confidence 68999999999999998864321113333 344443221 0 00001 11 224332 333333343 4555555
Q ss_pred HHH-HcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeE----eHHHHHHHHHhCCCce
Q 011846 275 SLA-FSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR----LIDDMVAYAIKSEGGY 342 (476)
Q Consensus 275 e~A-~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~----lVDa~a~~LV~~P~~F 342 (476)
|.| .+-. .|.. .+-+-...+..+- .-|.+| ||.+-.- ++-++++.++=+.+-.
T Consensus 200 eva~~eyp-~i~~---------~~~~vD~~~~qlv--~~P~~F---DVivt~NlfGDIlSD~aa~l~GslGl~ 257 (349)
T 3blx_A 200 EIGQKEYP-DIDV---------SSIIVDNASMQAV--AKPHQF---DVLVTPSMYGTILGNIGAALIGGPGLV 257 (349)
T ss_dssp HHHHHHCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHTCGGGC
T ss_pred HHHHhhCC-CeeE---------EEeeHHHHHHHHh--hCcccc---cEEEECCcchHHHHHHHHhhcCCcccc
Confidence 666 3322 2433 2334445555555 348888 7777654 2456677777555443
No 35
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=89.78 E-value=0.13 Score=53.76 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.1
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
..++||+||||||+|.|.|+.
T Consensus 137 ~vDivIvREnteg~Y~G~e~~ 157 (423)
T 1hqs_A 137 DTDMVIFRENTEDIYAGIEYA 157 (423)
T ss_dssp GCEEEEEEECSCGGGGCCEEC
T ss_pred CCcEEEEecCCCCeecccccc
Confidence 579999999999999999875
No 36
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=89.49 E-value=0.18 Score=51.61 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=61.4
Q ss_pred CceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----cC--CceEEE-EEecHHHHH-HHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----KG--PGIALA-MYNVDESIR-AFAESSM 274 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~~--~~va~~-~~~Tr~~~e-RIar~AF 274 (476)
.++||+||||||+|.|.|+.....-.+++ ++.|+..+- + -..-| .. ..+..+ +-+--+.+. .+-+.+-
T Consensus 129 vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eR-i--ar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~ 205 (354)
T 3blx_B 129 VDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASER-V--IRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAK 205 (354)
T ss_dssp CEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHH
T ss_pred ccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHH-H--HHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 78999999999999998864322123343 344433221 0 00001 11 224332 333333344 4555555
Q ss_pred HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCC--eEEeeEe----HHHHHHHH-HhCCC
Q 011846 275 SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS--IWYEHRL----IDDMVAYA-IKSEG 340 (476)
Q Consensus 275 e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~--I~~e~~l----VDa~a~~L-V~~P~ 340 (476)
|.|.+-. .|.. .+-+-...+..+- .-|.+| | |.+-.-+ +-++++.+ +=+.+
T Consensus 206 eva~eyp-dI~~---------~~~~vD~~~m~lv--~~P~~F---D~~Vivt~NlfGDIlSD~aa~l~~GslG 263 (354)
T 3blx_B 206 ELSKEYP-DLTL---------ETELIDNSVLKVV--TNPSAY---TDAVSVCPNLYGDILSDLNSGLSAGSLG 263 (354)
T ss_dssp HHGGGCT-TSEE---------EEEEHHHHHHHHH--HCGGGG---TTEEEEECHHHHHHHHHHHHHHHTSSGG
T ss_pred HHHHHCC-CceE---------EEEEHHHHHHHHh--hChhhC---CceEEEecCcccchhHHHHHhhccCCcc
Confidence 6665322 2333 2334445555555 348888 7 7776543 45666777 44333
No 37
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=89.19 E-value=0.16 Score=53.32 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=19.0
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
+.++||+||||||+|.|.|+.
T Consensus 146 ~vDivIvREnTeg~Y~G~e~~ 166 (429)
T 2d4v_A 146 KVDMVIFRENSEDIYAGIEWP 166 (429)
T ss_dssp GCEEEEEEECSCGGGGCCEEC
T ss_pred CCCEEEEEeCCCCeecCcccc
Confidence 469999999999999999875
No 38
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=89.11 E-value=0.17 Score=52.80 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=18.9
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
+.++||+||||||+|.|.|+.
T Consensus 142 ~vDivIvREnTeg~Y~G~e~~ 162 (412)
T 2iv0_A 142 KVNFVIFRENTEDVYAGIEWP 162 (412)
T ss_dssp GCEEEEEEECSSSGGGCCEEC
T ss_pred CCCEEEEecCCCCEeCCcccc
Confidence 368999999999999999875
No 39
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=89.06 E-value=0.17 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.9
Q ss_pred CCceEeeecccCCcccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~ 223 (476)
+.++||+||||||+|+|.|+.
T Consensus 142 ~vDivIvREnteg~Y~g~e~~ 162 (409)
T 2e0c_A 142 KVDMIIFRENTDDLYRGIEYP 162 (409)
T ss_dssp TCEEEEEEECSSGGGGCCEEC
T ss_pred CCcEEEEEcCCCCEeCCcccc
Confidence 469999999999999999874
No 40
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=88.15 E-value=0.27 Score=49.99 Aligned_cols=133 Identities=12% Similarity=-0.011 Sum_probs=72.6
Q ss_pred EecHHHHHHHHHHHHHHHHcCC--CCEEEEECCCcccccchHH-HH-------HHHHHHHhhhccccccCCeEEe-eEeH
Q 011846 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRF-KD-------IFQQVYEERWRQKFEEHSIWYE-HRLI 328 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r~--kkVt~v~KaNVlk~tdglf-~~-------i~~eva~~eYp~~f~~~~I~~e-~~lV 328 (476)
.+|.+.+.+.++...+.-++-+ ++=..|-==|==.--+|+| +| +.++.. + .++.+. ..=-
T Consensus 196 ~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~GLNPHaGE~G~~G~EE~~iI~Pai~~l~-~--------~gi~v~GP~pa 266 (349)
T 4aty_A 196 RLDQRHVERAARAAVQALQLMGIAHPVVGLMGINPHAGEGGLFGRDDIDITEPVARKLR-D--------DGMTVIGPQGA 266 (349)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTC-CCCCEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHH-H--------C-CCEEEEECH
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCccccccchHHHHHHHHHHHHH-H--------CCCeEeCCCch
Confidence 4678888877776655544433 3322222223222234555 12 222222 1 155444 4455
Q ss_pred HHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcH
Q 011846 329 DDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSI 407 (476)
Q Consensus 329 Da~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPi 407 (476)
|.+- .+.+| ++|+ ||=| .+---+--++.--++|+.-.--..---|-||||-| ||||| +|||.
T Consensus 267 Dt~F-----~~~~~D~vla--MYHD----Qgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~d-----iagkg-~a~~~ 329 (349)
T 4aty_A 267 DLLL-----TNPDIDVFVA--MYHD----QGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFD-----IAGTL-LADPA 329 (349)
T ss_dssp HHHT-----TCTTCSEEEE--SSHH----HHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTT-----STTTT-CCCCH
T ss_pred hhhh-----ccCCCCEEEE--cccc----cchHHHHhcccCCcEEEecCCCeeEeCCCCChhhh-----hccCC-CCChH
Confidence 6543 24678 6666 4433 44333334555556776422100122589999999 99999 99999
Q ss_pred hHHHHHHHHHH
Q 011846 408 ASIFAWTRGLE 418 (476)
Q Consensus 408 A~IlS~amML~ 418 (476)
+++-|.-+...
T Consensus 330 s~~~Ai~~a~~ 340 (349)
T 4aty_A 330 PLLGAIRLVTT 340 (349)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776554
No 41
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=87.85 E-value=0.31 Score=49.43 Aligned_cols=138 Identities=15% Similarity=0.019 Sum_probs=83.4
Q ss_pred EecHHHHHHHHHHHHHHHHcC-C--CCEEEEECCCcccccchHHH-HHHHHHH--HhhhccccccCCeEEe-eEeHHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSK-K--WPLYLSTKNTILKKYDGRFK-DIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMV 332 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r-~--kkVt~v~KaNVlk~tdglf~-~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa~a 332 (476)
.+|.+.+.+.++...+--+++ + ++-..|-==|==.--+|+|= |-.+.+. -++.. +.+|.+. ..=-|.+-
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~r----~~Gi~~~GP~paDT~F 249 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLR----GEGLDLIGPLPADTLF 249 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHH----TTTCEEEEEECHHHHT
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhhc
Confidence 378899998888887744442 3 34344443443232346652 1111110 00111 1267663 56677766
Q ss_pred HHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCC---CceeeeeccccccccccccccCCCCCccCcHh
Q 011846 333 AYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD---GKTLEAEAAHGTVTRHFRLHQKGQETSTNSIA 408 (476)
Q Consensus 333 ~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~---~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA 408 (476)
.+-.+ ++| ++|| ||= |.+-.-+--+|+--++|+.-. -.+ -|-||||-| ||||| +|||.+
T Consensus 250 ~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvTlGLP~iRT---SvDHGTAfD-----IAGkG-~A~~~S 312 (328)
T 1yxo_A 250 TPKHL--EHCDAVLA--MYH----DQGLPVLKYKGFGAAVNVTLGLPIIRT---SVDHGTALD-----LAGSG-RIDSGS 312 (328)
T ss_dssp SHHHH--TTCSEEEE--SSH----HHHHHHHHHHHTTSCEEEEESSSSCEE---EECSCCCGG-----GTTTC-CCCCHH
T ss_pred ccccc--cCCCEEEE--ccc----ccccHhHhhcccCcceEEecCCCEEEe---cCCCCcccc-----ccCCC-CCChHH
Confidence 55444 577 5554 332 566555666777778887522 233 599999999 99999 999999
Q ss_pred HHHHHHHHHH
Q 011846 409 SIFAWTRGLE 418 (476)
Q Consensus 409 ~IlS~amML~ 418 (476)
++-|.-+..+
T Consensus 313 l~~Ai~~A~~ 322 (328)
T 1yxo_A 313 LQVALETAYQ 322 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988776554
No 42
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=87.72 E-value=0.22 Score=52.32 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.8
Q ss_pred CCCceEeeecccCCcccccccc
Q 011846 202 WKKPICIGRHAFGDQYRATDTV 223 (476)
Q Consensus 202 ~~~pivi~Re~ted~Y~~~e~~ 223 (476)
+..++||+||||||+|.|.|+.
T Consensus 151 ~~vDivIvREnTeg~Y~G~e~~ 172 (435)
T 1tyo_A 151 DRVDMVIFRENTEDVYAGIEWP 172 (435)
T ss_dssp GGCEEEEEEECSSSGGGCCEEC
T ss_pred CCCcEEEEecCCCCeecccccc
Confidence 4689999999999999999874
No 43
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=87.71 E-value=0.31 Score=49.59 Aligned_cols=133 Identities=11% Similarity=-0.015 Sum_probs=82.3
Q ss_pred EecHHHHHHHHHHHHHHHHcC-C--C-CEEEEECCCcccccchHH--------HHHHHHHHHhhhccccccCCeEEe-eE
Q 011846 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF--------KDIFQQVYEERWRQKFEEHSIWYE-HR 326 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r-~--k-kVt~v~KaNVlk~tdglf--------~~i~~eva~~eYp~~f~~~~I~~e-~~ 326 (476)
.+|.+.+.+.++.+.+--+++ + + |+-+.- =|==.--+|+| +-..++.. + .++.++ ..
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr-~--------~Gi~~~GP~ 248 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLR-Q--------QGINLIGPL 248 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHH-H--------TTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHH-H--------CCCceeCCC
Confidence 468888999888887766553 3 2 454441 11111124555 22333322 1 166554 66
Q ss_pred eHHHHHHHHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCC---CceeeeeccccccccccccccCCCCC
Q 011846 327 LIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD---GKTLEAEAAHGTVTRHFRLHQKGQET 402 (476)
Q Consensus 327 lVDa~a~~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~---~a~~~fEp~HGSAPd~~~~~IaGk~~ 402 (476)
--|.+-.+-.+ ++| ++|+.+.+ .+---+--+++--++|+.-. -.+ -|-||||-| |||||
T Consensus 249 paDt~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTlGLP~iRT---S~DHGTAfD-----IAGkG- 311 (334)
T 3lxy_A 249 PADTLFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITLGLPFIRT---SVDHGTALE-----LAATG- 311 (334)
T ss_dssp CHHHHTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEESSSSCEE---EESSCCCGG-----GTTTT-
T ss_pred ChHHhcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEecCCCeeee---cCCCCcchh-----hccCC-
Confidence 67776655544 788 88887764 33333444555567777422 223 499999999 99999
Q ss_pred ccCcHhHHHHHHHHHHH
Q 011846 403 STNSIASIFAWTRGLEH 419 (476)
Q Consensus 403 iANPiA~IlS~amML~h 419 (476)
+|||.+++-|.-+..+.
T Consensus 312 ~A~~~S~~~Ai~~A~~~ 328 (334)
T 3lxy_A 312 TADVGSFITALNLAIKM 328 (334)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99999998887765543
No 44
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=87.60 E-value=0.25 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.3
Q ss_pred CCceEeeecccCCccccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTVI 224 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~ 224 (476)
..++||+||||||+|+|.|+..
T Consensus 156 ~vDivIvREnTeG~Y~G~e~~~ 177 (427)
T 3dms_A 156 KTNMVIFRENSEDIYAGIEWAA 177 (427)
T ss_dssp GCCEEEEEECSSGGGGCCEECT
T ss_pred CceEEEEEECCCCEecCccccc
Confidence 4789999999999999998753
No 45
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=87.50 E-value=0.22 Score=51.27 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=19.1
Q ss_pred CCceEeeecccCCccccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDTVI 224 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~ 224 (476)
..++||+||||||+|.|.|+..
T Consensus 139 ~vDivIvREnteG~Y~g~~~~~ 160 (366)
T 1vlc_A 139 GVDLVTVRELSYGVYYGQPRGL 160 (366)
T ss_dssp CCEEEEEEECSSGGGTEEEEEE
T ss_pred CceEEEEEeCCCCeecCCcccc
Confidence 4689999999999999988653
No 46
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=87.35 E-value=0.2 Score=52.60 Aligned_cols=22 Identities=0% Similarity=-0.345 Sum_probs=19.8
Q ss_pred ceEEEEecCCCCCCeeeeeeeec
Q 011846 229 KLKMVFDPEDGTGPVELDVYNFK 251 (476)
Q Consensus 229 ~iDlvivREnteG~~Y~g~~~~~ 251 (476)
++|+||+|||||| +|+|.++..
T Consensus 148 ~~DivIvREnteg-~Y~g~e~~~ 169 (427)
T 3us8_A 148 TKPIIVGRHAFGD-QYRATDFKF 169 (427)
T ss_dssp CSCEEEEEECSSG-GGGCEEEEE
T ss_pred CCCEEEEEeCCCC-ccCCceeEE
Confidence 5999999999999 999998753
No 47
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=86.59 E-value=0.56 Score=47.61 Aligned_cols=141 Identities=12% Similarity=0.013 Sum_probs=84.0
Q ss_pred EecHHHHHHHHHHHHHHHHcCC--CCEEEEECCCcccccchHHH-HHHHHHH--HhhhccccccCCeEEe-eEeHHHHHH
Q 011846 260 YNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFK-DIFQQVY--EERWRQKFEEHSIWYE-HRLIDDMVA 333 (476)
Q Consensus 260 ~~Tr~~~eRIar~AFe~A~~r~--kkVt~v~KaNVlk~tdglf~-~i~~eva--~~eYp~~f~~~~I~~e-~~lVDa~a~ 333 (476)
.+|.+.+.+.++...++-++-+ ++-..|-==|==.--+|+|= |-.+.+. -++.. +.+|.+. ..=-|.+-.
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r----~~Gi~~~GP~paDT~F~ 256 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDAR----AKGMDVYGPCPPDTVFL 256 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHH----TTTCEEEEEECHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHH----HCCCceeCCCCchhhcc
Confidence 4799999999999888322223 34344443443222345652 2111110 00111 1267664 666787766
Q ss_pred HHHhCCCce-EEEecCCccchhhhhHhhhcCCcccccceecCCCCceeeeeccccccccccccccCCCCCccCcHhHHHH
Q 011846 334 YAIKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 412 (476)
Q Consensus 334 ~LV~~P~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS 412 (476)
+-.+ ++| ++|| ||= |.+-.-+--+|+--++|+.-.--..---|-||||-| ||||| +|||.+++-|
T Consensus 257 ~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfD-----IAGkG-~A~~~Sl~~A 322 (330)
T 2hi1_A 257 QAYE--GQYDMVVA--MYH----DQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTG-KAKSESMAVS 322 (330)
T ss_dssp HHHT--TSCSEEEE--SSH----HHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-----TTTTT-CCCCHHHHHH
T ss_pred cccc--ccCCEEEE--ccc----ccccHhHhhcccCcceEEecCCCEEEecCCCCcccc-----ccCCC-CCChHHHHHH
Confidence 5443 688 5554 332 666666667777788887532111122589999999 99999 9999999988
Q ss_pred HHHHHH
Q 011846 413 WTRGLE 418 (476)
Q Consensus 413 ~amML~ 418 (476)
.-+..+
T Consensus 323 i~~A~~ 328 (330)
T 2hi1_A 323 IKLAMQ 328 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 48
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=86.51 E-value=0.31 Score=50.08 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=62.5
Q ss_pred CCceEeeecccCCcccccccccc-C--CC-ceEE-EEecCCCCCCeeeeeeee----cC-C-ceEEE-EEecHHHHH-HH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIK-G--PG-KLKM-VFDPEDGTGPVELDVYNF----KG-P-GIALA-MYNVDESIR-AF 269 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~-~--~~-~iDl-vivREnteG~~Y~g~~~~----~~-~-~va~~-~~~Tr~~~e-RI 269 (476)
..++||+||||||+|.|.+.... + ++ .+|+ ++.|+.+|- + -..-| .. . .|... +-|--+.+. .+
T Consensus 127 ~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eR-I--ar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf 203 (364)
T 3flk_A 127 DIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDR-I--LKYAFDLAEKRERKHVTSATKSNGMAISMPYW 203 (364)
T ss_dssp SSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEEEEHHHHHH-H--HHHHHHHHHHSSSCEEEEEECTTTSTTHHHHH
T ss_pred CCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEEECHHHHHH-H--HHHHHHHHHhcCCCeEEEEECcchhhhHHHHH
Confidence 47999999999999999875432 1 11 2343 344433221 0 00001 11 2 24422 333333344 44
Q ss_pred HHHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCCce
Q 011846 270 AESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEGGY 342 (476)
Q Consensus 270 ar~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~~F 342 (476)
-+.+-|.|++-. .|.+ .+-+-...+..+- .-|++| ||.+-.-+ +-+.++.|+=+.+-.
T Consensus 204 ~~~~~eva~eyp-dv~~---------~~~~vD~~am~lv--~~P~~F---DVivt~NlfGDILSD~aa~l~GslGl~ 265 (364)
T 3flk_A 204 DKRTEAMAAHYP-HVSW---------DKQHIDILCARFV--LQPERF---DVVVASNLFGDILSDLGPACAGTIGIA 265 (364)
T ss_dssp HHHHHHHHTTCT-TCEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHTTCSTTC
T ss_pred HHHHHHHHHHCC-CceE---------EeeEHHHHHHHHH--hCcccC---cEEEecccchHHHHHHHHHhcCCcccc
Confidence 444556664322 3443 2334445555555 358888 88776543 346667776665543
No 49
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=84.70 E-value=0.41 Score=48.64 Aligned_cols=121 Identities=13% Similarity=0.066 Sum_probs=61.5
Q ss_pred CCceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee----cC--CceEEE-EEecHHHHH-HHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF----KG--PGIALA-MYNVDESIR-AFAESS 273 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~----~~--~~va~~-~~~Tr~~~e-RIar~A 273 (476)
..++||+||||||+|.|.|+. ...-.+++ ++.|+.++- + -..-| .. ..+... +-+--+.+. .+-+.+
T Consensus 110 ~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eR-i--ar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~ 185 (333)
T 1x0l_A 110 GVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASER-I--GRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTV 185 (333)
T ss_dssp SCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHH-H--HHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHH
T ss_pred CCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHH-H--HHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHH
Confidence 368999999999999998764 11113333 344433221 0 00001 11 124322 333223344 445555
Q ss_pred HHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCCce
Q 011846 274 MSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEGGY 342 (476)
Q Consensus 274 Fe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~~F 342 (476)
-|.|.+-. .|.. .+-+-...+..+- .-|++| ||.+-.-+ +-++++.++=+.+-.
T Consensus 186 ~eva~eyp-~I~~---------~~~~vD~~~m~lv--~~P~~F---DVivt~NlfGDIlSD~aa~l~GslGl~ 243 (333)
T 1x0l_A 186 KEVAKDFP-LVNV---------QDIIVDNCAMQLV--MRPERF---DVIVTTNLLGDILSDLAAGLVGGLGLA 243 (333)
T ss_dssp HHHHTTCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHTTCSTTC
T ss_pred HHHHHHCC-CceE---------EEEEHHHHHHHHh--hCcccc---eEEEEcCccchhHhHHHHhhcCCcccc
Confidence 56664322 2333 2334445555655 358888 77776543 446667777555543
No 50
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=83.93 E-value=0.51 Score=48.52 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=18.8
Q ss_pred CceEeeecccCCccccccccc
Q 011846 204 KPICIGRHAFGDQYRATDTVI 224 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~ 224 (476)
.++||+||||||+|.|.|+..
T Consensus 124 vD~vivREnTeG~Y~g~e~~~ 144 (366)
T 3ty4_A 124 VDLVIVRENTECLYVKEERMV 144 (366)
T ss_dssp CEEEEEEECSCBGGGCCEEEE
T ss_pred CcEEEEeeCCCCEeecCccee
Confidence 589999999999999998754
No 51
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=81.63 E-value=0.5 Score=49.22 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCceEeeecccCCcccccccccc--C-CCc--eEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIK--G-PGK--LKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIRAFA 270 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~--~-~~~--iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~eRIa 270 (476)
..++||+||||||+|.|.|+... + .+. +|+ ++.|+.+|- + -..-| . ...|... +-|--+.+.-+-
T Consensus 167 ~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eR-I--ar~AFe~A~~rrkkVT~v~KaNVlk~sglf~ 243 (405)
T 3r8w_A 167 GVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDR-I--ARVAFETARKRRGKLCSVDKANVLEASILWR 243 (405)
T ss_dssp TCEEEEEEECSCSTTTCSSCEEEECSSSCEEEEEEEEEEHHHHHH-H--HHHHHHHHHTTTSEEEEEECTTTCHHHHHHH
T ss_pred CceEEEEeeCCCCeecCCccccccCCCCceEEEEEEEecHHHHHH-H--HHHHHHHHHHcCCeEEEEECchhhccccHHH
Confidence 36899999999999999876432 1 111 333 344432221 0 00001 0 1234322 323223344444
Q ss_pred HHHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCCc
Q 011846 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEGG 341 (476)
Q Consensus 271 r~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~~ 341 (476)
+.+-|.|++-. .|.+ .+-+-...+..+- .-|++| ||.+-.-+ +-+.++.|+=+.+-
T Consensus 244 ~~~~eva~eYP-dV~~---------~~~~VD~~amqLV--~~P~~F---DViVt~NlfGDILSD~aA~l~GslGl 303 (405)
T 3r8w_A 244 KRVTALASEYP-DVEL---------SHMYVDNAAMQLV--RDPKQF---DTIVTNNIFGDILSDEASMITGSIGM 303 (405)
T ss_dssp HHHHHHGGGST-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhHCC-CCeE---------EeeeHHHHHHHHH--hChhhC---cEEeecchhhHHHHHHHHHhcCcccc
Confidence 44556655432 2333 2334445555655 358888 88776542 34566777655443
No 52
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=81.50 E-value=0.51 Score=48.37 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.6
Q ss_pred CceEeeecccCCcccccc
Q 011846 204 KPICIGRHAFGDQYRATD 221 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e 221 (476)
.+|||+||||||+|.|.+
T Consensus 127 vDivIvREnteg~Y~g~~ 144 (358)
T 1a05_A 127 VDILVVRELTGDIYFGQP 144 (358)
T ss_dssp CEEEEEEECSSSTTTCSS
T ss_pred ceEEEEEecCCCcccCCc
Confidence 689999999999999875
No 53
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=81.34 E-value=0.57 Score=48.34 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCceEeeecccCCccccccccccC----CCceEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKG----PGKLKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIRAFAE 271 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~----~~~iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~eRIar 271 (476)
..++||+||||||+|.|.+..... ...+|+ ++.|+.+|- + -..-| . ...|... +-|--+.+.-+-+
T Consensus 140 ~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~eR-I--ar~AFe~A~~rrkkVT~v~KaNvl~~~glf~~ 216 (375)
T 3vmk_A 140 GFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIRR-I--AKIAFESAQGRRKKVTSVDKANVLACSVLWRE 216 (375)
T ss_dssp CCEEEEEEECSSBTTTCSSCEEECCGGGCEEEEEEEEEHHHHHH-H--HHHHHHHHHTTTSEEEEEECTTTCHHHHHHHH
T ss_pred CCCEEEEeeCCCCEecCCccccccCCCCceEEEEEEEcHHHHHH-H--HHHHHHHHHHcCCcEEEEECchhhhhhhHHHH
Confidence 478999999999999997643211 012333 344432221 0 00001 0 1234322 3232233344445
Q ss_pred HHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCC
Q 011846 272 SSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEG 340 (476)
Q Consensus 272 ~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~ 340 (476)
.+-|.|++-. .|.+ .+-+-..++..+- .-|.+| ||.+-.-+ +.++++.|+=+.+
T Consensus 217 ~~~eva~eyp-dV~~---------~~~~VD~~am~lv--~~P~~F---DViVt~NlfGDILSD~aa~l~GslG 274 (375)
T 3vmk_A 217 VVEEVAKDYP-DVEL---------EHIYIDNATMQLL--RRPNEF---DVMLCSNLFGDIVSDEIAMLTGSMG 274 (375)
T ss_dssp HHHHHHTTCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHCC-CceE---------eeeeHHHHHHHHH--hCcccC---cEEEECchhHHHHHHHHHHhcCCcc
Confidence 5556776322 2333 2334445555665 358888 88776543 3466677765444
No 54
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=81.34 E-value=1.1 Score=45.97 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=44.8
Q ss_pred Cce-EEEecCCccchhhhhHhhhcCCcccccceecCCC---CceeeeeccccccccccccccCCCCCccCcHhHHHHHHH
Q 011846 340 GGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSD---GKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTR 415 (476)
Q Consensus 340 ~~F-ViVt~NlfGDILSDlaA~l~GslGlapSanig~~---~a~~~fEp~HGSAPd~~~~~IaGk~~iANPiA~IlS~am 415 (476)
++| .+|| ||= |.+-.-+--+|+--++|+.-. -.+ -|-||||-| |||||.+|||.+++-|.-+
T Consensus 294 ~~~D~vlA--MYH----DQGliplK~l~F~~gVNvTlGLP~IRT---SvDHGTAfD-----IAGkG~~Ad~~Sl~~Ai~~ 359 (367)
T 3tsn_A 294 KNCNRLVA--MYH----DLALAPLKALYFDKSINVSLNLPIIRV---SVDHGTAFD-----KAYKNAKINTKSYFEAAKF 359 (367)
T ss_dssp HHCCEEEE--SSH----HHHHHHHHHHCTTTCEEEEESSSSCEE---ECCCCSCTT-----SCSSCCCCCCHHHHHHHHH
T ss_pred cCCCEEEE--ccc----cCcchhhhhcccCccEEEecCCCeeee---cCCCCcchh-----hcCCCCcCChHHHHHHHHH
Confidence 466 5554 332 454444455666677787522 233 489999999 9999989999999988876
Q ss_pred HHH
Q 011846 416 GLE 418 (476)
Q Consensus 416 ML~ 418 (476)
..+
T Consensus 360 A~~ 362 (367)
T 3tsn_A 360 AIN 362 (367)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 55
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=80.12 E-value=0.96 Score=46.88 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=57.7
Q ss_pred CceEeeecccCCccccccccccCCC---ceEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHHHHHHHH
Q 011846 204 KPICIGRHAFGDQYRATDTVIKGPG---KLKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIRAFAESS 273 (476)
Q Consensus 204 ~pivi~Re~ted~Y~~~e~~~~~~~---~iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~eRIar~A 273 (476)
.++||+||||||+|.|.+.....++ .+|+ ++.|+.+|- + -..-| . ...|... +-|--....-+-+.+
T Consensus 149 vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~~~Tr~~~eR-I--ar~AFe~A~~rrkkVT~v~KaNVl~t~glfr~~~ 225 (390)
T 3u1h_A 149 VDLVIVRELTGGLYFGEPSERYEEGEEAAVDTLLYTREEIER-I--IRKAFELALTRKKKVTSVDKANVLESSRLWREVA 225 (390)
T ss_dssp CEEEEEEECSSBSCC-------CTTCSEEEEEEEEEHHHHHH-H--HHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHH
T ss_pred CcEEEEeeCCCCeecCccccccCCCCceEEEEEEecHHHHhH-H--HHHHHHHHHHcCCceEEEECCcccccchHHHHHH
Confidence 6899999999999999886542111 2343 344443221 0 00001 0 2234322 322223333344445
Q ss_pred HHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeE----eHHHHHHHHHhCCCce
Q 011846 274 MSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR----LIDDMVAYAIKSEGGY 342 (476)
Q Consensus 274 Fe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~----lVDa~a~~LV~~P~~F 342 (476)
-|.|++-. .|.+ .+-+-..++..+- .-|.+| ||.+-.- ++.+.++.|+=+.+-.
T Consensus 226 ~eva~eYP-dV~~---------~~~~VD~~amqLV--~~P~~F---DViVt~NlfGDILSD~aA~l~GslGl~ 283 (390)
T 3u1h_A 226 EEVAKEYP-DVEL---------EHMLVDNAAMQLI--RNPRQF---DVIVTENMFGDILSDEASMITGSLGML 283 (390)
T ss_dssp HHHHTTCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHhHCC-CCeE---------EeeeHHHHHHHHH--hCcccC---cEEEecccchHHHHHHHHHhcCchhhc
Confidence 56664322 2443 2334445555555 358888 8877654 3456677777666544
No 56
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=79.07 E-value=1.2 Score=47.37 Aligned_cols=117 Identities=9% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCceEeeecccCCccccccccccCCCceEEE-EecCCCCCCeeeeeeee----cC--CceEEE-EEecHHHHH-HHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGPGKLKMV-FDPEDGTGPVELDVYNF----KG--PGIALA-MYNVDESIR-AFAESS 273 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~~~iDlv-ivREnteG~~Y~g~~~~----~~--~~va~~-~~~Tr~~~e-RIar~A 273 (476)
..+++|+||||||.|.|.++.....-.+++- +.|+..+- + -..-| .. ..+..+ +-+--+.+. .+-+.+
T Consensus 130 ~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieR-I--ar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~ 206 (496)
T 2d1c_A 130 GIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEK-I--VRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAF 206 (496)
T ss_dssp CCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHH
T ss_pred CccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHH-H--HHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHH
Confidence 4789999999999999987653221234432 44433221 0 00001 11 224322 333333345 444444
Q ss_pred HHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHh
Q 011846 274 MSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIK 337 (476)
Q Consensus 274 Fe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~ 337 (476)
-|.|.+-. .|.. .+-+-...+..+- .-|.+| ||.+-.-+ +-++++.++=
T Consensus 207 ~eVa~eYP-dI~~---------e~~~VD~~amqLV--~~P~~F---DVIVt~NLfGDILSDlaA~l~G 259 (496)
T 2d1c_A 207 EQVAQEYP-DIEA---------VHIIVDNAAHQLV--KRPEQF---EVIVTTNMNGDILSDLTSGLIG 259 (496)
T ss_dssp HHHHTTCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHTTTT
T ss_pred HHHHHHCC-CceE---------EEEeHHHHHHHHh--hCcCcc---eEEEECCcchHHHHHHHHHhcC
Confidence 55554322 2433 2334444555555 358888 77776443 3344455543
No 57
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=78.83 E-value=0.66 Score=47.62 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCceEeeecccCCccccccccccCC----CceEE-EEecCCCCCCeeeeeeee----c-CCceEEE-EEecHHHHHHHHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGP----GKLKM-VFDPEDGTGPVELDVYNF----K-GPGIALA-MYNVDESIRAFAE 271 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~----~~iDl-vivREnteG~~Y~g~~~~----~-~~~va~~-~~~Tr~~~eRIar 271 (476)
..++||+||||||+|.|.+...... ..+++ ++.|+.++- + -..-| . ...+..+ +-|--+....+-+
T Consensus 131 ~vDivivREnteg~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eR-i--ar~AFe~A~~rrkkVt~v~KaNvlk~~~lf~~ 207 (363)
T 1cnz_A 131 GFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIER-I--ARIAFESARKRRRKVTSIDKANVLQSSILWRE 207 (363)
T ss_dssp CCEEEEEEECSSGGGTCSSCEEECCGGGCEEEEEEEEEHHHHHH-H--HHHHHHHHHTTTSEEEEEECTTTCHHHHHHHH
T ss_pred CCCEEEEecccCCeecCCcCccccCCCCceEEEEEEEcHHHHHH-H--HHHHHHHHHhcCCeEEEEECCcccccchhHHH
Confidence 3689999999999999985321110 12233 333332221 0 00001 0 1224432 3333333344555
Q ss_pred HHHHHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCC
Q 011846 272 SSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEG 340 (476)
Q Consensus 272 ~AFe~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~ 340 (476)
.+-|.|++-. .|..- +-+-...+..+- .-|.+| ||.+-.-+ +-++++.|+=+.+
T Consensus 208 ~~~eva~eyp-dI~~~---------~~~vD~~~m~lv--~~P~~F---DVivt~NlfGDIlSD~aa~l~GslG 265 (363)
T 1cnz_A 208 IVNDVAKTYP-DVELA---------HMYIDNATMQLI--KDPSQF---DVLLCSNLFGDILSDECAMITGSMG 265 (363)
T ss_dssp HHHHHHTTCT-TSEEE---------EEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHCC-CceEe---------eeeHHHHHHHHh--hCcccc---eEEEECCcchHHHHHHHHHhcCCCc
Confidence 5556663222 24442 334445555665 348888 88776543 4566777774443
No 58
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=78.47 E-value=0.62 Score=48.40 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=19.6
Q ss_pred CceEEEEecCCCCCCeeeeeeee
Q 011846 228 GKLKMVFDPEDGTGPVELDVYNF 250 (476)
Q Consensus 228 ~~iDlvivREnteG~~Y~g~~~~ 250 (476)
.++|+||+|||||| +|+|.++.
T Consensus 123 ~~~divIvRE~teg-~Y~g~e~~ 144 (402)
T 2uxq_A 123 WQKPIVVGRHAYGD-FYKNAEIF 144 (402)
T ss_dssp CCSCCEEEEECSCG-GGGCEEEE
T ss_pred CCCCeEEEeccCCC-cccCccee
Confidence 46999999999999 99998765
No 59
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=78.29 E-value=0.74 Score=47.21 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.5
Q ss_pred CCceEeeecccCCccccccc
Q 011846 203 KKPICIGRHAFGDQYRATDT 222 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~ 222 (476)
..++||+||||||+|.|.|.
T Consensus 128 ~iD~vivREnteg~Y~g~e~ 147 (359)
T 2y3z_A 128 GVDVLIVRELTGGIYFGEPR 147 (359)
T ss_dssp TCEEEEEEECSCSTTTCSSC
T ss_pred CceEEEEecCccceEecCCC
Confidence 36899999999999998764
No 60
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=76.01 E-value=0.86 Score=46.76 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=60.2
Q ss_pred CCceEeeecccCCccccccccccCCCceEE-EEecCCCCCCeeeeeeee-----cCCceEEE-EEecHHHHHHHHH-HHH
Q 011846 203 KKPICIGRHAFGDQYRATDTVIKGPGKLKM-VFDPEDGTGPVELDVYNF-----KGPGIALA-MYNVDESIRAFAE-SSM 274 (476)
Q Consensus 203 ~~pivi~Re~ted~Y~~~e~~~~~~~~iDl-vivREnteG~~Y~g~~~~-----~~~~va~~-~~~Tr~~~eRIar-~AF 274 (476)
..++||+||||||+|.|.+... ....+|+ ++.|+.+|- + -..-| ....|... +-+--+ +.++-+ .+-
T Consensus 133 ~vD~vivREnTeG~Y~g~~~~~-~~~a~~~~~~Tr~~~eR-I--ar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~ 207 (361)
T 3udu_A 133 GVDILCVRELTGGIYFGKQDLG-KESAYDTEIYTKKEIER-I--ARIAFESARIRKKKVHLIDKANVLA-SSILWREVVA 207 (361)
T ss_dssp CCEEEEEEECSSGGGTSCEEEC-SSEEEEEEEEEHHHHHH-H--HHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHH
T ss_pred CCcEEEEcccCCCeecCccCCc-CceEEEEEeccHHHHHH-H--HHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHH
Confidence 3689999999999999875422 1123444 344443221 0 00001 02234322 322223 344444 455
Q ss_pred HHHHcCCCCEEEEECCCcccccchHHHHHHHHHHHhhhccccccCCeEEeeEe----HHHHHHHHHhCCCc
Q 011846 275 SLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRL----IDDMVAYAIKSEGG 341 (476)
Q Consensus 275 e~A~~r~kkVt~v~KaNVlk~tdglf~~i~~eva~~eYp~~f~~~~I~~e~~l----VDa~a~~LV~~P~~ 341 (476)
|.|++-. .|.+ .+-+-..++..+- .-|++| ||.+-.-+ +-+.++.|+=+.+-
T Consensus 208 eva~eyp-dV~~---------~~~~VD~~am~lv--~~P~~F---DViVt~NlfGDILSD~aa~l~GslGl 263 (361)
T 3udu_A 208 NVAKDYQ-DINL---------EYMYVDNAAMQIV--KNPSIF---DVMLCSNLFGDILSDELAAINGSLGL 263 (361)
T ss_dssp HHGGGCT-TSEE---------EEEEHHHHHHHHH--HCGGGC---SEEEECHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHCC-CCeE---------EeeeHHHHHHHHH--hCcccC---cEEEecchhHHHHHHHHHHhcCchhh
Confidence 6665432 2333 2333444555555 358888 87776542 44666777655443
No 61
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=62.89 E-value=2.6 Score=43.87 Aligned_cols=22 Identities=0% Similarity=-0.278 Sum_probs=19.3
Q ss_pred CceEEEEecCCCCCCeeeeeeee
Q 011846 228 GKLKMVFDPEDGTGPVELDVYNF 250 (476)
Q Consensus 228 ~~iDlvivREnteG~~Y~g~~~~ 250 (476)
.++|++|+|||||| +|+|++..
T Consensus 125 ~~~divIvRe~t~g-~Y~g~d~~ 146 (413)
T 1lwd_A 125 WTKPITIGRHAHGD-QYKATDFV 146 (413)
T ss_dssp CCSCEEEEEECSSG-GGGCEEEE
T ss_pred CCCceEEEecccCC-ccCCceeE
Confidence 46999999999999 99988664
No 62
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=60.08 E-value=11 Score=41.03 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=74.3
Q ss_pred ecccCCccccccccc-cCCCceEEEEecCCCCCCeeeeee-eecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEE
Q 011846 210 RHAFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELDVY-NFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (476)
Q Consensus 210 Re~ted~Y~~~e~~~-~~~~~iDlvivREnteG~~Y~g~~-~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v 287 (476)
-...+|.|...--.. .....+.+.++..+++- .-.-.. ....++|.++.+++.+.-..|.+...+-|++.+- +.++
T Consensus 175 ~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gv-LfSl 252 (741)
T 1itw_A 175 HMDNGDFYGSEKAALIGAPGSVKIELIAKDGSS-TVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQGV-LLSV 252 (741)
T ss_dssp CCSSSSHHHHCEEEECCSSEEEEEEEEETTSCE-EEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTC-EEEE
T ss_pred eccCCCccCcceeEEecCCCeEEEEEEcCCCcE-EEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCc-eeeh
Confidence 334567665432221 23457778888776542 111111 1134678899999999999999999999988775 4444
Q ss_pred -ECCCcccccchHH----HHH-HHHHHHhhhccccccCCeEEeeEeHH
Q 011846 288 -TKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSIWYEHRLID 329 (476)
Q Consensus 288 -~KaNVlk~tdglf----~~i-~~eva~~eYp~~f~~~~I~~e~~lVD 329 (476)
-|++-||.+|-.. -++ |.++. ++|.+.|.+.||..+.-+-|
T Consensus 253 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlgd 299 (741)
T 1itw_A 253 HLKATMMKVSDPIMFGQIVSEFYKDAL-TKHAEVLKQIGFDVNNGIGD 299 (741)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHTHHHHHHTTCCGGGCHHH
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccCHHH
Confidence 4999999998643 333 55566 36776777777665544433
No 63
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=59.92 E-value=17 Score=39.62 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred ecccCCccccccccc-cCCCceEEEEecCCCCCCeeeeee-eecCCceEEEEEecHHHHHHHHHHHHHHHHcCCCCEEEE
Q 011846 210 RHAFGDQYRATDTVI-KGPGKLKMVFDPEDGTGPVELDVY-NFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (476)
Q Consensus 210 Re~ted~Y~~~e~~~-~~~~~iDlvivREnteG~~Y~g~~-~~~~~~va~~~~~Tr~~~eRIar~AFe~A~~r~kkVt~v 287 (476)
-...+|.|...--.. .....+.+.++..+++- .-.-.. ....++|.++.+++.+.-..|.+...+-|++.+- +.++
T Consensus 173 ~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~gv-LfSl 250 (738)
T 2b0t_A 173 TMDANDFRHNEKSIILDAADEVQIKHIAADGTE-TILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGI-LFSA 250 (738)
T ss_dssp CCSSSSHHHHCEEEECSSCEEEEEEEECSSCCE-EEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTC-EEEE
T ss_pred eccCCCccCcceeEEecCCCeEEEEEEcCCCcE-EEecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcCc-eeeh
Confidence 334567665432221 23457777888766432 111111 1134678899999999999999999999988775 4444
Q ss_pred -ECCCcccccchHH----HHH-HHHHHHhhhccccccCCeEEeeEeHH
Q 011846 288 -TKNTILKKYDGRF----KDI-FQQVYEERWRQKFEEHSIWYEHRLID 329 (476)
Q Consensus 288 -~KaNVlk~tdglf----~~i-~~eva~~eYp~~f~~~~I~~e~~lVD 329 (476)
-|++-||.+|-.. -++ |.++. ++|.+.|.+.||..+.-+-|
T Consensus 251 HlKATMMKVSDPIiFGhaV~vf~kdvF-~k~~~~~~~lGvn~nnGlgd 297 (738)
T 2b0t_A 251 HLKATMMKVSDPIIFGHVVRAYFADVF-AQYGEQLLAAGLNGENGLAA 297 (738)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHH-HHHHHHHHHTTCSSTTHHHH
T ss_pred hhhhccccccCcccccchhhhhhHHHH-HHHHHHHHHcCCCcccCHHH
Confidence 4999999998643 333 45565 36766676666655544433
No 64
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=51.34 E-value=4.1 Score=42.63 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=14.0
Q ss_pred CceEeeecccCCccc
Q 011846 204 KPICIGRHAFGDQYR 218 (476)
Q Consensus 204 ~pivi~Re~ted~Y~ 218 (476)
.+++|+||||||+|.
T Consensus 157 ~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 157 TDTLIPGPGSLELVY 171 (427)
T ss_dssp EEEEECSSEEEEEEE
T ss_pred eeEEEeccCccceee
Confidence 689999999999997
No 65
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=51.19 E-value=4.5 Score=41.86 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=18.2
Q ss_pred CceEEEEecCCCCCCeeeeeee
Q 011846 228 GKLKMVFDPEDGTGPVELDVYN 249 (476)
Q Consensus 228 ~~iDlvivREnteG~~Y~g~~~ 249 (476)
.++|++|+|||||| +|.|.+.
T Consensus 124 ~~~divi~Re~t~g-~Y~g~d~ 144 (399)
T 1zor_A 124 WKKPIIIGRHAYGD-IYNAVEA 144 (399)
T ss_dssp CCSCCEEEECCSSG-GGGCEEE
T ss_pred cCccceeeecccCC-CcCCcee
Confidence 35999999999999 9998854
No 66
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=34.29 E-value=94 Score=28.29 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=49.9
Q ss_pred ecccEEEEcCC----CcHHHHHHHHHHHHhcCCCceeEEEEecch-hhH--hhcCCCCcHH---HHHHHHhcCeEEEecc
Q 011846 84 VQNPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI-LNR--DATDDKVTVE---SAEATLKYNVAIKCAT 153 (476)
Q Consensus 84 ~~~~I~vi~GD----GIGpEI~~a~~~~l~~~~~~i~~~~~d~G~-~~~--~~tg~~lp~e---tleaik~~daiLkGav 153 (476)
|-++|++|-|- -.++.+.+.+.+.+ ..+ ++++.+|+.. ..+ |..+ ..|++ ..+.++++|+++.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~-~~~--~~~~~idl~dLP~~~~d~~~-~~p~~~~~l~~~i~~aD~~ii~-- 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA-EGR--LEFHLLHIGDLPHYNDDLWA-DAPESVLRLKDRIEHSDAVLAI-- 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH-TTT--EEEEECCGGGSCCCCGGGGG-GCCHHHHHHHHHHHTSSEEEEE--
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc-cCC--CEEEEEecccCCCCCCCccc-CCCHHHHHHHHHHHhCCcEEEe--
Confidence 45678888884 67777777766543 334 4555555542 111 1111 23554 45678899999974
Q ss_pred cCCCCccccccccccCCCCcchhHhhhcCcE
Q 011846 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 154 gtP~~~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
||.. ..|.-..|.+.+|..
T Consensus 75 -tPeY-----------n~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 75 -TPEY-----------NRSYPGMIKNAIDWA 93 (190)
T ss_dssp -CCCB-----------TTBCCHHHHHHHHHH
T ss_pred -chhh-----------cccCCHHHHHHHHHh
Confidence 5653 234558899999954
No 67
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=29.96 E-value=1.8e+02 Score=26.27 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=53.0
Q ss_pred ccEEEEcCC----CcHHHHHHHHHH----HHhcCCCceeEEEEecchhhHh---hcCCCC-cH---HHHHHHHhcCeEEE
Q 011846 86 NPIVEMDGD----EMTRIIWQMIKD----KLIFPYLDLDIKYYDLGILNRD---ATDDKV-TV---ESAEATLKYNVAIK 150 (476)
Q Consensus 86 ~~I~vi~GD----GIGpEI~~a~~~----~l~~~~~~i~~~~~d~G~~~~~---~tg~~l-p~---etleaik~~daiLk 150 (476)
.+|++|-|- +.+..+.+.+.+ .+.+.+-.++.+.+|++..... ...... ++ +..+.++++|++++
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 367777664 778888877776 4544443566677777654422 111122 23 57788899999998
Q ss_pred ecccCCCCccccccccccCCCCcchhHhhhcCcE
Q 011846 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 151 GavgtP~~~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|. |.. |.++...|.+-+|..
T Consensus 92 ~s---P~Y-----------~~~~~~~lK~~iD~~ 111 (191)
T 3k1y_A 92 AT---PVF-----------KASYTGLFKMFFDIL 111 (191)
T ss_dssp EE---ECB-----------TTBSCHHHHHHHHHS
T ss_pred Ec---Ccc-----------CCcCcHHHHHHHHHh
Confidence 64 542 345557888888853
No 68
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=24.00 E-value=43 Score=33.82 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=15.8
Q ss_pred ecccEEEEcCC--CcHHHHHHH
Q 011846 84 VQNPIVEMDGD--EMTRIIWQM 103 (476)
Q Consensus 84 ~~~~I~vi~GD--GIGpEI~~a 103 (476)
|+..|++-.|| ||||||+-.
T Consensus 1 m~~~iaIT~GDpaGIGpEii~k 22 (328)
T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLL 22 (328)
T ss_dssp CCCCEEEECCSTTSSHHHHHHH
T ss_pred CCCEEEEcCCCCcchhHHHHHH
Confidence 34458999999 999998653
No 69
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.18 E-value=1.9e+02 Score=27.27 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=52.8
Q ss_pred ccEEEEcCC----CcHHHHHHHHHHHHhcCCCceeEEEEecchhhHhhcCCCCc---HHHHHHHHhcCeEEEecccCCCC
Q 011846 86 NPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVT---VESAEATLKYNVAIKCATITPDE 158 (476)
Q Consensus 86 ~~I~vi~GD----GIGpEI~~a~~~~l~~~~~~i~~~~~d~G~~~~~~tg~~lp---~etleaik~~daiLkGavgtP~~ 158 (476)
.+|++|-|- +.+..+.+.+.+.+.+.+++ ++.+++............+ .+..+.++++|+++++. |..
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~e--ve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~s---P~Y 109 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAE--VKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVS---PER 109 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCE--EEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEE---ECS
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCE--EEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEe---CCC
Confidence 478888875 88888888888777666654 4445554321111111133 34667889999999854 542
Q ss_pred ccccccccccCCCCcchhHhhhcCcE
Q 011846 159 TRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 159 ~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|.++...|.+-+|..
T Consensus 110 -----------n~sipa~LKn~iD~l 124 (247)
T 2q62_A 110 -----------HGAMTGIMKAQIDWI 124 (247)
T ss_dssp -----------SSSCCHHHHHHHHTS
T ss_pred -----------CCCccHHHHHHHHHh
Confidence 345557888888854
No 70
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=21.40 E-value=55 Score=33.07 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.2
Q ss_pred cEEEEcCC--CcHHHHHHHH
Q 011846 87 PIVEMDGD--EMTRIIWQMI 104 (476)
Q Consensus 87 ~I~vi~GD--GIGpEI~~a~ 104 (476)
||++-.|| ||||||+-.+
T Consensus 8 ~iaIT~GDpaGIGpEii~ka 27 (330)
T 2hi1_A 8 TVAITMGDPAGIGPEIIVKA 27 (330)
T ss_dssp CEEEECCCTTTTHHHHHHHH
T ss_pred CEEEcCCCCcchhHHHHHHH
Confidence 59999999 9999996543
No 71
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=20.78 E-value=2.5e+02 Score=25.66 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=49.2
Q ss_pred cEEEEcCC----CcHHHHHHHHHHHHhcC-CCceeEEEEecchh----------hHhhcCC-C-----CcHHHHHHHHhc
Q 011846 87 PIVEMDGD----EMTRIIWQMIKDKLIFP-YLDLDIKYYDLGIL----------NRDATDD-K-----VTVESAEATLKY 145 (476)
Q Consensus 87 ~I~vi~GD----GIGpEI~~a~~~~l~~~-~~~i~~~~~d~G~~----------~~~~tg~-~-----lp~etleaik~~ 145 (476)
+|++|-|- |-+..+.+++.+.+.+. +.++ +.+++... ....+|. + -.++..+.+.++
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v--~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~A 80 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDI--SFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES 80 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEE--EEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeE--EEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHC
Confidence 56777664 78888888888777554 5554 44554321 1111221 1 124677889999
Q ss_pred CeEEEecccCCCCccccccccccCCCCcchhHhhhcCcE
Q 011846 146 NVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (476)
Q Consensus 146 daiLkGavgtP~~~~~~~~~~~~~~~s~n~~LRk~Ldly 184 (476)
|++++|. |.. |.++...|..-+|-.
T Consensus 81 D~iI~~s---P~y-----------~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 81 DIIIISS---PVY-----------LQNVSVDTKNFIERI 105 (242)
T ss_dssp SEEEEEE---EEC-----------SSSCCHHHHHHHHHT
T ss_pred CEEEEEc---ccc-----------ccCCCHHHHHHHHHH
Confidence 9999865 431 234446677777743
Done!